Psyllid ID: psy9602

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
METTITTVTTITTGGGSGRQNSAEEEAEKAAQTIAQRARRGGHDRSKRFTQTRKVDNHHNSRPAASQIRRKKKRKRRRKRLRNAHGEVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK
Secondary Structure (PSIPRED)
ccEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
METTITTVTTittgggsgrqnsaEEEAEKAAQTIAQRArrgghdrskrftqtrkvdnhhnsrpaaSQIRRKKKRKRRRKRLRNahgevvmidpsdlpkraKWTIIITAGLLLLTCMLLVGITlrmapiidqmvngttgegvsMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAEslnvhavlclpelfftpasVEDLVDYLRDvgeaapatplfyyhipmftrvtlk
Flexible Loop (DISEMBL)
mettittvttittgggsgrqnsAEEEAEKAAQTIAqrarrgghdrskrftqtrkvdnhhnsrpaasqirrkkkrkrrrkrlrnahgevvmidpsdlpkraKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEaapatplfyyhiPMFTRVTLK
Low Complexity Region (SEG)
MEttittvttittgggSGRQNSAEEEAEKAAQTIAQRARRGGHDRSKRFTQTRKVDNHHNSRPAASQIrrkkkrkrrrkrLRNAHGEVVMIDPSDLPKRAKWtiiitaglllltcmllvgitlRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK
Disordered region (IsUnstruct)
***************************************************************************************VVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRV***
Disordered Region (DISOPRED)
***TITTVTTI***************************************************************************************RAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVT**
Disordered Region (DISEMBL)
METTITTVTTIT**********************************************************************NAHGEVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK
Disordered Region (DISPRO)
*ETTITTVTTITTG***********************************************************RKRRRKRLRNAHGEVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
METTITTVTTITTGGGSGRQNSAEEEAEKAAQTIAQRARRGGHDRSKRFTQTRKVDNHHNSRPAASQIRRKKKRKRRRKRLRNAHGEVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q9BXD5	320	N-acetylneuraminate lyase	no	N/A	0.451	0.337	0.370	4e-18
Q5RDY1	320	N-acetylneuraminate lyase	yes	N/A	0.451	0.337	0.370	4e-18
Q9BEC7	319	N-acetylneuraminate lyase	yes	N/A	0.451	0.338	0.351	1e-17
Q66H59	320	N-acetylneuraminate lyase	yes	N/A	0.451	0.337	0.370	1e-17
Q5XGL8	266	N-acetylneuraminate lyase	N/A	N/A	0.451	0.406	0.407	1e-17
Q29RY9	320	N-acetylneuraminate lyase	yes	N/A	0.451	0.337	0.361	2e-17
Q3B8E8	305	N-acetylneuraminate lyase	N/A	N/A	0.451	0.354	0.398	8e-17
Q5M905	305	N-acetylneuraminate lyase	yes	N/A	0.451	0.354	0.379	2e-16
Q9DCJ9	320	N-acetylneuraminate lyase	yes	N/A	0.451	0.337	0.342	2e-16
Q5ZKD4	308	N-acetylneuraminate lyase	yes	N/A	0.451	0.350	0.370	4e-15

>sp|Q9BXD5|NPL_HUMAN N-acetylneuraminate lyase OS=Homo sapiens GN=NPL PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 65/108 (60%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++ +ER+   E W+T+ K     V++ +G    +E  ELA+HA  +   
Sbjct: 47  FVNGTTGEGLSLSVSERRQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            +  +   F  P + + L+++L++V  AAPA P +YYHIP  T V ++
Sbjct: 107 GIAVIAPFFLKPWTKDILINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.
Homo sapiens (taxid: 9606)
EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 3

>sp|Q5RDY1|NPL_PONAB N-acetylneuraminate lyase OS=Pongo abelii GN=NPL PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 65/108 (60%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++ +ER+   E W+T+ K     V++ +G    +E  ELA+HA  +   
Sbjct: 47  FVNGTTGEGLSLSISERRQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            +  +   F  P + + L+++L++V  AAPA P +YYHIP  T V ++
Sbjct: 107 GIAVIAPFFLKPWTKDILINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

>sp|Q9BEC7|NPL_PIG N-acetylneuraminate lyase OS=Sus scrofa GN=NPL PE=1 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 65/108 (60%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++ +ER    E W+T+ +     +++ +G    +E  ELA+HA  +   
Sbjct: 47  FVNGTTGEGLSLSISERCQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            +  +   F  P + ++L+++L++V  AAPA P +YYHIP  T V ++
Sbjct: 107 GIAVIAPFFLKPWNKDNLINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Sus scrofa (taxid: 9823)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

>sp|Q66H59|NPL_RAT N-acetylneuraminate lyase OS=Rattus norvegicus GN=Npl PE=2 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 63/108 (58%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++ +ER+   E W+ + K     V++ +G    +E  ELA+HA  +   
Sbjct: 47  FVNGTTGEGLSLSISERRQVAEEWVRQGKNKLDQVVIHVGALNLKESQELAQHAAEIGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            +  +   FF   + + L+ +LR+V  AAPA P +YYHIP  T V ++
Sbjct: 107 GIAVIAPFFFKSQNKDALISFLREVAAAAPALPFYYYHIPSLTGVKIR 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

>sp|Q5XGL8|NPLB_XENLA N-acetylneuraminate lyase B OS=Xenopus laevis GN=npl-b PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 63/108 (58%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++  ERK   E W+  A+     V+V +G     +  +LA HA S    
Sbjct: 47  FVNGTTGEGMSLSICERKRLTEEWVKHARGKMDNVIVHVGCLGLSDSKDLAAHAASCGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
           A+  +   F  PA+++ LV YL+DV  AAP+ P +YYHIP  T +T +
Sbjct: 107 AISAVCPSFLKPANLDALVLYLKDVASAAPSLPFYYYHIPKLTGITYQ 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Xenopus laevis (taxid: 8355)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

>sp|Q29RY9|NPL_BOVIN N-acetylneuraminate lyase OS=Bos taurus GN=NPL PE=2 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 64/108 (59%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++ +ER    E W+T+ K     +++ +G    +E  ELA+HA  +   
Sbjct: 47  FVNGTTGEGLSLSISERCQVAEEWVTKGKNKLDQIVIHVGALSLKESQELAQHAAEIGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            +  +   F  P + + L+++L++V  AAPA P +YYHIP  T V ++
Sbjct: 107 GIAVIAPFFLKPWNKDVLINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

>sp|Q3B8E8|NPLA_XENLA N-acetylneuraminate lyase A OS=Xenopus laevis GN=npl-a PE=2 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 63/108 (58%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++  ERK   E W+ +A+     V+V +G     +  +LA HA S    
Sbjct: 47  FVNGTTGEGMSLSVHERKSLAEEWVKQARGKMNDVIVHVGCLSLSDSKDLAAHAASCGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
           A+  +   F  P+S++ LV YL++V  AAP  P +YYHIP  T +T +
Sbjct: 107 AISTVCPSFLKPSSLDALVLYLKEVASAAPNLPFYYYHIPRLTGITYQ 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Xenopus laevis (taxid: 8355)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

>sp|Q5M905|NPL_XENTR N-acetylneuraminate lyase OS=Xenopus tropicalis GN=npl PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++  ERK   E W+ +A+     V++ +G     +  +LA HA S    
Sbjct: 47  FVNGTTGEGMSLSVQERKCLAEEWVKQARGKMDNVIIHVGCLSLSDSKDLAAHAASCGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
           A+  +   F  P+S++ LV Y+++V  AAP+ P +YYHIP  T  T +
Sbjct: 107 AISIVCPSFLKPSSLDALVLYMKEVAFAAPSLPFYYYHIPRLTGTTYQ 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Xenopus tropicalis (taxid: 8364)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

>sp|Q9DCJ9|NPL_MOUSE N-acetylneuraminate lyase OS=Mus musculus GN=Npl PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++ +ER+   E W+ + +     V++ +G    +E  ELA+HA  +   
Sbjct: 47  FVNGTTGEGLSLSVSERRQVAEEWVNQGRNKLDQVVIHVGALNVKESQELAQHAAEIGAD 106

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            +  +   FF   + + L+ +LR+V  AAP  P +YYH+P  T V ++
Sbjct: 107 GIAVIAPFFFKSQNKDALISFLREVAAAAPTLPFYYYHMPSMTGVKIR 154

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

>sp|Q5ZKD4|NPL_CHICK N-acetylneuraminate lyase OS=Gallus gallus GN=NPL PE=2 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 61/108 (56%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            VNGTTGEG+S++  ERK   E WM + K     V++ +G     E  ELA+HA ++   
Sbjct: 46  FVNGTTGEGLSLSIQERKQLAEEWMCQGKGKLDHVIIHVGALSLLESQELARHAAAIGAS 105

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            +  +   FF P + ++L+ +L+ V   AP  P +YYHIP  T V ++
Sbjct: 106 GIAVIAPSFFKPTNKDELLGFLQKVASEAPTVPFYYYHIPAMTGVKIR 153

Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate. It prevents sialic acids from being recycled and returning to the cell surface.

Gallus gallus (taxid: 9031)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
118777605	282	AGAP007700-PA [Anopheles gambiae str. PE	0.447	0.379	0.607	2e-31
307177353	328	N-acetylneuraminate lyase [Camponotus fl	0.447	0.326	0.579	2e-31
307207894	307	N-acetylneuraminate lyase [Harpegnathos	0.447	0.348	0.560	5e-30
170028126	282	N-acetyl neuraminate lyase [Culex quinqu	0.447	0.379	0.570	6e-30
350399725	310	PREDICTED: N-acetylneuraminate lyase-lik	0.439	0.338	0.590	8e-30
332018986	310	N-acetylneuraminate lyase [Acromyrmex ec	0.447	0.345	0.542	3e-29
156537701	306	PREDICTED: N-acetylneuraminate lyase-lik	0.447	0.349	0.551	4e-29
340712420	310	PREDICTED: n-acetylneuraminate lyase-lik	0.447	0.345	0.560	7e-29
383862325	293	PREDICTED: N-acetylneuraminate lyase A-l	0.447	0.365	0.542	8e-29
157121271	282	2-Keto-3-deoxy-(6-phospho-)gluconate ald	0.447	0.379	0.542	5e-28

>gi|118777605|ref|XP_308175.3| AGAP007700-PA [Anopheles gambiae str. PEST] gi|116131982|gb|EAA03961.4| AGAP007700-PA [Anopheles gambiae str. PEST]

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 76/107 (71%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGTTGEG+ MTT ER L  EAW    K HG T+MVQIGG  + +VV+LA+HA  ++V 
Sbjct: 45  LVNGTTGEGMLMTTEERMLVTEAWQRSCKKHGITIMVQIGGAAYPDVVQLAQHASKMDVD 104

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           AVLCLPEL+F P S E LV YL+ V    P TP FYYHIPMFT V L
Sbjct: 105 AVLCLPELYFKPKSCEQLVTYLKGVAMHCPTTPFFYYHIPMFTDVNL 151

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177353|gb|EFN66526.1| N-acetylneuraminate lyase [Camponotus floridanus]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 81/107 (75%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGT+GEG+SM+ AERKL  EAW+   K     +M+QIGG  F +V+ELAKHAESLNV 
Sbjct: 65  LVNGTSGEGMSMSVAERKLVTEAWVKATKNTKQHLMIQIGGAPFPDVIELAKHAESLNVD 124

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           ++LCLPEL+  P + + L++YL  VG+AAP TPL YYHIPMFT + +
Sbjct: 125 SILCLPELYSKPTTPQKLIEYLEKVGQAAPNTPLLYYHIPMFTNINI 171

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207894|gb|EFN85455.1| N-acetylneuraminate lyase [Harpegnathos saltator]

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 80/107 (74%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGT+GEG+ M+ +ERKL  EAW    K     +M+Q+GG    +V+ELAKHAESL+V 
Sbjct: 43  LVNGTSGEGMLMSVSERKLVAEAWAKAVKETKQHLMIQVGGAPLPDVIELAKHAESLHVD 102

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           A+LCLPEL+F P + E L++YL  +G+AAP+TPL YYHIPMFT V +
Sbjct: 103 AILCLPELYFKPTTSEQLIEYLDIIGQAAPSTPLLYYHIPMFTNVNI 149

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028126|ref|XP_001841947.1| N-acetyl neuraminate lyase [Culex quinquefasciatus] gi|167871772|gb|EDS35155.1| N-acetyl neuraminate lyase [Culex quinquefasciatus]

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 74/107 (69%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGT+GEG+  T  ERK   EAW    + HG  +MVQIGG  F +VVELA+HAE L VH
Sbjct: 45  LVNGTSGEGMLQTVLERKQVAEAWSAACRKHGLVLMVQIGGAPFPDVVELARHAEGLGVH 104

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
            VLCLPEL+F P + E L +YL++V    P TP FYYHIPMFT V +
Sbjct: 105 GVLCLPELYFKPKTPEKLAEYLKNVASHCPETPFFYYHIPMFTDVNV 151

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399725|ref|XP_003485619.1| PREDICTED: N-acetylneuraminate lyase-like [Bombus impatiens]

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 78/105 (74%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGTTGEG SMTT+ERKL  EAW    KT    +M+Q+GGT   +V+ELAKHAE++   
Sbjct: 48  LVNGTTGEGPSMTTSERKLVAEAWANAVKTTKQHLMIQVGGTSLPDVLELAKHAENVKAD 107

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRV 236
           ++LCLPEL+F+P++ E L DYL+ VG AAP TPL YYHIP  T V
Sbjct: 108 SILCLPELYFSPSTSEQLKDYLKLVGSAAPNTPLLYYHIPSLTNV 152

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018986|gb|EGI59525.1| N-acetylneuraminate lyase [Acromyrmex echinatior]

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 81/107 (75%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGT+GEG+SM+ AERKL  EAW+   K     +M+Q+GG    +V+ELAKHA +L+V 
Sbjct: 46  LVNGTSGEGISMSVAERKLVTEAWVKAVKETKQHLMIQVGGAPLPDVIELAKHASNLHVD 105

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           ++LCLPEL+F P++ ++L++YL  VG+AAP TPL YYHIPM T V +
Sbjct: 106 SILCLPELYFKPSTPKELIEYLEIVGKAAPKTPLLYYHIPMLTNVNI 152

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537701|ref|XP_001607921.1| PREDICTED: N-acetylneuraminate lyase-like [Nasonia vitripennis]

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 80/107 (74%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGTTGEG++M+  ERK   EAW    K+H   +++Q+GG    +V ELA HA+SLNV 
Sbjct: 49  LVNGTTGEGMTMSVNERKEIAEAWSEATKSHDQHMVLQVGGAPLADVKELASHAQSLNVD 108

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           A+LCLPEL++ P++VE LV+YL+ VGEAAP TPL YYH P  +RV++
Sbjct: 109 AILCLPELYYKPSNVEQLVEYLQAVGEAAPETPLLYYHFPNMSRVSI 155

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712420|ref|XP_003394758.1| PREDICTED: n-acetylneuraminate lyase-like [Bombus terrestris]

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 78/107 (72%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGTTGEG SMTT+ERKL  EAW    KT    +M+Q+GGT   +V+ELAKHAE++   
Sbjct: 48  LVNGTTGEGPSMTTSERKLVAEAWANAVKTTKQHLMIQVGGTSLPDVLELAKHAENIKAD 107

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           ++LCLPEL+F+P++ + L DYL+ V  AAP TPL YYHIP  T V +
Sbjct: 108 SILCLPELYFSPSTSDQLKDYLKLVSSAAPNTPLLYYHIPSLTNVNV 154

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862325|ref|XP_003706634.1| PREDICTED: N-acetylneuraminate lyase A-like [Megachile rotundata]

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 79/107 (73%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGTTGEG SM+  ERKL+ EAW    KT    +M+Q+GG    +V+ELAKHAE++   
Sbjct: 48  LVNGTTGEGPSMSVGERKLHAEAWADVVKTTKQHLMIQVGGAPLPDVLELAKHAENIKAD 107

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           ++LCLPEL+F P+S E +++YL+ VG AAP+TPL YYHIP+ T V +
Sbjct: 108 SILCLPELYFKPSSPEQIIEYLKLVGSAAPSTPLLYYHIPVLTNVNV 154

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121271|ref|XP_001659894.1| 2-Keto-3-deoxy-(6-phospho-)gluconate aldolase, putative [Aedes aegypti] gi|108874623|gb|EAT38848.1| AAEL009298-PA [Aedes aegypti]

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 73/107 (68%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +VNGT+GEG+ M   ERK   EAW      +G  +MVQIGG  + +V+E+AKHAE L V 
Sbjct: 46  LVNGTSGEGMLMNVGERKQVTEAWKKACDVNGIVLMVQIGGAPYPDVIEMAKHAEKLEVD 105

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
            VLCLPEL+F P S E L +YL++V    P+ P FYYHIPMFT VT+
Sbjct: 106 GVLCLPELYFKPKSPEKLTEYLKNVAVHCPSIPFFYYHIPMFTDVTV 152

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
UNIPROTKB|Q9BXD5	320	NPL "N-acetylneuraminate lyase	0.447	0.334	0.373	5.8e-18
UNIPROTKB|Q5RDY1	320	NPL "N-acetylneuraminate lyase	0.447	0.334	0.373	7.5e-18
UNIPROTKB|E2RAE9	320	NPL "Uncharacterized protein"	0.447	0.334	0.364	9.5e-18
UNIPROTKB|Q5XGL8	266	npl-b "N-acetylneuraminate lya	0.439	0.394	0.419	1.2e-17
UNIPROTKB|F1NHQ8	311	NPL "N-acetylneuraminate lyase	0.464	0.356	0.369	1.6e-17
RGD|1549702	320	Npl "N-acetylneuraminate pyruv	0.447	0.334	0.373	1.6e-17
UNIPROTKB|Q9BEC7	319	NPL "N-acetylneuraminate lyase	0.447	0.335	0.355	2e-17
UNIPROTKB|F1NK56	308	NPL "N-acetylneuraminate lyase	0.447	0.347	0.373	2.5e-17
UNIPROTKB|Q29RY9	320	NPL "N-acetylneuraminate lyase	0.447	0.334	0.364	2.5e-17
UNIPROTKB|Q5ZKD4	308	NPL "N-acetylneuraminate lyase	0.447	0.347	0.373	3.2e-17

UNIPROTKB|Q9BXD5 NPL "N-acetylneuraminate lyase" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 40/107 (37%), Positives = 65/107 (60%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++ +ER+   E W+T+ K     V++ +G    +E  ELA+HA  +    
Sbjct:    48 VNGTTGEGLSLSVSERRQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGADG 107

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
             +  +   F  P + + L+++L++V  AAPA P +YYHIP  T V ++
Sbjct:   108 IAVIAPFFLKPWTKDILINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019262 "N-acetylneuraminate catabolic process" evidence=IEA;TAS

GO:0008747 "N-acetylneuraminate lyase activity" evidence=ISS

UNIPROTKB|Q5RDY1 NPL "N-acetylneuraminate lyase" [Pongo abelii (taxid:9601)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 40/107 (37%), Positives = 65/107 (60%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++ +ER+   E W+T+ K     V++ +G    +E  ELA+HA  +    
Sbjct:    48 VNGTTGEGLSLSISERRQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGADG 107

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
             +  +   F  P + + L+++L++V  AAPA P +YYHIP  T V ++
Sbjct:   108 IAVIAPFFLKPWTKDILINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

GO:0008747 "N-acetylneuraminate lyase activity" evidence=ISS

UNIPROTKB|E2RAE9 NPL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 39/107 (36%), Positives = 65/107 (60%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++ +ER+   E W+T+ +     V++ +G    +E  ELA+HA  +    
Sbjct:    48 VNGTTGEGLSLSVSERRRVAEEWVTKGRNKLDQVVIHVGALSLKESQELAQHAAEIGADG 107

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
             +  +   F  P + + L+++L++V  AAPA P +YYHIP  T V ++
Sbjct:   108 IAVIAPFFLKPWNKDVLINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|Q5XGL8 npl-b "N-acetylneuraminate lyase B" [Xenopus laevis (taxid:8355)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 44/105 (41%), Positives = 62/105 (59%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++  ERK   E W+  A+     V+V +G     +  +LA HA S    A
Sbjct:    48 VNGTTGEGMSLSICERKRLTEEWVKHARGKMDNVIVHVGCLGLSDSKDLAAHAASCGADA 107

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVT 237
             +  +   F  PA+++ LV YL+DV  AAP+ P +YYHIP  T +T
Sbjct:   108 ISAVCPSFLKPANLDALVLYLKDVASAAPSLPFYYYHIPKLTGIT 152

GO:0008747 "N-acetylneuraminate lyase activity" evidence=ISS

UNIPROTKB|F1NHQ8 NPL "N-acetylneuraminate lyase" [Gallus gallus (taxid:9031)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 41/111 (36%), Positives = 63/111 (56%)

Query:   129 IDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESL 188
             I + VNGTTGEG+S++  ERK   E WM + K     V++ +G     E  ELA+HA ++
Sbjct:    46 IFETVNGTTGEGLSLSIQERKQLAEEWMCQGKDKLDHVIIHVGALSLLESQELARHAAAI 105

Query:   189 NVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
                 +  +   FF P + ++L+ +L+ V   AP  P +YYHIP  T V ++
Sbjct:   106 GASGIAVIAPSFFKPTNKDELLGFLQKVASEAPTVPFYYYHIPAMTGVKIR 156

GO:0016829 "lyase activity" evidence=IEA

RGD|1549702 Npl "N-acetylneuraminate pyruvate lyase" [Rattus norvegicus (taxid:10116)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 40/107 (37%), Positives = 63/107 (58%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++ +ER+   E W+ + K     V++ +G    +E  ELA+HA  +    
Sbjct:    48 VNGTTGEGLSLSISERRQVAEEWVRQGKNKLDQVVIHVGALNLKESQELAQHAAEIGADG 107

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
             +  +   FF   + + L+ +LR+V  AAPA P +YYHIP  T V ++
Sbjct:   108 IAVIAPFFFKSQNKDALISFLREVAAAAPALPFYYYHIPSLTGVKIR 154

GO:0005737 "cytoplasm" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0008747 "N-acetylneuraminate lyase activity" evidence=ISO;ISS

GO:0019262 "N-acetylneuraminate catabolic process" evidence=IEA

UNIPROTKB|Q9BEC7 NPL "N-acetylneuraminate lyase" [Sus scrofa (taxid:9823)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 38/107 (35%), Positives = 65/107 (60%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++ +ER    E W+T+ +     +++ +G    +E  ELA+HA  +    
Sbjct:    48 VNGTTGEGLSLSISERCQVAEEWVTKGRNKLDQIVIHVGALSLKESQELAQHAAKIGADG 107

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
             +  +   F  P + ++L+++L++V  AAPA P +YYHIP  T V ++
Sbjct:   108 IAVIAPFFLKPWNKDNLINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

GO:0008747 "N-acetylneuraminate lyase activity" evidence=ISS

GO:0019262 "N-acetylneuraminate catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|F1NK56 NPL "N-acetylneuraminate lyase" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/107 (37%), Positives = 61/107 (57%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++  ERK   E WM + K     V++ +G     E  ELA+HA ++    
Sbjct:    47 VNGTTGEGLSLSIQERKQLAEEWMCQGKDKLDHVIIHVGALSLLESQELARHAAAIGASG 106

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
             +  +   FF P + ++L+ +L+ V   AP  P +YYHIP  T V ++
Sbjct:   107 IAVIAPSFFKPTNKDELLGFLQKVASEAPTVPFYYYHIPAMTGVKIR 153

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|Q29RY9 NPL "N-acetylneuraminate lyase" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 39/107 (36%), Positives = 64/107 (59%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++ +ER    E W+T+ K     +++ +G    +E  ELA+HA  +    
Sbjct:    48 VNGTTGEGLSLSISERCQVAEEWVTKGKNKLDQIVIHVGALSLKESQELAQHAAEIGADG 107

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
             +  +   F  P + + L+++L++V  AAPA P +YYHIP  T V ++
Sbjct:   108 IAVIAPFFLKPWNKDVLINFLKEVAAAAPALPFYYYHIPALTGVKIR 154

GO:0008747 "N-acetylneuraminate lyase activity" evidence=ISS

GO:0019262 "N-acetylneuraminate catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|Q5ZKD4 NPL "N-acetylneuraminate lyase" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/107 (37%), Positives = 61/107 (57%)

Query:   133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             VNGTTGEG+S++  ERK   E WM + K     V++ +G     E  ELA+HA ++    
Sbjct:    47 VNGTTGEGLSLSIQERKQLAEEWMCQGKGKLDHVIIHVGALSLLESQELARHAAAIGASG 106

Query:   193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
             +  +   FF P + ++L+ +L+ V   AP  P +YYHIP  T V ++
Sbjct:   107 IAVIAPSFFKPTNKDELLGFLQKVASEAPTVPFYYYHIPAMTGVKIR 153

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019262 "N-acetylneuraminate catabolic process" evidence=IEA

GO:0008747 "N-acetylneuraminate lyase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	239
cd00954	288	cd00954, NAL, N-Acetylneuraminic acid aldolase, al	3e-25
COG0329	299	COG0329, DapA, Dihydrodipicolinate synthase/N-acet	7e-20
cd00408	281	cd00408, DHDPS-like, Dihydrodipicolinate synthase	2e-19
cd00953	279	cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconat	5e-12
PRK04147	293	PRK04147, PRK04147, N-acetylneuraminate lyase; Pro	2e-10
TIGR00683	290	TIGR00683, nanA, N-acetylneuraminate lyase	5e-09
pfam00701	289	pfam00701, DHDPS, Dihydrodipicolinate synthetase f	1e-08
TIGR02313	294	TIGR02313, HpaI-NOT-DapA, 2,4-dihydroxyhept-2-ene-	4e-06
cd00950	284	cd00950, DHDPS, Dihydrodipicolinate synthase (DHDP	4e-06
TIGR00674	285	TIGR00674, dapA, dihydrodipicolinate synthase	5e-06
PRK03170	292	PRK03170, PRK03170, dihydrodipicolinate synthase;	6e-05

>gnl|CDD|188641 cd00954, NAL, N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL)

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           VNG+TGEG  ++  ERK   E     AK    T++  +G    +E  ELAKHAE L   A
Sbjct: 41  VNGSTGEGFLLSVEERKQIAEIVAEAAKGK-VTLIAHVGSLNLKESQELAKHAEELGYDA 99

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           +  +   ++   S E++ DY R++  AA + P+  YHIP  T V L
Sbjct: 100 ISAITPFYY-KFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNL 144

N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. Length = 288

>gnl|CDD|223406 COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 85.8 bits (213), Expect = 7e-20
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +V GTTGE  ++T  ERK  LEA +         V+  +G     E +ELAKHAE L   
Sbjct: 43  VVLGTTGESPTLTLEERKEVLEAVVEAVGGRV-PVIAGVGSNSTAEAIELAKHAEKLGAD 101

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
            +L +P  ++   S E L  + + + EA    P+  Y+IP  T V L
Sbjct: 102 GILVVPP-YYNKPSQEGLYAHFKAIAEAVD-LPVILYNIPSRTGVDL 146

Length = 299

>gnl|CDD|188630 cd00408, DHDPS-like, Dihydrodipicolinate synthase family

 Score = 84.1 bits (209), Expect = 2e-19
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V GTTGE  ++T  ERK  +EA +         V+  +G    +E +ELA+HAE      
Sbjct: 37  VLGTTGEAPTLTDEERKEVIEAVVEAVAG-RVPVIAGVGANSTREAIELARHAEEAGADG 95

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           VL +P  ++   S E +V + + V + A   P+  Y+IP  T V L
Sbjct: 96  VLVVPP-YYNKPSQEGIVAHFKAVAD-ASDLPVILYNIPGRTGVDL 139

Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. Length = 281

>gnl|CDD|188640 cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconate) aldolases found in archaea

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V GTTG G S++  E+   L+A  ++       V+ Q+G    +E +ELA+ A+S  ++A
Sbjct: 39  VAGTTGLGPSLSFQEKLELLKA-YSDITDK---VIFQVGSLNLEESIELARAAKSFGIYA 94

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
           +  LP  +F     E L+ Y  D+       P F Y+ P  T
Sbjct: 95  IASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIYNYPKAT 133

KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. Length = 279

>gnl|CDD|179749 PRK04147, PRK04147, N-acetylneuraminate lyase; Provisional

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE   ++T E+K  LE    EAK     ++ Q+G     E  ELAK+A  L   A
Sbjct: 44  VGGSTGEAFLLSTEEKKQVLEIVAEEAKGK-VKLIAQVGSVNTAEAQELAKYATELGYDA 102

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           +  +   F+ P S E++ DY R++ ++A   P+  Y+IP  T V L
Sbjct: 103 ISAVTP-FYYPFSFEEICDYYREIIDSA-DNPMIVYNIPALTGVNL 146

Length = 293

>gnl|CDD|188072 TIGR00683, nanA, N-acetylneuraminate lyase

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 129 IDQM------VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELA 182
           ID+M      V G+TGE   ++T E+K        EAK     ++ Q+G    +E VEL 
Sbjct: 31  IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQ-IALIAQVGSVNLKEAVELG 89

Query: 183 KHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           K+A  L    +  +   F+   S  ++  Y   +        +  Y IP  T V +
Sbjct: 90  KYATELGYDCLSAVTP-FYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNM 144

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 290

>gnl|CDD|201403 pfam00701, DHDPS, Dihydrodipicolinate synthetase family

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 129 IDQMVN-----GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAK 183
           I++  +     GTTGE  +++T E +  +E  + EAK     V+   G    +E + LA+
Sbjct: 32  INKGADGLFVGGTTGESFTLSTEEHEQLIEITVDEAKGR-IPVIAGTGSNSTREAIHLAQ 90

Query: 184 HAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            AE+     VL +   ++   S E L  + + +  AA   P+  Y++P  T   L 
Sbjct: 91  LAEAAGADGVLAVTP-YYNKPSQEGLYQHFKAIA-AATDLPVILYNVPSRTGQDLT 144

This family has a TIM barrel structure. Length = 289

>gnl|CDD|131366 TIGR02313, HpaI-NOT-DapA, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V GT+GE  S+T  ERK  +E  + +            G     E +EL K AE     A
Sbjct: 40  VGGTSGEPGSLTLEERKQAIENAIDQIAGR-IPFAPGTGALNHDETLELTKFAEEAGADA 98

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
            + +   +  P + E L D+  +V +A P  P+  Y+IP
Sbjct: 99  AMVIVPYYNKP-NQEALYDHFAEVADAVPDFPIIIYNIP 136

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. Length = 294

>gnl|CDD|188637 cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS)

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V GTTGE  +++  E +  +EA + EA      V+   G     E +EL K AE     A
Sbjct: 40  VCGTTGESPTLSDEEHEAVIEA-VVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADA 98

Query: 193 VLCLPELFFTPA----SVEDLVDYLRDVGEAAPATPLFYYHIP 231
            L +     TP     S E L  + + + EA    P+  Y++P
Sbjct: 99  ALVV-----TPYYNKPSQEGLYAHFKAIAEATDL-PVILYNVP 135

Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. Length = 284

>gnl|CDD|129757 TIGR00674, dapA, dihydrodipicolinate synthase

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
           GTTGE  +++  E K  +E  +         V+   G    +E + L K AE +     L
Sbjct: 40  GTTGESPTLSHEEHKKVIEFVVDLVNGRV-PVIAGTGSNATEEAISLTKFAEDVGADGFL 98

Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
            +   +  P + E L  + + + E     P+  Y++P  T V+L 
Sbjct: 99  VVTPYYNKP-TQEGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLY 141

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment [Amino acid biosynthesis, Aspartate family]. Length = 285

>gnl|CDD|235107 PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V GTTGE  ++T  E +  + A +         V+   G     E +EL K AE      
Sbjct: 41  VVGTTGESPTLTHEEHEELIRAVVEAVN-GRVPVIAGTGSNSTAEAIELTKFAEKAGADG 99

Query: 193 VLC 195
            L 
Sbjct: 100 ALV 102

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	100.0
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	100.0
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	99.98
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	99.98
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	99.98
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	99.97
PRK04147	293	N-acetylneuraminate lyase; Provisional	99.97
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	99.97
PLN02417	280	dihydrodipicolinate synthase	99.97
PRK03170	292	dihydrodipicolinate synthase; Provisional	99.97
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	99.97
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	99.97
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	99.96
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	99.96
cd00953	279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	99.96
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	99.96
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	99.6
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	99.47
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	99.17
cd08210	364	RLP_RrRLP Ribulose bisphosphate carboxylase like p	99.07
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	98.89
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	97.31
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	96.64
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	96.46
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	96.43
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	96.27
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	96.0
PLN02746	347	hydroxymethylglutaryl-CoA lyase	95.99
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.96
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	95.73
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	95.48
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	95.29
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	95.24
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	95.21
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	95.2
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	95.14
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	95.1
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	95.03
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	94.9
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	94.79
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	94.64
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	94.62
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	94.33
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	94.24
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	94.2
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	94.13
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	93.89
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	93.84
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	93.67
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	93.57
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	93.53
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	93.5
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	93.43
cd08206	414	RuBisCO_large_I_II_III Ribulose bisphosphate carbo	93.35
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	93.29
PRK04208	468	rbcL ribulose bisophosphate carboxylase; Reviewed	93.27
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	93.09
TIGR03326	412	rubisco_III ribulose bisphosphate carboxylase, typ	93.02
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	92.97
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	92.95
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	92.89
COG0826	347	Collagenase and related proteases [Posttranslation	92.59
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	92.58
PRK12344	524	putative alpha-isopropylmalate/homocitrate synthas	92.58
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	92.45
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	92.41
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	92.39
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	92.31
TIGR00977	526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	92.17
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	92.02
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	91.95
PRK00915	513	2-isopropylmalate synthase; Validated	91.89
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	91.86
cd08148	366	RuBisCO_large Ribulose bisphosphate carboxylase la	91.83
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	91.78
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	91.72
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	91.7
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	91.68
PRK15063	428	isocitrate lyase; Provisional	91.65
PRK09389	488	(R)-citramalate synthase; Provisional	91.26
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	91.13
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	91.06
CHL00040	475	rbcL ribulose-1,5-bisphosphate carboxylase/oxygena	91.06
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	91.0
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	90.83
PRK07226	267	fructose-bisphosphate aldolase; Provisional	90.69
PRK14041	467	oxaloacetate decarboxylase; Provisional	90.2
cd08213	412	RuBisCO_large_III Ribulose bisphosphate carboxylas	90.14
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	90.13
cd06312	271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	90.04
PF00016	309	RuBisCO_large: Ribulose bisphosphate carboxylase l	89.8
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	89.73
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	89.68
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	89.58
TIGR02634	302	xylF D-xylose ABC transporter, substrate-binding p	89.54
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	89.48
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	89.45
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	89.42
cd08208	424	RLP_Photo Ribulose bisphosphate carboxylase like p	89.42
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	89.22
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	89.12
PRK09816	26	thrL thr operon leader peptide; Provisional	89.11
cd08209	391	RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent	88.93
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	88.75
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	88.58
cd06322	267	PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b	88.57
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	88.55
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	88.54
PLN02321	632	2-isopropylmalate synthase	88.49
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	88.41
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	88.41
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	88.35
cd06289	268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	88.33
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	88.2
cd06318	282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	88.15
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	88.1
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	88.05
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	88.02
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	87.99
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	87.95
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	87.88
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	87.84
cd06302	298	PBP1_LsrB_Quorum_Sensing Periplasmic binding domai	87.69
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	87.59
PRK15408	336	autoinducer 2-binding protein lsrB; Provisional	87.54
cd08207	406	RLP_NonPhot Ribulose bisphosphate carboxylase like	87.47
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	87.42
PRK12331	448	oxaloacetate decarboxylase; Provisional	87.34
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	87.31
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	87.24
TIGR02637	302	RhaS rhamnose ABC transporter, rhamnose-binding pr	87.24
cd06317	275	PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi	87.22
cd01538	288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	87.14
PRK09250	348	fructose-bisphosphate aldolase; Provisional	87.13
cd08212	450	RuBisCO_large_I Ribulose bisphosphate carboxylase	87.04
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	86.96
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	86.93
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	86.9
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	86.9
PLN02591	250	tryptophan synthase	86.77
cd06309	273	PBP1_YtfQ_like Periplasmic binding domain of ABC-t	86.76
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	86.73
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	86.63
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	86.5
cd06316	294	PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi	86.47
cd06321	271	PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b	86.46
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	86.43
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	86.28
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	86.26
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	86.25
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	86.21
cd03307	326	Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al	86.05
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	85.81
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	85.71
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	85.65
PLN02433	345	uroporphyrinogen decarboxylase	85.57
cd06324	305	PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b	85.54
COG1879	322	RbsB ABC-type sugar transport system, periplasmic	85.53
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	85.52
PRK07226	267	fructose-bisphosphate aldolase; Provisional	85.5
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	85.48
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	85.42
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	85.4
PRK08999	312	hypothetical protein; Provisional	85.35
cd06301	272	PBP1_rhizopine_binding_like Periplasmic binding pr	85.33
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	85.32
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	85.28
PRK07315	293	fructose-bisphosphate aldolase; Provisional	85.26
PRK12330	499	oxaloacetate decarboxylase; Provisional	85.24
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	85.18
cd03409	101	Chelatase_Class_II Class II Chelatase: a family of	85.15
cd01541	273	PBP1_AraR Ligand-binding domain of DNA transcripti	85.09
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	85.07
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	85.05
cd00578	452	L-fuc_L-ara-isomerases L-fucose isomerase (FucIase	84.96
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	84.76
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	84.75
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	84.74
PLN02424	332	ketopantoate hydroxymethyltransferase	84.72
PRK00208	250	thiG thiazole synthase; Reviewed	84.44
cd06315	280	PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi	84.44
PRK10703	341	DNA-binding transcriptional repressor PurR; Provis	84.41
PLN02535	364	glycolate oxidase	84.36
PRK09485	304	mmuM homocysteine methyltransferase; Provisional	84.28
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	84.25
PRK10653	295	D-ribose transporter subunit RbsB; Provisional	84.19
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	84.19
PRK06806	281	fructose-bisphosphate aldolase; Provisional	84.18
cd01539	303	PBP1_GGBP Periplasmic glucose/galactose-binding pr	84.17
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	84.17
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	84.03
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	83.94
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	83.91
PLN02428	349	lipoic acid synthase	83.88
cd06313	272	PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi	83.83
PRK12928	290	lipoyl synthase; Provisional	83.82
PLN03228	503	methylthioalkylmalate synthase; Provisional	83.81
PRK13523	337	NADPH dehydrogenase NamA; Provisional	83.7
PLN02489	335	homocysteine S-methyltransferase	83.67
cd06308	270	PBP1_sensor_kinase_like Periplasmic binding domain	83.67
cd08211	439	RuBisCO_large_II Ribulose bisphosphate carboxylase	83.53
cd06270	268	PBP1_GalS_like Ligand binding domain of DNA transc	83.48
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	83.43
PF06187	382	DUF993: Protein of unknown function (DUF993); Inte	83.43
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	83.42
PRK09282	592	pyruvate carboxylase subunit B; Validated	83.38
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	83.37
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	83.34
cd06299	265	PBP1_LacI_like_13 Ligand-binding domain of DNA-bin	83.31
cd06311	274	PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi	83.3
cd06274	264	PBP1_FruR Ligand binding domain of DNA transcripti	83.17
PF08254	22	Leader_Thr: Threonine leader peptide; InterPro: IP	83.15
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	83.01
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	83.0
PRK06252	339	methylcobalamin:coenzyme M methyltransferase; Vali	82.98
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	82.72
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	82.71
cd06285	265	PBP1_LacI_like_7 Ligand-binding domain of uncharac	82.67
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	82.61
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	82.56
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	82.56
PRK10355	330	xylF D-xylose transporter subunit XylF; Provisiona	82.47
cd06319	277	PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b	82.41
cd07896	174	Adenylation_kDNA_ligase_like Adenylation domain of	82.36
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	82.3
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	82.26
COG2159	293	Predicted metal-dependent hydrolase of the TIM-bar	82.16
TIGR00973	494	leuA_bact 2-isopropylmalate synthase, bacterial ty	82.13
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	82.1
PRK12581	468	oxaloacetate decarboxylase; Provisional	81.98
cd01540	289	PBP1_arabinose_binding Periplasmic L-arabinose-bin	81.87
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	81.8
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	81.55
PRK14024	241	phosphoribosyl isomerase A; Provisional	81.54
TIGR03332	407	salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosp	81.4
cd06275	269	PBP1_PurR Ligand-binding domain of purine represso	81.32
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	81.32
PRK14743	26	thrL thr operon leader peptide; Provisional	81.3
PTZ00413	398	lipoate synthase; Provisional	81.25
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	81.2
PRK09549	407	mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno	81.16
PRK11303	328	DNA-binding transcriptional regulator FruR; Provis	81.11
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	81.1
PRK08185	283	hypothetical protein; Provisional	81.08
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	81.06
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	80.98
PF04909	273	Amidohydro_2: Amidohydrolase; InterPro: IPR006992	80.93
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	80.91
TIGR01464	338	hemE uroporphyrinogen decarboxylase. This model re	80.89
PRK09250	348	fructose-bisphosphate aldolase; Provisional	80.88
PRK05481	289	lipoyl synthase; Provisional	80.78
PRK10605	362	N-ethylmaleimide reductase; Provisional	80.72
TIGR02077	26	thr_lead_pep thr operon leader peptide. This famil	80.61
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	80.49
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	80.37
TIGR02417	327	fruct_sucro_rep D-fructose-responsive transcriptio	80.29
PRK08227	264	autoinducer 2 aldolase; Validated	80.27
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	80.19
cd06298	268	PBP1_CcpA_like Ligand-binding domain of the catabo	80.14
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	80.13
cd06296	270	PBP1_CatR_like Ligand-binding domain of a LacI-lik	80.08

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.6e-34  Score=261.53  Aligned_cols=133  Identities=33%  Similarity=0.452  Sum_probs=123.0

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  +|++||++++.+.++|++                    -.|++|++++|||||+++||.|||.++++.+++.++|
T Consensus        13 vTPF~~dg~vD~~a~~~lv~~li--------------------~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g   72 (299)
T COG0329          13 VTPFDEDGSVDEEALRRLVEFLI--------------------AAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG   72 (299)
T ss_pred             ccCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC
Confidence            455  467788888888877773                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|+++++|+++++++++|+++|+|++|+.||||+++ +++++++||++|++++ ++|+||||+|.+||++++
T Consensus        73 -rvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~-~~~gl~~hf~~ia~a~-~lPvilYN~P~~tg~~l~  147 (299)
T COG0329          73 -RVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKP-SQEGLYAHFKAIAEAV-DLPVILYNIPSRTGVDLS  147 (299)
T ss_pred             -CCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCC-ChHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 999999999999999885

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=100.00  E-value=2.6e-33  Score=254.41  Aligned_cols=134  Identities=25%  Similarity=0.318  Sum_probs=124.2

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  +++.||++.+.++++|++                    -.|+.|++++|+|||+++||.+||.++++.+++.++|
T Consensus         9 ~TPf~~dg~iD~~~l~~lv~~~~--------------------~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g   68 (294)
T TIGR02313         9 ITPFKRNGDIDEEALRELIEFQI--------------------EGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG   68 (294)
T ss_pred             eCCcCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC
Confidence            445  688888888888888873                    2456789999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+||+++|++++++++++|+++|||++|++||+|+++ +++++++||++|++++|++||++||+|..||++|+
T Consensus        69 -~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~-~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~  144 (294)
T TIGR02313        69 -RIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKP-NQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIA  144 (294)
T ss_pred             -CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCC-CHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCC
Confidence             99999999999999999999999999999999999999999 99999999999999997899999999999999875

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=99.98  E-value=7.5e-33  Score=253.19  Aligned_cols=129  Identities=17%  Similarity=0.228  Sum_probs=119.8

Q ss_pred             cccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE
Q psy9602          89 VMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV  168 (239)
Q Consensus        89 ~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa  168 (239)
                      ++||++.+.++++|++                    -.|+.|++++|||||+++||.|||+++++.+++.++| ++|||+
T Consensus        24 g~iD~~~l~~lv~~li--------------------~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-rvpvi~   82 (309)
T cd00952          24 DTVDLDETARLVERLI--------------------AAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG-RVPVFV   82 (309)
T ss_pred             CCcCHHHHHHHHHHHH--------------------HcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC-CCCEEE
Confidence            6788888877777773                    2566789999999999999999999999999999999 999999


Q ss_pred             ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         169 QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       169 GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+++++|+++++++++|+++|||++|++||+|+++ +++++++||++|++++|++||+|||+|..||++|+
T Consensus        83 Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~-~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~  152 (309)
T cd00952          83 GATTLNTRDTIARTRALLDLGADGTMLGRPMWLPL-DVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFP  152 (309)
T ss_pred             EeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCC-CHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCC
Confidence            99999999999999999999999999999999999 99999999999999985699999999999999875

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=99.98  E-value=1.7e-32  Score=247.47  Aligned_cols=131  Identities=34%  Similarity=0.484  Sum_probs=122.7

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT  165 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp  165 (239)
                      +++.||++.+.++++|++                    -. |+.|++++|++||+++||.+||.++++.+++.+++ ++|
T Consensus        14 ~dg~iD~~~~~~~i~~l~--------------------~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-~~~   72 (288)
T cd00954          14 ENGEINEDVLRAIVDYLI--------------------EKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-KVT   72 (288)
T ss_pred             CCCCCCHHHHHHHHHHHH--------------------hcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCe
Confidence            678888888888888883                    23 56789999999999999999999999999999999 999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||+|+++.+++++++++++|+++|||++|++||+|+++ +++++++||++|++++|++||++||+|..||++|+
T Consensus        73 viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~-~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~  145 (288)
T cd00954          73 LIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKF-SFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLT  145 (288)
T ss_pred             EEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCC
Confidence            99999999999999999999999999999999999998 99999999999999997899999999999999875

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=99.98  E-value=1.7e-32  Score=248.73  Aligned_cols=131  Identities=24%  Similarity=0.350  Sum_probs=121.3

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcC-CCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAP-IIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT  165 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~g-g~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp  165 (239)
                      ++++||++++.++++|++                    -.| +.|++++|||||+++||.+||.++++.+++.+++ ++|
T Consensus        14 ~dg~iD~~~~~~~i~~~i--------------------~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-~~p   72 (290)
T TIGR00683        14 EDGTINEKGLRQIIRHNI--------------------DKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIA   72 (290)
T ss_pred             CCCCcCHHHHHHHHHHHH--------------------hCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC-CCc
Confidence            677888888888888772                    244 5688999999999999999999999999999999 999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||+||++.+++++++++++|+++|||++|++||+|+++ +++++++||++|+++++++||+|||+|..||++|+
T Consensus        73 vi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~-~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~  145 (290)
T TIGR00683        73 LIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF-SFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMG  145 (290)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC-CHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcC
Confidence            99999999999999999999999999999999999999 99999999999999876799999999999999885

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=99.97  E-value=3.3e-32  Score=245.00  Aligned_cols=130  Identities=25%  Similarity=0.347  Sum_probs=122.7

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++.+.++++|++                    -.|+.|++++|++||+++||.+||+++++.+++.+++ ++||
T Consensus        12 ~~g~iD~~~~~~~i~~l~--------------------~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~v   70 (285)
T TIGR00674        12 EDGSVDFAALEKLIDFQI--------------------ENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-RVPV   70 (285)
T ss_pred             CCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-CCeE
Confidence            688999999998888883                    2466789999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|+++.|++++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||++||+|..||+++|
T Consensus        71 i~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~-~~~~i~~~~~~i~~~~-~~pi~lYn~P~~tg~~l~  141 (285)
T TIGR00674        71 IAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKP-TQEGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLY  141 (285)
T ss_pred             EEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC-CHHHHHHHHHHHHhcC-CCCEEEEECcHHhcCCCC
Confidence            9999999999999999999999999999999999999 9999999999999999 899999999999999875

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=99.97  E-value=3.6e-32  Score=245.89  Aligned_cols=129  Identities=32%  Similarity=0.479  Sum_probs=119.5

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc--CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCc
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA--PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGF  164 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~--gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rv  164 (239)
                      ++++||++.+.++++|+                     ++  |+.|++++|++||+++||.+||.++++.+++.+++ ++
T Consensus        17 ~dg~iD~~~~~~li~~l---------------------~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-~~   74 (293)
T PRK04147         17 EDGQIDEQGLRRLVRFN---------------------IEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-KV   74 (293)
T ss_pred             CCCCcCHHHHHHHHHHH---------------------HhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-CC
Confidence            56777777777776666                     45  56689999999999999999999999999999999 99


Q ss_pred             eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |||+|+++.+++++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||++||+|..||++|+
T Consensus        75 ~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~-~~~~l~~~f~~va~a~-~lPv~iYn~P~~tg~~l~  147 (293)
T PRK04147         75 KLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPF-SFEEICDYYREIIDSA-DNPMIVYNIPALTGVNLS  147 (293)
T ss_pred             CEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC-CHHHHHHHHHHHHHhC-CCCEEEEeCchhhccCCC
Confidence            999999999999999999999999999999999999999 9999999999999999 899999999999999875

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=99.97  E-value=1.1e-31  Score=239.33  Aligned_cols=133  Identities=31%  Similarity=0.432  Sum_probs=124.5

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|++||+++||.+||.++++.+++.+++
T Consensus         6 ~TPf~~dg~iD~~~~~~~i~~l~--------------------~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~   65 (281)
T cd00408           6 VTPFTADGEVDLDALRRLVEFLI--------------------EAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG   65 (281)
T ss_pred             eCCcCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC
Confidence            445  789999999999999883                    2466789999999999999999999999999999998


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|+++.+++++++++++|+++|+|++|++||+|+++ +++++++||++|++++ ++||+|||+|..||++++
T Consensus        66 -~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~-~~~~~~~~~~~ia~~~-~~pi~iYn~P~~tg~~l~  140 (281)
T cd00408          66 -RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKP-SQEGIVAHFKAVADAS-DLPVILYNIPGRTGVDLS  140 (281)
T ss_pred             -CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCC-CHHHHHHHHHHHHhcC-CCCEEEEECccccCCCCC
Confidence             99999999999999999999999999999999999999998 9999999999999998 899999999999999875

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PLN02417 dihydrodipicolinate synthase

Probab=99.97  E-value=1.3e-31  Score=241.58  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=120.9

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  +++.||++.+.++++|++                    -.|+.|++++||+||+++||.+||.++++.+++.+++
T Consensus        10 ~TPf~~~g~iD~~~~~~~i~~l~--------------------~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~   69 (280)
T PLN02417         10 KTPYLPDGRFDLEAYDSLVNMQI--------------------ENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG   69 (280)
T ss_pred             eCCcCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC
Confidence            455  678888888888888873                    2466789999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++++||+++++++++|+++|||++|++||+|+++ +++++++||++|+++  . ||++||+|..||++|+
T Consensus        70 -~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~-~~~~i~~~f~~va~~--~-pi~lYn~P~~tg~~l~  142 (280)
T PLN02417         70 -KIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKT-SQEGLIKHFETVLDM--G-PTIIYNVPGRTGQDIP  142 (280)
T ss_pred             -CCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCC-CHHHHHHHHHHHHhh--C-CEEEEEChhHhCcCCC
Confidence             99999999999999999999999999999999999999999 999999999999996  4 9999999999999875

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=99.97  E-value=3.4e-31  Score=238.69  Aligned_cols=130  Identities=25%  Similarity=0.345  Sum_probs=120.4

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++.+.+.++|++                    -.|+.|++++|++||+++||.+||.++++.+++.+++ ++||
T Consensus        15 ~dg~iD~~~l~~~i~~l~--------------------~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-~~~v   73 (292)
T PRK03170         15 EDGSVDFAALRKLVDYLI--------------------ANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-RVPV   73 (292)
T ss_pred             CCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-CCcE
Confidence            677788888777777772                    2466689999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+||++.+++++++++++|+++|+|++|++||+|+.+ +++++++||++|++++ ++||++||+|..||++||
T Consensus        74 i~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~-~~~~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~  144 (292)
T PRK03170         74 IAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKP-TQEGLYQHFKAIAEAT-DLPIILYNVPGRTGVDIL  144 (292)
T ss_pred             EeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCC-CHHHHHHHHHHHHhcC-CCCEEEEECccccCCCCC
Confidence            9999999999999999999999999999999999998 9999999999999999 899999999999999875

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=99.97  E-value=4e-31  Score=236.74  Aligned_cols=130  Identities=25%  Similarity=0.361  Sum_probs=121.0

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      +++.||++++.+.++|++                    -.|+.|++++|++||+++||.+||+++++.+++.+++ ++||
T Consensus        14 ~dg~iD~~~~~~~i~~l~--------------------~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-~~~v   72 (284)
T cd00950          14 DDGSVDFDALERLIEFQI--------------------ENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-RVPV   72 (284)
T ss_pred             CCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-CCcE
Confidence            678888888888888772                    2456688999999999999999999999999999998 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|+++.|++++++++++|+++|+|++|++||+|+++ +++++++||++|++++ ++||+|||+|..||++||
T Consensus        73 i~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~-~~~~l~~~~~~ia~~~-~~pi~lYn~P~~~g~~ls  143 (284)
T cd00950          73 IAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKP-SQEGLYAHFKAIAEAT-DLPVILYNVPGRTGVNIE  143 (284)
T ss_pred             EeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHhcC-CCCEEEEEChhHhCCCCC
Confidence            9999999999999999999999999999999999998 9999999999999998 899999999999999875

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=99.97  E-value=1.3e-31  Score=240.84  Aligned_cols=130  Identities=34%  Similarity=0.493  Sum_probs=117.6

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++++.+.++|++                    -.|+.|++++|++||+++||.+||.++++.+++.+++ ++||
T Consensus        15 ~dg~id~~~~~~~i~~l~--------------------~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~-~~~v   73 (289)
T PF00701_consen   15 ADGSIDEDALKRLIDFLI--------------------EAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG-RVPV   73 (289)
T ss_dssp             TTSSB-HHHHHHHHHHHH--------------------HTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT-SSEE
T ss_pred             CCcCcCHHHHHHHHHHHH--------------------HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC-ceEE
Confidence            677888888877777772                    2456689999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+||++.|++++++++++|+++|||++|++||+|+.+ +++++++||++|++++ ++||++||+|..||++||
T Consensus        74 i~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~-s~~~l~~y~~~ia~~~-~~pi~iYn~P~~tg~~ls  144 (289)
T PF00701_consen   74 IAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKP-SQEELIDYFRAIADAT-DLPIIIYNNPARTGNDLS  144 (289)
T ss_dssp             EEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSC-CHHHHHHHHHHHHHHS-SSEEEEEEBHHHHSSTSH
T ss_pred             EecCcchhHHHHHHHHHHHhhcCceEEEEeccccccc-hhhHHHHHHHHHHhhc-CCCEEEEECCCccccCCC
Confidence            9999999999999999999999999999999999998 9999999999999998 999999999999998874

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=99.96  E-value=7.9e-30  Score=231.18  Aligned_cols=126  Identities=23%  Similarity=0.290  Sum_probs=114.4

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++.++++++|++                    -.|+.|++++|+|||+++||.+||+++++.+++.+++ ++||
T Consensus        19 ~dg~iD~~~l~~li~~l~--------------------~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-~~pv   77 (296)
T TIGR03249        19 ADGSFDEAAYRENIEWLL--------------------GYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG-KVPV   77 (296)
T ss_pred             CCCCcCHHHHHHHHHHHH--------------------hcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC-CCcE
Confidence            677888888877777772                    2455689999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+||++ +|+++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||+|||   .||++|+
T Consensus        78 i~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~-s~~~i~~~f~~v~~a~-~~pvilYn---~~g~~l~  144 (296)
T TIGR03249        78 YTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLING-EQEGLYAHVEAVCEST-DLGVIVYQ---RDNAVLN  144 (296)
T ss_pred             EEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHhcc-CCCEEEEe---CCCCCCC
Confidence            999996 799999999999999999999999999999 9999999999999999 89999999   4577664

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=99.96  E-value=1e-29  Score=231.54  Aligned_cols=129  Identities=19%  Similarity=0.227  Sum_probs=115.8

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  +++.||++++.++++|++                    -.|+.|++++||+||+++||.+||+++++.+++.+++
T Consensus        16 vTPf~~dg~iD~~~l~~li~~l~--------------------~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~   75 (303)
T PRK03620         16 VTPFDADGSFDEAAYREHLEWLA--------------------PYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG   75 (303)
T ss_pred             eCCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC
Confidence            445  677888888888887773                    2456689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++. +++++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||+|||+|   |++||
T Consensus        76 -~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~-~~~~i~~~f~~va~~~-~lpi~lYn~~---g~~l~  146 (303)
T PRK03620         76 -RVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLTEA-PQEGLAAHVEAVCKST-DLGVIVYNRD---NAVLT  146 (303)
T ss_pred             -CCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEcCC---CCCCC
Confidence             9999999997 999999999999999999999999999998 9999999999999999 8999999976   45543

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea

Probab=99.96  E-value=2.8e-29  Score=226.40  Aligned_cols=124  Identities=30%  Similarity=0.429  Sum_probs=113.0

Q ss_pred             cccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE
Q psy9602          89 VMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV  168 (239)
Q Consensus        89 ~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa  168 (239)
                      ++||++.+.++++|++                    -.|++|++++|+|||+++||.+||+++++.+++.+ + +  ||+
T Consensus        15 g~iD~~~~~~li~~l~--------------------~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~-~--vi~   70 (279)
T cd00953          15 NKIDKEKFKKHCENLI--------------------SKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-D-K--VIF   70 (279)
T ss_pred             CCcCHHHHHHHHHHHH--------------------HcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-C-C--EEE
Confidence            8888888888888873                    25667899999999999999999999999999987 5 4  899


Q ss_pred             ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         169 QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       169 GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||++.+++++++++++|+++|||++|++||+|+.+.+++++++||++|++   ++||++||+|..||++|+
T Consensus        71 gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~---~lpv~iYn~P~~tg~~l~  138 (279)
T cd00953          71 QVGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIYNYPKATGYDIN  138 (279)
T ss_pred             EeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh---cCCEEEEeCccccCCCCC
Confidence            99999999999999999999999999999999883289999999999999   599999999999999875

This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=99.96  E-value=3.3e-29  Score=226.70  Aligned_cols=129  Identities=19%  Similarity=0.205  Sum_probs=116.1

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  +++.||++.+.++++|++                    -.|+.|++++||+||+++||.|||.++++.+++.+++
T Consensus         9 vTPf~~dg~iD~~~l~~l~~~l~--------------------~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~   68 (289)
T cd00951           9 VTHFDADGSFDEDAYRAHVEWLL--------------------SYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG   68 (289)
T ss_pred             ecCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC
Confidence            455  678888888888888772                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++. +|+++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||++||+|   |++|+
T Consensus        69 -~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~-~~~~i~~~f~~v~~~~-~~pi~lYn~~---g~~l~  139 (289)
T cd00951          69 -RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEA-PQEGLYAHVEAVCKST-DLGVIVYNRA---NAVLT  139 (289)
T ss_pred             -CCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHhcC-CCCEEEEeCC---CCCCC
Confidence             9999999997 999999999999999999999999999998 9999999999999999 8999999965   55553

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=99.60  E-value=1e-15  Score=126.90  Aligned_cols=99  Identities=15%  Similarity=0.017  Sum_probs=85.6

Q ss_pred             HHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC----HHHHHHHHHHHHhCCCCEEEE
Q psy9602         121 ITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC----FQEVVELAKHAESLNVHAVLC  195 (239)
Q Consensus       121 v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S----t~eAIelar~A~~aGAdaVlV  195 (239)
                      +++.++ |+.+++++|              ++++.+++..++.++||++|+++.+    ++++++++++|+++|||++++
T Consensus        19 ~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v   84 (201)
T cd00945          19 CDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV   84 (201)
T ss_pred             HHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence            334455 445788888              8888888887642599999999999    999999999999999999999


Q ss_pred             CCCCCCCCCC--HHHHHHHHHHHHhhC-CCCcEEEEeCCCCc
Q psy9602         196 LPELFFTPAS--VEDLVDYLRDVGEAA-PATPLFYYHIPMFT  234 (239)
Q Consensus       196 ~PP~y~~~~s--~e~iv~yf~~Vaeat-pdLPIiLYN~P~~T  234 (239)
                      .||+|+.+ +  ++++.+||+++++++ +++|+++||+|..+
T Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~  125 (201)
T cd00945          85 VINIGSLK-EGDWEEVLEEIAAVVEAADGGLPLKVILETRGL  125 (201)
T ss_pred             eccHHHHh-CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence            99999887 7  899999999999984 38999999999876

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=99.47  E-value=1.9e-14  Score=135.59  Aligned_cols=119  Identities=14%  Similarity=-0.050  Sum_probs=92.7

Q ss_pred             HHHhhHHhhhcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhc---CCCceEEEecCCCCHHHHHHHHHHHHhCCCC
Q psy9602         116 MLLVGITLRMAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAK---THGFTVMVQIGGTCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       116 ~l~~~v~~~~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~---G~rvpVIaGVg~~St~eAIelar~A~~aGAd  191 (239)
                      .|+..+.+...+|. ++...|++||..+|+.+||.++++.+++.++   |.+.++++++++ ++++++++++.|+++|+|
T Consensus       147 ~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~-~~~e~i~~a~~a~~~Gad  225 (367)
T cd08205         147 ELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITG-DPDELRRRADRAVEAGAN  225 (367)
T ss_pred             HHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-CHHHHHHHHHHHHHcCCC
Confidence            33344444566665 5669999999999999999999999999888   514455555554 579999999999999999


Q ss_pred             EEEECCCCCCCCCCHH-----H---HHHHHHH-------------------HHhhCCCCcEEEEeCCCCccccC
Q psy9602         192 AVLCLPELFFTPASVE-----D---LVDYLRD-------------------VGEAAPATPLFYYHIPMFTRVTL  238 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e-----~---iv~yf~~-------------------VaeatpdLPIiLYN~P~~TG~~L  238 (239)
                      ++||.||+|+.. ..+     +   ++.|+..                   |++.+ ++|+++||+|.- ++.+
T Consensus       226 ~vmv~~~~~g~~-~~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~Rla-Gad~~~~~~~~g-k~~~  296 (367)
T cd08205         226 ALLINPNLVGLD-ALRALAEDPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLA-GADAVIFPGPGG-RFPF  296 (367)
T ss_pred             EEEEeccccccc-HHHHHHhcCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHc-CCCccccCCCcc-CcCC
Confidence            999999998754 333     3   4455666                   88988 899999999964 6554

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=99.17  E-value=4.6e-10  Score=100.21  Aligned_cols=103  Identities=17%  Similarity=0.141  Sum_probs=88.2

Q ss_pred             HHhhhcCC-CCEEE--------eccccCCcCCCHHHHHHHHHHHHHHhcC-CCceEEEe-----cCCCCHHHHHHHHHHH
Q psy9602         121 ITLRMAPI-IDQMV--------NGTTGEGVSMTTAERKLNLEAWMTEAKT-HGFTVMVQ-----IGGTCFQEVVELAKHA  185 (239)
Q Consensus       121 v~~~~~gg-~glvV--------~GstGE~~sLT~eER~~li~~vve~~~G-~rvpVIaG-----Vg~~St~eAIelar~A  185 (239)
                      +...++.| .++.+        +|++||...++.||+.+.++.++++.++ .+++|+++     ++..+++++|+.++.+
T Consensus        90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay  169 (243)
T cd00377          90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAY  169 (243)
T ss_pred             HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHH
Confidence            33334544 57789        9999999999999999999999999875 37999999     6668999999999999


Q ss_pred             HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Q psy9602         186 ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF  233 (239)
Q Consensus       186 ~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~  233 (239)
                      +++|||++++.+|.     +    .++++.++++. ++|+++|+.|..
T Consensus       170 ~~AGAD~v~v~~~~-----~----~~~~~~~~~~~-~~Pl~~~~~~~~  207 (243)
T cd00377         170 AEAGADGIFVEGLK-----D----PEEIRAFAEAP-DVPLNVNMTPGG  207 (243)
T ss_pred             HHcCCCEEEeCCCC-----C----HHHHHHHHhcC-CCCEEEEecCCC
Confidence            99999999999876     2    27888889887 899999999864

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R

Probab=99.07  E-value=5.3e-10  Score=105.63  Aligned_cols=123  Identities=15%  Similarity=-0.026  Sum_probs=102.1

Q ss_pred             HHHHHHHHhhHHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhc----CCCceEEEecCCCCHHHHHHHHHHH
Q psy9602         111 LLLTCMLLVGITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAK----THGFTVMVQIGGTCFQEVVELAKHA  185 (239)
Q Consensus       111 ~~~~~~l~~~v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~----G~rvpVIaGVg~~St~eAIelar~A  185 (239)
                      ....+.|+..+.....+|.+++ ..++.||..+++.+||.+++..+++.+.    + ++++++++++. +.+++++++.|
T Consensus       137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~-~~~y~~Nita~-~~em~~ra~~a  214 (364)
T cd08210         137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGG-RTLYAPNVTGP-PTQLLERARFA  214 (364)
T ss_pred             cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCC-cceEEEecCCC-HHHHHHHHHHH
Confidence            3455567677777778888766 9999999999999999999999998877    6 89999999987 66999999999


Q ss_pred             HhCCCCEEEECCCCCC-----CCCCHHHH----HHH-------------------HHHHHhhCCCCcEEEEeCCCCcccc
Q psy9602         186 ESLNVHAVLCLPELFF-----TPASVEDL----VDY-------------------LRDVGEAAPATPLFYYHIPMFTRVT  237 (239)
Q Consensus       186 ~~aGAdaVlV~PP~y~-----~~~s~e~i----v~y-------------------f~~VaeatpdLPIiLYN~P~~TG~~  237 (239)
                      +++|++++|+.|+.|.     .. .++..    ..|                   |..|++.+ +.|+++||+|.- +++
T Consensus       215 ~~~Ga~~vMv~~~~~G~~~~~~l-~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~Rla-Gad~~~~~~~~g-~~~  291 (364)
T cd08210         215 KEAGAGGVLIAPGLTGLDTFREL-AEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLA-GADAVIFPNYGG-RFG  291 (364)
T ss_pred             HHcCCCEEEeecccchHHHHHHH-HhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHh-CCCEEEeCCCcC-Ccc
Confidence            9999999999999885     22 33444    445                   99999999 899999999953 554


Q ss_pred             C
Q psy9602         238 L  238 (239)
Q Consensus       238 L  238 (239)
                      +
T Consensus       292 ~  292 (364)
T cd08210         292 F  292 (364)
T ss_pred             C
Confidence            4

rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=98.89  E-value=6.4e-09  Score=95.44  Aligned_cols=97  Identities=12%  Similarity=0.183  Sum_probs=82.6

Q ss_pred             cCCCCEEE-----------eccccCCcCCCHHHHHHHHHHHHHH-hcCCCceEEEe----cCCCCHHHHHHHHHHHHhCC
Q psy9602         126 APIIDQMV-----------NGTTGEGVSMTTAERKLNLEAWMTE-AKTHGFTVMVQ----IGGTCFQEVVELAKHAESLN  189 (239)
Q Consensus       126 ~gg~glvV-----------~GstGE~~sLT~eER~~li~~vve~-~~G~rvpVIaG----Vg~~St~eAIelar~A~~aG  189 (239)
                      .|+.|+.+           +|+.||...++.+|+.+.|+.++++ .++ +++|++.    +...+++++|+.++.++++|
T Consensus       104 aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~-~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAG  182 (285)
T TIGR02320       104 RGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTE-DFMIIARVESLILGKGMEDALKRAEAYAEAG  182 (285)
T ss_pred             cCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCC-CeEEEEecccccccCCHHHHHHHHHHHHHcC
Confidence            34457777           7888899999999999999999998 445 7999999    55678999999999999999


Q ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         190 VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       190 AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ||++++.   +... +.+++..+++.+....|++|+++
T Consensus       183 AD~ifv~---~~~~-~~~ei~~~~~~~~~~~p~~pl~~  216 (285)
T TIGR02320       183 ADGIMIH---SRKK-DPDEILEFARRFRNHYPRTPLVI  216 (285)
T ss_pred             CCEEEec---CCCC-CHHHHHHHHHHhhhhCCCCCEEE
Confidence            9999996   3234 88999999999987677889875

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.31  E-value=0.0025  Score=59.24  Aligned_cols=88  Identities=18%  Similarity=0.149  Sum_probs=69.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE---CCCCCCCC--CC-HHHHHHHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC---LPELFFTP--AS-VEDLVDYLRD  215 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV---~PP~y~~~--~s-~e~iv~yf~~  215 (239)
                      ....+++.+.++.+.+..   ++||++++...+.++..+.++.++++|+|++.+   .||.....  .. .+.+.+..++
T Consensus        83 n~g~d~~~~~i~~~~~~~---~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~  159 (334)
T PRK07565         83 YVGPEEYLELIRRAKEAV---DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRA  159 (334)
T ss_pred             CcCHHHHHHHHHHHHHhc---CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHH
Confidence            456899999998877754   479999999999999999999999999999999   55553211  02 2346677799


Q ss_pred             HHhhCCCCcEEEEeCCCC
Q psy9602         216 VGEAAPATPLFYYHIPMF  233 (239)
Q Consensus       216 VaeatpdLPIiLYN~P~~  233 (239)
                      |.+.+ ++||++.-.|..
T Consensus       160 v~~~~-~iPV~vKl~p~~  176 (334)
T PRK07565        160 VKSAV-SIPVAVKLSPYF  176 (334)
T ss_pred             HHhcc-CCcEEEEeCCCc
Confidence            99888 899999987754

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=96.64  E-value=0.039  Score=50.23  Aligned_cols=68  Identities=16%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCC-CCEEEE---C--CCC-CCCC-CCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLN-VHAVLC---L--PEL-FFTP-ASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aG-AdaVlV---~--PP~-y~~~-~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +.|+++.+.+.+.++-.+.++.++++| +|++-+   .  .++ .+.. .+.+.+.+.+++|.+++ +.||++==.|
T Consensus        91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~  166 (301)
T PRK07259         91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP  166 (301)
T ss_pred             CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC
Confidence            579999999999999999999999999 999977   2  232 1111 16788999999999998 8999875444

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=96.46  E-value=0.059  Score=49.38  Aligned_cols=107  Identities=12%  Similarity=0.070  Sum_probs=81.9

Q ss_pred             HHhhhcCCCC-EEEeccccCCcC-----CCHHHHHHHHHHHHHHhcCCCceEEEecC------CCCHHHHHHHHHHHHhC
Q psy9602         121 ITLRMAPIID-QMVNGTTGEGVS-----MTTAERKLNLEAWMTEAKTHGFTVMVQIG------GTCFQEVVELAKHAESL  188 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~~s-----LT~eER~~li~~vve~~~G~rvpVIaGVg------~~St~eAIelar~A~~a  188 (239)
                      ++...+.+.. +-+..+++|.+.     .|.+|-.+.+..+++.++.....|.+++.      ..+.+..+++++.+.++
T Consensus        80 ~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~  159 (280)
T cd07945          80 VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDL  159 (280)
T ss_pred             HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHc
Confidence            4444555554 556666666554     78899988888888887754567777776      34799999999999999


Q ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         189 NVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       189 GAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      |++.+.+.......  ++.++.++++.+.+..|++||-++-
T Consensus       160 G~~~i~l~DT~G~~--~P~~v~~l~~~l~~~~~~~~i~~H~  198 (280)
T cd07945         160 PIKRIMLPDTLGIL--SPFETYTYISDMVKRYPNLHFDFHA  198 (280)
T ss_pred             CCCEEEecCCCCCC--CHHHHHHHHHHHHhhCCCCeEEEEe
Confidence            99998888765533  7899999999999988778887653

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=96.43  E-value=0.078  Score=48.74  Aligned_cols=108  Identities=19%  Similarity=0.106  Sum_probs=79.6

Q ss_pred             hhHHhhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCHHHHHHHHH
Q psy9602         119 VGITLRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---------GTCFQEVVELAK  183 (239)
Q Consensus       119 ~~v~~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---------~~St~eAIelar  183 (239)
                      .+++..++.+.+ +-++-+++|     ....|.+|-.+.++.+++.++.....|.+.+.         ..+.+..+++++
T Consensus        83 ~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~  162 (287)
T PRK05692         83 KGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAE  162 (287)
T ss_pred             HHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence            355666666655 446667776     46678888888777777776643455543222         347899999999


Q ss_pred             HHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         184 HAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       184 ~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .+.++|+|.+.+.....+.  ++.++.+.++.+.+..|++||-++
T Consensus       163 ~~~~~G~d~i~l~DT~G~~--~P~~v~~lv~~l~~~~~~~~i~~H  205 (287)
T PRK05692        163 RLFALGCYEISLGDTIGVG--TPGQVRAVLEAVLAEFPAERLAGH  205 (287)
T ss_pred             HHHHcCCcEEEeccccCcc--CHHHHHHHHHHHHHhCCCCeEEEE
Confidence            9999999998888766543  789999999999999866887654

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=96.27  E-value=0.12  Score=46.92  Aligned_cols=107  Identities=13%  Similarity=0.070  Sum_probs=78.0

Q ss_pred             HhhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC------CCCHHHHHHHHHHHHhCC
Q psy9602         122 TLRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG------GTCFQEVVELAKHAESLN  189 (239)
Q Consensus       122 ~~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg------~~St~eAIelar~A~~aG  189 (239)
                      +...+.+.. +-+..++++     ....|.+|-.+.+...++.++.....|.++..      ..+.+..+++++.+.++|
T Consensus        85 ~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g  164 (273)
T cd07941          85 QALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG  164 (273)
T ss_pred             HHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC
Confidence            334555554 446666664     46778888888888887776653456666322      346788899999999999


Q ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         190 VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       190 AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      ++.+.+...... . +++++.++++.+.+..|++||-++-.
T Consensus       165 ~~~i~l~DT~G~-~-~P~~v~~lv~~l~~~~~~~~l~~H~H  203 (273)
T cd07941         165 ADWLVLCDTNGG-T-LPHEIAEIVKEVRERLPGVPLGIHAH  203 (273)
T ss_pred             CCEEEEecCCCC-C-CHHHHHHHHHHHHHhCCCCeeEEEec
Confidence            999887766543 3 78999999999999997788877543

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=96.00  E-value=0.19  Score=45.88  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             hHHhhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCHHHHHHHHHH
Q psy9602         120 GITLRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---------GTCFQEVVELAKH  184 (239)
Q Consensus       120 ~v~~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---------~~St~eAIelar~  184 (239)
                      +++..++.+.. +-++-+++|     ....|.+|-.+.+...++.++.....|.+++.         ..+.+..+++++.
T Consensus        78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~  157 (274)
T cd07938          78 GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAER  157 (274)
T ss_pred             HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence            45666666655 447777776     35667778777777777776653455543322         3478999999999


Q ss_pred             HHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         185 AESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       185 A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      +.++|+|.+-+.......  ++.++.++++.+.+..|++||-++-
T Consensus       158 ~~~~Ga~~i~l~DT~G~~--~P~~v~~lv~~l~~~~~~~~i~~H~  200 (274)
T cd07938         158 LLDLGCDEISLGDTIGVA--TPAQVRRLLEAVLERFPDEKLALHF  200 (274)
T ss_pred             HHHcCCCEEEECCCCCcc--CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence            999999998888766542  7899999999999998778887753

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=95.99  E-value=0.14  Score=48.74  Aligned_cols=108  Identities=17%  Similarity=0.102  Sum_probs=79.6

Q ss_pred             hhHHhhhcCCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---------CCCCHHHHHHHHH
Q psy9602         119 VGITLRMAPIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---------GGTCFQEVVELAK  183 (239)
Q Consensus       119 ~~v~~~~~gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---------g~~St~eAIelar  183 (239)
                      .+++..++.+.. +.++-+++|.+     ..|.+|-.+.+..+++.++.....|.+.+         +..+.+..+++++
T Consensus       125 ~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~  204 (347)
T PLN02746        125 KGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAK  204 (347)
T ss_pred             HHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHH
Confidence            456666776665 44555777654     47889988888888887765345664333         4457899999999


Q ss_pred             HHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         184 HAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       184 ~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .+.++|+|.+.+.......  ++.++.++++.|.+..|..||-++
T Consensus       205 ~~~~~Gad~I~l~DT~G~a--~P~~v~~lv~~l~~~~~~~~i~~H  247 (347)
T PLN02746        205 ELYDMGCYEISLGDTIGVG--TPGTVVPMLEAVMAVVPVDKLAVH  247 (347)
T ss_pred             HHHHcCCCEEEecCCcCCc--CHHHHHHHHHHHHHhCCCCeEEEE
Confidence            9999999999888766543  789999999999998854465553

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.96  E-value=0.12  Score=46.75  Aligned_cols=100  Identities=18%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             CCCCEEEeccccCCcCC-----------------------CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHH
Q psy9602         127 PIIDQMVNGTTGEGVSM-----------------------TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAK  183 (239)
Q Consensus       127 gg~glvV~GstGE~~sL-----------------------T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar  183 (239)
                      ++.|.++.+|..+-...                       ..++..+.++.....  . +.|+++.+...+.++..+.++
T Consensus        33 g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~--~-~~p~ivsi~g~~~~~~~~~a~  109 (296)
T cd04740          33 GKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLRE--F-GTPVIASIAGSTVEEFVEVAE  109 (296)
T ss_pred             CCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhc--C-CCcEEEEEecCCHHHHHHHHH
Confidence            44787777776654432                       124444444443332  2 579999999999999999999


Q ss_pred             HHHhCCCCEEEEC--CCCCC------CCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         184 HAESLNVHAVLCL--PELFF------TPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       184 ~A~~aGAdaVlV~--PP~y~------~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      .++++|+|++-+-  -|..-      .. +.+.+.+.+++|.+.+ ++||++==.|
T Consensus       110 ~~~~~G~d~iElN~~cP~~~~~g~~~~~-~~~~~~eiv~~vr~~~-~~Pv~vKl~~  163 (296)
T cd04740         110 KLADAGADAIELNISCPNVKGGGMAFGT-DPEAVAEIVKAVKKAT-DVPVIVKLTP  163 (296)
T ss_pred             HHHHcCCCEEEEECCCCCCCCCcccccC-CHHHHHHHHHHHHhcc-CCCEEEEeCC
Confidence            9999999999773  34431      12 6788889999999988 8999874333

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=95.73  E-value=0.25  Score=46.04  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC---CC---CCCCCCHHHHHHHHHHH
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP---EL---FFTPASVEDLVDYLRDV  216 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P---P~---y~~~~s~e~iv~yf~~V  216 (239)
                      ...+...+.++.+....   +.||++++...+.++-.+.++.++++|+|++-+--   |.   .+....++.+.+..++|
T Consensus        82 ~g~~~~~~~i~~~~~~~---~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v  158 (325)
T cd04739          82 LGPEEYLELIRRAKRAV---SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAV  158 (325)
T ss_pred             cCHHHHHHHHHHHHhcc---CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHH
Confidence            34566666555544322   47999999999999999999999999999997743   21   11110124567888999


Q ss_pred             HhhCCCCcEEEEeCCC
Q psy9602         217 GEAAPATPLFYYHIPM  232 (239)
Q Consensus       217 aeatpdLPIiLYN~P~  232 (239)
                      .+++ ++||++==-|.
T Consensus       159 ~~~~-~iPv~vKl~p~  173 (325)
T cd04739         159 KSAV-TIPVAVKLSPF  173 (325)
T ss_pred             Hhcc-CCCEEEEcCCC
Confidence            8888 89999875554

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=95.48  E-value=0.18  Score=46.87  Aligned_cols=83  Identities=12%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV  210 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv  210 (239)
                      +|+.+.-...+.+|..+=|+.++++..+.++-|++=+   ...+.+++|+.++.+.++|||++.+.-|.     +.+++.
T Consensus       121 cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~-----~~~~i~  195 (292)
T PRK11320        121 CGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT-----ELEMYR  195 (292)
T ss_pred             cCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC-----CHHHHH
Confidence            4666555667999999999999998754234444422   23469999999999999999999986432     556655


Q ss_pred             HHHHHHHhhCCCCcEE
Q psy9602         211 DYLRDVGEAAPATPLF  226 (239)
Q Consensus       211 ~yf~~VaeatpdLPIi  226 (239)
                      .    ++++. +.|++
T Consensus       196 ~----~~~~~-~~Pl~  206 (292)
T PRK11320        196 R----FADAV-KVPIL  206 (292)
T ss_pred             H----HHHhc-CCCEE
Confidence            4    55556 57873

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=95.29  E-value=0.37  Score=44.65  Aligned_cols=86  Identities=12%  Similarity=-0.037  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCC-CCEEEEC--CCCC-----CCCCCHHHHHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLN-VHAVLCL--PELF-----FTPASVEDLVDYL  213 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aG-AdaVlV~--PP~y-----~~~~s~e~iv~yf  213 (239)
                      +...+++.+.++...+...  +.|||+.+.+.+.++-.+.++.++++| ||++-+-  -|+.     +.. +.+.+.+..
T Consensus        73 n~g~~~~~~~i~~~~~~~~--~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~-d~~~~~~i~  149 (310)
T PRK02506         73 NLGFDYYLDYVLELQKKGP--NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAY-DFETTEQIL  149 (310)
T ss_pred             CcCHHHHHHHHHHHHhhcC--CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCcccccc-CHHHHHHHH
Confidence            3446677766665444332  489999999999999999999999998 9998863  2432     111 568889999


Q ss_pred             HHHHhhCCCCcEEEEeCC
Q psy9602         214 RDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       214 ~~VaeatpdLPIiLYN~P  231 (239)
                      +.|.+.+ +.||++==-|
T Consensus       150 ~~v~~~~-~~Pv~vKlsp  166 (310)
T PRK02506        150 EEVFTYF-TKPLGVKLPP  166 (310)
T ss_pred             HHHHHhc-CCccEEecCC
Confidence            9999988 7998874444

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=95.24  E-value=0.12  Score=46.55  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=67.4

Q ss_pred             HHhhhcCC-CCEEE----eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC-----CCCHHHHHHHHHHHHhCCC
Q psy9602         121 ITLRMAPI-IDQMV----NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG-----GTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       121 v~~~~~gg-~glvV----~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg-----~~St~eAIelar~A~~aGA  190 (239)
                      |....+.| .|+.+    .|+ +....++.+|..+=|+.++++..+.+.-|++=+-     ..+.+++|+.++.+.++||
T Consensus        91 v~~~~~aG~agi~IEDq~~~~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGA  169 (238)
T PF13714_consen   91 VRELERAGAAGINIEDQRCGH-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGA  169 (238)
T ss_dssp             HHHHHHCT-SEEEEESBSTTT-STT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHcCCcEEEeeccccCC-CCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCC
Confidence            34444444 45543    455 7777889999999999999998764555666443     3678999999999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      |++++..+    . +.+++..+-+    +. +.|+.+--.|
T Consensus       170 D~ifi~~~----~-~~~~i~~~~~----~~-~~Pl~v~~~~  200 (238)
T PF13714_consen  170 DMIFIPGL----Q-SEEEIERIVK----AV-DGPLNVNPGP  200 (238)
T ss_dssp             SEEEETTS----S-SHHHHHHHHH----HH-SSEEEEETTS
T ss_pred             CEEEeCCC----C-CHHHHHHHHH----hc-CCCEEEEcCC
Confidence            99998755    2 5667555444    44 4787765543

...

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=95.21  E-value=0.21  Score=45.61  Aligned_cols=77  Identities=18%  Similarity=0.230  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCC-------CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--------CHHHHHHHH
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGG-------TCFQEVVELAKHAESLNVHAVLCLPELFFTPA--------SVEDLVDYL  213 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~-------~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--------s~e~iv~yf  213 (239)
                      .++++.+.+.++. ++||.+=++.       .+.++++++++.+++.|+|.+-+....+..+.        ....-.++.
T Consensus       195 ~eii~avr~~~g~-d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~  273 (327)
T cd02803         195 LEIVAAVREAVGP-DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELA  273 (327)
T ss_pred             HHHHHHHHHHcCC-CceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHH
Confidence            4666667766655 6788774442       46899999999999999999998876554321        124456778


Q ss_pred             HHHHhhCCCCcEEE
Q psy9602         214 RDVGEAAPATPLFY  227 (239)
Q Consensus       214 ~~VaeatpdLPIiL  227 (239)
                      +.+.+.+ ++||+.
T Consensus       274 ~~ir~~~-~iPVi~  286 (327)
T cd02803         274 EKIKKAV-KIPVIA  286 (327)
T ss_pred             HHHHHHC-CCCEEE
Confidence            8888888 899876

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR02317 prpB methylisocitrate lyase

Probab=95.20  E-value=0.23  Score=45.97  Aligned_cols=83  Identities=14%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV  210 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv  210 (239)
                      +|+.+--...+.+|..+=|+.++++..+.++-|++=+   ...+.+++|+.++.+.++|||++.+.-|    . +.+++.
T Consensus       116 cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~----~-~~e~i~  190 (285)
T TIGR02317       116 CGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL----T-SLEEFR  190 (285)
T ss_pred             cCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC----C-CHHHHH
Confidence            4665544466999999999999998765223344422   3346999999999999999999999642    2 556654


Q ss_pred             HHHHHHHhhCCCCcEE
Q psy9602         211 DYLRDVGEAAPATPLF  226 (239)
Q Consensus       211 ~yf~~VaeatpdLPIi  226 (239)
                          .++++. +.|++
T Consensus       191 ----~~~~~i-~~Pl~  201 (285)
T TIGR02317       191 ----QFAKAV-KVPLL  201 (285)
T ss_pred             ----HHHHhc-CCCEE
Confidence                555566 47873

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=95.14  E-value=0.37  Score=43.30  Aligned_cols=88  Identities=19%  Similarity=0.195  Sum_probs=65.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC--CCCCCCC----CCHHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCL--PELFFTP----ASVEDLVDYLR  214 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~--PP~y~~~----~s~e~iv~yf~  214 (239)
                      ..+..++..+-++..... .. +.|+++.+...+.++.++.++.+++.|+|++-+-  -|.....    .+.+.+.+..+
T Consensus        78 ~~~g~~~~~~~i~~~~~~-~~-~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~  155 (289)
T cd02810          78 PNLGLDVWLQDIAKAKKE-FP-GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLK  155 (289)
T ss_pred             CCcCHHHHHHHHHHHHhc-cC-CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHH
Confidence            445667776666655443 12 5799999999999999999999999999999884  3443210    15678888899


Q ss_pred             HHHhhCCCCcEEEEeCC
Q psy9602         215 DVGEAAPATPLFYYHIP  231 (239)
Q Consensus       215 ~VaeatpdLPIiLYN~P  231 (239)
                      +|.+.+ +.||++==.|
T Consensus       156 ~vr~~~-~~pv~vKl~~  171 (289)
T cd02810         156 AVKAAV-DIPLLVKLSP  171 (289)
T ss_pred             HHHHcc-CCCEEEEeCC
Confidence            999888 8998875444

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=95.10  E-value=0.59  Score=41.78  Aligned_cols=105  Identities=14%  Similarity=0.050  Sum_probs=76.6

Q ss_pred             HHhhhcCCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCC
Q psy9602         121 ITLRMAPIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAd  191 (239)
                      ++...+.+.. +-+..+++|.+     ..|.+|-.+.+..+++.++.....|.++..   ..+.+..+++++.+.++|++
T Consensus        75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~  154 (259)
T cd07939          75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGAD  154 (259)
T ss_pred             HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCC
Confidence            3444555554 44777777753     567888776666666665543456666653   35589999999999999999


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .+.+.-.....  +++++.++++.+.+..| +||-++
T Consensus       155 ~i~l~DT~G~~--~P~~v~~lv~~l~~~~~-~~l~~H  188 (259)
T cd07939         155 RLRFADTVGIL--DPFTTYELIRRLRAATD-LPLEFH  188 (259)
T ss_pred             EEEeCCCCCCC--CHHHHHHHHHHHHHhcC-CeEEEE
Confidence            98888766533  78999999999999984 887664

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=95.03  E-value=0.24  Score=39.97  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             hhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHH-HHHHHHhCCCCEEEECCCCCC
Q psy9602         123 LRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVE-LAKHAESLNVHAVLCLPELFF  201 (239)
Q Consensus       123 ~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIe-lar~A~~aGAdaVlV~PP~y~  201 (239)
                      ...++|.+++..+.......-......+++....+..   ++|+++++...+..+.+. .++.+.++|+|++.+.....+
T Consensus        20 ~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~   96 (200)
T cd04722          20 AAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET---DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGY   96 (200)
T ss_pred             HHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc---CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCc
Confidence            3456677766555433222211111113445555443   479999998777666554 378999999999999875543


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         202 TPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       202 ~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      .   .+.+.++.+.+.+..|++|+++.-.+.
T Consensus        97 ~---~~~~~~~~~~i~~~~~~~~v~~~~~~~  124 (200)
T cd04722          97 L---AREDLELIRELREAVPDVKVVVKLSPT  124 (200)
T ss_pred             H---HHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            3   366778888888876678888876553

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=94.90  E-value=0.32  Score=45.31  Aligned_cols=82  Identities=16%  Similarity=0.221  Sum_probs=57.6

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV  210 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv  210 (239)
                      +|+.+--..++.+|..+=|+.++++..+.++-|++=+   ...+.+++|+.++.+.++|||++.+.-|    . +.+++.
T Consensus       120 cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~----~-~~~ei~  194 (294)
T TIGR02319       120 CGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM----L-DVEEMK  194 (294)
T ss_pred             cCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC----C-CHHHHH
Confidence            4555544567999999999999987654123444422   3457999999999999999999998532    2 667755


Q ss_pred             HHHHHHHhhCCCCcE
Q psy9602         211 DYLRDVGEAAPATPL  225 (239)
Q Consensus       211 ~yf~~VaeatpdLPI  225 (239)
                      .    ++++. +.|+
T Consensus       195 ~----~~~~~-~~P~  204 (294)
T TIGR02319       195 R----VRDEI-DAPL  204 (294)
T ss_pred             H----HHHhc-CCCe
Confidence            5    44455 4676

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=94.79  E-value=0.68  Score=41.60  Aligned_cols=96  Identities=16%  Similarity=0.119  Sum_probs=71.0

Q ss_pred             EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602         131 QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFT  202 (239)
Q Consensus       131 lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~  202 (239)
                      +-++.+++|..     ..|.+|-.+.+..+++.++.....|.++.-   ..+.+..+++++.+.++|++.+.+.-.....
T Consensus        90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~  169 (268)
T cd07940          90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYL  169 (268)
T ss_pred             EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence            44666777764     677787666666666665542456666543   3578888999999999999999888766532


Q ss_pred             CCCHHHHHHHHHHHHhhCCC--CcEEEE
Q psy9602         203 PASVEDLVDYLRDVGEAAPA--TPLFYY  228 (239)
Q Consensus       203 ~~s~e~iv~yf~~Vaeatpd--LPIiLY  228 (239)
                        +++++.++++.+.+..|+  +||-++
T Consensus       170 --~P~~v~~lv~~l~~~~~~~~i~l~~H  195 (268)
T cd07940         170 --TPEEFGELIKKLKENVPNIKVPISVH  195 (268)
T ss_pred             --CHHHHHHHHHHHHHhCCCCceeEEEE
Confidence              789999999999999865  776554

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=94.64  E-value=0.79  Score=43.61  Aligned_cols=105  Identities=19%  Similarity=0.129  Sum_probs=79.6

Q ss_pred             HHhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCC
Q psy9602         121 ITLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAd  191 (239)
                      ++...+.+.. +-++.++++.     ...|.+|-.+.+..+++.+......|.++.   +..+.+..+++++.+.++|++
T Consensus        81 i~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~  160 (378)
T PRK11858         81 IDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGAD  160 (378)
T ss_pred             HHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCC
Confidence            4444555554 4577788885     678889988877777777664345666553   457789999999999999999


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .+.+...... . +++++.+.++.+.+.. ++||-++
T Consensus       161 ~I~l~DT~G~-~-~P~~v~~lv~~l~~~~-~~~l~~H  194 (378)
T PRK11858        161 RVRFCDTVGI-L-DPFTMYELVKELVEAV-DIPIEVH  194 (378)
T ss_pred             EEEEeccCCC-C-CHHHHHHHHHHHHHhc-CCeEEEE
Confidence            9888876643 2 7899999999999998 7887665

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=94.62  E-value=1  Score=40.89  Aligned_cols=106  Identities=9%  Similarity=0.060  Sum_probs=75.9

Q ss_pred             hHHhhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCC
Q psy9602         120 GITLRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       120 ~v~~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGA  190 (239)
                      +++...+.|.. +-++-+++|     ....|.+|-.+.+..+++.+....+.|.+++   +..+.+...++++.+.++|+
T Consensus        76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~  155 (262)
T cd07948          76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGV  155 (262)
T ss_pred             HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCC
Confidence            34555565554 445556665     3457788877777767666554246666654   44568999999999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +.+.+.......  +++++.++++.+.+.. ++||-++
T Consensus       156 ~~i~l~Dt~G~~--~P~~v~~~~~~~~~~~-~~~i~~H  190 (262)
T cd07948         156 NRVGIADTVGIA--TPRQVYELVRTLRGVV-SCDIEFH  190 (262)
T ss_pred             CEEEECCcCCCC--CHHHHHHHHHHHHHhc-CCeEEEE
Confidence            998887765532  7899999999999988 5787554

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=94.33  E-value=0.93  Score=41.13  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCC--CCEEEE--CCCCC------CCCCCHHHHHHHH
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLN--VHAVLC--LPELF------FTPASVEDLVDYL  213 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aG--AdaVlV--~PP~y------~~~~s~e~iv~yf  213 (239)
                      ..++..+.++...+..   ..|+++++.+.+.++..+.++..++++  +|++-+  .-|..      +.. +.+.+.+.+
T Consensus        74 g~~~~~~~~~~~~~~~---~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~-~~~~~~eiv  149 (300)
T TIGR01037        74 GVEAFLEELKPVREEF---PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQ-DPELSADVV  149 (300)
T ss_pred             CHHHHHHHHHHHhccC---CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCcccccc-CHHHHHHHH
Confidence            4556555555433222   469999999999999999999999874  899988  33442      112 778899999


Q ss_pred             HHHHhhCCCCcEEEEe
Q psy9602         214 RDVGEAAPATPLFYYH  229 (239)
Q Consensus       214 ~~VaeatpdLPIiLYN  229 (239)
                      +++.+++ ++||++==
T Consensus       150 ~~vr~~~-~~pv~vKi  164 (300)
T TIGR01037       150 KAVKDKT-DVPVFAKL  164 (300)
T ss_pred             HHHHHhc-CCCEEEEC
Confidence            9999988 89988643

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=94.24  E-value=0.15  Score=46.15  Aligned_cols=64  Identities=25%  Similarity=0.337  Sum_probs=51.3

Q ss_pred             cCCCceEEEecCCCCHH--------HHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         160 KTHGFTVMVQIGGTCFQ--------EVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       160 ~G~rvpVIaGVg~~St~--------eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      .+ ++|||+-+-..|..        +..++|+.+++.||+++.++. |.||.. +    +++++.+.+.+ ++||+..||
T Consensus        47 ~~-~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g-~----~~~l~~v~~~v-~iPvl~kdf  119 (260)
T PRK00278         47 AG-KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQG-S----LEYLRAARAAV-SLPVLRKDF  119 (260)
T ss_pred             cC-CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCC-C----HHHHHHHHHhc-CCCEEeeee
Confidence            34 68999988543332        458999999999999999876 778876 5    67888888888 899998776

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=94.20  E-value=1.6  Score=40.08  Aligned_cols=86  Identities=10%  Similarity=0.032  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhC---CCCEEEECC--CCC-----CCCCCHHHHHHHH
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESL---NVHAVLCLP--ELF-----FTPASVEDLVDYL  213 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~a---GAdaVlV~P--P~y-----~~~~s~e~iv~yf  213 (239)
                      ..+++.+.++......+....||++++.+. .++.++.++..++.   |+|++-+--  |+.     +.. +++.+.+..
T Consensus        72 g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~-~~~~~~~i~  149 (294)
T cd04741          72 GLDYYLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAY-DFDATLEYL  149 (294)
T ss_pred             CHHHHHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccC-CHHHHHHHH
Confidence            355666655554432211157999999998 99999999999886   699998732  442     122 678999999


Q ss_pred             HHHHhhCCCCcEEEEeCCC
Q psy9602         214 RDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       214 ~~VaeatpdLPIiLYN~P~  232 (239)
                      ++|.+++ ++||++==-|.
T Consensus       150 ~~v~~~~-~iPv~vKl~p~  167 (294)
T cd04741         150 TAVKAAY-SIPVGVKTPPY  167 (294)
T ss_pred             HHHHHhc-CCCEEEEeCCC
Confidence            9999998 89998755553

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=94.13  E-value=0.98  Score=39.50  Aligned_cols=83  Identities=24%  Similarity=0.229  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEec---CC--CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQI---GG--TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGE  218 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGV---g~--~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vae  218 (239)
                      +.++-.+.+...++.++...+++.+.+   +.  .+.++..++++.+.++|++.+.+..-.. .. +++++.++++.+.+
T Consensus       109 ~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G-~~-~P~~v~~li~~l~~  186 (265)
T cd03174         109 SREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG-LA-TPEEVAELVKALRE  186 (265)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC-Cc-CHHHHHHHHHHHHH
Confidence            444444445444444443356666544   55  8899999999999999999999776543 34 89999999999999


Q ss_pred             hCCCCcEEEE
Q psy9602         219 AAPATPLFYY  228 (239)
Q Consensus       219 atpdLPIiLY  228 (239)
                      ..|++|+-++
T Consensus       187 ~~~~~~~~~H  196 (265)
T cd03174         187 ALPDVPLGLH  196 (265)
T ss_pred             hCCCCeEEEE
Confidence            9866777754

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=93.89  E-value=1.5  Score=41.46  Aligned_cols=106  Identities=16%  Similarity=0.028  Sum_probs=76.3

Q ss_pred             HHhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCC
Q psy9602         121 ITLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAd  191 (239)
                      ++...+.+.. +-++.++++.     ...|.+|=.+.+..+++.++.....|.++.   +..+.+..+++++.+.++|++
T Consensus        78 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~  157 (365)
T TIGR02660        78 IEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGAD  157 (365)
T ss_pred             HHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcC
Confidence            3444555554 4477777763     557888877666666666654345666654   345689999999999999999


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      .+.+...... . +++++.++++.+.+.. ++||-++-
T Consensus       158 ~i~l~DT~G~-~-~P~~v~~lv~~l~~~~-~v~l~~H~  192 (365)
T TIGR02660       158 RFRFADTVGI-L-DPFSTYELVRALRQAV-DLPLEMHA  192 (365)
T ss_pred             EEEEcccCCC-C-CHHHHHHHHHHHHHhc-CCeEEEEe
Confidence            9877765543 2 7899999999999988 68877653

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=93.84  E-value=0.59  Score=40.67  Aligned_cols=101  Identities=21%  Similarity=0.230  Sum_probs=75.6

Q ss_pred             cCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         126 APIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       126 ~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      +.+.. +-++-+.+|     ....|.+|-.+.+..+++.++.....|.++.   +..+.++.+++++.+.++|+|.+.+.
T Consensus        78 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~  157 (237)
T PF00682_consen   78 EAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA  157 (237)
T ss_dssp             HTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred             hccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence            34544 447777777     3457778888888888777765456676765   55678999999999999999999888


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         197 PELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       197 PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .-....  +++++.++++.+.+..|++||-++
T Consensus       158 Dt~G~~--~P~~v~~lv~~~~~~~~~~~l~~H  187 (237)
T PF00682_consen  158 DTVGIM--TPEDVAELVRALREALPDIPLGFH  187 (237)
T ss_dssp             ETTS-S---HHHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CccCCc--CHHHHHHHHHHHHHhccCCeEEEE
Confidence            755432  789999999999999976887765

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=93.67  E-value=0.74  Score=44.39  Aligned_cols=88  Identities=13%  Similarity=0.014  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEEC--CCCCC---C-----CCCHHHHHHH
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCL--PELFF---T-----PASVEDLVDY  212 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~--PP~y~---~-----~~s~e~iv~y  212 (239)
                      ..+++.+.++.+.+...  .+|||+.+.. .+.++-.++++.+++.|||++-+-  -|+.-   .     ..+.+.+.+.
T Consensus        96 g~~~~l~~i~~~k~~~~--~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i  173 (385)
T PLN02495         96 PFETMLAEFKQLKEEYP--DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEV  173 (385)
T ss_pred             CHHHHHHHHHHHHhhCC--CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHH
Confidence            46777777666554432  5799999955 899999999999999999999863  35531   0     0156777777


Q ss_pred             HHHHHhhCCCCcEEEEeCCCCc
Q psy9602         213 LRDVGEAAPATPLFYYHIPMFT  234 (239)
Q Consensus       213 f~~VaeatpdLPIiLYN~P~~T  234 (239)
                      .+.|-+.+ ++||++==-|..+
T Consensus       174 ~~~Vk~~~-~iPv~vKLsPn~t  194 (385)
T PLN02495        174 CGWINAKA-TVPVWAKMTPNIT  194 (385)
T ss_pred             HHHHHHhh-cCceEEEeCCChh
Confidence            78888877 8999987666543

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=93.57  E-value=0.65  Score=41.92  Aligned_cols=73  Identities=16%  Similarity=0.022  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEecCC------------------CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH
Q psy9602         147 ERKLNLEAWMTEAKTHGFTVMVQIGG------------------TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVED  208 (239)
Q Consensus       147 ER~~li~~vve~~~G~rvpVIaGVg~------------------~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~  208 (239)
                      |..+.++.+++.    .++||+.++.                  .+.+++|+.++..+++|||++++--+      +.++
T Consensus       113 ~~~~~i~ai~~a----~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------~~e~  182 (240)
T cd06556         113 WHIETLQMLTAA----AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------PVEL  182 (240)
T ss_pred             HHHHHHHHHHHc----CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------CHHH
Confidence            555566666553    5899998776                  35789999999999999999999632      2344


Q ss_pred             HHHHHHHHHhhCCCCcEEEEeCCCCc
Q psy9602         209 LVDYLRDVGEAAPATPLFYYHIPMFT  234 (239)
Q Consensus       209 iv~yf~~VaeatpdLPIiLYN~P~~T  234 (239)
                      +.    .|.++. ++|++..=.|..|
T Consensus       183 ~~----~i~~~~-~~P~~~~gag~~~  203 (240)
T cd06556         183 AK----QITEAL-AIPLAGIGAGSGT  203 (240)
T ss_pred             HH----HHHHhC-CCCEEEEecCcCC
Confidence            33    456667 7998876555433

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=93.53  E-value=1.6  Score=39.65  Aligned_cols=85  Identities=19%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC-----------------
Q psy9602         138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF-----------------  200 (239)
Q Consensus       138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y-----------------  200 (239)
                      |+....+.+.-.++++.+.+.+   ++||++=++. +.++.+++++.++++|+|++.+..-..                 
T Consensus       135 g~~~~~~~~~~~eiv~~vr~~~---~~pv~vKl~~-~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~  210 (301)
T PRK07259        135 GMAFGTDPELAYEVVKAVKEVV---KVPVIVKLTP-NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVT  210 (301)
T ss_pred             ccccccCHHHHHHHHHHHHHhc---CCCEEEEcCC-CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCc
Confidence            5666667788888888888876   4799998774 456899999999999999998732100                 


Q ss_pred             --CC-CCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         201 --FT-PASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       201 --~~-~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                        +. +.-..-.+++...+.+++ ++||+.
T Consensus       211 gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~  239 (301)
T PRK07259        211 GGLSGPAIKPIALRMVYQVYQAV-DIPIIG  239 (301)
T ss_pred             CccCCcCcccccHHHHHHHHHhC-CCCEEE
Confidence              00 000112467778888888 899763

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=93.50  E-value=0.98  Score=41.90  Aligned_cols=81  Identities=16%  Similarity=0.236  Sum_probs=56.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEec----CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI----GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDV  216 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV----g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~V  216 (239)
                      ...+.+|..+-|+.++++..+.++-|++=+    ...+.+++|+.++.+.++|||++.+..|.   . +.+++...-+.+
T Consensus       127 ~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~---~-~~~ei~~~~~~~  202 (290)
T TIGR02321       127 ELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ---K-TPDEILAFVKSW  202 (290)
T ss_pred             cccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC---C-CHHHHHHHHHhc
Confidence            346999999999999987544223344422    23467999999999999999999995322   2 678877776655


Q ss_pred             HhhCCCCcEEEE
Q psy9602         217 GEAAPATPLFYY  228 (239)
Q Consensus       217 aeatpdLPIiLY  228 (239)
                      .  . .+|+++-
T Consensus       203 ~--~-p~pv~~~  211 (290)
T TIGR02321       203 P--G-KVPLVLV  211 (290)
T ss_pred             C--C-CCCeEEe
Confidence            2  2 3688653

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.43  E-value=1.2  Score=40.73  Aligned_cols=83  Identities=18%  Similarity=0.091  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEE---CCCCC--------CCCCCHHHHHHH
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLC---LPELF--------FTPASVEDLVDY  212 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV---~PP~y--------~~~~s~e~iv~y  212 (239)
                      .+++.+.++.+.+...  ..|+|+.+.+. +.++-++.++.+++.|+|++-+   .|...        +.. +++.+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~--~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~-~~~~~~~i  159 (299)
T cd02940          83 LEYWLKEIRELKKDFP--DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQ-DPELVEEI  159 (299)
T ss_pred             HHHHHHHHHHHHhhCC--CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhcc-CHHHHHHH
Confidence            4555555554444332  36999999887 9999999999999999999988   33220        112 67889999


Q ss_pred             HHHHHhhCCCCcEEEEeCC
Q psy9602         213 LRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       213 f~~VaeatpdLPIiLYN~P  231 (239)
                      .+.+.+.+ ++||++==-|
T Consensus       160 v~~v~~~~-~~Pv~vKl~~  177 (299)
T cd02940         160 CRWVREAV-KIPVIAKLTP  177 (299)
T ss_pred             HHHHHHhc-CCCeEEECCC
Confidence            99998888 8999875444

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III

Probab=93.35  E-value=1.2  Score=43.42  Aligned_cols=114  Identities=11%  Similarity=-0.041  Sum_probs=72.2

Q ss_pred             HHHHHHhhHHhhhcCCCCEEEecc-ccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602         113 LTCMLLVGITLRMAPIIDQMVNGT-TGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAES  187 (239)
Q Consensus       113 ~~~~l~~~v~~~~~gg~glvV~Gs-tGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~  187 (239)
                      +-+.++.-+.....||.+++=-=. ...-.+...+||...+..+++.    ++. +.-..+++++.++++.++.++.+++
T Consensus       146 sp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~y~~NiT~~~~~em~~ra~~~~~  224 (414)
T cd08206         146 SPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGE-AKGHYLNITADTPEEMIKRAEFAKE  224 (414)
T ss_pred             CHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCC-cceEEeccCCCcHHHHHHHHHHHHH
Confidence            333444434444556655542211 3455777889998877766554    444 4556668998889999999999999


Q ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Q psy9602         188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTR  235 (239)
Q Consensus       188 aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG  235 (239)
                      +|+.++|+-+-.+- .       .-+..+++..|+..+.|+-.|...|
T Consensus       225 ~G~~~~mv~~~~~G-~-------~~l~~l~~~~~~~~l~ih~HrA~~g  264 (414)
T cd08206         225 LGSVIVMVDGVTAG-W-------TAIQSARRWCPDNGLALHAHRAGHA  264 (414)
T ss_pred             hCCcEEEEeeeccc-H-------HHHHHHHHhccccCeEEEEccccce
Confidence            99999999864331 1       1255566554444455555555444

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=93.29  E-value=2.2  Score=38.81  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         171 GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       171 g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +..+.+..+++++.+.++|+|.+.+.-.....  +++++.+.++.+.+.. ++||-++
T Consensus       144 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~--~P~~v~~lv~~l~~~~-~~~l~~H  198 (275)
T cd07937         144 PVHTLEYYVKLAKELEDMGADSICIKDMAGLL--TPYAAYELVKALKKEV-GLPIHLH  198 (275)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC--CHHHHHHHHHHHHHhC-CCeEEEE
Confidence            45678999999999999999999998876543  7899999999999998 5787754

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed

Probab=93.27  E-value=1.9  Score=42.73  Aligned_cols=114  Identities=11%  Similarity=-0.049  Sum_probs=71.1

Q ss_pred             hhhHHHHHHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHH
Q psy9602         108 AGLLLLTCMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELA  182 (239)
Q Consensus       108 A~~~~~~~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIela  182 (239)
                      |....+-+.++.-+.....||.+++=-= ..+.-.+...+||...+..+++.    ++. +.-..+++++.++++.++.+
T Consensus       169 P~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~-~k~y~~NiT~~~~~em~~ra  247 (468)
T PRK04208        169 PKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGE-RKGHYLNVTAPTMEEMYKRA  247 (468)
T ss_pred             cccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCC-cceEEEecCCCCHHHHHHHH
Confidence            3333344444444444556666665221 23445577889998876666554    433 45567799998899999999


Q ss_pred             HHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         183 KHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       183 r~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +.+.+.|++++|+.+-.+ ..   . .+...+..+... ++||..+
T Consensus       248 ~~~~e~G~~~~mv~~~~~-G~---~-~l~~l~~~~~~~-~l~IhaH  287 (468)
T PRK04208        248 EFAKELGSPIVMIDVVTA-GW---T-ALQSLREWCRDN-GLALHAH  287 (468)
T ss_pred             HHHHHhCCCEEEEecccc-cc---H-HHHHHHHhhhcC-CcEEEec
Confidence            999999999999986443 22   1 234444443344 5666543

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=93.09  E-value=0.4  Score=40.91  Aligned_cols=61  Identities=20%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             CceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +.-+.. +-...+.+..++.++.+.+.|+|++++.|+..      +.+...++.+.++  ++||+.+|.+
T Consensus        28 g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~------~~~~~~l~~~~~~--gIpvv~~d~~   89 (257)
T PF13407_consen   28 GYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP------DSLAPFLEKAKAA--GIPVVTVDSD   89 (257)
T ss_dssp             TCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSST------TTTHHHHHHHHHT--TSEEEEESST
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH------HHHHHHHHHHhhc--CceEEEEecc
Confidence            345555 78889999999999999999999999997543      3345667777665  7999999988

...

>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III

Probab=93.02  E-value=1.7  Score=42.30  Aligned_cols=86  Identities=13%  Similarity=-0.067  Sum_probs=60.0

Q ss_pred             HHHHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602         113 LTCMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAES  187 (239)
Q Consensus       113 ~~~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~  187 (239)
                      +-+.++.-+.....||.+++=-= ....-.+...+||...+..+++    .++. +.-..+++++. +++.++.++.+++
T Consensus       158 sp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~ya~NiT~~-~~em~~ra~~~~~  235 (412)
T TIGR03326       158 STEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGE-RKEYLANITAP-VREMERRAELVAD  235 (412)
T ss_pred             ChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCC-cceEEEEecCC-HHHHHHHHHHHHH
Confidence            44444444444556666665221 2445667788999988777764    4444 55567799876 8999999999999


Q ss_pred             CCCCEEEECCCCC
Q psy9602         188 LNVHAVLCLPELF  200 (239)
Q Consensus       188 aGAdaVlV~PP~y  200 (239)
                      .|++++|+.+-.+
T Consensus       236 ~G~~~~mv~~~~~  248 (412)
T TIGR03326       236 LGGQYVMVDVVVC  248 (412)
T ss_pred             hCCCeEEEEeecc
Confidence            9999999986443

Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=92.97  E-value=0.89  Score=39.66  Aligned_cols=83  Identities=12%  Similarity=0.099  Sum_probs=59.3

Q ss_pred             HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602         121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPE  198 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP  198 (239)
                      +....+.|.+++-...++         -.+.++.+++.+   ++||++  |++..+.+++++.++.+.++||+++++...
T Consensus       149 ~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~  216 (235)
T cd00958         149 ARIGAELGADIVKTKYTG---------DAESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRN  216 (235)
T ss_pred             HHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechh
Confidence            344556677665332222         134466666654   467766  456678999999999999999999999998


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy9602         199 LFFTPASVEDLVDYLRDV  216 (239)
Q Consensus       199 ~y~~~~s~e~iv~yf~~V  216 (239)
                      .+..+ ++.+..+-++.+
T Consensus       217 i~~~~-dp~~~~~~~~~~  233 (235)
T cd00958         217 IFQRP-DPVAMLRAISAV  233 (235)
T ss_pred             hhcCC-CHHHHHHHHHHH
Confidence            88777 888888877765

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=92.95  E-value=2.5  Score=37.89  Aligned_cols=81  Identities=14%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCC-------------------CCC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCLPELF-------------------FTP  203 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~PP~y-------------------~~~  203 (239)
                      ..+.-.++++.+.+.+   ++||++.++. .+.++..++++.++++|+|++.+..-.+                   +..
T Consensus       146 ~~~~~~eiv~~vr~~~---~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg  222 (289)
T cd02810         146 DPEAVANLLKAVKAAV---DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG  222 (289)
T ss_pred             CHHHHHHHHHHHHHcc---CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCc
Confidence            4555667888888766   4799998874 4566899999999999999999863110                   000


Q ss_pred             -CCHHHHHHHHHHHHhhCC-CCcEEE
Q psy9602         204 -ASVEDLVDYLRDVGEAAP-ATPLFY  227 (239)
Q Consensus       204 -~s~e~iv~yf~~Vaeatp-dLPIiL  227 (239)
                       ....--.++.+.+.+..| ++||+.
T Consensus       223 ~~~~~~~~~~v~~i~~~~~~~ipiia  248 (289)
T cd02810         223 APIRPLALRWVARLAARLQLDIPIIG  248 (289)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence             001224778888888875 688764

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=92.89  E-value=2.4  Score=38.34  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=57.8

Q ss_pred             cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC------------------
Q psy9602         138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL------------------  199 (239)
Q Consensus       138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~------------------  199 (239)
                      |..+.-+.+.-.++++.+.+.+   ++||++-++. +.++..++++.++++|+|++.+..-.                  
T Consensus       132 g~~~~~~~~~~~eiv~~vr~~~---~~Pv~vKl~~-~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~  207 (296)
T cd04740         132 GMAFGTDPEAVAEIVKAVKKAT---DVPVIVKLTP-NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVT  207 (296)
T ss_pred             cccccCCHHHHHHHHHHHHhcc---CCCEEEEeCC-CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCc
Confidence            4445556666678888888776   4799998864 45589999999999999999874210                  


Q ss_pred             -CCC-CCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         200 -FFT-PASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       200 -y~~-~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                       .+. +....--.++.+.+.+.+ ++||+.
T Consensus       208 gg~sg~~~~~~~~~~i~~i~~~~-~ipii~  236 (296)
T cd04740         208 GGLSGPAIKPIALRMVYQVYKAV-EIPIIG  236 (296)
T ss_pred             ceecCcccchHHHHHHHHHHHhc-CCCEEE
Confidence             000 001112457778888888 799874

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=92.59  E-value=0.64  Score=44.17  Aligned_cols=73  Identities=14%  Similarity=0.067  Sum_probs=51.6

Q ss_pred             hcCCCC-EEEecc--ccCC--cCCCHHHHHHHHHHHHHHhcCCCceEEEecC--CCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602         125 MAPIID-QMVNGT--TGEG--VSMTTAERKLNLEAWMTEAKTHGFTVMVQIG--GTCFQEVVELAKHAESLNVHAVLCLP  197 (239)
Q Consensus       125 ~~gg~g-lvV~Gs--tGE~--~sLT~eER~~li~~vve~~~G~rvpVIaGVg--~~St~eAIelar~A~~aGAdaVlV~P  197 (239)
                      ++.|.+ +++++.  ++-.  ..+|.+|..+.++.+-+..+  ++-|.+.+.  ....+...+..+.+.+.|+|+|.+..
T Consensus        23 i~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk--k~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D  100 (347)
T COG0826          23 IAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK--KVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD  100 (347)
T ss_pred             HHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC--eEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence            455555 445433  3333  45999999999999887643  456666553  33455568899999999999999997


Q ss_pred             CC
Q psy9602         198 EL  199 (239)
Q Consensus       198 P~  199 (239)
                      |.
T Consensus       101 pg  102 (347)
T COG0826         101 PG  102 (347)
T ss_pred             HH
Confidence            76

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=92.58  E-value=1  Score=42.23  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHHHhcC---CCceEEEecCC-------CCHHHHHHHHHHHHhCC-CCEEEECCCCCCC---------C
Q psy9602         144 TTAERKLNLEAWMTEAKT---HGFTVMVQIGG-------TCFQEVVELAKHAESLN-VHAVLCLPELFFT---------P  203 (239)
Q Consensus       144 T~eER~~li~~vve~~~G---~rvpVIaGVg~-------~St~eAIelar~A~~aG-AdaVlV~PP~y~~---------~  203 (239)
                      |.+.|.+++..+++.+..   .+++|.+=++.       .+.++++++++..+++| +|.+-|.-..+..         +
T Consensus       186 slenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~  265 (343)
T cd04734         186 SLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPS  265 (343)
T ss_pred             CHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCC
Confidence            467776665555554433   04455543332       46899999999999998 8999885322111         0


Q ss_pred             C--CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         204 A--SVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       204 ~--s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .  ...-...+.+.+.+.+ ++||+.
T Consensus       266 ~~~~~~~~~~~~~~ik~~~-~ipvi~  290 (343)
T cd04734         266 MGMPPGPFLPLAARIKQAV-DLPVFH  290 (343)
T ss_pred             CCCCcchhHHHHHHHHHHc-CCCEEe
Confidence            0  1122355667777777 789775

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional

Probab=92.58  E-value=2.9  Score=41.71  Aligned_cols=102  Identities=15%  Similarity=0.062  Sum_probs=75.2

Q ss_pred             hcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC------CCCHHHHHHHHHHHHhCCCCE
Q psy9602         125 MAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG------GTCFQEVVELAKHAESLNVHA  192 (239)
Q Consensus       125 ~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg------~~St~eAIelar~A~~aGAda  192 (239)
                      .+.+.. +-++.++++     ....|.+|-.+.+..+++.++.....|.++.-      ..+.+..+++++.+.++||+.
T Consensus        95 ~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~  174 (524)
T PRK12344         95 LDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADW  174 (524)
T ss_pred             HhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCe
Confidence            444544 336556664     45688899999888888887764456655433      345778899999999999999


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       193 VlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      +.+..-..+.  +++++.++++.+.+.. ++||-++-
T Consensus       175 i~l~DTvG~~--~P~~v~~li~~l~~~~-~v~i~~H~  208 (524)
T PRK12344        175 VVLCDTNGGT--LPHEVAEIVAEVRAAP-GVPLGIHA  208 (524)
T ss_pred             EEEccCCCCc--CHHHHHHHHHHHHHhc-CCeEEEEE
Confidence            8876654432  7899999999999998 78887653

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=92.45  E-value=1.3  Score=41.13  Aligned_cols=82  Identities=18%  Similarity=0.292  Sum_probs=54.7

Q ss_pred             CHHHHHHH----HHHHHHHhcCCCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--------
Q psy9602         144 TTAERKLN----LEAWMTEAKTHGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--------  204 (239)
Q Consensus       144 T~eER~~l----i~~vve~~~G~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--------  204 (239)
                      |.+.|.++    ++.+.+.++. ++||.+=++       +.+.++++++++..+++|+|.+-|..-.+..+.        
T Consensus       194 slenR~rf~~EiI~aIR~avG~-d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~  272 (338)
T cd04733         194 SLENRARLLLEIYDAIRAAVGP-GFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKES  272 (338)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCC-CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCC
Confidence            56777664    4555555544 577777553       468899999999999999999987542221110        


Q ss_pred             --C-HHHHHHHHHHHHhhCCCCcEEE
Q psy9602         205 --S-VEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       205 --s-~e~iv~yf~~VaeatpdLPIiL  227 (239)
                        . +.-..++.+.|.+++ ++||+.
T Consensus       273 ~~~~~~~~~~~~~~ik~~v-~iPVi~  297 (338)
T cd04733         273 TIAREAYFLEFAEKIRKVT-KTPLMV  297 (338)
T ss_pred             ccccchhhHHHHHHHHHHc-CCCEEE
Confidence              0 111256677888888 899876

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=92.41  E-value=2.6  Score=39.86  Aligned_cols=105  Identities=14%  Similarity=0.061  Sum_probs=74.5

Q ss_pred             HHhhhcCCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCC
Q psy9602         121 ITLRMAPIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAd  191 (239)
                      ++...+.+.. +-++-++++..     ..|.+|-.+.+..+++.++.....|.++.   +..+.+..++.++.+.++|++
T Consensus        77 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~  156 (363)
T TIGR02090        77 IDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGAD  156 (363)
T ss_pred             HHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCC
Confidence            3444555554 44666666653     46777777766666666554345565554   456789999999999999999


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .+.+...... . +++++.+.++.+.+.. ++||-++
T Consensus       157 ~i~l~DT~G~-~-~P~~v~~li~~l~~~~-~~~l~~H  190 (363)
T TIGR02090       157 RINIADTVGV-L-TPQKMEELIKKLKENV-KLPISVH  190 (363)
T ss_pred             EEEEeCCCCc-c-CHHHHHHHHHHHhccc-CceEEEE
Confidence            9888876543 2 7899999999999988 5776554

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=92.39  E-value=2.5  Score=39.79  Aligned_cols=98  Identities=16%  Similarity=0.092  Sum_probs=65.1

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE---ecCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV---QIGGTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa---GVg~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      ++...+.+.+.+ +.-+..|.     +.-.+.++.+.+.    ...|.+   -.+..+.+..+++++.+.+.|++.+.+.
T Consensus        94 l~~a~~~gvd~iri~~~~~e~-----~~~~~~i~~ak~~----G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~  164 (337)
T PRK08195         94 LKMAYDAGVRVVRVATHCTEA-----DVSEQHIGLAREL----GMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV  164 (337)
T ss_pred             HHHHHHcCCCEEEEEEecchH-----HHHHHHHHHHHHC----CCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence            344455566543 54444442     2233344444332    234433   3355678999999999999999999888


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhC-CCCcEEEEe
Q psy9602         197 PELFFTPASVEDLVDYLRDVGEAA-PATPLFYYH  229 (239)
Q Consensus       197 PP~y~~~~s~e~iv~yf~~Vaeat-pdLPIiLYN  229 (239)
                      -.....  .++++.++++.+-+.. |++||-++-
T Consensus       165 DT~G~~--~P~~v~~~v~~l~~~l~~~i~ig~H~  196 (337)
T PRK08195        165 DSAGAL--LPEDVRDRVRALRAALKPDTQVGFHG  196 (337)
T ss_pred             CCCCCC--CHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence            876533  7899999999999987 578887753

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=92.31  E-value=2.1  Score=37.32  Aligned_cols=94  Identities=16%  Similarity=0.106  Sum_probs=61.4

Q ss_pred             HHhhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC--------CCHHHHHHH-HHHHHhCCC
Q psy9602         121 ITLRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG--------TCFQEVVEL-AKHAESLNV  190 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~--------~St~eAIel-ar~A~~aGA  190 (239)
                      ++..++.|.. +.+.-..|   .++.+|..+.++.+++.+.+..+|+|+-+..        .+. +.++. ++.|.++||
T Consensus        82 v~~a~~~Ga~~v~~~~~~~---~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~-~~i~~~~~~a~~~Ga  157 (235)
T cd00958          82 VEDAVRLGADAVGVTVYVG---SEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDP-DLIAYAARIGAELGA  157 (235)
T ss_pred             HHHHHHCCCCEEEEEEecC---CchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCH-HHHHHHHHHHHHHCC
Confidence            4444565553 42222233   3346788888888888766557999986533        233 45554 899999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      |.+-+.+|    . +    .+.++.+.+.+ .+||++-
T Consensus       158 D~Ik~~~~----~-~----~~~~~~i~~~~-~~pvv~~  185 (235)
T cd00958         158 DIVKTKYT----G-D----AESFKEVVEGC-PVPVVIA  185 (235)
T ss_pred             CEEEecCC----C-C----HHHHHHHHhcC-CCCEEEe
Confidence            99988422    1 2    45688888888 6998653

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein

Probab=92.17  E-value=2.2  Score=42.62  Aligned_cols=99  Identities=10%  Similarity=-0.002  Sum_probs=73.3

Q ss_pred             hhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC------CCCHHHHHHHHHHHHhCCC
Q psy9602         123 LRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG------GTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       123 ~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg------~~St~eAIelar~A~~aGA  190 (239)
                      ...+.+.. +-++.++++     ....|.+|-.+.+..+++.++.....|..+..      ..+.+.+++.++.+.++|+
T Consensus        89 a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGa  168 (526)
T TIGR00977        89 ALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGA  168 (526)
T ss_pred             HHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCC
Confidence            33455554 446677765     45678999999988888877653345544332      4678999999999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP  224 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP  224 (239)
                      +.+.+.....+.  ++.++.+.++.+.+.+| .+
T Consensus       169 d~i~i~DTvG~~--~P~~v~~li~~l~~~~~-~~  199 (526)
T TIGR00977       169 DWLVLCDTNGGT--LPHEISEITTKVKRSLK-QP  199 (526)
T ss_pred             CeEEEecCCCCc--CHHHHHHHHHHHHHhCC-CC
Confidence            999888655433  78999999999999984 44

This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=92.02  E-value=1.5  Score=39.79  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC--------C-------
Q psy9602         138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF--------T-------  202 (239)
Q Consensus       138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~--------~-------  202 (239)
                      |..+.-+.+.-.++++.+.+.+   ++||++=+. .+.++.+++++.++++|+|++.+..-.+-        .       
T Consensus       135 g~~l~~~~~~~~eiv~~vr~~~---~~pv~vKi~-~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~  210 (300)
T TIGR01037       135 GIAIGQDPELSADVVKAVKDKT---DVPVFAKLS-PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKT  210 (300)
T ss_pred             ccccccCHHHHHHHHHHHHHhc---CCCEEEECC-CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCC
Confidence            5556667788888888888876   479998776 36678999999999999999998531110        0       


Q ss_pred             -CCCHHH----HHHHHHHHHhhCCCCcEEE
Q psy9602         203 -PASVED----LVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       203 -~~s~e~----iv~yf~~VaeatpdLPIiL  227 (239)
                       ..+-..    -+++...+.+++ ++||+.
T Consensus       211 gg~sg~~~~~~~l~~v~~i~~~~-~ipvi~  239 (300)
T TIGR01037       211 GGLSGPAIKPIALRMVYDVYKMV-DIPIIG  239 (300)
T ss_pred             ccccchhhhHHHHHHHHHHHhcC-CCCEEE
Confidence             001111    247778888888 799874

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=91.95  E-value=0.96  Score=38.59  Aligned_cols=61  Identities=13%  Similarity=0.123  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ++++.....    +.++|+|+.  +    .+.+..|.+.|||.+.+.|   .   +.. ..+|++.+....|++|++.
T Consensus        88 ~~~~~~~~~----~~~~i~gv~--t----~~e~~~A~~~Gad~i~~~p---~---~~~-g~~~~~~l~~~~~~~p~~a  148 (190)
T cd00452          88 EVVKAANRA----GIPLLPGVA--T----PTEIMQALELGADIVKLFP---A---EAV-GPAYIKALKGPFPQVRFMP  148 (190)
T ss_pred             HHHHHHHHc----CCcEECCcC--C----HHHHHHHHHCCCCEEEEcC---C---ccc-CHHHHHHHHhhCCCCeEEE
Confidence            355544432    579999888  3    3556777889999999854   1   222 5678888887776678764

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK00915 2-isopropylmalate synthase; Validated

Probab=91.89  E-value=3.5  Score=40.92  Aligned_cols=96  Identities=11%  Similarity=-0.007  Sum_probs=74.9

Q ss_pred             EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602         131 QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFT  202 (239)
Q Consensus       131 lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~  202 (239)
                      +.++.++++.+     ..|.+|-.+.+..+++.++.....|.++.   +..+.+.++++++.+.++||+.+.+.....+.
T Consensus        96 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~  175 (513)
T PRK00915         96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYT  175 (513)
T ss_pred             EEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCC
Confidence            55777887765     77889988888888777765445666665   34668889999999999999998887766543


Q ss_pred             CCCHHHHHHHHHHHHhhCCC---CcEEEE
Q psy9602         203 PASVEDLVDYLRDVGEAAPA---TPLFYY  228 (239)
Q Consensus       203 ~~s~e~iv~yf~~Vaeatpd---LPIiLY  228 (239)
                        +++++.++++.+.+..|+   +||-++
T Consensus       176 --~P~~~~~~i~~l~~~~~~~~~v~l~~H  202 (513)
T PRK00915        176 --TPEEFGELIKTLRERVPNIDKAIISVH  202 (513)
T ss_pred             --CHHHHHHHHHHHHHhCCCcccceEEEE
Confidence              789999999999998854   777664

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=91.86  E-value=0.75  Score=43.18  Aligned_cols=81  Identities=14%  Similarity=0.056  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCc---eEEEecC----------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH
Q psy9602         145 TAERKLNLEAWMTEAKTHGF---TVMVQIG----------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD  211 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rv---pVIaGVg----------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~  211 (239)
                      .+.|.+++..+++.+.. .+   +|.+=++          +.+.++.+++++..++.|+|.+-|....+... ...-...
T Consensus       198 lenR~rf~~eii~air~-~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~  275 (338)
T cd02933         198 IENRARFLLEVVDAVAE-AIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPD  275 (338)
T ss_pred             HHHhhhHHHHHHHHHHH-HhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchH
Confidence            45677666666665543 22   4544332          34779999999999999999999966544332 2234556


Q ss_pred             HHHHHHhhCCCCcEEEE
Q psy9602         212 YLRDVGEAAPATPLFYY  228 (239)
Q Consensus       212 yf~~VaeatpdLPIiLY  228 (239)
                      +.+.|.+.+ ++||+.-
T Consensus       276 ~~~~ik~~~-~ipvi~~  291 (338)
T cd02933         276 FLDFLRKAF-KGPLIAA  291 (338)
T ss_pred             HHHHHHHHc-CCCEEEE
Confidence            677777878 7998863

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain

Probab=91.83  E-value=1.8  Score=41.54  Aligned_cols=85  Identities=13%  Similarity=0.012  Sum_probs=55.7

Q ss_pred             HHHHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602         113 LTCMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAES  187 (239)
Q Consensus       113 ~~~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~  187 (239)
                      +-+.++.-+.....+|.+++=-= ....-.+...+||...+..+++    .++. +.-..+++++.. ++.++.++.+++
T Consensus       141 sp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~y~~NiT~~~-~em~~ra~~~~~  218 (366)
T cd08148         141 NPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGE-KKLYAVNVTAGT-FEIIERAERALE  218 (366)
T ss_pred             CHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCC-cceEEEEccCCH-HHHHHHHHHHHH
Confidence            33444444444455665554211 2345567788999655555444    4544 455667888654 999999999999


Q ss_pred             CCCCEEEECCCC
Q psy9602         188 LNVHAVLCLPEL  199 (239)
Q Consensus       188 aGAdaVlV~PP~  199 (239)
                      .|++++|+.+-.
T Consensus       219 ~G~~~~mv~~~~  230 (366)
T cd08148         219 LGANMLMVDVLT  230 (366)
T ss_pred             hCCCEEEEeccc
Confidence            999999998644

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=91.78  E-value=3.4  Score=37.01  Aligned_cols=97  Identities=20%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe---cCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ---IGGTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG---Vg~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      ++...+.+.+.+ +.-+.+|.     ++-.+.++.+.+.    ...|.++   ++..+.+..+++++.+.++|+|.+.+.
T Consensus        91 i~~a~~~g~~~iri~~~~s~~-----~~~~~~i~~ak~~----G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~  161 (263)
T cd07943          91 LKMAADLGVDVVRVATHCTEA-----DVSEQHIGAARKL----GMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT  161 (263)
T ss_pred             HHHHHHcCCCEEEEEechhhH-----HHHHHHHHHHHHC----CCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence            444455555543 54455543     2333344444432    3445444   466789999999999999999998776


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         197 PELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       197 PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      -... .. +++++.++++.+.+..|..||-++
T Consensus       162 DT~G-~~-~P~~v~~lv~~l~~~~~~~~l~~H  191 (263)
T cd07943         162 DSAG-AM-LPDDVRERVRALREALDPTPVGFH  191 (263)
T ss_pred             CCCC-Cc-CHHHHHHHHHHHHHhCCCceEEEE
Confidence            6554 33 789999999999999843377664

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=91.72  E-value=1.2  Score=41.60  Aligned_cols=86  Identities=9%  Similarity=0.078  Sum_probs=59.5

Q ss_pred             cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe--cCCCCHHHHHHHHHHHHhCCCCEEEECCCCC---CCCCCHHHHHHH
Q psy9602         138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ--IGGTCFQEVVELAKHAESLNVHAVLCLPELF---FTPASVEDLVDY  212 (239)
Q Consensus       138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaG--Vg~~St~eAIelar~A~~aGAdaVlV~PP~y---~~~~s~e~iv~y  212 (239)
                      |.+..-..+--.++++.+.+.++. ++||.+=  ++..+.++.+++++.++++|+|.+.|.+=..   |.. . ..=.++
T Consensus       109 Gs~Ll~~~~~~~eiv~avr~~~~~-~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g-~-~~~~~~  185 (312)
T PRK10550        109 GATLLKDPELIYQGAKAMREAVPA-HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRA-E-HINWQA  185 (312)
T ss_pred             chHhhcCHHHHHHHHHHHHHhcCC-CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCC-C-cccHHH
Confidence            444445566667777888877754 5788874  4555667799999999999999999986331   111 1 101367


Q ss_pred             HHHHHhhCCCCcEEE
Q psy9602         213 LRDVGEAAPATPLFY  227 (239)
Q Consensus       213 f~~VaeatpdLPIiL  227 (239)
                      ++.|.+++ ++||+.
T Consensus       186 i~~ik~~~-~iPVi~  199 (312)
T PRK10550        186 IGEIRQRL-TIPVIA  199 (312)
T ss_pred             HHHHHhhc-CCcEEE
Confidence            88888888 899753

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=91.70  E-value=5.5  Score=36.09  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEe---cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQ---IGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP  221 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaG---Vg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp  221 (239)
                      .++-.+.++.+.+.    ...|.++   ++..+.+..+++++.+.++|++.+.+.-.....  +++++.++++.+.+..+
T Consensus       108 ~~~~~~~i~~ak~~----G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~--~P~~v~~lv~~l~~~~~  181 (266)
T cd07944         108 FDEALPLIKAIKEK----GYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSM--YPEDIKRIISLLRSNLD  181 (266)
T ss_pred             HHHHHHHHHHHHHC----CCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCC--CHHHHHHHHHHHHHhcC
Confidence            34444444444433    3566665   455789999999999999999999998876533  78999999999999884


Q ss_pred             C-CcEEEE
Q psy9602         222 A-TPLFYY  228 (239)
Q Consensus       222 d-LPIiLY  228 (239)
                      + +||-++
T Consensus       182 ~~~~i~~H  189 (266)
T cd07944         182 KDIKLGFH  189 (266)
T ss_pred             CCceEEEE
Confidence            2 887764

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=91.68  E-value=2.6  Score=40.35  Aligned_cols=86  Identities=13%  Similarity=-0.007  Sum_probs=64.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECC--CC-C--------CCCCCHHHHH
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLP--EL-F--------FTPASVEDLV  210 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~P--P~-y--------~~~~s~e~iv  210 (239)
                      ...+++.+.++.+.+...  +.|||+++.+. +.++..+.++.+++.|+|++-+--  |. .        +.. +++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~--~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~-~~~~~~  157 (420)
T PRK08318         81 RPLEVNLREIRRVKRDYP--DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQ-VPELVE  157 (420)
T ss_pred             cCHHHHHHHHHHHHhhCC--CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccC-CHHHHH
Confidence            345666666666554442  47999999888 889999999999999999998732  33 1        112 678899


Q ss_pred             HHHHHHHhhCCCCcEEEEeCCC
Q psy9602         211 DYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +..+++.+.+ ++||++==-|.
T Consensus       158 ~i~~~v~~~~-~~Pv~vKl~p~  178 (420)
T PRK08318        158 MYTRWVKRGS-RLPVIVKLTPN  178 (420)
T ss_pred             HHHHHHHhcc-CCcEEEEcCCC
Confidence            9999999888 89998755553

>PRK15063 isocitrate lyase; Provisional

Probab=91.65  E-value=1.9  Score=42.34  Aligned_cols=94  Identities=18%  Similarity=0.279  Sum_probs=65.8

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhcCCCceE--EEecCC-------------------------------CCHHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV--MVQIGG-------------------------------TCFQEVVE  180 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpV--IaGVg~-------------------------------~St~eAIe  180 (239)
                      +|+.+=--..+.+|..+=|++++.+.+..++|.  |+=+-+                               .+++++|+
T Consensus       190 CGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~  269 (428)
T PRK15063        190 CGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIA  269 (428)
T ss_pred             cCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHH
Confidence            577765557899999999888887654212343  333323                               46899999


Q ss_pred             HHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC-CCC
Q psy9602         181 LAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI-PMF  233 (239)
Q Consensus       181 lar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~-P~~  233 (239)
                      .++.+.+ |||.+.+-...   + +.+++..+-+.|....| ..++.||. |.+
T Consensus       270 Ra~AYa~-GAD~iw~Et~~---~-d~ee~~~fa~~v~~~~P-~~~layn~sPsf  317 (428)
T PRK15063        270 RGLAYAP-YADLIWCETST---P-DLEEARRFAEAIHAKFP-GKLLAYNCSPSF  317 (428)
T ss_pred             HHHHHhc-CCCEEEeCCCC---C-CHHHHHHHHHhhcccCc-cceeecCCCCCc
Confidence            9999999 99999886422   4 77888888888765443 23788886 543

>PRK09389 (R)-citramalate synthase; Provisional

Probab=91.26  E-value=4.3  Score=40.21  Aligned_cols=104  Identities=14%  Similarity=0.061  Sum_probs=76.2

Q ss_pred             HhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCE
Q psy9602         122 TLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHA  192 (239)
Q Consensus       122 ~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAda  192 (239)
                      +..++.+.. +-++..+++.     ...|.+|-.+.+..+++.++.....|.++.   +..+.+.+++.++.+.++|++.
T Consensus        80 ~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~  159 (488)
T PRK09389         80 DAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADR  159 (488)
T ss_pred             HHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCE
Confidence            334455554 4577788877     468889988888888877665334555543   3456788899999999999999


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       193 VlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +.+.......  ++.++.+.++.|.+.. ++||-++
T Consensus       160 i~l~DTvG~~--~P~~~~~lv~~l~~~~-~v~l~~H  192 (488)
T PRK09389        160 ICFCDTVGIL--TPEKTYELFKRLSELV-KGPVSIH  192 (488)
T ss_pred             EEEecCCCCc--CHHHHHHHHHHHHhhc-CCeEEEE
Confidence            8776655432  7899999999999887 6887764

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=91.13  E-value=2  Score=40.26  Aligned_cols=82  Identities=17%  Similarity=0.178  Sum_probs=52.1

Q ss_pred             CHHHHHHH----HHHHHHHhcCCCceEEEec-------CCCCHHHHHHHHHHHHhCCCCEEEECC-----CCCCC--CCC
Q psy9602         144 TTAERKLN----LEAWMTEAKTHGFTVMVQI-------GGTCFQEVVELAKHAESLNVHAVLCLP-----ELFFT--PAS  205 (239)
Q Consensus       144 T~eER~~l----i~~vve~~~G~rvpVIaGV-------g~~St~eAIelar~A~~aGAdaVlV~P-----P~y~~--~~s  205 (239)
                      |.+.|.++    ++.+.+.++. +++|.+=+       +..+.++++++++..+++|+|.+-|..     |....  ...
T Consensus       182 slenR~r~~~eiv~aIR~~vG~-d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~  260 (353)
T cd02930         182 SFENRMRFPVEIVRAVRAAVGE-DFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVP  260 (353)
T ss_pred             CHHHHhHHHHHHHHHHHHHcCC-CceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCC
Confidence            34555544    5555555544 56665322       235889999999999999999998842     21100  001


Q ss_pred             HHHHHHHHHHHHhhCCCCcEEE
Q psy9602         206 VEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       206 ~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +.....+.+.|.+.+ ++||+.
T Consensus       261 ~~~~~~~~~~ik~~v-~iPVi~  281 (353)
T cd02930         261 RGAFAWATAKLKRAV-DIPVIA  281 (353)
T ss_pred             chhhHHHHHHHHHhC-CCCEEE
Confidence            223456678898888 899875

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=91.06  E-value=4.4  Score=38.05  Aligned_cols=109  Identities=14%  Similarity=0.047  Sum_probs=69.4

Q ss_pred             HhhhcCCCCEEEeccccCCcC----------------------CCHHHHHHHHHHHHHHhcCCCceEEEecCCC------
Q psy9602         122 TLRMAPIIDQMVNGTTGEGVS----------------------MTTAERKLNLEAWMTEAKTHGFTVMVQIGGT------  173 (239)
Q Consensus       122 ~~~~~gg~glvV~GstGE~~s----------------------LT~eER~~li~~vve~~~G~rvpVIaGVg~~------  173 (239)
                      ....+.|.|.++.||..+-..                      |+...-..+++...+.. . ++|||+.++++      
T Consensus        76 ~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~-~-~~pvivsI~~~~~~~~~  153 (344)
T PRK05286         76 DALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY-R-GIPLGINIGKNKDTPLE  153 (344)
T ss_pred             HHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc-C-CCcEEEEEecCCCCCcc
Confidence            334567888888888776411                      11112233333333322 3 68999999865      


Q ss_pred             -CHHHHHHHHHHHHhCCCCEEEEC--CCCC--C-CCCCHHHHHHHHHHHHhhCCC----CcEEEEeCCCC
Q psy9602         174 -CFQEVVELAKHAESLNVHAVLCL--PELF--F-TPASVEDLVDYLRDVGEAAPA----TPLFYYHIPMF  233 (239)
Q Consensus       174 -St~eAIelar~A~~aGAdaVlV~--PP~y--~-~~~s~e~iv~yf~~Vaeatpd----LPIiLYN~P~~  233 (239)
                       +.++-.+.++.+.+ +||++.+-  -|..  . .....+.+.+.+++|.+++++    +||++==-|..
T Consensus       154 ~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~  222 (344)
T PRK05286        154 DAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL  222 (344)
T ss_pred             cCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC
Confidence             67888888888876 69998864  2332  0 111678888999999998832    89887655543

>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

Probab=91.06  E-value=1.2  Score=44.14  Aligned_cols=99  Identities=13%  Similarity=-0.074  Sum_probs=64.2

Q ss_pred             hhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHHhcC---CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         124 RMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTEAKT---HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       124 ~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~~~G---~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      ...||.+++=-= ..+.-.+-..+||...+..+++.+..   .+.-..++|++.++++.++.++.|++.|++++|+.+-.
T Consensus       192 ~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~  271 (475)
T CHL00040        192 CLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLT  271 (475)
T ss_pred             HHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccc
Confidence            345555544111 23456677889999887777665332   03333669998899999999999999999999998644


Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         200 FFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       200 y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +--.     .+...+..++.. ++||..+
T Consensus       272 ~G~~-----al~~l~~~~~~~-~l~IhaH  294 (475)
T CHL00040        272 GGFT-----ANTSLAHYCRDN-GLLLHIH  294 (475)
T ss_pred             cccc-----hHHHHHHHhhhc-CceEEec
Confidence            3222     244444444454 6666543

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=91.00  E-value=1.9  Score=41.08  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHHHhcCC---CceEEEecC---------------------CCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         144 TTAERKLNLEAWMTEAKTH---GFTVMVQIG---------------------GTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~---rvpVIaGVg---------------------~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      |.|.|.+++..+++.+...   +.||.+=++                     +.+.++++++++..+++|+|.+-|....
T Consensus       196 slenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~  275 (382)
T cd02931         196 SLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS  275 (382)
T ss_pred             CHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence            5688888777777766540   345554222                     3468999999999999999999987432


Q ss_pred             C-----CCC--C-CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         200 F-----FTP--A-SVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       200 y-----~~~--~-s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +     ..+  . .+.....+-+.+.+.+ ++||+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~  310 (382)
T cd02931         276 YDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPVIM  310 (382)
T ss_pred             CcccccccCCccCCcchhHHHHHHHHHHC-CCCEEE
Confidence            1     111  0 1122234556777777 899885

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=90.83  E-value=2.4  Score=36.23  Aligned_cols=77  Identities=13%  Similarity=0.048  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++-+.+.+...+.-+++.....+.+.-.+..+.....++|++++.++...   +......++..+.+.  ++|++++
T Consensus        15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~---~~~~~~~~i~~~~~~--~ipvV~i   89 (273)
T cd06292          15 PAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHA---DTHADHSHYERLAER--GLPVVLV   89 (273)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCC---cccchhHHHHHHHhC--CCCEEEE
Confidence            44444444444332456666666667777888888999999999999875422   223455666666554  7999999


Q ss_pred             eC
Q psy9602         229 HI  230 (239)
Q Consensus       229 N~  230 (239)
                      |.
T Consensus        90 ~~   91 (273)
T cd06292          90 NG   91 (273)
T ss_pred             cC
Confidence            85

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=90.69  E-value=1.1  Score=40.47  Aligned_cols=85  Identities=13%  Similarity=0.089  Sum_probs=60.5

Q ss_pred             HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      ....+.|.+++=....|         -.++++.+++..   ++||++  |+...+.++++++++.+.++||+++.+....
T Consensus       167 ~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~---~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i  234 (267)
T PRK07226        167 RVAAELGADIVKTNYTG---------DPESFREVVEGC---PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNV  234 (267)
T ss_pred             HHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhh
Confidence            33445677776333322         135566666543   577766  6666688999999999999999999999888


Q ss_pred             CCCCCCHHHHHHHHHHHHhh
Q psy9602         200 FFTPASVEDLVDYLRDVGEA  219 (239)
Q Consensus       200 y~~~~s~e~iv~yf~~Vaea  219 (239)
                      +..+ ++.+..+-+..+...
T Consensus       235 ~~~~-~p~~~~~~l~~~v~~  253 (267)
T PRK07226        235 FQHE-DPEAITRAISAVVHE  253 (267)
T ss_pred             hcCC-CHHHHHHHHHHHHhC
Confidence            8777 888888777776643

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=90.20  E-value=4.1  Score=40.34  Aligned_cols=97  Identities=14%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC-----CCCHHHHHHHHHHHHhCCCCEEE
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG-----GTCFQEVVELAKHAESLNVHAVL  194 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg-----~~St~eAIelar~A~~aGAdaVl  194 (239)
                      ++...+.|.+.+ ++-+..|         .+.++..++.++.....|...++     ..+.+..+++++.+.++|||.+.
T Consensus       101 v~~A~~~Gvd~irif~~lnd---------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~  171 (467)
T PRK14041        101 VKKVAEYGLDIIRIFDALND---------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSIC  171 (467)
T ss_pred             HHHHHHCCcCEEEEEEeCCH---------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            445566666654 6666555         23344444554432344543332     23578899999999999999999


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      +.-.....  ++.++.+.++.|-+++ ++||-++-
T Consensus       172 i~Dt~G~l--~P~~v~~Lv~~lk~~~-~vpI~~H~  203 (467)
T PRK14041        172 IKDMAGLL--TPKRAYELVKALKKKF-GVPVEVHS  203 (467)
T ss_pred             ECCccCCc--CHHHHHHHHHHHHHhc-CCceEEEe
Confidence            88766543  7899999999999999 69987654

>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III

Probab=90.14  E-value=2  Score=41.92  Aligned_cols=85  Identities=9%  Similarity=-0.095  Sum_probs=56.9

Q ss_pred             HHHHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602         113 LTCMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAES  187 (239)
Q Consensus       113 ~~~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~  187 (239)
                      +-+.++.-+.....||.+++=-= ....-.+...+||...+..+++.    ++. +.-..+++++. +++.++.++.+++
T Consensus       145 sp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~-~~~y~~NiT~~-~~em~~ra~~a~e  222 (412)
T cd08213         145 SPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGE-RKAYLANITAP-VREMERRAELVAD  222 (412)
T ss_pred             CHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceEEEEecCC-HHHHHHHHHHHHH
Confidence            33344443334445555554111 23445677889998887777554    333 45566699876 9999999999999


Q ss_pred             CCCCEEEECCCC
Q psy9602         188 LNVHAVLCLPEL  199 (239)
Q Consensus       188 aGAdaVlV~PP~  199 (239)
                      +|++++|+-+-.
T Consensus       223 ~G~~~~mv~~~~  234 (412)
T cd08213         223 LGGKYVMIDVVV  234 (412)
T ss_pred             hCCCeEEeeccc
Confidence            999999998643

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=90.13  E-value=2.7  Score=39.36  Aligned_cols=90  Identities=14%  Similarity=0.161  Sum_probs=57.6

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE---ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV---QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV  210 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa---GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv  210 (239)
                      +|+--=-.-.+.+|-.+=|+.++++..+...-|++   ......++++|+.++.++++|||++..-  -..   +.+++ 
T Consensus       121 cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~--al~---~~e~i-  194 (289)
T COG2513         121 CGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPE--ALT---DLEEI-  194 (289)
T ss_pred             cCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccc--cCC---CHHHH-
Confidence            45543345568899999999999987641233333   2344559999999999999999987543  221   44554 


Q ss_pred             HHHHHHHhhCC-CCcEEEEeCCC
Q psy9602         211 DYLRDVGEAAP-ATPLFYYHIPM  232 (239)
Q Consensus       211 ~yf~~Vaeatp-dLPIiLYN~P~  232 (239)
                         +.++++++ .+|+.+=-++.
T Consensus       195 ---~~f~~av~~pl~~N~t~~g~  214 (289)
T COG2513         195 ---RAFAEAVPVPLPANITEFGK  214 (289)
T ss_pred             ---HHHHHhcCCCeeeEeeccCC
Confidence               44455551 26665555543

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=90.04  E-value=3.8  Score=35.25  Aligned_cols=77  Identities=13%  Similarity=0.060  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      +..+++-+.+.+...+..+++..+.. +.....+.++.+...++|++++.|+.      .+.+...++.+.+.  ++|++
T Consensus        15 ~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~------~~~~~~~l~~~~~~--~ipvV   86 (271)
T cd06312          15 WTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD------PDALDPAIKRAVAA--GIPVI   86 (271)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC------hHHhHHHHHHHHHC--CCeEE
Confidence            34444444444433356777766666 88888899999999999999998742      23344556666554  79999


Q ss_pred             EEeCCC
Q psy9602         227 YYHIPM  232 (239)
Q Consensus       227 LYN~P~  232 (239)
                      +.|.+.
T Consensus        87 ~~~~~~   92 (271)
T cd06312          87 SFNAGD   92 (271)
T ss_pred             EeCCCC
Confidence            998753

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria

Probab=89.80  E-value=1.8  Score=40.72  Aligned_cols=84  Identities=13%  Similarity=-0.063  Sum_probs=56.2

Q ss_pred             HHHHHHhhHHhhhcCCCCEEEecc-ccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602         113 LTCMLLVGITLRMAPIIDQMVNGT-TGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAES  187 (239)
Q Consensus       113 ~~~~l~~~v~~~~~gg~glvV~Gs-tGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~  187 (239)
                      +.+.++.-+.....+|.+++=-=. ...-.+...+||...+..+++.    ++. +.-..+++++.+.++.++.++.|++
T Consensus        28 sp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~-~~ly~~NiT~~~~~em~~ra~~a~~  106 (309)
T PF00016_consen   28 SPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGE-KKLYAANITADTPDEMIERAEYAKE  106 (309)
T ss_dssp             -HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS---EEEEEE-SSSHHHHHHHHHHHHH
T ss_pred             cccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccce-ecceecccccccHHHHHHhhhhhhh
Confidence            444444434444567777661111 1355677889999887776654    433 5566779999899999999999999


Q ss_pred             CCCCEEEECC
Q psy9602         188 LNVHAVLCLP  197 (239)
Q Consensus       188 aGAdaVlV~P  197 (239)
                      .|++++|+-+
T Consensus       107 ~G~~~vmv~~  116 (309)
T PF00016_consen  107 AGANAVMVNV  116 (309)
T ss_dssp             HTGSEEEEEH
T ss_pred             hccchhhccc
Confidence            9999999974

It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=89.73  E-value=4.4  Score=34.78  Aligned_cols=79  Identities=22%  Similarity=0.090  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCC-CCH-HHHHHHHHHHHhCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHhhC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCF-QEVVELAKHAESLNVHAVLCLPELFFT-PASVEDLVDYLRDVGEAA  220 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~-~St-~eAIelar~A~~aGAdaVlV~PP~y~~-~~s~e~iv~yf~~Vaeat  220 (239)
                      ..+.-.++++.+.+.+.   +||.+.+.. .+. ++++++++..++.|+|.+.+....... + ....-+++++.+.+..
T Consensus       107 ~~~~~~eii~~v~~~~~---~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~-~~~~~~~~~~~i~~~~  182 (231)
T cd02801         107 DPELVAEIVRAVREAVP---IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRY-SGPADWDYIAEIKEAV  182 (231)
T ss_pred             CHHHHHHHHHHHHHhcC---CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcC-CCCCCHHHHHHHHhCC
Confidence            33444566666655542   577776532 222 489999999999999999887643211 1 1122356677888877


Q ss_pred             CCCcEEE
Q psy9602         221 PATPLFY  227 (239)
Q Consensus       221 pdLPIiL  227 (239)
                       ++||+.
T Consensus       183 -~ipvi~  188 (231)
T cd02801         183 -SIPVIA  188 (231)
T ss_pred             -CCeEEE
Confidence             899875

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=89.68  E-value=1.6  Score=39.12  Aligned_cols=84  Identities=12%  Similarity=0.001  Sum_probs=58.1

Q ss_pred             HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      ....+.|.+++-.+..     .    -.+.++.+++..   ++||++  |+...+.+++++.+..+.++||+++.+..-.
T Consensus       163 ~~a~~~GADyikt~~~-----~----~~~~l~~~~~~~---~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i  230 (258)
T TIGR01949       163 RLGAELGADIVKTPYT-----G----DIDSFRDVVKGC---PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNI  230 (258)
T ss_pred             HHHHHHCCCEEeccCC-----C----CHHHHHHHHHhC---CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHh
Confidence            3445566665543321     1    244555555543   578776  5666679999999999999999999999877


Q ss_pred             CCCCCCHHHHHHHHHHHHh
Q psy9602         200 FFTPASVEDLVDYLRDVGE  218 (239)
Q Consensus       200 y~~~~s~e~iv~yf~~Vae  218 (239)
                      +..+ ++.+..+-++.+..
T Consensus       231 ~~~~-dp~~~~~~l~~~i~  248 (258)
T TIGR01949       231 FQHD-DPVGITKAVCKIVH  248 (258)
T ss_pred             hcCC-CHHHHHHHHHHHHh
Confidence            7666 77777777766654

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=89.58  E-value=3.1  Score=38.05  Aligned_cols=131  Identities=19%  Similarity=0.036  Sum_probs=75.8

Q ss_pred             hhhhcc-ccccccccCCC--CCccccceEEEeehhhHHH------HHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHH
Q psy9602          78 RKRLRN-AHGEVVMIDPS--DLPKRAKWTIIITAGLLLL------TCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAER  148 (239)
Q Consensus        78 ~~~~~~-~~p~~~~iD~~--~l~~~~~W~iv~~A~~~~~------~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER  148 (239)
                      +.+|.. +.|+...||-.  -|....++-+++.|+....      ...|+..+   .+.+. .+++|+.+   ..|.++.
T Consensus        38 ~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa---~~~g~-~~~~~~~~---~~~~~~i  110 (299)
T cd02809          38 RIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAA---AAAGI-PFTLSTVS---TTSLEEV  110 (299)
T ss_pred             hceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHH---HHcCC-CEEecCCC---cCCHHHH
Confidence            334443 77776666655  2333446677777775432      33443332   12222 23333322   2344433


Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEEC--CCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCL--PELFFTPASVEDLVDYLRDVGEAAPATPL  225 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~--PP~y~~~~s~e~iv~yf~~VaeatpdLPI  225 (239)
                      .+.       .   ..|+++++... +.+...++++.+.+.|++++.+.  .|.. .. .  ...+..+.|.+++ ++||
T Consensus       111 ~~~-------~---~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~-~~-~--~~~~~i~~l~~~~-~~pv  175 (299)
T cd02809         111 AAA-------A---PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVL-GR-R--LTWDDLAWLRSQW-KGPL  175 (299)
T ss_pred             HHh-------c---CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-CC-C--CCHHHHHHHHHhc-CCCE
Confidence            322       2   24888887654 78888899999999999998874  2321 11 1  2346778888888 7999


Q ss_pred             EEEeC
Q psy9602         226 FYYHI  230 (239)
Q Consensus       226 iLYN~  230 (239)
                      ++=..
T Consensus       176 ivK~v  180 (299)
T cd02809         176 ILKGI  180 (299)
T ss_pred             EEeec
Confidence            88643

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein

Probab=89.54  E-value=5.3  Score=35.63  Aligned_cols=82  Identities=11%  Similarity=0.177  Sum_probs=56.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA  222 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd  222 (239)
                      |..+=+..+.+.+.+++......+++.-+..+.....+..+.....++|++++.|+.      ...+...++.+.+ . +
T Consensus         8 ~~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~------~~~~~~~l~~~~~-~-~   79 (302)
T TIGR02634         8 LRLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQN------GQVLSNAVQEAKD-E-G   79 (302)
T ss_pred             cchhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------hhHHHHHHHHHHH-C-C
Confidence            444455555555555555434677776677788888889999999999999998643      2334455666555 4 7


Q ss_pred             CcEEEEeCCC
Q psy9602         223 TPLFYYHIPM  232 (239)
Q Consensus       223 LPIiLYN~P~  232 (239)
                      +||+++|-+.
T Consensus        80 iPvV~~d~~~   89 (302)
T TIGR02634        80 IKVVAYDRLI   89 (302)
T ss_pred             CeEEEecCcC
Confidence            9999998764

Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=89.48  E-value=2.9  Score=38.76  Aligned_cols=82  Identities=20%  Similarity=0.176  Sum_probs=53.8

Q ss_pred             CHHHHH----HHHHHHHHHhcCCCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCC----CCCHHH
Q psy9602         144 TTAERK----LNLEAWMTEAKTHGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFT----PASVED  208 (239)
Q Consensus       144 T~eER~----~li~~vve~~~G~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~----~~s~e~  208 (239)
                      +.+.|.    ++++.+.+.++. +.||.+=++       +.+.++++++++..++.|+|.+-+....+..    +.....
T Consensus       199 sl~nr~rf~~eiv~aIR~~vG~-d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~  277 (336)
T cd02932         199 SLENRMRFLLEVVDAVRAVWPE-DKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGY  277 (336)
T ss_pred             CHHHHhHHHHHHHHHHHHHcCC-CceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccc
Confidence            445554    455555555544 567776333       4568999999999999999999876332211    101222


Q ss_pred             HHHHHHHHHhhCCCCcEEE
Q psy9602         209 LVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       209 iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++.|.+.+ ++||+.
T Consensus       278 ~~~~~~~ir~~~-~iPVi~  295 (336)
T cd02932         278 QVPFAERIRQEA-GIPVIA  295 (336)
T ss_pred             cHHHHHHHHhhC-CCCEEE
Confidence            357788899888 899886

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=89.45  E-value=2.2  Score=36.60  Aligned_cols=67  Identities=22%  Similarity=0.206  Sum_probs=52.9

Q ss_pred             hcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CCC----------CCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         159 AKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--ELF----------FTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       159 ~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~y----------~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      ... +.|+++.+++.+.++..+.++.++++|+|+|-+--  |..          ... +.+.+.+..+++.+.+ +.|+.
T Consensus        51 ~~~-~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~-~~~~~~eii~~v~~~~-~~~v~  127 (231)
T cd02801          51 NPE-ERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLK-DPELVAEIVRAVREAV-PIPVT  127 (231)
T ss_pred             Ccc-CCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcC-CHHHHHHHHHHHHHhc-CCCEE
Confidence            444 79999999999999999999999999999997742  221          011 5677888888888888 57887


Q ss_pred             EE
Q psy9602         227 YY  228 (239)
Q Consensus       227 LY  228 (239)
                      +-
T Consensus       128 vk  129 (231)
T cd02801         128 VK  129 (231)
T ss_pred             EE
Confidence            74

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=89.42  E-value=1.2  Score=41.70  Aligned_cols=100  Identities=17%  Similarity=0.134  Sum_probs=73.3

Q ss_pred             cCCC--CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe--cCCCCH-HHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602         126 APII--DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ--IGGTCF-QEVVELAKHAESLNVHAVLCLPELF  200 (239)
Q Consensus       126 ~gg~--glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG--Vg~~St-~eAIelar~A~~aGAdaVlV~PP~y  200 (239)
                      +.||  .-+..+..|.+...+.+--.++++.+++.++  ++||-+=  +|-... ..+.+.++.++++|++++.|-.=--
T Consensus        99 N~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~--~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr  176 (323)
T COG0042          99 NCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG--DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR  176 (323)
T ss_pred             eCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC--CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccH
Confidence            3444  3478889999999999999999999999985  3677662  233333 3788999999999999999986331


Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         201 FTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       201 ~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ....+...-+++...|.+..+++||+.
T Consensus       177 ~~~y~~~ad~~~I~~vk~~~~~ipvi~  203 (323)
T COG0042         177 AQGYLGPADWDYIKELKEAVPSIPVIA  203 (323)
T ss_pred             HhcCCCccCHHHHHHHHHhCCCCeEEe
Confidence            110022367788888888884488775

>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria

Probab=89.42  E-value=2.7  Score=41.16  Aligned_cols=80  Identities=16%  Similarity=0.039  Sum_probs=56.3

Q ss_pred             cCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH
Q psy9602         138 GEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL  213 (239)
Q Consensus       138 GE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf  213 (239)
                      ..-.+...+||...+..+++.    ++. ++-..+++++ ++++.++.++.|+++|++++|+-+-.+ ..       .-+
T Consensus       200 ~~q~f~p~~eRv~~~~~ai~~a~~eTG~-~~~ya~NiT~-~~~em~~ra~~a~~~G~~~vmv~~~~~-G~-------~al  269 (424)
T cd08208         200 ADVDWCPLEERAALLGKARRRAEAETGV-PKIYLANITD-EVDRLMELHDVAVRNGANALLINAMPV-GL-------SAV  269 (424)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEeeecc-cH-------HHH
Confidence            455667779998866655554    443 4555569998 699999999999999999999986433 11       225


Q ss_pred             HHHHhhCCCCcEEEE
Q psy9602         214 RDVGEAAPATPLFYY  228 (239)
Q Consensus       214 ~~VaeatpdLPIiLY  228 (239)
                      ..|++.+ ++||..+
T Consensus       270 ~~L~~~~-~l~ihaH  283 (424)
T cd08208         270 RMLRKHA-QVPLIAH  283 (424)
T ss_pred             HHHHhcC-CCeEEec
Confidence            5566666 6777544

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=89.22  E-value=3.9  Score=36.80  Aligned_cols=85  Identities=12%  Similarity=0.011  Sum_probs=58.8

Q ss_pred             cccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHH
Q psy9602         136 TTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLR  214 (239)
Q Consensus       136 stGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~  214 (239)
                      ..|+...-..+--.++++.+.+   - ++||.+=+... +..+.+++++.++++|+|++.|-.  .+.. ....-.++.+
T Consensus       111 g~G~~Ll~dp~~l~~iv~av~~---~-~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~g-~~~a~~~~I~  183 (231)
T TIGR00736       111 GIGQELLKNKELLKEFLTKMKE---L-NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYPG-KPYADMDLLK  183 (231)
T ss_pred             CCchhhcCCHHHHHHHHHHHHc---C-CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCCC-CchhhHHHHH
Confidence            4566666666666677777662   2 58999866543 345789999999999999999953  2222 2224578888


Q ss_pred             HHHhhCCCCcEEE
Q psy9602         215 DVGEAAPATPLFY  227 (239)
Q Consensus       215 ~VaeatpdLPIiL  227 (239)
                      .|.++++++|||-
T Consensus       184 ~i~~~~~~ipIIg  196 (231)
T TIGR00736       184 ILSEEFNDKIIIG  196 (231)
T ss_pred             HHHHhcCCCcEEE
Confidence            9998873488663

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=89.12  E-value=7.1  Score=36.76  Aligned_cols=97  Identities=14%  Similarity=0.036  Sum_probs=63.8

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe---cCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ---IGGTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG---Vg~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      ++...+.+.+.+ +.-+..|.     +.-.+.++.+.+.    ...|.+.   ....+.+..+++++.+.+.|++.+.+.
T Consensus        93 l~~a~~~gvd~iri~~~~~e~-----d~~~~~i~~ak~~----G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~  163 (333)
T TIGR03217        93 LKAAYDAGARTVRVATHCTEA-----DVSEQHIGMAREL----GMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV  163 (333)
T ss_pred             HHHHHHCCCCEEEEEeccchH-----HHHHHHHHHHHHc----CCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence            344455555544 54444443     2223333333332    2344333   345678999999999999999999888


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCC-CCcEEEE
Q psy9602         197 PELFFTPASVEDLVDYLRDVGEAAP-ATPLFYY  228 (239)
Q Consensus       197 PP~y~~~~s~e~iv~yf~~Vaeatp-dLPIiLY  228 (239)
                      -.....  +++++.++++.+-+..+ ++||.++
T Consensus       164 DT~G~~--~P~~v~~~v~~l~~~l~~~i~ig~H  194 (333)
T TIGR03217       164 DSAGAM--LPDDVRDRVRALKAVLKPETQVGFH  194 (333)
T ss_pred             cCCCCC--CHHHHHHHHHHHHHhCCCCceEEEE
Confidence            876533  78999999999998873 4888765

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK09816 thrL thr operon leader peptide; Provisional

Probab=89.11  E-value=0.46  Score=28.65  Aligned_cols=19  Identities=63%  Similarity=0.809  Sum_probs=15.6

Q ss_pred             ceeEEEEEEEeecCCCCCC
Q psy9602           2 ETTITTVTTITTGGGSGRQ   20 (239)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~   20 (239)
                      .||++|..|||||.|.|..
T Consensus         5 stt~~ttitittgngag~~   23 (26)
T PRK09816          5 STTITTTITITTGNGAGXX   23 (26)
T ss_pred             eeEEEEEEEEEeCCccccc
Confidence            4778888899999998864

>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase

Probab=88.93  E-value=2.8  Score=40.62  Aligned_cols=109  Identities=14%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             HHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCCC
Q psy9602         116 MLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       116 ~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aGA  190 (239)
                      .++.-+.....||.+++=-= ....-.+-..+||...+..+++.    ++. ++-..+++++. +++.++.++.+++.|+
T Consensus       141 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~-~~~ya~NiT~~-~~em~~ra~~~~~~G~  218 (391)
T cd08209         141 DLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGR-RTLYAVNLTGP-VFTLKEKARRLVEAGA  218 (391)
T ss_pred             HHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceEEEEcCCC-HHHHHHHHHHHHHhCC
Confidence            33333333444555544110 23455677889998877776665    433 45567799875 8999999999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTR  235 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG  235 (239)
                      +++|+.+-.+ ..   .    -++.|++. |+..+.|+-.|...|
T Consensus       219 ~~~mv~~~~~-G~---~----~l~~l~~~-~~~~lpIhaHra~~g  254 (391)
T cd08209         219 NALLFNVFAY-GL---D----VLEALASD-PEINVPIFAHPAFAG  254 (391)
T ss_pred             CEEEEecccc-ch---H----HHHHHHhc-CcCCcEEEecCCccc
Confidence            9999987443 21   1    25556653 344444444555444

Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=88.75  E-value=6.1  Score=40.12  Aligned_cols=96  Identities=14%  Similarity=0.153  Sum_probs=64.8

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC--C---CCHHHHHHHHHHHHhCCCCEEE
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG--G---TCFQEVVELAKHAESLNVHAVL  194 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg--~---~St~eAIelar~A~~aGAdaVl  194 (239)
                      ++...+.|.+.+ ++-+..+.         +-++..++.++.....|.+.++  .   .+.+..+++++.+.++|||.+.
T Consensus        97 v~~a~~~Gvd~irif~~lnd~---------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~  167 (582)
T TIGR01108        97 VKKAVENGMDVFRIFDALNDP---------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSIC  167 (582)
T ss_pred             HHHHHHCCCCEEEEEEecCcH---------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            444566666654 66555553         2233344444322344544432  1   2579999999999999999998


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +-......  ++.++.+.++.|.+.. ++||-++
T Consensus       168 i~Dt~G~~--~P~~v~~lv~~lk~~~-~~pi~~H  198 (582)
T TIGR01108       168 IKDMAGIL--TPKAAYELVSALKKRF-GLPVHLH  198 (582)
T ss_pred             ECCCCCCc--CHHHHHHHHHHHHHhC-CCceEEE
Confidence            88765532  7899999999999999 6898754

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=88.58  E-value=2.7  Score=39.78  Aligned_cols=121  Identities=13%  Similarity=0.124  Sum_probs=71.5

Q ss_pred             ccccceEEEeehhhHHHH------HHHHhhHHhhhcCCCCE-EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe
Q psy9602          97 PKRAKWTIIITAGLLLLT------CMLLVGITLRMAPIIDQ-MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ  169 (239)
Q Consensus        97 ~~~~~W~iv~~A~~~~~~------~~l~~~v~~~~~gg~gl-vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG  169 (239)
                      -+..++-+++.|++..+.      ..|+..+.   +  .|+ +..|+.  ...+..+|..+-++.+.+...  +.|+++.
T Consensus        56 g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~---~--~G~~~~~Gs~--~~~~~~~~~~~~~~~vr~~~p--~~p~~aN  126 (352)
T PRK05437         56 GKKLSAPFLINAMTGGSEKAKEINRKLAEAAE---E--LGIAMGVGSQ--RAALKDPELADSFSVVRKVAP--DGLLFAN  126 (352)
T ss_pred             CceecCCEEecccCCCChhHHHHHHHHHHHHH---H--cCCCeEeccc--HhhccChhhHHHHHHHHHHCC--CceEEee
Confidence            356778888888877643      34433311   1  222 233443  222334457777788777764  4799998


Q ss_pred             cCCCCH-----HHHHHHHHHHHhCCCCEEEECCCCC---CCCC---CHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         170 IGGTCF-----QEVVELAKHAESLNVHAVLCLPELF---FTPA---SVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       170 Vg~~St-----~eAIelar~A~~aGAdaVlV~PP~y---~~~~---s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      ++....     ++..+   ..+.++||++-+--+..   ..+.   +.+.+++.++.|.+.+ +.||++=-.
T Consensus       127 l~~~~~~~~~~~~~~~---~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~  194 (352)
T PRK05437        127 LGAVQLYGYGVEEAQR---AVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEV  194 (352)
T ss_pred             cCccccCCCCHHHHHH---HHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeC
Confidence            887655     33333   33445677776653221   1111   3455778899999998 899998544

>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=88.57  E-value=7.7  Score=32.98  Aligned_cols=79  Identities=15%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL  225 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI  225 (239)
                      .=+.++++.+.+.+...+.-+++..+..+.+...+..+.+.+.++|++++.|+.      .......++.+.+ . ++|+
T Consensus        12 ~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~------~~~~~~~~~~~~~-~-~ipv   83 (267)
T cd06322          12 PFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVD------SKGIRAAIAKAKK-A-GIPV   83 (267)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hhhhHHHHHHHHH-C-CCCE
Confidence            334455555555444435677777777778888888989899999999998642      1223344566544 4 7999


Q ss_pred             EEEeCCC
Q psy9602         226 FYYHIPM  232 (239)
Q Consensus       226 iLYN~P~  232 (239)
                      +++|.+.
T Consensus        84 V~~~~~~   90 (267)
T cd06322          84 ITVDIAA   90 (267)
T ss_pred             EEEcccC
Confidence            9999753

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=88.55  E-value=10  Score=35.27  Aligned_cols=105  Identities=16%  Similarity=0.056  Sum_probs=66.6

Q ss_pred             hhhcCCCCEEEeccccCCc-------------------------CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC---
Q psy9602         123 LRMAPIIDQMVNGTTGEGV-------------------------SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC---  174 (239)
Q Consensus       123 ~~~~gg~glvV~GstGE~~-------------------------sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S---  174 (239)
                      ...+.|.|.++.+|..+-.                         +...++..+-++.   ...- +.||++.++.++   
T Consensus        67 ~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~---~~~~-~~plivsi~g~~~~~  142 (327)
T cd04738          67 ALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKK---RRPR-GGPLGVNIGKNKDTP  142 (327)
T ss_pred             HHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHH---hccC-CCeEEEEEeCCCCCc
Confidence            3346788888888877641                         2223444444433   2222 689999998876   


Q ss_pred             ----HHHHHHHHHHHHhCCCCEEEE--CCCCCCC---CCCHHHHHHHHHHHHhhCC----CCcEEEEeCCC
Q psy9602         175 ----FQEVVELAKHAESLNVHAVLC--LPELFFT---PASVEDLVDYLRDVGEAAP----ATPLFYYHIPM  232 (239)
Q Consensus       175 ----t~eAIelar~A~~aGAdaVlV--~PP~y~~---~~s~e~iv~yf~~Vaeatp----dLPIiLYN~P~  232 (239)
                          .++-++.++.+.+ +||++.+  .-|++-.   ..+.+.+.+.+++|.+.+.    ++||++==-|.
T Consensus       143 ~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~  212 (327)
T cd04738         143 LEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD  212 (327)
T ss_pred             ccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC
Confidence                5667777777665 4899887  3354311   1167888899999988872    28887755443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=88.54  E-value=2.1  Score=39.38  Aligned_cols=79  Identities=22%  Similarity=0.103  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP  221 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp  221 (239)
                      .+--.++++.+.+.+   .+||.+-+.   ..+..+.+++++.++++|+|++.+.+..-....+.....++.+.|.+.+ 
T Consensus       116 ~~~~~ei~~~vr~~~---~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-  191 (319)
T TIGR00737       116 PDLIGKIVKAVVDAV---DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV-  191 (319)
T ss_pred             HHHHHHHHHHHHhhc---CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC-
Confidence            444456666666555   368877552   1233467899999999999999986422100002234578899999998 


Q ss_pred             CCcEEE
Q psy9602         222 ATPLFY  227 (239)
Q Consensus       222 dLPIiL  227 (239)
                      ++||+.
T Consensus       192 ~ipvi~  197 (319)
T TIGR00737       192 RIPVIG  197 (319)
T ss_pred             CCcEEE
Confidence            799764

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PLN02321 2-isopropylmalate synthase

Probab=88.49  E-value=6.7  Score=40.31  Aligned_cols=91  Identities=12%  Similarity=0.025  Sum_probs=72.1

Q ss_pred             EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCc-eEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602         131 QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGF-TVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFF  201 (239)
Q Consensus       131 lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rv-pVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~  201 (239)
                      +-++.++++.     ...|.+|-++.+..+++.++.... -|.++.   +..+.+.+++.++.+.++||+.+.+..-..+
T Consensus       186 I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~  265 (632)
T PLN02321        186 IHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGY  265 (632)
T ss_pred             EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence            5577788887     478999999999999998876223 355544   3467899999999999999999888776654


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCC
Q psy9602         202 TPASVEDLVDYLRDVGEAAPAT  223 (239)
Q Consensus       202 ~~~s~e~iv~yf~~VaeatpdL  223 (239)
                      .  +++++.++++.|.+.+|+.
T Consensus       266 ~--~P~~v~~li~~l~~~~~~~  285 (632)
T PLN02321        266 T--LPSEFGQLIADIKANTPGI  285 (632)
T ss_pred             C--CHHHHHHHHHHHHHhcCCC
Confidence            3  6899999999999988643

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=88.41  E-value=2.7  Score=40.03  Aligned_cols=88  Identities=11%  Similarity=0.067  Sum_probs=59.4

Q ss_pred             CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--
Q psy9602         127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--  204 (239)
Q Consensus       127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--  204 (239)
                      |..+++|.++.|....=...- .+.+..+.+.+++ ++|||+.=+=.+-.++++..    .+||++|++--|+.|...  
T Consensus       242 G~d~I~vsnhGGr~ld~~~~~-~~~l~~i~~a~~~-~i~vi~dGGIr~g~Di~kaL----alGA~~V~iGr~~l~~la~~  315 (351)
T cd04737         242 GADGIWVSNHGGRQLDGGPAS-FDSLPEIAEAVNH-RVPIIFDSGVRRGEHVFKAL----ASGADAVAVGRPVLYGLALG  315 (351)
T ss_pred             CCCEEEEeCCCCccCCCCchH-HHHHHHHHHHhCC-CCeEEEECCCCCHHHHHHHH----HcCCCEEEECHHHHHHHhhc
Confidence            445677877777542212222 2455666777777 89999866656666665533    389999999999876532  


Q ss_pred             CHHHHHHHHHHHHhhC
Q psy9602         205 SVEDLVDYLRDVGEAA  220 (239)
Q Consensus       205 s~e~iv~yf~~Vaeat  220 (239)
                      .++++..+++.+.+..
T Consensus       316 G~~gv~~~l~~l~~El  331 (351)
T cd04737         316 GAQGVASVLEHLNKEL  331 (351)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            7888888888776653

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=88.41  E-value=5.4  Score=37.91  Aligned_cols=85  Identities=9%  Similarity=0.146  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEec--CC-------------CCHHHHHHHHHHHHh--CCCCEEEECCCCCC-------
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQI--GG-------------TCFQEVVELAKHAES--LNVHAVLCLPELFF-------  201 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGV--g~-------------~St~eAIelar~A~~--aGAdaVlV~PP~y~-------  201 (239)
                      +++.+.++.+.+.+....+|+++-+  ..             ...+-.+..++.+.+  +|+|-+=+-.|.-.       
T Consensus       139 ~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~  218 (340)
T PRK12858        139 DRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFD  218 (340)
T ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccc
Confidence            4566666666666665589998842  11             245678888899995  99999999888422       


Q ss_pred             ----CCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         202 ----TPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       202 ----~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                          -. +.++..++|+.+.+++ ++|+++---+.
T Consensus       219 ~~~~~~-~~~~~~~~f~~~~~a~-~~P~vvlsgG~  251 (340)
T PRK12858        219 GFEEAY-TQEEAFKLFREQSDAT-DLPFIFLSAGV  251 (340)
T ss_pred             cccccc-cHHHHHHHHHHHHhhC-CCCEEEECCCC
Confidence                11 6788999999999999 79999865543

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=88.35  E-value=5.8  Score=37.54  Aligned_cols=113  Identities=5%  Similarity=0.027  Sum_probs=76.5

Q ss_pred             cccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHH
Q psy9602          98 KRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQE  177 (239)
Q Consensus        98 ~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~e  177 (239)
                      ....|-+++.|+++-.+..|+.-....          |+.|=.+.++.|++....+    ..+.  ..+++|++.....+
T Consensus        34 ~~l~~P~~inAM~t~iN~~LA~~a~~~----------G~~~~~~k~~~e~~~~~~r----~~~~--~~l~v~~~vg~~~~   97 (326)
T PRK05458         34 RTFKLPVVPANMQTIIDEKIAEWLAEN----------GYFYIMHRFDPEARIPFIK----DMHE--QGLIASISVGVKDD   97 (326)
T ss_pred             cEecCcEEEecccchhHHHHHHHHHHc----------CCEEEEecCCHHHHHHHHH----hccc--cccEEEEEecCCHH
Confidence            345678888888876777775532111          4555556678888887773    3332  13366766655667


Q ss_pred             HHHHHHHHHhCCC--CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         178 VVELAKHAESLNV--HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       178 AIelar~A~~aGA--daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      ..+.+....++|+  |.+.+-..+   + ..+.+.+..+.|.+..|+.|||.=|.
T Consensus        98 ~~~~~~~Lv~ag~~~d~i~iD~a~---g-h~~~~~e~I~~ir~~~p~~~vi~g~V  148 (326)
T PRK05458         98 EYDFVDQLAAEGLTPEYITIDIAH---G-HSDSVINMIQHIKKHLPETFVIAGNV  148 (326)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCC---C-chHHHHHHHHHHHhhCCCCeEEEEec
Confidence            7888888888855  999986655   3 45667777888888888899988554

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria

Probab=88.33  E-value=5.7  Score=33.54  Aligned_cols=60  Identities=20%  Similarity=0.304  Sum_probs=41.4

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +..++...+..+.+...+.++.+.+.++|++++.|+.  .. .    ...++.+.+ . ++|++++|.+
T Consensus        29 g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~--~~-~----~~~~~~~~~-~-~ipvV~~~~~   88 (268)
T cd06289          29 GYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAA--GT-S----PDLLKRLAE-S-GIPVVLVARE   88 (268)
T ss_pred             CCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCC--Cc-c----HHHHHHHHh-c-CCCEEEEecc
Confidence            4566666666777878888888888899999998642  11 1    124444444 4 7899999865

This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=88.20  E-value=6.2  Score=36.73  Aligned_cols=83  Identities=14%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCC-------C-CCCC-CHHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPEL-------F-FTPA-SVEDLV  210 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~-------y-~~~~-s~e~iv  210 (239)
                      .||.+|..+.++.+++.+   .+||++=+  |-.+..++.+.++...++|+.++.+-.-.       . -+.. +.++..
T Consensus        60 ~l~~~e~~~~~~~I~~~~---~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~  136 (292)
T PRK11320         60 ITTLDDVLIDVRRITDAC---DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMV  136 (292)
T ss_pred             CCCHHHHHHHHHHHHhcc---CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHH
Confidence            789999999999999887   58999944  22388999999999999999999995521       1 1112 778899


Q ss_pred             HHHHHHHhhCCCCcEEE
Q psy9602         211 DYLRDVGEAAPATPLFY  227 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiL  227 (239)
                      ...++..++..+.+++|
T Consensus       137 ~kI~Aa~~a~~~~d~~I  153 (292)
T PRK11320        137 DRIKAAVDARTDPDFVI  153 (292)
T ss_pred             HHHHHHHHhccCCCeEE
Confidence            99998888753455554

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=88.15  E-value=6.5  Score=33.75  Aligned_cols=77  Identities=17%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      =...++..+.+.+..++.-++..-+..+.+.-.+..+...+.++|++++.+..   +   +.+.+.++.+.+ . ++|++
T Consensus        13 ~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~---~---~~~~~~i~~~~~-~-~iPvV   84 (282)
T cd06318          13 FFAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVD---P---EGLVPAVAAAKA-A-GVPVV   84 (282)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCC---c---cchHHHHHHHHH-C-CCCEE
Confidence            34445555544444334566665556677777888899999999999997642   1   223344555544 4 79999


Q ss_pred             EEeCC
Q psy9602         227 YYHIP  231 (239)
Q Consensus       227 LYN~P  231 (239)
                      ++|.+
T Consensus        85 ~~~~~   89 (282)
T cd06318          85 VVDSS   89 (282)
T ss_pred             EecCC
Confidence            99975

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=88.10  E-value=3  Score=38.98  Aligned_cols=126  Identities=17%  Similarity=0.152  Sum_probs=70.3

Q ss_pred             CccccceEEEeehhhHHH------HHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe
Q psy9602          96 LPKRAKWTIIITAGLLLL------TCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ  169 (239)
Q Consensus        96 l~~~~~W~iv~~A~~~~~------~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG  169 (239)
                      +....++-+++.|++...      +..|+..+   -+.+.. +..|+.+  ..|..+|..+-.+.+.+.. . .+|+++.
T Consensus        48 ~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a---~~~g~~-~~~Gs~~--~~~~~~~~~~~~~~vr~~~-~-~~p~i~n  119 (333)
T TIGR02151        48 LGKRLKAPFYINAMTGGSEEAGKINRNLARAA---RELGIP-MGVGSQR--AALKDPETADTFEVVREEA-P-NGPLIAN  119 (333)
T ss_pred             CCccccCCEEEeCCCCCchhHHHHHHHHHHHH---HHcCCC-eEEcCch--hhccChhhHhHHHHHHHhC-C-CCcEEee
Confidence            446688889999988765      55554432   122222 2344422  2233444443446666643 3 6899998


Q ss_pred             cCCCCHHH--HHHHHHHHHhCCCCEEEECCCCC---CCCC---CHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         170 IGGTCFQE--VVELAKHAESLNVHAVLCLPELF---FTPA---SVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       170 Vg~~St~e--AIelar~A~~aGAdaVlV~PP~y---~~~~---s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      ++......  .-+..+..+.++||++-+--+..   ..+.   +.+.+++.++.|.+.+ ++||++=-.
T Consensus       120 l~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~  187 (333)
T TIGR02151       120 IGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQL-SVPVIVKEV  187 (333)
T ss_pred             cCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEec
Confidence            87654422  11222233334667666543211   1111   3455668899999999 899998643

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=88.05  E-value=7.9  Score=34.62  Aligned_cols=95  Identities=19%  Similarity=0.195  Sum_probs=59.3

Q ss_pred             hHHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe-------cCCCCHHHHHHHHHHHHhCCCC
Q psy9602         120 GITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ-------IGGTCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       120 ~v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG-------Vg~~St~eAIelar~A~~aGAd  191 (239)
                      .++..++.|...+ +--..|   ..+..|..+.++.+.+.+...++|+++-       ++..+.+...+.++.|.++|||
T Consensus        95 ~v~~al~~Ga~~v~~~~~~g---~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GAD  171 (258)
T TIGR01949        95 TVEDAIRMGADAVSIHVNVG---SDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGAD  171 (258)
T ss_pred             eHHHHHHCCCCEEEEEEecC---CchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCC
Confidence            3556677666432 222222   1345677788888888776446888873       2333333333447999999999


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .+-+.    |.. +    .+.++.+.+.+ .+||+.
T Consensus       172 yikt~----~~~-~----~~~l~~~~~~~-~iPVva  197 (258)
T TIGR01949       172 IVKTP----YTG-D----IDSFRDVVKGC-PAPVVV  197 (258)
T ss_pred             EEecc----CCC-C----HHHHHHHHHhC-CCcEEE
Confidence            99974    222 2    45577788777 699865

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=88.02  E-value=5.8  Score=37.17  Aligned_cols=86  Identities=15%  Similarity=0.099  Sum_probs=66.4

Q ss_pred             CCcCCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC--------CCC-CHH
Q psy9602         139 EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPELFF--------TPA-SVE  207 (239)
Q Consensus       139 E~~sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y~--------~~~-s~e  207 (239)
                      -+..+|.+|-...++...+.+   ++||++-+  |-.+..++.+.++.+.++|+.++.+-.-..-        ++. +.+
T Consensus        57 D~~~~t~~e~~~~vrrI~~a~---~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~  133 (289)
T COG2513          57 DLGITTLDEVLADARRITDAV---DLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSID  133 (289)
T ss_pred             ccccccHHHHHHHHHHHHhhc---CCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHH
Confidence            445567899999999999887   68999944  3333889999999999999999988653321        222 889


Q ss_pred             HHHHHHHHHHhhCCCCcEEE
Q psy9602         208 DLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       208 ~iv~yf~~VaeatpdLPIiL  227 (239)
                      +.++..+++.++.++-+++|
T Consensus       134 e~v~rIkAa~~a~~~~~fvi  153 (289)
T COG2513         134 EMVDRIKAAVEARRDPDFVI  153 (289)
T ss_pred             HHHHHHHHHHHhccCCCeEE
Confidence            99999999999986655554

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=87.99  E-value=1.9  Score=41.36  Aligned_cols=88  Identities=11%  Similarity=0.028  Sum_probs=59.4

Q ss_pred             cCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC--
Q psy9602         126 APIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP--  203 (239)
Q Consensus       126 ~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~--  203 (239)
                      .|+.++.|.++.|....-.... .+.+..+++.+++ ++|||+.=+=.+-.++++    |..+|||+|++.-|+.+..  
T Consensus       248 ~Gvd~I~VS~HGGrq~~~~~a~-~~~L~ei~~av~~-~i~vi~dGGIr~g~Dv~K----aLalGAd~V~igR~~l~~la~  321 (367)
T TIGR02708       248 AGASGIWVTNHGGRQLDGGPAA-FDSLQEVAEAVDK-RVPIVFDSGVRRGQHVFK----ALASGADLVALGRPVIYGLAL  321 (367)
T ss_pred             cCcCEEEECCcCccCCCCCCcH-HHHHHHHHHHhCC-CCcEEeeCCcCCHHHHHH----HHHcCCCEEEEcHHHHHHHHh
Confidence            3455678999998655433333 3345556677777 899998655555555543    3348999999999986652  


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy9602         204 ASVEDLVDYLRDVGEA  219 (239)
Q Consensus       204 ~s~e~iv~yf~~Vaea  219 (239)
                      ..++++..+++.+.+.
T Consensus       322 ~G~~gv~~~l~~l~~E  337 (367)
T TIGR02708       322 GGSQGARQVFEYLNKE  337 (367)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            2788888888766544

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=87.95  E-value=1.9  Score=38.12  Aligned_cols=51  Identities=18%  Similarity=0.319  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         176 QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       176 ~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      ++..++++.+.+.|+|+++|---.  .- +++.+.+..+.+-+.+ ++||+++  |+
T Consensus        11 e~~~~ia~~v~~~gtDaI~VGGS~--gv-t~~~~~~~v~~ik~~~-~lPvilf--p~   61 (205)
T TIGR01769        11 DEIEKIAKNAKDAGTDAIMVGGSL--GI-VESNLDQTVKKIKKIT-NLPVILF--PG   61 (205)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCcC--CC-CHHHHHHHHHHHHhhc-CCCEEEE--CC
Confidence            566778889999999999998542  23 7799999999999888 9999995  54

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=87.88  E-value=2.6  Score=38.94  Aligned_cols=91  Identities=18%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec--CC-CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI--GG-TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV--g~-~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      +-+..|-+..-+.+.-.++++.+++.++   +||-+-+  +- .+.++.+++++..+++|++++.|-+=.--...+...=
T Consensus        95 ~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~  171 (309)
T PF01207_consen   95 TKGGAGAALLKDPDLLAEIVKAVRKAVP---IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPAD  171 (309)
T ss_dssp             HHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---
T ss_pred             hcCCcChhhhcChHHhhHHHHhhhcccc---cceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccc
Confidence            4467888888899999999999999874   5776643  33 3678899999999999999999987321111122556


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      .+++..|.++. ++||+.
T Consensus       172 w~~i~~i~~~~-~ipvi~  188 (309)
T PF01207_consen  172 WEAIAEIKEAL-PIPVIA  188 (309)
T ss_dssp             HHHHHHCHHC--TSEEEE
T ss_pred             hHHHHHHhhcc-cceeEE
Confidence            77888999998 688764

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=87.84  E-value=2.6  Score=39.27  Aligned_cols=84  Identities=20%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             ccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCC-CCHHHHHHHHHHHHhCCCCEEEECCCC---CCCCCCHHHHH
Q psy9602         137 TGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGG-TCFQEVVELAKHAESLNVHAVLCLPEL---FFTPASVEDLV  210 (239)
Q Consensus       137 tGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~-~St~eAIelar~A~~aGAdaVlV~PP~---y~~~~s~e~iv  210 (239)
                      .|-...-..+.-.++++.+++.++   +||.+  ..+. .+..+.+++++.++++|+|++.+.+=.   .+..   ..-.
T Consensus       110 ~Gs~ll~~p~~~~eiv~av~~a~d---~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G---~a~~  183 (321)
T PRK10415        110 AGSALLQYPDLVKSILTEVVNAVD---VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG---EAEY  183 (321)
T ss_pred             cccHHhcCHHHHHHHHHHHHHhcC---CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCC---CcCh
Confidence            355556667778888888888763   46554  3332 344589999999999999999987522   1211   1235


Q ss_pred             HHHHHHHhhCCCCcEEE
Q psy9602         211 DYLRDVGEAAPATPLFY  227 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiL  227 (239)
                      ++++.|.+++ ++||+.
T Consensus       184 ~~i~~ik~~~-~iPVI~  199 (321)
T PRK10415        184 DSIRAVKQKV-SIPVIA  199 (321)
T ss_pred             HHHHHHHHhc-CCcEEE
Confidence            7888999988 899764

>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs

Probab=87.69  E-value=7.4  Score=34.42  Aligned_cols=77  Identities=16%  Similarity=0.095  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      +..+++-+.+.+......+++ +.+..+.+...++.+.+.+.++|++++.++      ..+.+...++.+.+ . ++|++
T Consensus        14 ~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~------~~~~~~~~~~~~~~-~-~iPvV   85 (298)
T cd06302          14 FNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN------DPDALEPVLKKARE-A-GIKVV   85 (298)
T ss_pred             HHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC------CHHHHHHHHHHHHH-C-CCeEE
Confidence            334444444433332466665 566678888889999999999999999853      22445566666654 4 79999


Q ss_pred             EEeCCC
Q psy9602         227 YYHIPM  232 (239)
Q Consensus       227 LYN~P~  232 (239)
                      ++|.+.
T Consensus        86 ~v~~~~   91 (298)
T cd06302          86 THDSDV   91 (298)
T ss_pred             EEcCCC
Confidence            999753

Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=87.59  E-value=4.1  Score=35.19  Aligned_cols=55  Identities=18%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         173 TCFQEVVELAKHAESLNVHAVLCLPELFF-TPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       173 ~St~eAIelar~A~~aGAdaVlV~PP~y~-~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++.-+..++.|.+.|||.+-+..++.. +....+.+.+...++.+.+.++|+.+
T Consensus        66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv  121 (203)
T cd00959          66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV  121 (203)
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence            55777788899999999999999988753 22166779999999999985677644

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK15408 autoinducer 2-binding protein lsrB; Provisional

Probab=87.54  E-value=5.8  Score=36.72  Aligned_cols=62  Identities=13%  Similarity=0.127  Sum_probs=47.9

Q ss_pred             CceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      .+.++. +-+..+....++.++.+.+.|+|++++.|+      +.+.+...++.+.++  ++||+.+|.+.
T Consensus        53 G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~------d~~al~~~l~~a~~~--gIpVV~~d~~~  115 (336)
T PRK15408         53 GVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV------SPDGLCPALKRAMQR--GVKVLTWDSDT  115 (336)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC------CHHHHHHHHHHHHHC--CCeEEEeCCCC
Confidence            456666 555667778889999999999999999752      446677777777665  79999999864

>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria

Probab=87.47  E-value=3  Score=40.66  Aligned_cols=81  Identities=9%  Similarity=-0.030  Sum_probs=56.8

Q ss_pred             ccCCcCCCHHHHHHHHHHHHHHh----cCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHH
Q psy9602         137 TGEGVSMTTAERKLNLEAWMTEA----KTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDY  212 (239)
Q Consensus       137 tGE~~sLT~eER~~li~~vve~~----~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~y  212 (239)
                      .+.-.+...+||...+..+++.+    +. ++-..+++++. +++.++.++.+++.|++++|+.+-.+- .   ..    
T Consensus       182 l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~G-~---~~----  251 (406)
T cd08207         182 LANPPYSPLDERVRAVMRVINDHAQRTGR-KVMYAFNITDD-IDEMRRNHDLVVEAGGTCVMVSLNSVG-L---SG----  251 (406)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHhhCC-cceEEEecCCC-HHHHHHHHHHHHHhCCCeEEEeccccc-h---HH----
Confidence            34556778899987776666543    33 45567799876 999999999999999999999864431 1   11    


Q ss_pred             HHHHHhhCCCCcEEEE
Q psy9602         213 LRDVGEAAPATPLFYY  228 (239)
Q Consensus       213 f~~VaeatpdLPIiLY  228 (239)
                      +..+++.. ++||..+
T Consensus       252 l~~l~~~~-~l~IhaH  266 (406)
T cd08207         252 LAALRRHS-QLPIHGH  266 (406)
T ss_pred             HHHHHhcC-CceEEEC
Confidence            44455555 7777643

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>TIGR00510 lipA lipoate synthase

Probab=87.42  E-value=5.1  Score=37.37  Aligned_cols=76  Identities=20%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC---------CCHHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP---------ASVEDLV  210 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~---------~s~e~iv  210 (239)
                      .-+.+++.++++.+.+...|.  +.-+|+|. +++-++.++..+...++|+|.+.+.+  |++|         .-..+.+
T Consensus       187 ~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igq--Yl~p~~~~~~v~~~~~p~~f  263 (302)
T TIGR00510       187 GATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQ--YLRPSRRHLPVKRYVSPEEF  263 (302)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeec--ccCCCCCCCccccCCCHHHH
Confidence            458899999999999975431  45689999 88999999999999999999999875  3333         1235667


Q ss_pred             HHHHHHHhhC
Q psy9602         211 DYLRDVGEAA  220 (239)
Q Consensus       211 ~yf~~Vaeat  220 (239)
                      ++|+.++...
T Consensus       264 ~~~~~~a~~~  273 (302)
T TIGR00510       264 DYYRSVALEM  273 (302)
T ss_pred             HHHHHHHHHc
Confidence            8888888876

The family shows strong sequence conservation.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=87.34  E-value=8.9  Score=37.71  Aligned_cols=97  Identities=15%  Similarity=0.112  Sum_probs=64.3

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecC---CCCHHHHHHHHHHHHhCCCCEEE
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIG---GTCFQEVVELAKHAESLNVHAVL  194 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg---~~St~eAIelar~A~~aGAdaVl  194 (239)
                      ++...+.|.+.+ ++-+..+...         ++.+++.++.....+.+  +..   -.+.+-.+++++.+.++|||.+.
T Consensus       102 v~~A~~~Gvd~irif~~lnd~~n---------~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~  172 (448)
T PRK12331        102 VQKSVENGIDIIRIFDALNDVRN---------LETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSIC  172 (448)
T ss_pred             HHHHHHCCCCEEEEEEecCcHHH---------HHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            344566666654 6666666531         22233333321233322  221   23568889999999999999999


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      +.......  ++.++.+.++.|-++. ++||-++-
T Consensus       173 i~Dt~G~l--~P~~v~~lv~alk~~~-~~pi~~H~  204 (448)
T PRK12331        173 IKDMAGIL--TPYVAYELVKRIKEAV-TVPLEVHT  204 (448)
T ss_pred             EcCCCCCC--CHHHHHHHHHHHHHhc-CCeEEEEe
Confidence            98766543  7899999999999998 69987753

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=87.31  E-value=5.4  Score=36.02  Aligned_cols=76  Identities=17%  Similarity=0.079  Sum_probs=58.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEec--C-CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI--G-GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVG  217 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV--g-~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va  217 (239)
                      ..+|.+|-...++.+.+.+.  ..||++-.  + ..+..++++.++...++||++|-+-.        +.++.+-.+.+.
T Consensus        53 ~~vtl~em~~~~~~I~r~~~--~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED--------~~~~~~~i~ai~  122 (240)
T cd06556          53 LPYPVNDVPYHVRAVRRGAP--LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEG--------GEWHIETLQMLT  122 (240)
T ss_pred             CCcCHHHHHHHHHHHHhhCC--CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcC--------cHHHHHHHHHHH
Confidence            46899999999999998774  47999944  2 23669999999999999999999873        345666777777


Q ss_pred             hhCCCCcEEEE
Q psy9602         218 EAAPATPLFYY  228 (239)
Q Consensus       218 eatpdLPIiLY  228 (239)
                      ++  .+||+-.
T Consensus       123 ~a--~i~ViaR  131 (240)
T cd06556         123 AA--AVPVIAH  131 (240)
T ss_pred             Hc--CCeEEEE
Confidence            65  4777643

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=87.24  E-value=4.8  Score=36.76  Aligned_cols=73  Identities=16%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCce-EEEec----CCCCHHHHHHHHHHHHh-CCCCEEEECCCCCCCCCCHHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFT-VMVQI----GGTCFQEVVELAKHAES-LNVHAVLCLPELFFTPASVEDLVDYLR  214 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvp-VIaGV----g~~St~eAIelar~A~~-aGAdaVlV~PP~y~~~~s~e~iv~yf~  214 (239)
                      ..+|.+|-...++.++..++   .| |++-.    ..+|.+++++.+....+ +||++|-+-        +.+++.+..+
T Consensus        53 ~~vtl~em~~~~~~V~r~~~---~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiE--------d~~~~~~~I~  121 (254)
T cd06557          53 LPVTLDEMIYHTRAVRRGAP---RALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLE--------GGAEVAETIR  121 (254)
T ss_pred             CCcCHHHHHHHHHHHHhcCC---CCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEc--------CcHHHHHHHH
Confidence            47899999999999998774   47 76633    34679999999766666 999999987        3468889999


Q ss_pred             HHHhhCCCCcEE
Q psy9602         215 DVGEAAPATPLF  226 (239)
Q Consensus       215 ~VaeatpdLPIi  226 (239)
                      .+.++  ++|++
T Consensus       122 al~~a--gipV~  131 (254)
T cd06557         122 ALVDA--GIPVM  131 (254)
T ss_pred             HHHHc--CCCee
Confidence            99976  69988

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein

Probab=87.24  E-value=7.6  Score=34.18  Aligned_cols=77  Identities=14%  Similarity=0.120  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhcCCC-ceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602         148 RKLNLEAWMTEAKTHG-FTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL  225 (239)
Q Consensus       148 R~~li~~vve~~~G~r-vpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI  225 (239)
                      +..+++-+.+.+.... ..++. +....+....++..+.+.+.++|++++.|.      +.+.+...++.+.++  ++|+
T Consensus        13 ~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~------~~~~~~~~l~~~~~~--giPv   84 (302)
T TIGR02637        13 FEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN------DPDALVPALKKAMKR--GIKV   84 (302)
T ss_pred             HHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC------ChHHHHHHHHHHHHC--CCEE
Confidence            4445554444443322 33443 345667888889999999999999999863      235556667776664  7999


Q ss_pred             EEEeCCC
Q psy9602         226 FYYHIPM  232 (239)
Q Consensus       226 iLYN~P~  232 (239)
                      ++++.+.
T Consensus        85 V~~~~~~   91 (302)
T TIGR02637        85 VTWDSGV   91 (302)
T ss_pred             EEeCCCC
Confidence            9998753

This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.

>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=87.22  E-value=7.4  Score=33.09  Aligned_cols=62  Identities=15%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      ++-+++..+..+.+..++..+.+...++|++++.+.. .     +...+..+.+.+ . ++|++++|.+.
T Consensus        30 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-~-----~~~~~~l~~~~~-~-~iPvV~~~~~~   91 (275)
T cd06317          30 GVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTD-G-----QAYIPGLRKAKQ-A-GIPVVITNSNI   91 (275)
T ss_pred             CCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCC-c-----cccHHHHHHHHH-C-CCcEEEeCCCC
Confidence            4566666667788888899999999999999997632 1     223334455544 4 79999999864

Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=87.14  E-value=8.8  Score=33.62  Aligned_cols=81  Identities=16%  Similarity=0.147  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT  223 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL  223 (239)
                      +..=+..+++-+.+.+...+..+++..+..+.+...+.++.+.+.++|++++.|..      .+.....++.+.+ . ++
T Consensus        10 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~------~~~~~~~l~~l~~-~-~i   81 (288)
T cd01538          10 TEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVD------GEALASAVEKAAD-A-GI   81 (288)
T ss_pred             CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC------hhhHHHHHHHHHH-C-CC
Confidence            33444556665555554435677776666777888888888899999999998632      2334455666555 4 79


Q ss_pred             cEEEEeCCC
Q psy9602         224 PLFYYHIPM  232 (239)
Q Consensus       224 PIiLYN~P~  232 (239)
                      ||++.|.+.
T Consensus        82 pvV~~~~~~   90 (288)
T cd01538          82 PVIAYDRLI   90 (288)
T ss_pred             CEEEECCCC
Confidence            999998753

Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=87.13  E-value=2  Score=41.15  Aligned_cols=75  Identities=8%  Similarity=0.065  Sum_probs=56.8

Q ss_pred             CCCHHHHHHHHHHHHHHh-cCCCceEEE-ecCCCCHHHHHHHHHHH---HhCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEA-KTHGFTVMV-QIGGTCFQEVVELAKHA---ESLNVHAVLCLPELFFTPASVEDLVDYLRDV  216 (239)
Q Consensus       142 sLT~eER~~li~~vve~~-~G~rvpVIa-GVg~~St~eAIelar~A---~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~V  216 (239)
                      .++.+.-.+.++.+++.+ .| ++||++ |=...+.++.++.++.|   .+.|+.++.+-=-.|..+  .++-++..++|
T Consensus       260 ~~~~~~~~~~~~~~V~ac~ag-~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~--~~ea~~~~~~i  336 (348)
T PRK09250        260 KLTSDHPIDLVRYQVANCYMG-RRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRP--MAEGVKLLNAI  336 (348)
T ss_pred             cccccchHHHHHHHHHhhccC-CceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCC--cHHHHHHHHHH
Confidence            345556667778888876 67 789776 44455889999999999   999999999998777655  55666777777


Q ss_pred             Hhh
Q psy9602         217 GEA  219 (239)
Q Consensus       217 aea  219 (239)
                      .+-
T Consensus       337 ~~i  339 (348)
T PRK09250        337 QDV  339 (348)
T ss_pred             HHH
Confidence            654

>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I

Probab=87.04  E-value=3.3  Score=40.85  Aligned_cols=97  Identities=11%  Similarity=0.012  Sum_probs=63.0

Q ss_pred             hhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHHhc----CCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602         124 RMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTEAK----THGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPE  198 (239)
Q Consensus       124 ~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~~~----G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP  198 (239)
                      ...||.+++=-= ..+.-.+-..+||...+..+++.+.    . +.-..+++++.++++.++.++.+++.|++++|+..-
T Consensus       170 ~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~-~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~~~  248 (450)
T cd08212         170 CLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGE-VKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHDLL  248 (450)
T ss_pred             HHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceeeccccCCCHHHHHHHHHHHHHhCCCeEeeecc
Confidence            344554544111 2345567778999888777766533    3 444556999999999999999999999999999832


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         199 LFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       199 ~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .  .. +   .+...+..+... ++||..+
T Consensus       249 ~--G~-~---~l~~l~~~a~~~-~l~IhaH  271 (450)
T cd08212         249 T--GF-T---AIQSLAKWCRDN-GMLLHLH  271 (450)
T ss_pred             c--cc-c---hHHHHHHHhhhc-CceEEec
Confidence            2  22 1   244444444455 6776554

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=86.96  E-value=1.6  Score=39.99  Aligned_cols=66  Identities=21%  Similarity=0.315  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEecC------------------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHH
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQIG------------------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVE  207 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGVg------------------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e  207 (239)
                      +|..+.++.+++.    ++||+.+++                  ....+++++.++..+++||+++.+--+    +   +
T Consensus       117 ~~~~~~I~al~~a----gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----~---~  185 (264)
T PRK00311        117 EEVAETIKRLVER----GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV----P---A  185 (264)
T ss_pred             HHHHHHHHHHHHC----CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C---H
Confidence            3556666666643    688873332                  223568999999999999999998743    2   1


Q ss_pred             HHHHHHHHHHhhCCCCcEE
Q psy9602         208 DLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       208 ~iv~yf~~VaeatpdLPIi  226 (239)
                         +-.+.|.++. ++|+|
T Consensus       186 ---~~~~~i~~~l-~iP~i  200 (264)
T PRK00311        186 ---ELAKEITEAL-SIPTI  200 (264)
T ss_pred             ---HHHHHHHHhC-CCCEE
Confidence               2346677777 68886

>TIGR02317 prpB methylisocitrate lyase

Probab=86.93  E-value=9  Score=35.55  Aligned_cols=83  Identities=16%  Similarity=0.078  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCC-------CCC-CCC-CHHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPE-------LFF-TPA-SVEDLV  210 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP-------~y~-~~~-s~e~iv  210 (239)
                      .||.+|..+.++.+...+   .+||++=+  |-.+..++.+.++...++|+.++.+---       |+- +.. +.++..
T Consensus        55 ~lt~~e~~~~~~~I~~~~---~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~  131 (285)
T TIGR02317        55 ITTLDEVAEDARRITRVT---DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMV  131 (285)
T ss_pred             CCCHHHHHHHHHHHHhcc---CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHH
Confidence            689999999999999887   58999943  3344889999999999999999999652       111 112 788999


Q ss_pred             HHHHHHHhhCCCCcEEE
Q psy9602         211 DYLRDVGEAAPATPLFY  227 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiL  227 (239)
                      ...++..++..+.+++|
T Consensus       132 ~kI~Aa~~a~~~~d~~I  148 (285)
T TIGR02317       132 DKIAAAVDAKRDEDFVI  148 (285)
T ss_pred             HHHHHHHHhccCCCEEE
Confidence            99999988764445554

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=86.90  E-value=17  Score=31.29  Aligned_cols=109  Identities=14%  Similarity=-0.015  Sum_probs=63.9

Q ss_pred             HHhhHHhhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602         117 LLVGITLRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC  195 (239)
Q Consensus       117 l~~~v~~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV  195 (239)
                      ....++..++.|.+ +-+.-..|-..+=..++-.+-+..+++.+.+..+.||+..+..+.++....++.|.++|||.+=.
T Consensus        71 k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKT  150 (203)
T cd00959          71 KVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKT  150 (203)
T ss_pred             HHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEc
Confidence            33446666766654 32322333111112244555566666766542344577888888888999999999999999888


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         196 LPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       196 ~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      ..-+.....+.+.+..+-+.+.  . .+||.+-
T Consensus       151 sTG~~~~~at~~~v~~~~~~~~--~-~v~ik~a  180 (203)
T cd00959         151 STGFGPGGATVEDVKLMKEAVG--G-RVGVKAA  180 (203)
T ss_pred             CCCCCCCCCCHHHHHHHHHHhC--C-CceEEEe
Confidence            7433322225565555444444  3 4676653

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=86.90  E-value=4.3  Score=37.13  Aligned_cols=56  Identities=13%  Similarity=0.107  Sum_probs=42.7

Q ss_pred             cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602         138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP  197 (239)
Q Consensus       138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P  197 (239)
                      |....-..+.-.++++.+.+.+   ++||++=+.. +..+..++++.++++|+|++.+..
T Consensus       146 G~~l~~~~~~~~~iv~~v~~~~---~~Pv~vKl~~-~~~~~~~~a~~~~~~Gadgi~~~N  201 (299)
T cd02940         146 GAAVGQDPELVEEICRWVREAV---KIPVIAKLTP-NITDIREIARAAKEGGADGVSAIN  201 (299)
T ss_pred             chhhccCHHHHHHHHHHHHHhc---CCCeEEECCC-CchhHHHHHHHHHHcCCCEEEEec
Confidence            4444456677777888877765   5799998765 455888999999999999998653

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PLN02591 tryptophan synthase

Probab=86.77  E-value=2.3  Score=38.63  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC----CH--
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA----SV--  206 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~----s~--  206 (239)
                      ..|.||+-..+. ++-.+.++.+.+..   ++||++|.|-.+.+++-    .+.+.|||+++|-.-.. +..    +.  
T Consensus       163 ~~GvTG~~~~~~-~~~~~~i~~vk~~~---~~Pv~vGFGI~~~e~v~----~~~~~GADGvIVGSalV-k~i~~~~~~~~  233 (250)
T PLN02591        163 STGVTGARASVS-GRVESLLQELKEVT---DKPVAVGFGISKPEHAK----QIAGWGADGVIVGSAMV-KALGEAKSPEE  233 (250)
T ss_pred             CCCCcCCCcCCc-hhHHHHHHHHHhcC---CCceEEeCCCCCHHHHH----HHHhcCCCEEEECHHHH-HhhhhccChhH
Confidence            489999987765 55677788888753   68999999987776654    46778999999986441 110    11  


Q ss_pred             --HHHHHHHHHHHhh
Q psy9602         207 --EDLVDYLRDVGEA  219 (239)
Q Consensus       207 --e~iv~yf~~Vaea  219 (239)
                        +.+.+|.+.+..+
T Consensus       234 ~~~~~~~~~~~l~~~  248 (250)
T PLN02591        234 GLKRLEKLAKSLKAA  248 (250)
T ss_pred             HHHHHHHHHHHHHhh
Confidence              4677777777553

>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems

Probab=86.76  E-value=8.5  Score=33.00  Aligned_cols=81  Identities=11%  Similarity=0.135  Sum_probs=53.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA  222 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd  222 (239)
                      ++..=..++++.+.+.+...+..+++.-+..+.+.-.+.++.+...++|++++.|..   .   +.....++.+.+ . +
T Consensus         9 ~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~---~---~~~~~~i~~~~~-~-~   80 (273)
T cd06309           9 AESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVV---E---TGWDPVLKEAKA-A-G   80 (273)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc---c---ccchHHHHHHHH-C-C
Confidence            344445566666666655435777776666678888888999999999999998633   1   112223344444 4 7


Q ss_pred             CcEEEEeCC
Q psy9602         223 TPLFYYHIP  231 (239)
Q Consensus       223 LPIiLYN~P  231 (239)
                      +|++++|..
T Consensus        81 iPvV~~~~~   89 (273)
T cd06309          81 IPVILVDRG   89 (273)
T ss_pred             CCEEEEecC
Confidence            999999964

Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=86.73  E-value=8  Score=34.64  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             CcCCCHHHHHHHHHHHHHHhcCCCceEEEe--cCCCCHHHHHHHHHHHHhCCCCEEEE----CCCC------CCCCCCHH
Q psy9602         140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQ--IGGTCFQEVVELAKHAESLNVHAVLC----LPEL------FFTPASVE  207 (239)
Q Consensus       140 ~~sLT~eER~~li~~vve~~~G~rvpVIaG--Vg~~St~eAIelar~A~~aGAdaVlV----~PP~------y~~~~s~e  207 (239)
                      ...+|.+|....++.+...+   .+||++-  .|..+..++.+.++...+.|++++.+    .|..      +... +.+
T Consensus        49 ~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~-~~e  124 (243)
T cd00377          49 GGLLTLDEVLAAVRRIARAV---DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLV-PIE  124 (243)
T ss_pred             CCcCCHHHHHHHHHHHHhhc---cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeec-CHH
Confidence            34678899999999999887   5799883  34447789999999999999999999    2111      1122 789


Q ss_pred             HHHHHHHHHHhhC
Q psy9602         208 DLVDYLRDVGEAA  220 (239)
Q Consensus       208 ~iv~yf~~Vaeat  220 (239)
                      +..+-.+++.++.
T Consensus       125 e~~~ki~aa~~a~  137 (243)
T cd00377         125 EFVAKIKAARDAR  137 (243)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998887

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=86.63  E-value=7.1  Score=36.37  Aligned_cols=81  Identities=11%  Similarity=0.165  Sum_probs=54.4

Q ss_pred             cCCCHHHH-HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCH-------------
Q psy9602         141 VSMTTAER-KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASV-------------  206 (239)
Q Consensus       141 ~sLT~eER-~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~-------------  206 (239)
                      ...+.+++ .++++.+.+.+   ++||++=++.. ..+..+.++.++++|+|++.+..-.+-...+.             
T Consensus       143 ~g~~~~~~~~eiv~~v~~~~---~iPv~vKl~p~-~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG  218 (325)
T cd04739         143 SGAEVEQRYLDILRAVKSAV---TIPVAVKLSPF-FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS  218 (325)
T ss_pred             ccchHHHHHHHHHHHHHhcc---CCCEEEEcCCC-ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC
Confidence            34444444 46777777665   57999987653 45789999999999999999977542111010             


Q ss_pred             ----HHHHHHHHHHHhhCCCCcEE
Q psy9602         207 ----EDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       207 ----e~iv~yf~~VaeatpdLPIi  226 (239)
                          .-..++...+.... ++||+
T Consensus       219 ~~~~~~al~~v~~v~~~~-~ipIi  241 (325)
T cd04739         219 PAEIRLPLRWIAILSGRV-KASLA  241 (325)
T ss_pred             ccchhHHHHHHHHHHccc-CCCEE
Confidence                12356677788777 78887

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=86.50  E-value=4.9  Score=37.74  Aligned_cols=84  Identities=13%  Similarity=0.077  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHHhcC-------CCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--CHH
Q psy9602         144 TTAERKLNLEAWMTEAKT-------HGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--SVE  207 (239)
Q Consensus       144 T~eER~~li~~vve~~~G-------~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--s~e  207 (239)
                      |.+-|.+++..+++.+..       .+++|.+=++       +.+.++.+++++.+++.|+|.+-|....+....  ...
T Consensus       189 slenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~  268 (353)
T cd04735         189 SLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRD  268 (353)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCc
Confidence            356666666555554432       1345544333       346799999999999999999999875442220  111


Q ss_pred             HHHHHHHHHHhhC-CCCcEEE
Q psy9602         208 DLVDYLRDVGEAA-PATPLFY  227 (239)
Q Consensus       208 ~iv~yf~~Vaeat-pdLPIiL  227 (239)
                      .-..+.+.+.+.. +++||+.
T Consensus       269 ~~~~~~~~ik~~~~~~iPVi~  289 (353)
T cd04735         269 DNQTIMELVKERIAGRLPLIA  289 (353)
T ss_pred             chHHHHHHHHHHhCCCCCEEE
Confidence            1233444454443 2688775

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=86.47  E-value=7.5  Score=33.98  Aligned_cols=74  Identities=14%  Similarity=0.077  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCCCceEE-EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         150 LNLEAWMTEAKTHGFTVM-VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       150 ~li~~vve~~~G~rvpVI-aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      ++++.+.+.+...+.-++ +..+..+.+..++..+.+...++|++++.|.      +.+...+.++.+.+ . ++|++++
T Consensus        16 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~------~~~~~~~~i~~~~~-~-~iPvV~~   87 (294)
T cd06316          16 AQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPV------DPVSTAAAYKKVAE-A-GIKLVFM   87 (294)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCC------CchhhhHHHHHHHH-c-CCcEEEe
Confidence            344444343333245555 4566667887888888888899999998742      11223445666655 4 7999999


Q ss_pred             eCC
Q psy9602         229 HIP  231 (239)
Q Consensus       229 N~P  231 (239)
                      |.+
T Consensus        88 ~~~   90 (294)
T cd06316          88 DNV   90 (294)
T ss_pred             cCC
Confidence            985

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=86.46  E-value=9.5  Score=32.58  Aligned_cols=77  Identities=12%  Similarity=-0.000  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhcC--CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602         147 ERKLNLEAWMTEAKT--HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP  224 (239)
Q Consensus       147 ER~~li~~vve~~~G--~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP  224 (239)
                      =+.++++.+.+.+..  .+.-++...+..+.+.-.+..+.+.+.++|++++.|..      .+......+.+.+ . ++|
T Consensus        13 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~------~~~~~~~i~~~~~-~-~ip   84 (271)
T cd06321          13 FFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVD------SKGIAPAVKRAQA-A-GIV   84 (271)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCC------hhHhHHHHHHHHH-C-CCe
Confidence            334455444444333  34556555556666666777777888888888887522      1222334445444 4 688


Q ss_pred             EEEEeCC
Q psy9602         225 LFYYHIP  231 (239)
Q Consensus       225 IiLYN~P  231 (239)
                      ++++|.+
T Consensus        85 vv~~~~~   91 (271)
T cd06321          85 VVAVDVA   91 (271)
T ss_pred             EEEecCC
Confidence            8888865

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=86.43  E-value=2.5  Score=40.41  Aligned_cols=81  Identities=15%  Similarity=0.184  Sum_probs=58.9

Q ss_pred             CCHHHHHHHHHHHHHHh-------cCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q psy9602         143 MTTAERKLNLEAWMTEA-------KTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRD  215 (239)
Q Consensus       143 LT~eER~~li~~vve~~-------~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~  215 (239)
                      ++.+|+.+.++.+....       ++ +..|-+.|+.  .++..+.++...++|+|.+++-..+.+    .+.+++..+.
T Consensus        70 ~~~e~q~~~v~~vK~~~~~a~~d~~~-~l~V~aavg~--~~~~~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~  142 (352)
T PF00478_consen   70 MSIEEQAEEVKKVKRYYPNASKDEKG-RLLVAAAVGT--RDDDFERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKK  142 (352)
T ss_dssp             SCHHHHHHHHHHHHTHHTTHHBHTTS-CBCEEEEEES--STCHHHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHH
T ss_pred             CCHHHHHHHHhhhccccccccccccc-cceEEEEecC--CHHHHHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHH
Confidence            78899999999887542       33 4555554443  335677888888899999999877753    3667788888


Q ss_pred             HHhhCCCCcEEEEeC
Q psy9602         216 VGEAAPATPLFYYHI  230 (239)
Q Consensus       216 VaeatpdLPIiLYN~  230 (239)
                      |-+..|++|||.=|.
T Consensus       143 ik~~~~~~~viaGNV  157 (352)
T PF00478_consen  143 IKKKFPDVPVIAGNV  157 (352)
T ss_dssp             HHHHSTTSEEEEEEE
T ss_pred             HHHhCCCceEEeccc
Confidence            889998899998775

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=86.28  E-value=7.8  Score=34.89  Aligned_cols=85  Identities=14%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CC----------CCCCCCHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--EL----------FFTPASVEDL  209 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~----------y~~~~s~e~i  209 (239)
                      .+..|+-.+.++.-...+.. +.|+++++++.+.++.++.++.+++ ++|++=+-.  |.          +... +++-+
T Consensus        47 ~~~~e~~~~~i~~e~~~~~~-~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~-dp~~l  123 (231)
T TIGR00736        47 SFNLEEFNSYIIEQIKKAES-RALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLK-NKELL  123 (231)
T ss_pred             CcCcccHHHHHHHHHHHHhh-cCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcC-CHHHH
Confidence            35555566666666666665 7899999999999999999999977 899988753  22          1222 77888


Q ss_pred             HHHHHHHHhhCCCCcEEEEeCC
Q psy9602         210 VDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiLYN~P  231 (239)
                      .+..+++.+ . +.||.+==-|
T Consensus       124 ~~iv~av~~-~-~~PVsvKiR~  143 (231)
T TIGR00736       124 KEFLTKMKE-L-NKPIFVKIRG  143 (231)
T ss_pred             HHHHHHHHc-C-CCcEEEEeCC
Confidence            899999984 5 7888775444

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=86.26  E-value=3.9  Score=35.60  Aligned_cols=51  Identities=20%  Similarity=0.152  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         175 FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       175 t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..+.+++++.+++.|+|.+++..-.--.. .+.--+++++.+.+.+ ++||+.
T Consensus       152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~-~~g~~~~~~~~i~~~~-~ipvia  202 (232)
T TIGR03572       152 GRDPVEWAREAEQLGAGEILLNSIDRDGT-MKGYDLELIKTVSDAV-SIPVIA  202 (232)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEeCCCccCC-cCCCCHHHHHHHHhhC-CCCEEE
Confidence            34578999999999999999997221111 1112378889999988 899875

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=86.25  E-value=3  Score=38.20  Aligned_cols=89  Identities=13%  Similarity=0.101  Sum_probs=56.4

Q ss_pred             hcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q psy9602         125 MAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP  203 (239)
Q Consensus       125 ~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~  203 (239)
                      .+.|. ++.+.|+.|....-.. --.+++..+.+.+.+ ++|||+.=+=.+-.++++..    .+|||+|++.-|+.+..
T Consensus       190 ~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal----~lGAd~V~ig~~~l~~~  263 (299)
T cd02809         190 VDAGADGIVVSNHGGRQLDGAP-ATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKAL----ALGADAVLIGRPFLYGL  263 (299)
T ss_pred             HHCCCCEEEEcCCCCCCCCCCc-CHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHH----HcCCCEEEEcHHHHHHH
Confidence            44444 5678787765322111 124455556666665 69998755555566655544    48999999999986543


Q ss_pred             C--CHHHHHHHHHHHHhh
Q psy9602         204 A--SVEDLVDYLRDVGEA  219 (239)
Q Consensus       204 ~--s~e~iv~yf~~Vaea  219 (239)
                      .  .++.+.++++.+.+.
T Consensus       264 ~~~g~~~v~~~i~~l~~e  281 (299)
T cd02809         264 AAGGEAGVAHVLEILRDE  281 (299)
T ss_pred             HhcCHHHHHHHHHHHHHH
Confidence            1  567777777776664

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=86.21  E-value=6.9  Score=34.36  Aligned_cols=102  Identities=21%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             hhHHhhhcCCCC-E--EEe-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHH---------HHHHHHHH
Q psy9602         119 VGITLRMAPIID-Q--MVN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQE---------VVELAKHA  185 (239)
Q Consensus       119 ~~v~~~~~gg~g-l--vV~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~e---------AIelar~A  185 (239)
                      ..++..++.|.. +  +++ |..+...   .++-.+.+..+++.+.+..+|+|+= .-..-.+         ....++.|
T Consensus        80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~---~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria  155 (236)
T PF01791_consen   80 AEVEEAIRLGADEVDVVINYGALGSGN---EDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIA  155 (236)
T ss_dssp             HHHHHHHHTT-SEEEEEEEHHHHHTTH---HHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCceeeeecccccccccc---HHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHH
Confidence            345666665553 3  222 2223322   5666777777777776657999987 4444444         68888999


Q ss_pred             HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc----EEE
Q psy9602         186 ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP----LFY  227 (239)
Q Consensus       186 ~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP----IiL  227 (239)
                      .++|||.+=...|.. .. ...+-.+-|+.+.+.+ +.|    |.+
T Consensus       156 ~e~GaD~vKt~tg~~-~~-~t~~~~~~~~~~~~~~-~~p~~~~Vk~  198 (236)
T PF01791_consen  156 AELGADFVKTSTGKP-VG-ATPEDVELMRKAVEAA-PVPGKVGVKA  198 (236)
T ss_dssp             HHTT-SEEEEE-SSS-SC-SHHHHHHHHHHHHHTH-SSTTTSEEEE
T ss_pred             HHhCCCEEEecCCcc-cc-ccHHHHHHHHHHHHhc-CCCcceEEEE
Confidence            999999999999955 44 5555566678888877 577    665

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>cd03307 Mta_CmuA_like MtaA_CmuA_like family

Probab=86.05  E-value=6.2  Score=36.21  Aligned_cols=58  Identities=12%  Similarity=0.007  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CHHHHH----HHHHHHHhhCCCCcEEEEeCC
Q psy9602         174 CFQEVVELAKHAESLNVHAVLCLPELFFTPA-SVEDLV----DYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       174 St~eAIelar~A~~aGAdaVlV~PP~y~~~~-s~e~iv----~yf~~VaeatpdLPIiLYN~P  231 (239)
                      -++-.+++++...++|||++.+..|...... +++...    -|++.|.+...+.|+++|.+-
T Consensus       169 it~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG  231 (326)
T cd03307         169 LTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHICG  231 (326)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence            3555678888888899999999888643222 666665    556888888722488887654

MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=85.81  E-value=9.7  Score=35.39  Aligned_cols=87  Identities=15%  Similarity=0.133  Sum_probs=58.5

Q ss_pred             cCCCHHHHHHHHHHHHHHhc--CCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCC----------------C
Q psy9602         141 VSMTTAERKLNLEAWMTEAK--THGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLPELF----------------F  201 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y----------------~  201 (239)
                      ..-..+.-.++++.+.+.++  +.++||++=++.. +.++..++++.++++|+|++.+.....                +
T Consensus       178 ~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~  257 (327)
T cd04738         178 DLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGL  257 (327)
T ss_pred             cccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCcc
Confidence            34455666788888888874  1148999988743 335788999999999999999876321                1


Q ss_pred             CC-CCHHHHHHHHHHHHhhCC-CCcEEE
Q psy9602         202 TP-ASVEDLVDYLRDVGEAAP-ATPLFY  227 (239)
Q Consensus       202 ~~-~s~e~iv~yf~~Vaeatp-dLPIiL  227 (239)
                      .. .......++...+.+..+ ++||+-
T Consensus       258 sG~~~~~~~l~~v~~l~~~~~~~ipIi~  285 (327)
T cd04738         258 SGAPLKERSTEVLRELYKLTGGKIPIIG  285 (327)
T ss_pred             CChhhhHHHHHHHHHHHHHhCCCCcEEE
Confidence            10 011133677788887764 578773

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=85.71  E-value=5.6  Score=36.98  Aligned_cols=74  Identities=11%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCH-----------------HHHH
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASV-----------------EDLV  210 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~-----------------e~iv  210 (239)
                      ..++++.+.+.+   ++||++=.+. ...+..+.++.++++|+|+|.+..-.+....+.                 ....
T Consensus       153 ~~eil~~v~~~~---~iPV~vKl~p-~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al  228 (334)
T PRK07565        153 YLDILRAVKSAV---SIPVAVKLSP-YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPL  228 (334)
T ss_pred             HHHHHHHHHhcc---CCcEEEEeCC-CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHH
Confidence            446777777664   5899998765 345788999999999999999876543111011                 1234


Q ss_pred             HHHHHHHhhCCCCcEE
Q psy9602         211 DYLRDVGEAAPATPLF  226 (239)
Q Consensus       211 ~yf~~VaeatpdLPIi  226 (239)
                      ++...+.++. ++||+
T Consensus       229 ~~v~~~~~~~-~ipIi  243 (334)
T PRK07565        229 RWIAILSGRV-GADLA  243 (334)
T ss_pred             HHHHHHHhhc-CCCEE
Confidence            6677777777 78877

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=85.65  E-value=8.7  Score=35.25  Aligned_cols=83  Identities=18%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             cCCCCEE-Ee-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q psy9602         126 APIIDQM-VN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP  203 (239)
Q Consensus       126 ~gg~glv-V~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~  203 (239)
                      +-|+..+ ++ ...|-+..++..|   +++.+++..   ++|||++-+=.+.+++    ..|.++|||+|++-.-..-..
T Consensus       142 ~~G~~~vmPlg~pIGsg~Gi~~~~---~I~~I~e~~---~vpVI~egGI~tpeda----~~AmelGAdgVlV~SAIt~a~  211 (248)
T cd04728         142 DAGCAAVMPLGSPIGSGQGLLNPY---NLRIIIERA---DVPVIVDAGIGTPSDA----AQAMELGADAVLLNTAIAKAK  211 (248)
T ss_pred             HcCCCEeCCCCcCCCCCCCCCCHH---HHHHHHHhC---CCcEEEeCCCCCHHHH----HHHHHcCCCEEEEChHhcCCC
Confidence            3355544 32 3455556776644   444556652   5899998777666665    556779999999998766444


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy9602         204 ASVEDLVDYLRDVGEA  219 (239)
Q Consensus       204 ~s~e~iv~yf~~Vaea  219 (239)
                       ++..+-..|..-.++
T Consensus       212 -dP~~ma~af~~Av~a  226 (248)
T cd04728         212 -DPVAMARAFKLAVEA  226 (248)
T ss_pred             -CHHHHHHHHHHHHHH
Confidence             788888888876654

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PLN02433 uroporphyrinogen decarboxylase

Probab=85.57  E-value=9.9  Score=35.45  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH----HHHHhhC----CCCcEEEEeC
Q psy9602         174 CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL----RDVGEAA----PATPLFYYHI  230 (239)
Q Consensus       174 St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf----~~Vaeat----pdLPIiLYN~  230 (239)
                      .++..+++++...++||+.+.+.-|..... +++...+|.    +.|.++.    |+.|+++|.+
T Consensus       177 it~~~~~~~~~~ieaGa~~i~i~d~~~~~l-sp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c  240 (345)
T PLN02433        177 LTDAVIEYVDYQIDAGAQVVQIFDSWAGHL-SPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN  240 (345)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEecCccccC-CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            456677888888889999998887754333 777766444    5666554    3468888754

>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=85.54  E-value=11  Score=33.54  Aligned_cols=76  Identities=14%  Similarity=0.030  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhC--CCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESL--NVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL  225 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~a--GAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI  225 (239)
                      +..+++.+.+.+...+.-+++..+..+.+...+..+...+.  ++|++++.|...  .     ....++.+.+ . ++||
T Consensus        15 ~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~--~-----~~~~~~~~~~-~-giPv   85 (305)
T cd06324          15 WNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKS--V-----APELLRLAEG-A-GVKL   85 (305)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc--c-----hHHHHHHHHh-C-CCeE
Confidence            34444444443332245566655666788888899999998  999999975321  1     1223455554 4 7999


Q ss_pred             EEEeCCC
Q psy9602         226 FYYHIPM  232 (239)
Q Consensus       226 iLYN~P~  232 (239)
                      +++|.+.
T Consensus        86 V~~~~~~   92 (305)
T cd06324          86 FLVNSGL   92 (305)
T ss_pred             EEEecCC
Confidence            9999754

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]

Probab=85.53  E-value=8.7  Score=34.45  Aligned_cols=62  Identities=11%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Q psy9602         165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT  234 (239)
Q Consensus       165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~T  234 (239)
                      .++..-...+....+..++.+...|+|+++|.|+      +...+..-.+...++  ++||+.+|.+...
T Consensus        67 ~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~------d~~~~~~~v~~a~~a--GIpVv~~d~~~~~  128 (322)
T COG1879          67 AVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPV------DPDALTPAVKKAKAA--GIPVVTVDSDIPG  128 (322)
T ss_pred             EEEecccccChHHHHHHHHHHHHcCCCEEEEcCC------ChhhhHHHHHHHHHC--CCcEEEEecCCCC
Confidence            3444555688899999999999999999999975      456778888888876  7999999997543

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=85.52  E-value=7.2  Score=35.11  Aligned_cols=81  Identities=16%  Similarity=0.103  Sum_probs=60.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEec--C-CCCHHHHHHHHHHHHhCCCCEEEECCC---CCCCCC-CHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI--G-GTCFQEVVELAKHAESLNVHAVLCLPE---LFFTPA-SVEDLVDYL  213 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV--g-~~St~eAIelar~A~~aGAdaVlV~PP---~y~~~~-s~e~iv~yf  213 (239)
                      -.||.+|..+.++.++..+   ++||++=+  | +++..++.+.++...++|+.++.+---   +-.+.. +.++..+..
T Consensus        50 ~~lt~~e~~~~~~~I~~~~---~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI  126 (238)
T PF13714_consen   50 GLLTLTEMLAAVRRIARAV---SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKI  126 (238)
T ss_dssp             S-S-HHHHHHHHHHHHHHS---SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhh---cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHH
Confidence            5789999999999999987   58999944  3 445899999999999999999999764   111112 789999999


Q ss_pred             HHHHhhCCCCc
Q psy9602         214 RDVGEAAPATP  224 (239)
Q Consensus       214 ~~VaeatpdLP  224 (239)
                      ++..++..+..
T Consensus       127 ~Aa~~a~~~~~  137 (238)
T PF13714_consen  127 RAAVDARRDPD  137 (238)
T ss_dssp             HHHHHHHSSTT
T ss_pred             HHHHHhccCCe
Confidence            99988763333

...

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=85.50  E-value=16  Score=32.84  Aligned_cols=96  Identities=22%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             hHHhhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe-------c-CCCCHHHHHHHHHHHHhCCC
Q psy9602         120 GITLRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ-------I-GGTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       120 ~v~~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG-------V-g~~St~eAIelar~A~~aGA  190 (239)
                      .++..++.|.. +-+.--.|   .+..++..+.++.+++.+...++|+++-       + ...+.++..+.++.|.++||
T Consensus        98 ~ve~A~~~Gad~v~~~~~~g---~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GA  174 (267)
T PRK07226         98 TVEEAIKLGADAVSVHVNVG---SETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGA  174 (267)
T ss_pred             cHHHHHHcCCCEEEEEEecC---ChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence            35556676654 32221222   2335677777877877765336888874       2 33444555666799999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      |.+=..   | .. +    .+.++.+.+.+ .+||+.-
T Consensus       175 D~vKt~---~-~~-~----~~~l~~~~~~~-~ipV~a~  202 (267)
T PRK07226        175 DIVKTN---Y-TG-D----PESFREVVEGC-PVPVVIA  202 (267)
T ss_pred             CEEeeC---C-CC-C----HHHHHHHHHhC-CCCEEEE
Confidence            999554   2 22 2    46677888777 6898653

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=85.48  E-value=4.3  Score=38.05  Aligned_cols=73  Identities=14%  Similarity=0.074  Sum_probs=48.0

Q ss_pred             CcCCCHHHHH----------HHHHHHHHHhcCCCceEE-EecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHH
Q psy9602         140 GVSMTTAERK----------LNLEAWMTEAKTHGFTVM-VQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASVE  207 (239)
Q Consensus       140 ~~sLT~eER~----------~li~~vve~~~G~rvpVI-aGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e  207 (239)
                      ...+|.+|..          ++++.+++..   ++||| +..|+- +.+++.    .+.++||++++|..-.+-.. ++.
T Consensus       173 L~gyt~~~~~~~a~~~~~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa----~vme~GAdgVaVGSaI~ks~-dP~  244 (293)
T PRK04180        173 LTSMSEDELYTAAKELQAPYELVKEVAELG---RLPVVNFAAGGIATPADAA----LMMQLGADGVFVGSGIFKSG-DPE  244 (293)
T ss_pred             HhCCCHHHHHhhccccCCCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHH----HHHHhCCCEEEEcHHhhcCC-CHH
Confidence            4556666633          4566666643   68998 677777 444433    33458999999998666555 777


Q ss_pred             HHHHHHHHHHhhC
Q psy9602         208 DLVDYLRDVGEAA  220 (239)
Q Consensus       208 ~iv~yf~~Vaeat  220 (239)
                      .....|.......
T Consensus       245 ~~akafv~ai~~~  257 (293)
T PRK04180        245 KRARAIVEATTHY  257 (293)
T ss_pred             HHHHHHHHHHHHc
Confidence            7777666665554

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=85.42  E-value=7  Score=36.70  Aligned_cols=85  Identities=14%  Similarity=0.076  Sum_probs=57.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCC-HHHHHHHHHHHHhCCCCEEEECCCCCCC-------------CCC
Q psy9602         142 SMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTC-FQEVVELAKHAESLNVHAVLCLPELFFT-------------PAS  205 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~S-t~eAIelar~A~~aGAdaVlV~PP~y~~-------------~~s  205 (239)
                      .-..+.-.++++.+.+.++..  ++||++=++.+. .++..+.++.++++|+|++.+.....-.             ..+
T Consensus       188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S  267 (344)
T PRK05286        188 LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS  267 (344)
T ss_pred             ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc
Confidence            334555667888888887510  289999888543 3479999999999999999998753210             001


Q ss_pred             -H---HHHHHHHHHHHhhCC-CCcEE
Q psy9602         206 -V---EDLVDYLRDVGEAAP-ATPLF  226 (239)
Q Consensus       206 -~---e~iv~yf~~Vaeatp-dLPIi  226 (239)
                       .   ....++...+.++.+ ++||+
T Consensus       268 G~~~~~~~l~~v~~l~~~~~~~ipIi  293 (344)
T PRK05286        268 GRPLFERSTEVIRRLYKELGGRLPII  293 (344)
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence             1   124456777777663 47876

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=85.40  E-value=3  Score=40.13  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             HhhhcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         122 TLRMAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       122 ~~~~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      +...+.+. ++.+.|...+      ..-.++++.+.+.    ..++++|+ +..+   .++.++.+.++|+|.+.+.|-+
T Consensus        75 ~~a~~aGAdgV~v~g~~~~------~~~~~~i~~a~~~----G~~~~~g~~s~~t---~~e~~~~a~~~GaD~I~~~pg~  141 (430)
T PRK07028         75 EMAAKAGADIVCILGLADD------STIEDAVRAARKY----GVRLMADLINVPD---PVKRAVELEELGVDYINVHVGI  141 (430)
T ss_pred             HHHHHcCCCEEEEecCCCh------HHHHHHHHHHHHc----CCEEEEEecCCCC---HHHHHHHHHhcCCCEEEEEecc
Confidence            34455555 4555654321      1223455555542    46888874 3333   3456788889999999877532


Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         200 FFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       200 y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .-.. ......++++.+.+.. ++||++
T Consensus       142 ~~~~-~~~~~~~~l~~l~~~~-~iPI~a  167 (430)
T PRK07028        142 DQQM-LGKDPLELLKEVSEEV-SIPIAV  167 (430)
T ss_pred             chhh-cCCChHHHHHHHHhhC-CCcEEE
Confidence            1111 1123356888888887 689876

>PRK08999 hypothetical protein; Provisional

Probab=85.35  E-value=4.8  Score=36.49  Aligned_cols=96  Identities=14%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             hhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE------------------------------------
Q psy9602         123 LRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV------------------------------------  166 (239)
Q Consensus       123 ~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV------------------------------------  166 (239)
                      ..++++...+.+=    -..++.+|..++++.+.+.+...++++                                    
T Consensus       152 ~~l~~g~~~vqlR----~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~r~~~~~~  227 (312)
T PRK08999        152 RALAAGIRLIQLR----APQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAARPLPAGR  227 (312)
T ss_pred             HHHHCCCcEEEEe----CCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhhccCCCCC
Confidence            3456666555442    224677777777777776544323333                                    


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC--CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF--FTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y--~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ++|++..+.++    ++.|.+.|+|.+.+.|-+-  .++..+.-=.+.++.+++.+ ++||+.
T Consensus       228 ~ig~S~h~~~~----~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~-~~Pv~A  285 (312)
T PRK08999        228 WVAASCHDAEE----LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV-PLPVYA  285 (312)
T ss_pred             EEEEecCCHHH----HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEE
Confidence            45677666665    4567788999999998542  22201111257788888888 899875

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines

Probab=85.33  E-value=12  Score=31.85  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhcC-CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602         146 AERKLNLEAWMTEAKT-HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP  224 (239)
Q Consensus       146 eER~~li~~vve~~~G-~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP  224 (239)
                      .=+.++++-+.+++.. .++-+++..+..+.+...+..+.+.+.++|++++.|+..      +...+.++.+.+ . ++|
T Consensus        12 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~------~~~~~~~~~l~~-~-~iP   83 (272)
T cd06301          12 NFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDT------AATAPIVKAANA-A-GIP   83 (272)
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCch------hhhHHHHHHHHH-C-CCe
Confidence            3345555555554443 357788777777888889999999999999999987542      112334455544 4 799


Q ss_pred             EEEEeCC
Q psy9602         225 LFYYHIP  231 (239)
Q Consensus       225 IiLYN~P  231 (239)
                      +++++.+
T Consensus        84 vv~~~~~   90 (272)
T cd06301          84 LVYVNRR   90 (272)
T ss_pred             EEEecCC
Confidence            9999874

Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=85.32  E-value=5.3  Score=37.40  Aligned_cols=81  Identities=9%  Similarity=0.062  Sum_probs=51.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEE----ecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCC----CCCCC-----HHH
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMV----QIGG-TCFQEVVELAKHAESLNVHAVLCLPELF----FTPAS-----VED  208 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIa----GVg~-~St~eAIelar~A~~aGAdaVlV~PP~y----~~~~s-----~e~  208 (239)
                      -..+-=.++++.+.+.+   .+||.+    |+.. .+..+++++++.++++|+|++.+..-..    +.+ .     ...
T Consensus       116 ~~p~~~~eiv~avr~~v---~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~-~~~~~~~~~  191 (333)
T PRK11815        116 AEPELVADCVKAMKDAV---SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSP-KENREIPPL  191 (333)
T ss_pred             cCHHHHHHHHHHHHHHc---CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCc-cccccCCCc
Confidence            34444556666666655   356665    5543 3457889999999999999999875321    111 0     112


Q ss_pred             HHHHHHHHHhhCCCCcEEE
Q psy9602         209 LVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       209 iv~yf~~VaeatpdLPIiL  227 (239)
                      -.+++..|.+.++++||+.
T Consensus       192 ~~~~i~~v~~~~~~iPVI~  210 (333)
T PRK11815        192 DYDRVYRLKRDFPHLTIEI  210 (333)
T ss_pred             CHHHHHHHHHhCCCCeEEE
Confidence            2567778888755789753

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=85.28  E-value=13  Score=34.43  Aligned_cols=75  Identities=19%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEE----CCCC---------CCCCCCH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLC----LPEL---------FFTPASV  206 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV----~PP~---------y~~~~s~  206 (239)
                      -.||.+|....++.+...+   .+||++-. ++.+..++.+.++...++|+.++.+    .|..         .... +.
T Consensus        59 ~~~~~~e~~~~~~~I~~a~---~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~-s~  134 (285)
T TIGR02320        59 EEASWTQRLDVVEFMFDVT---TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQA-SV  134 (285)
T ss_pred             CcCCHHHHHHHHHHHHhhc---CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCccccc-CH
Confidence            4689999999999998877   58999944 2268889999999999999999999    3321         0112 78


Q ss_pred             HHHHHHHHHHHhh
Q psy9602         207 EDLVDYLRDVGEA  219 (239)
Q Consensus       207 e~iv~yf~~Vaea  219 (239)
                      ++..+-.+++.++
T Consensus       135 ee~~~kI~Aa~~a  147 (285)
T TIGR02320       135 EEFCGKIRAGKDA  147 (285)
T ss_pred             HHHHHHHHHHHHh
Confidence            8999999998776

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=85.26  E-value=5.3  Score=37.06  Aligned_cols=98  Identities=16%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             hhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE-------------ecCC-CCHHHHHHHHHHHHh
Q psy9602         123 LRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV-------------QIGG-TCFQEVVELAKHAES  187 (239)
Q Consensus       123 ~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa-------------GVg~-~St~eAIelar~A~~  187 (239)
                      ..+++|.. +++=|+     .|+.+|-.++.+.+++.+...+++|=+             |.+. ++.++    ++.+.+
T Consensus        94 ~ai~~GftSVm~d~S-----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~pee----a~~f~~  164 (293)
T PRK07315         94 ECIEVGYTSIMFDGS-----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIED----AKAMVE  164 (293)
T ss_pred             HHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHH----HHHHHH
Confidence            34565554 455554     688999999999999987654555533             2222 34444    444457


Q ss_pred             CCCCEEEEC--CCCCCCCC-CHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         188 LNVHAVLCL--PELFFTPA-SVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       188 aGAdaVlV~--PP~y~~~~-s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      .|+|.+-+.  |-|...+. +..-=++.++.|.+.++++|+++.=
T Consensus       165 tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhG  209 (293)
T PRK07315        165 TGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHG  209 (293)
T ss_pred             cCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEEC
Confidence            899999998  55321110 1222355788888887459998863

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=85.24  E-value=14  Score=36.92  Aligned_cols=100  Identities=11%  Similarity=0.016  Sum_probs=66.9

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE---ecCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV---QIGGTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa---GVg~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      ++...+.|.+++ ++-...+.     +-....++.+.+ ++. .+-..+   +....+.+..+++++.+.++|||.+.+-
T Consensus       103 v~~a~~~Gidi~RIfd~lndv-----~nl~~ai~~vk~-ag~-~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~Ik  175 (499)
T PRK12330        103 VEKSAENGMDVFRVFDALNDP-----RNLEHAMKAVKK-VGK-HAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIK  175 (499)
T ss_pred             HHHHHHcCCCEEEEEecCChH-----HHHHHHHHHHHH-hCC-eEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence            455567777765 66555444     333333443333 332 221111   2235678899999999999999999888


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCC-CCcEEEEe
Q psy9602         197 PELFFTPASVEDLVDYLRDVGEAAP-ATPLFYYH  229 (239)
Q Consensus       197 PP~y~~~~s~e~iv~yf~~Vaeatp-dLPIiLYN  229 (239)
                      ......  +++++.+.++.|-++.| ++||-++-
T Consensus       176 DtaGll--~P~~~~~LV~~Lk~~~~~~ipI~~H~  207 (499)
T PRK12330        176 DMAALL--KPQPAYDIVKGIKEACGEDTRINLHC  207 (499)
T ss_pred             CCccCC--CHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence            766533  78999999999999985 78987653

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=85.18  E-value=5.4  Score=37.19  Aligned_cols=126  Identities=13%  Similarity=0.113  Sum_probs=71.1

Q ss_pred             CccccceEEEeehhhHHH------HHHHHhhHHhhhcCCCCE-EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE
Q psy9602          96 LPKRAKWTIIITAGLLLL------TCMLLVGITLRMAPIIDQ-MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV  168 (239)
Q Consensus        96 l~~~~~W~iv~~A~~~~~------~~~l~~~v~~~~~gg~gl-vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa  168 (239)
                      +-...++-+++.|++...      +..|+..+.   +  .|+ +..|+.+-+ .++ .|..+-++.+.+...  ..|+++
T Consensus        47 ~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~---~--~g~~~~~Gs~~~~-~~~-~e~~~~~~~vr~~~~--~~p~~~  117 (326)
T cd02811          47 LGKRLSAPLLISAMTGGSEKAKEINRNLAEAAE---E--LGIAMGVGSQRAA-LED-PELAESFTVVREAPP--NGPLIA  117 (326)
T ss_pred             CCceecCCEEEeCCCCCChHHHHHHHHHHHHHH---H--cCCCeEecCchhh-ccC-hhhhhHHHHHHHhCC--CceEEe
Confidence            556688888988888764      344433321   1  221 334433322 334 555577777776654  479999


Q ss_pred             ecCCCCHH--HHHHHHHHHHhCCCCEEEECCCC--C-CCCC---CHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         169 QIGGTCFQ--EVVELAKHAESLNVHAVLCLPEL--F-FTPA---SVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       169 GVg~~St~--eAIelar~A~~aGAdaVlV~PP~--y-~~~~---s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      .++.....  ..-+..+..+.++||++-+--..  - ..+.   +.+.+++..+.|.+.+ +.||++=-.+
T Consensus       118 Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~-~vPVivK~~g  187 (326)
T cd02811         118 NLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL-SVPVIVKEVG  187 (326)
T ss_pred             ecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecC
Confidence            88875421  12222223333466777664321  0 1111   3445668889999998 8999986543

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings

Probab=85.15  E-value=13  Score=27.55  Aligned_cols=83  Identities=12%  Similarity=0.063  Sum_probs=46.0

Q ss_pred             EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CH
Q psy9602         131 QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-SV  206 (239)
Q Consensus       131 lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-s~  206 (239)
                      +++.|+.+-..+=..+.-.++.+.+.+..+  ..++.++..   ..+++++++   ...+.|++-+++.|.+.+... ..
T Consensus         2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~--~~~v~~a~~~~~~P~i~~~l~---~l~~~g~~~vvvvPl~~~~g~h~~   76 (101)
T cd03409           2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLP--DFPYYVGFQSGLGPDTEEAIR---ELAEEGYQRVVIVPLAPVSGDEVF   76 (101)
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHH---HHHHcCCCeEEEEeCccccChhhH
Confidence            445555444332233445555555555543  346666543   456665544   455669999999997776221 34


Q ss_pred             HHHHHHHHHHHh
Q psy9602         207 EDLVDYLRDVGE  218 (239)
Q Consensus       207 e~iv~yf~~Vae  218 (239)
                      +++...+.....
T Consensus        77 ~di~~~~~~~~~   88 (101)
T cd03409          77 YDIDSEIGLVRK   88 (101)
T ss_pred             HHHHHHHHHHHH
Confidence            355555554444

This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=85.09  E-value=10  Score=32.40  Aligned_cols=79  Identities=8%  Similarity=0.106  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ...+++-+.+.+..++..+++..+..+.+...+..+...+.++|++++.|...... .+  ...+++.+.+ . ++|+++
T Consensus        14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~-~~--~~~~~~~~~~-~-~ipvV~   88 (273)
T cd01541          14 FPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALP-NP--NIDLYLKLEK-L-GIPYVF   88 (273)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccc-cc--cHHHHHHHHH-C-CCCEEE
Confidence            34455555554444356777776777888888888889999999999987432111 11  1134555544 4 799999


Q ss_pred             EeCC
Q psy9602         228 YHIP  231 (239)
Q Consensus       228 YN~P  231 (239)
                      .|..
T Consensus        89 ~~~~   92 (273)
T cd01541          89 INAS   92 (273)
T ss_pred             EecC
Confidence            9863

Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=85.07  E-value=15  Score=33.84  Aligned_cols=109  Identities=14%  Similarity=0.110  Sum_probs=68.9

Q ss_pred             hHHhhhcCCC-CEEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC-H-------HHHHHHHHHH
Q psy9602         120 GITLRMAPII-DQMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC-F-------QEVVELAKHA  185 (239)
Q Consensus       120 ~v~~~~~gg~-glvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S-t-------~eAIelar~A  185 (239)
                      +++..++.+. .+-++.+++|.     ...|.+|-.+.+..+++.++.....|-+++...+ +       +-+.++++.+
T Consensus        79 die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~  158 (279)
T cd07947          79 DLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLS  158 (279)
T ss_pred             HHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHH
Confidence            4555555554 45567777765     4678888888888888877653466666663222 2       2466677777


Q ss_pred             HhCCCC-EEEECCCCCCC-CC----CHHHHHHHHHHHHhhC--CCCcEEEE
Q psy9602         186 ESLNVH-AVLCLPELFFT-PA----SVEDLVDYLRDVGEAA--PATPLFYY  228 (239)
Q Consensus       186 ~~aGAd-aVlV~PP~y~~-~~----s~e~iv~yf~~Vaeat--pdLPIiLY  228 (239)
                      .++|++ -+.+.....+. |.    -++++.+.++.+.+.+  |+.||-++
T Consensus       159 ~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H  209 (279)
T cd07947         159 KESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWH  209 (279)
T ss_pred             HHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEE
Confidence            779999 46555444322 10    2378999999998885  33345544

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=85.05  E-value=2.6  Score=38.64  Aligned_cols=58  Identities=19%  Similarity=0.202  Sum_probs=44.9

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      ..|.||+-..+. ++-.+.++.+.+.+   ++||++|.|=.+.+++-++.     .|||+++|-.-.
T Consensus       172 ~~GvTG~~~~~~-~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~-----~~aDGvIVGSa~  229 (259)
T PF00290_consen  172 RMGVTGSRTELP-DELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA-----AGADGVIVGSAF  229 (259)
T ss_dssp             SSSSSSTTSSCH-HHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-----TTSSEEEESHHH
T ss_pred             cCCCCCCcccch-HHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-----ccCCEEEECHHH
Confidence            589999999886 67888899988876   47999999987777665443     799999998543

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins

Probab=84.96  E-value=12  Score=36.15  Aligned_cols=78  Identities=8%  Similarity=-0.046  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602         147 ERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL  225 (239)
Q Consensus       147 ER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI  225 (239)
                      .-.+..+.+++..+...+.|+. +....+.+++.+.++.+.+.++|++++.-+.|..   ...+...    +... +.||
T Consensus        20 ~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~---~~~~~~~----~~~~-~~Pv   91 (452)
T cd00578          20 QVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP---AKMWIAG----LSEL-RKPV   91 (452)
T ss_pred             HHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccccccc---HHHHHHH----HHhc-CCCE
Confidence            3333344444443321345554 4333588899999999999999999998776532   2333333    3445 7999


Q ss_pred             EEEeCCC
Q psy9602         226 FYYHIPM  232 (239)
Q Consensus       226 iLYN~P~  232 (239)
                      ++++.|.
T Consensus        92 ll~a~~~   98 (452)
T cd00578          92 LLLATQF   98 (452)
T ss_pred             EEEeCCC
Confidence            9999986

FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=84.76  E-value=7.6  Score=33.73  Aligned_cols=98  Identities=18%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             EEEeccccCC--cCCCHHHHHHHHHHHHHHh----------------------cCCCceEEEecC----CCCHHHHHHHH
Q psy9602         131 QMVNGTTGEG--VSMTTAERKLNLEAWMTEA----------------------KTHGFTVMVQIG----GTCFQEVVELA  182 (239)
Q Consensus       131 lvV~GstGE~--~sLT~eER~~li~~vve~~----------------------~G~rvpVIaGVg----~~St~eAIela  182 (239)
                      ++.+-+..|+  +.++.++|.++++.+.+..                      .+ +..||+..-    ..+.++.+++.
T Consensus        58 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~-~~~iI~S~H~f~~tp~~~~l~~~~  136 (224)
T PF01487_consen   58 IFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARKG-GTKIILSYHDFEKTPSWEELIELL  136 (224)
T ss_dssp             EEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHT-TSEEEEEEEESS---THHHHHHHH
T ss_pred             EEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhhC-CCeEEEEeccCCCCCCHHHHHHHH
Confidence            3444444333  2456677777776666542                      23 678888654    67778899999


Q ss_pred             HHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         183 KHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       183 r~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +.+.+.|||.+=+..+.-... +--.+.++...+.+. ++.|++.|+.=
T Consensus       137 ~~~~~~gadivKia~~~~~~~-D~~~l~~~~~~~~~~-~~~p~i~~~MG  183 (224)
T PF01487_consen  137 EEMQELGADIVKIAVMANSPE-DVLRLLRFTKEFREE-PDIPVIAISMG  183 (224)
T ss_dssp             HHHHHTT-SEEEEEEE-SSHH-HHHHHHHHHHHHHHH-TSSEEEEEEET
T ss_pred             HHHHhcCCCeEEEEeccCCHH-HHHHHHHHHHHHhhc-cCCcEEEEEcC
Confidence            999999999886664332111 333455555555555 48999999863

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=84.75  E-value=1.8  Score=39.75  Aligned_cols=64  Identities=23%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             cCCCceEEEecCCCC--------HHHHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         160 KTHGFTVMVQIGGTC--------FQEVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       160 ~G~rvpVIaGVg~~S--------t~eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      .+ +.+||+=+--.|        -.+-.++++.+++.||+++.|+. |.||+. +    ++|.+.+.+++ ++||..-||
T Consensus        43 ~~-~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~G-s----~e~L~~v~~~v-~~PvL~KDF  115 (254)
T COG0134          43 SG-KPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQG-S----FEDLRAVRAAV-DLPVLRKDF  115 (254)
T ss_pred             CC-CceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCC-C----HHHHHHHHHhc-CCCeeeccC
Confidence            45 788998663222        22456699999999999999988 889887 4    55668898999 899998776

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=84.74  E-value=8.8  Score=35.85  Aligned_cols=64  Identities=11%  Similarity=0.049  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhcCCCceEE-EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC
Q psy9602         150 LNLEAWMTEAKTHGFTVM-VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA  220 (239)
Q Consensus       150 ~li~~vve~~~G~rvpVI-aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat  220 (239)
                      ++++.+++..   ++||| +..|+-.+.+-+   +.+.++||++++|..-.+-.. ++......|.......
T Consensus       184 elLk~l~~~~---~iPVV~iAeGGI~Tpena---~~v~e~GAdgVaVGSAI~~a~-dP~~~tk~f~~ai~~~  248 (283)
T cd04727         184 ELVKETAKLG---RLPVVNFAAGGVATPADA---ALMMQLGADGVFVGSGIFKSE-NPEKRARAIVEAVTHY  248 (283)
T ss_pred             HHHHHHHHhc---CCCeEEEEeCCCCCHHHH---HHHHHcCCCEEEEcHHhhcCC-CHHHHHHHHHHHHHhc
Confidence            5677777754   58998 677777433333   333468999999998666555 7788888887776665

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=84.72  E-value=9.5  Score=36.39  Aligned_cols=81  Identities=19%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE-----ecCCCCHHHHHHHHHHH-HhCCCCEEEECCCCCCCCCCH
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV-----QIGGTCFQEVVELAKHA-ESLNVHAVLCLPELFFTPASV  206 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa-----GVg~~St~eAIelar~A-~~aGAdaVlV~PP~y~~~~s~  206 (239)
                      ++|.-. ...+|.||-...++.++..+.   .|+++     |....|.+++++.+... ++.||++|=+--       ..
T Consensus        69 ~lG~~~-T~~Vtld~mi~H~~aV~Rga~---~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEG-------g~  137 (332)
T PLN02424         69 VHGHDT-TLPITLDEMLVHCRAVARGAN---RPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEG-------GS  137 (332)
T ss_pred             hcCCCC-CCCcCHHHHHHHHHHHhccCC---CCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECC-------Cc
Confidence            334333 447999999999999988764   46655     44556899999999988 679999998762       22


Q ss_pred             HHHHHHHHHHHhhCCCCcEE
Q psy9602         207 EDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       207 e~iv~yf~~VaeatpdLPIi  226 (239)
                      .+...-.+.+.++  ++|||
T Consensus       138 ~~~~~~I~~l~~~--GIPV~  155 (332)
T PLN02424        138 PSRVTAAKAIVEA--GIAVM  155 (332)
T ss_pred             HHHHHHHHHHHHc--CCCEE
Confidence            4577888888854  79998

>PRK00208 thiG thiazole synthase; Reviewed

Probab=84.44  E-value=11  Score=34.67  Aligned_cols=83  Identities=17%  Similarity=0.146  Sum_probs=56.9

Q ss_pred             cCCCCEE-Ee-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q psy9602         126 APIIDQM-VN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP  203 (239)
Q Consensus       126 ~gg~glv-V~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~  203 (239)
                      +-|+..+ ++ ...|-+..++..|.   ++.+++..   ++|||++-+=.+.+++    ..|.++|||+|++..-..-..
T Consensus       142 ~~G~~~vmPlg~pIGsg~gi~~~~~---i~~i~e~~---~vpVIveaGI~tpeda----~~AmelGAdgVlV~SAItka~  211 (250)
T PRK00208        142 EAGCAAVMPLGAPIGSGLGLLNPYN---LRIIIEQA---DVPVIVDAGIGTPSDA----AQAMELGADAVLLNTAIAVAG  211 (250)
T ss_pred             HcCCCEeCCCCcCCCCCCCCCCHHH---HHHHHHhc---CCeEEEeCCCCCHHHH----HHHHHcCCCEEEEChHhhCCC
Confidence            3355544 32 34555567766544   66666653   5899998777666664    556779999999998665434


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy9602         204 ASVEDLVDYLRDVGEA  219 (239)
Q Consensus       204 ~s~e~iv~yf~~Vaea  219 (239)
                       ++..+-..|..-.++
T Consensus       212 -dP~~ma~af~~Av~a  226 (250)
T PRK00208        212 -DPVAMARAFKLAVEA  226 (250)
T ss_pred             -CHHHHHHHHHHHHHH
Confidence             788888888876654

>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=84.44  E-value=15  Score=32.06  Aligned_cols=76  Identities=16%  Similarity=0.043  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++-+.+.+...+..+++..+..+.+.-++..+.+...++|++++.++.      .+....+++.+.+ . ++|+++
T Consensus        15 ~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~------~~~~~~~~~~~~~-~-~iPvV~   86 (280)
T cd06315          15 ILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVD------AAELQAELELAQK-A-GIPVVG   86 (280)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------HHHHHHHHHHHHH-C-CCCEEE
Confidence            3445555544443324566666666788888899999999999999998632      1222345555554 4 799999


Q ss_pred             EeCC
Q psy9602         228 YHIP  231 (239)
Q Consensus       228 YN~P  231 (239)
                      +|.+
T Consensus        87 ~d~~   90 (280)
T cd06315          87 WHAG   90 (280)
T ss_pred             ecCC
Confidence            9974

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK10703 DNA-binding transcriptional repressor PurR; Provisional

Probab=84.41  E-value=8.4  Score=34.46  Aligned_cols=75  Identities=13%  Similarity=0.103  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +..+++-+.+.+...+..+++.....+.+.-.++.+.....++|++++.|..+    ++ +.   ++.+.+.. ++|+++
T Consensus        74 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~----~~-~~---~~~l~~~~-~iPvV~  144 (341)
T PRK10703         74 FAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEY----PE-PL---LAMLEEYR-HIPMVV  144 (341)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----CH-HH---HHHHHhcC-CCCEEE
Confidence            34444444443333245666666667777778888888888999999987532    22 23   23344424 799999


Q ss_pred             EeCC
Q psy9602         228 YHIP  231 (239)
Q Consensus       228 YN~P  231 (239)
                      +|.+
T Consensus       145 ~d~~  148 (341)
T PRK10703        145 MDWG  148 (341)
T ss_pred             Eecc
Confidence            9864

>PLN02535 glycolate oxidase

Probab=84.36  E-value=8  Score=37.14  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=58.4

Q ss_pred             CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--
Q psy9602         127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--  204 (239)
Q Consensus       127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--  204 (239)
                      |..+++|.|+.|-..-.+..- ..++..+.+.+++ ++|||+-=|=.+-.+++    .|..+||++|++--|+.+...  
T Consensus       244 GvD~I~vsn~GGr~~d~~~~t-~~~L~ev~~av~~-~ipVi~dGGIr~g~Dv~----KALalGA~aV~vGr~~l~~l~~~  317 (364)
T PLN02535        244 GVAGIIVSNHGARQLDYSPAT-ISVLEEVVQAVGG-RVPVLLDGGVRRGTDVF----KALALGAQAVLVGRPVIYGLAAK  317 (364)
T ss_pred             CCCEEEEeCCCcCCCCCChHH-HHHHHHHHHHHhc-CCCEEeeCCCCCHHHHH----HHHHcCCCEEEECHHHHhhhhhc
Confidence            445677888877554334332 4556666666666 79999844444444443    467789999999999977642  


Q ss_pred             CHHHHHHHHHHHHhh
Q psy9602         205 SVEDLVDYLRDVGEA  219 (239)
Q Consensus       205 s~e~iv~yf~~Vaea  219 (239)
                      .++++.+.++.+.+.
T Consensus       318 g~~gv~~~l~~l~~e  332 (364)
T PLN02535        318 GEDGVRKVIEMLKDE  332 (364)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            678888888776554

>PRK09485 mmuM homocysteine methyltransferase; Provisional

Probab=84.28  E-value=24  Score=32.52  Aligned_cols=95  Identities=19%  Similarity=0.095  Sum_probs=67.3

Q ss_pred             HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC---------CCHHHHHHHHHHHHhCCCC
Q psy9602         121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG---------TCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~---------~St~eAIelar~A~~aGAd  191 (239)
                      ++...+.+++++++-|..     +.+|-+.+++.+.+...  .+|+++.++.         .+.+++++.+..  ..+++
T Consensus       146 ~~~l~~~gvD~i~~ET~~-----~~~E~~~~~~~~~~~~~--~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~--~~~~~  216 (304)
T PRK09485        146 IEALAEAGADLLACETIP-----NLDEAEALVELLKEEFP--GVPAWLSFTLRDGTHISDGTPLAEAAALLAA--SPQVV  216 (304)
T ss_pred             HHHHhhCCCCEEEEeccC-----CHHHHHHHHHHHHHhcC--CCcEEEEEEeCCCCcCCCCCCHHHHHHHHhc--CCCce
Confidence            455568888888876543     56788888888775543  4799987654         346677777642  22466


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      ++.+-     .. +++.+....+.+...+ ++|+++|-|-
T Consensus       217 ~iGiN-----C~-~p~~~~~~l~~~~~~~-~~pl~~~PNa  249 (304)
T PRK09485        217 AVGVN-----CT-APELVTAAIAALRAVT-DKPLVVYPNS  249 (304)
T ss_pred             EEEec-----CC-CHHHHHHHHHHHHhcc-CCcEEEECCC
Confidence            76665     22 4588999999998877 7999999874

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=84.25  E-value=3  Score=35.98  Aligned_cols=61  Identities=28%  Similarity=0.398  Sum_probs=45.7

Q ss_pred             CceEEEecCCCCHH--------HHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         163 GFTVMVQIGGTCFQ--------EVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       163 rvpVIaGVg~~St~--------eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      +++||+-+-..|..        +.+++|+.+++.||+++-+.. +.++.. +    .+..+.|.+.+ ++||++-+
T Consensus        10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g-~----~~~~~~i~~~v-~iPi~~~~   79 (217)
T cd00331          10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQG-S----LEDLRAVREAV-SLPVLRKD   79 (217)
T ss_pred             CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCC-C----HHHHHHHHHhc-CCCEEECC
Confidence            68999977665544        489999999999999998875 444433 3    35667777777 89999765

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK10653 D-ribose transporter subunit RbsB; Provisional

Probab=84.19  E-value=18  Score=31.74  Aligned_cols=77  Identities=10%  Similarity=0.043  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +.+++..+.+.+...+..+++.....+.+...+..+...+.++|++++.|..      .+.+...++.+.+ . ++|+++
T Consensus        41 ~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~------~~~~~~~l~~~~~-~-~ipvV~  112 (295)
T PRK10653         41 FVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD------SDAVGNAVKMANQ-A-NIPVIT  112 (295)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hHHHHHHHHHHHH-C-CCCEEE
Confidence            3445544444443334666665556677788888888888899999987532      2333344555544 4 799999


Q ss_pred             EeCCC
Q psy9602         228 YHIPM  232 (239)
Q Consensus       228 YN~P~  232 (239)
                      +|.+.
T Consensus       113 ~~~~~  117 (295)
T PRK10653        113 LDRGA  117 (295)
T ss_pred             EccCC
Confidence            99753

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=84.19  E-value=13  Score=30.85  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      ..+.+-+.+.++.+++.+++.....+....++.++.+.+.++|++++.+...    +  ...  ++.+.+ . ++|++.+
T Consensus        15 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~----~--~~~--~~~~~~-~-~ipvv~~   84 (264)
T cd06267          15 AELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRL----D--DEL--LEELAA-L-GIPVVLV   84 (264)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCc----c--hHH--HHHHHH-c-CCCEEEe
Confidence            3444444444332245666666666666777777777777777777765331    1  111  334333 3 6777777


Q ss_pred             eCC
Q psy9602         229 HIP  231 (239)
Q Consensus       229 N~P  231 (239)
                      +.+
T Consensus        85 ~~~   87 (264)
T cd06267          85 DRP   87 (264)
T ss_pred             ccc
Confidence            765

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=84.18  E-value=5.7  Score=36.61  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             HhhhcCCCCE-EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE---ecC------------CCCHHHHHHHHHHH
Q psy9602         122 TLRMAPIIDQ-MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV---QIG------------GTCFQEVVELAKHA  185 (239)
Q Consensus       122 ~~~~~gg~gl-vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa---GVg------------~~St~eAIelar~A  185 (239)
                      ...+++|... .+=++     .++.+|..++.+.+++.+...++||=+   .++            .++.+++   .+++
T Consensus        91 ~~Al~~G~tsVm~d~s-----~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea---~~f~  162 (281)
T PRK06806         91 KEALEIGFTSVMFDGS-----HLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEA---KRFA  162 (281)
T ss_pred             HHHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHH---HHHH
Confidence            3446666654 45555     478999999999999988764566532   222            2333333   2333


Q ss_pred             HhCCCCEEEE--CCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         186 ESLNVHAVLC--LPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       186 ~~aGAdaVlV--~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      ++.|+|.+-+  -|.|...+..+.-=++.+++|.+.+ ++|+++.=
T Consensus       163 ~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~-~iPlV~hG  207 (281)
T PRK06806        163 EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV-HIPLVLHG  207 (281)
T ss_pred             HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc-CCCEEEEC
Confidence            4579999999  6555433312333456788999998 89998864

>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species

Probab=84.17  E-value=15  Score=32.68  Aligned_cols=61  Identities=7%  Similarity=-0.034  Sum_probs=45.2

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      ++-+++.-+..+.+..++..+.+.+.++|++++.|..      .+.+...++.+.+ . ++||+++|.+
T Consensus        31 g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~------~~~~~~~~~~~~~-~-giPvV~~~~~   91 (303)
T cd01539          31 KVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD------PTAAQTVINKAKQ-K-NIPVIFFNRE   91 (303)
T ss_pred             CeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc------hhhHHHHHHHHHH-C-CCCEEEeCCC
Confidence            5677776666778888888999999999999998632      2334456666544 5 7999999864

Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=84.17  E-value=4.5  Score=36.73  Aligned_cols=92  Identities=26%  Similarity=0.226  Sum_probs=56.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcC-CCceEEEecCCCC---HHHHHHHHHHHHhCCCCEEEEC--CCCCC-CC-C-CHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKT-HGFTVMVQIGGTC---FQEVVELAKHAESLNVHAVLCL--PELFF-TP-A-SVEDLVD  211 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G-~rvpVIaGVg~~S---t~eAIelar~A~~aGAdaVlV~--PP~y~-~~-~-s~e~iv~  211 (239)
                      .+...+...+-++...+.... ..+|||+++...+   .++-+++++..+ .|||++-+-  -|+.- .. . ..+++..
T Consensus        73 ~n~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~  151 (295)
T PF01180_consen   73 PNPGLEYYLERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVA  151 (295)
T ss_dssp             -BSHHHHHHHHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHH
Confidence            344445555545444444321 1589999999999   999999999888 899999772  34331 11 1 3444444


Q ss_pred             -HHHHHHhhCCCCcEEEEeCCCCc
Q psy9602         212 -YLRDVGEAAPATPLFYYHIPMFT  234 (239)
Q Consensus       212 -yf~~VaeatpdLPIiLYN~P~~T  234 (239)
                       ..+.+.+.. ++||++-=-|..+
T Consensus       152 ~i~~~v~~~~-~~Pv~vKL~p~~~  174 (295)
T PF01180_consen  152 EIVRAVREAV-DIPVFVKLSPNFT  174 (295)
T ss_dssp             HHHHHHHHHH-SSEEEEEE-STSS
T ss_pred             HHHHHHHhcc-CCCEEEEecCCCC
Confidence             445555555 8999997666443

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=84.03  E-value=7.9  Score=35.64  Aligned_cols=69  Identities=17%  Similarity=0.070  Sum_probs=53.7

Q ss_pred             hcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC--CCC------CCCC--C-CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         159 AKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCL--PEL------FFTP--A-SVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       159 ~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~--PP~------y~~~--~-s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ... ..|+++++.+++.++..+.++.++++|+|+|=+-  -|.      |...  . +.+-+.+-.++|.+++ ++||.+
T Consensus        59 ~~~-~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~v  136 (319)
T TIGR00737        59 AED-ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTV  136 (319)
T ss_pred             CCc-cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEE
Confidence            344 6799999999999999999999999999999663  233      1111  1 4677788888888888 799988


Q ss_pred             Ee
Q psy9602         228 YH  229 (239)
Q Consensus       228 YN  229 (239)
                      .-
T Consensus       137 Ki  138 (319)
T TIGR00737       137 KI  138 (319)
T ss_pred             EE
Confidence            64

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=83.94  E-value=19  Score=30.37  Aligned_cols=80  Identities=16%  Similarity=0.124  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT  223 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL  223 (239)
                      +..=..++++.+.+.+...+.-++......+.+...+..+.+...++|++++.++.      .+...+.+..+.+ . ++
T Consensus        10 ~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~------~~~~~~~l~~l~~-~-~i   81 (268)
T cd06323          10 NNPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTD------SDAVVPAVKAANE-A-GI   81 (268)
T ss_pred             cCHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hHHHHHHHHHHHH-C-CC
Confidence            34444555555555444334666666666788888888888888899999987532      1223345555544 4 79


Q ss_pred             cEEEEeCC
Q psy9602         224 PLFYYHIP  231 (239)
Q Consensus       224 PIiLYN~P  231 (239)
                      |+++.+.+
T Consensus        82 pvv~~~~~   89 (268)
T cd06323          82 PVFTIDRE   89 (268)
T ss_pred             cEEEEccC
Confidence            99988775

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=83.91  E-value=13  Score=31.54  Aligned_cols=61  Identities=16%  Similarity=0.159  Sum_probs=40.4

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +..+++..+..+.+...+..+.....++|++++.++..      ....+.++.+.+ . ++|+++.|.+
T Consensus        29 g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~------~~~~~~i~~~~~-~-~ipvV~~~~~   89 (273)
T cd06305          29 GGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRA------EVLKPWVKRALD-A-GIPVVAFDVD   89 (273)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh------hhhHHHHHHHHH-c-CCCEEEecCC
Confidence            45556555666777778888887788999999976421      222333455544 3 6899999864

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>PLN02428 lipoic acid synthase

Probab=83.88  E-value=10  Score=36.24  Aligned_cols=79  Identities=14%  Similarity=0.106  Sum_probs=58.5

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC---CC--C--CCCCCHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP---EL--F--FTPASVEDLVD  211 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P---P~--y--~~~~s~e~iv~  211 (239)
                      ...+.+++.++++.+.+...|.  +.-+|+|. +++.++.++.++...++|+|.+.+..   |.  .  ...+=..+-++
T Consensus       226 ~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~  304 (349)
T PLN02428        226 PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFE  304 (349)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHH
Confidence            4578999999999998874442  45689999 68999999999999999999998743   21  0  00011235567


Q ss_pred             HHHHHHhhC
Q psy9602         212 YLRDVGEAA  220 (239)
Q Consensus       212 yf~~Vaeat  220 (239)
                      .|+.++...
T Consensus       305 ~~~~~~~~~  313 (349)
T PLN02428        305 FWREYGEEM  313 (349)
T ss_pred             HHHHHHHHc
Confidence            888888876

>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=83.83  E-value=18  Score=31.30  Aligned_cols=76  Identities=13%  Similarity=-0.008  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +..+++.+.+.+...+..++...+..+.....+..+.+...++|++++.|..      .+.....++.+.++  ++|+++
T Consensus        14 ~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~------~~~~~~~i~~~~~~--~iPvV~   85 (272)
T cd06313          14 CAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLG------IGTLTEAVQKAIAR--GIPVID   85 (272)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hHHhHHHHHHHHHC--CCcEEE
Confidence            3344444444333225677777666688888899999999999999997532      12233445555554  799999


Q ss_pred             EeCC
Q psy9602         228 YHIP  231 (239)
Q Consensus       228 YN~P  231 (239)
                      +|.+
T Consensus        86 ~~~~   89 (272)
T cd06313          86 MGTL   89 (272)
T ss_pred             eCCC
Confidence            9974

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK12928 lipoyl synthase; Provisional

Probab=83.82  E-value=10  Score=35.01  Aligned_cols=77  Identities=12%  Similarity=0.051  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC---CCC-CCC---CCHHHHHHHH
Q psy9602         143 MTTAERKLNLEAWMTEAKT--HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP---ELF-FTP---ASVEDLVDYL  213 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G--~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P---P~y-~~~---~s~e~iv~yf  213 (239)
                      .|.+++.++++.+.+...+  .+.-+|+|. +++-++.++.++.+.++|+|.+-+.+   |.- ..|   +-..+-++.|
T Consensus       185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~  263 (290)
T PRK12928        185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL  263 (290)
T ss_pred             CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence            6889999999999987522  156799999 88999999999999999999999864   221 001   0124556778


Q ss_pred             HHHHhhC
Q psy9602         214 RDVGEAA  220 (239)
Q Consensus       214 ~~Vaeat  220 (239)
                      +.++...
T Consensus       264 ~~~~~~~  270 (290)
T PRK12928        264 GQIAREL  270 (290)
T ss_pred             HHHHHHc
Confidence            8888876

>PLN03228 methylthioalkylmalate synthase; Provisional

Probab=83.81  E-value=14  Score=36.96  Aligned_cols=96  Identities=13%  Similarity=0.023  Sum_probs=69.6

Q ss_pred             EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCce-EEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602         131 QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFT-VMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFF  201 (239)
Q Consensus       131 lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvp-VIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~  201 (239)
                      +.+..++++.+     ..|.+|-.+.+..+++.++..... |.+|.   +-.+.+..+++++.|.++|||.+.+......
T Consensus       185 V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~  264 (503)
T PLN03228        185 ILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGI  264 (503)
T ss_pred             EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence            45666777665     568888888888888777652233 45554   3355777899999999999999888776543


Q ss_pred             CCCCHHHHHHHHHHHHhhCC---CCcEEEE
Q psy9602         202 TPASVEDLVDYLRDVGEAAP---ATPLFYY  228 (239)
Q Consensus       202 ~~~s~e~iv~yf~~Vaeatp---dLPIiLY  228 (239)
                      .  ++.++.++++.+.+..|   ++||-++
T Consensus       265 ~--tP~~v~~lV~~l~~~~~~~~~i~I~~H  292 (503)
T PLN03228        265 N--MPHEFGELVTYVKANTPGIDDIVFSVH  292 (503)
T ss_pred             C--CHHHHHHHHHHHHHHhccccCceeEec
Confidence            3  78999999999988775   3555543

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=83.70  E-value=9.5  Score=35.88  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCC--ceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC---CHHHHHH
Q psy9602         144 TTAERKLNLEAWMTEAKTHG--FTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA---SVEDLVD  211 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~r--vpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~---s~e~iv~  211 (239)
                      |.+-|.+++..+++.+.. .  .||.+=++       +.+.++++++++..++.|+|.+-|....+..+.   ...-...
T Consensus       187 slenR~Rf~~eii~~ir~-~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~  265 (337)
T PRK13523        187 SPENRYRFLREIIDAVKE-VWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVP  265 (337)
T ss_pred             CHHHHHHHHHHHHHHHHH-hcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHH
Confidence            467788877777776655 3  36655444       357899999999999999999999765432210   0111234


Q ss_pred             HHHHHHhhCCCCcEEE
Q psy9602         212 YLRDVGEAAPATPLFY  227 (239)
Q Consensus       212 yf~~VaeatpdLPIiL  227 (239)
                      +-+.|.+.+ ++||+.
T Consensus       266 ~~~~ik~~~-~ipVi~  280 (337)
T PRK13523        266 FAEHIREHA-NIATGA  280 (337)
T ss_pred             HHHHHHhhc-CCcEEE
Confidence            556677777 789764

>PLN02489 homocysteine S-methyltransferase

Probab=83.67  E-value=28  Score=32.81  Aligned_cols=96  Identities=13%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC---------CCHHHHHHHHHHHHhCCCC
Q psy9602         121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG---------TCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~---------~St~eAIelar~A~~aGAd  191 (239)
                      ++..++.+++++++-|.     -+.+|-+.+++.+.+. .. ++|+++.++.         .+..++++.+..  ..+++
T Consensus       173 i~~l~~~gvD~i~~ET~-----~~l~E~~a~~~~~~~~-~~-~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~--~~~~~  243 (335)
T PLN02489        173 LQVLAEAGPDLIAFETI-----PNKLEAQAYVELLEEE-NI-KIPAWISFNSKDGVNVVSGDSLLECASIADS--CKKVV  243 (335)
T ss_pred             HHHHHhCCCCEEEEecc-----CChHHHHHHHHHHHHc-CC-CCeEEEEEEeCCCCccCCCCcHHHHHHHHHh--cCCce
Confidence            44456788888888664     3557777777777654 32 5899887743         345667666642  23566


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      ++.+-     .- +++.+..-++.+...+ +.|+++|-|..
T Consensus       244 ~iGiN-----C~-~p~~~~~~l~~l~~~~-~~pl~vyPNaG  277 (335)
T PLN02489        244 AVGIN-----CT-PPRFIHGLILSIRKVT-SKPIVVYPNSG  277 (335)
T ss_pred             EEEec-----CC-CHHHHHHHHHHHHhhc-CCcEEEECCCC
Confidence            66665     22 4588889999998888 79999999953

>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems

Probab=83.67  E-value=14  Score=31.66  Aligned_cols=76  Identities=12%  Similarity=0.069  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhcCC-CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         148 RKLNLEAWMTEAKTH-GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       148 R~~li~~vve~~~G~-rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      ..++++.+.+.+... +.-+++.....+.+...+..+.+...++|++++.|+..      +.....++.+.+ . ++|++
T Consensus        14 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~------~~~~~~~~~~~~-~-~ipvV   85 (270)
T cd06308          14 RAAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEA------APLTPVVEEAYR-A-GIPVI   85 (270)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCch------hhchHHHHHHHH-C-CCCEE
Confidence            344444444433321 35666655566777778888888899999999986432      112233444444 4 79999


Q ss_pred             EEeCC
Q psy9602         227 YYHIP  231 (239)
Q Consensus       227 LYN~P  231 (239)
                      ++|.+
T Consensus        86 ~~~~~   90 (270)
T cd06308          86 LLDRK   90 (270)
T ss_pred             EeCCC
Confidence            99864

Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.

>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II

Probab=83.53  E-value=10  Score=37.46  Aligned_cols=59  Identities=10%  Similarity=-0.131  Sum_probs=43.9

Q ss_pred             cCCcCCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHhCCC-----CEEEECC
Q psy9602         138 GEGVSMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAESLNV-----HAVLCLP  197 (239)
Q Consensus       138 GE~~sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~aGA-----daVlV~P  197 (239)
                      ..-.+...+||...+..+++    .++. ++-..+++++.++++.++.++.|++.|+     .++|+-+
T Consensus       196 ~dq~~~p~~eRv~~~~~a~~~a~~eTG~-~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~~  263 (439)
T cd08211         196 ANQPFCPLKKVIPLVADAMRRAQDETGE-AKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVDG  263 (439)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEECc
Confidence            34456677999855554444    4544 4555679998899999999999999877     8888885

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism

Probab=83.48  E-value=8.6  Score=32.80  Aligned_cols=59  Identities=14%  Similarity=0.143  Sum_probs=39.0

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +..+++..+..+.+..++..+.+...++|++++.++.   . ++.    .++.+.+ . +.|++++|.+
T Consensus        29 g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~---~-~~~----~~~~~~~-~-~ipvV~~~~~   87 (268)
T cd06270          29 GKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKA---L-SDD----ELIELAA-Q-VPPLVLINRH   87 (268)
T ss_pred             CCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCC---C-CHH----HHHHHhh-C-CCCEEEEecc
Confidence            3556665556667777788888888889999998643   1 221    1455544 3 6899888864

Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=83.43  E-value=8.5  Score=33.31  Aligned_cols=74  Identities=12%  Similarity=0.120  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCC------CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGT------CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA  222 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~------St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd  222 (239)
                      .+.++.+.+.+   .+|++.-....      -.....+.++.|.++|||.+++..|....+ +.+++.++++.+.+. ++
T Consensus        45 ~~~i~~i~~~~---~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~-~~  119 (221)
T PRK01130         45 VEDIKAIRAVV---DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY-PG  119 (221)
T ss_pred             HHHHHHHHHhC---CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC-CC
Confidence            35666666654   46876221100      001123568999999999888876654333 224444555555443 37


Q ss_pred             CcEEE
Q psy9602         223 TPLFY  227 (239)
Q Consensus       223 LPIiL  227 (239)
                      +|++.
T Consensus       120 i~vi~  124 (221)
T PRK01130        120 QLLMA  124 (221)
T ss_pred             CeEEE
Confidence            88775

>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=83.43  E-value=6.2  Score=38.03  Aligned_cols=121  Identities=15%  Similarity=0.187  Sum_probs=73.1

Q ss_pred             CCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC-
Q psy9602          95 DLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG-  172 (239)
Q Consensus        95 ~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~-  172 (239)
                      .....++|-.     ++-|-.       +..+-|-|+- .+=+.--+.-|....-+++|+...++++..+..|..|++. 
T Consensus        50 ~~~aaiDWd~-----TlafR~-------~Lw~~GLgVAEAMDTAQRGMGLDW~~a~ELIrRs~aeA~~~g~~ia~GaGTD  117 (382)
T PF06187_consen   50 GAPAAIDWDA-----TLAFRR-------HLWSLGLGVAEAMDTAQRGMGLDWAAARELIRRSAAEARAVGARIACGAGTD  117 (382)
T ss_dssp             TT---B-HHH-----HHHHHH-------HHHHTT-EEEET-GGGTBTTTB-HHHHHHHHHHHHHHHHTSS--EEEEE--T
T ss_pred             CCCccCCHHH-----HHHHHH-------HHHHccchHHHHhhhhhhcCCCChHHHHHHHHHHHHHHHhcCCcEEeecCcC
Confidence            4777888872     222222       2345666665 6678888889999999999999998887423467778873 


Q ss_pred             -------CCHHHHH----HHHHHHHhCCCCEEEECCCCCCC--CCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         173 -------TCFQEVV----ELAKHAESLNVHAVLCLPELFFT--PASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       173 -------~St~eAI----elar~A~~aGAdaVlV~PP~y~~--~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                             .+.++++    |+....++.|+..||...=..-.  . ++++..+-|..|.+.+ +-||||+=
T Consensus       118 ~L~~~~~~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~-~p~DY~~VY~~lL~q~-~~PVILHW  185 (382)
T PF06187_consen  118 QLDPAPAASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVAR-SPDDYLRVYDRLLSQA-DEPVILHW  185 (382)
T ss_dssp             TS---TT--HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH---SHHHHHHHHHHHHHH--SS-EEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhC-CHHHHHHHHHHHHHHc-CCCEEEEe
Confidence                   2444444    47778889998887766422211  2 8899999999999999 99999974

; PDB: 4DNH_A.

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=83.42  E-value=12  Score=31.65  Aligned_cols=73  Identities=7%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++.+.+++...+..++...+..+.+..++..+.....++|++++.++.   . + ..+   +..+.+ . ++|++++
T Consensus        15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~---~-~-~~~---~~~~~~-~-~ipvv~~   84 (259)
T cd01542          15 SRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATT---I-T-DEH---REAIKK-L-NVPVVVV   84 (259)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC---C-C-HHH---HHHHhc-C-CCCEEEE
Confidence            445554444443324566666666677777888888888899999988643   1 2 222   233333 4 6899988


Q ss_pred             eCC
Q psy9602         229 HIP  231 (239)
Q Consensus       229 N~P  231 (239)
                      +.+
T Consensus        85 ~~~   87 (259)
T cd01542          85 GQD   87 (259)
T ss_pred             ecc
Confidence            875

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=83.38  E-value=15  Score=37.30  Aligned_cols=97  Identities=18%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC--C---CCHHHHHHHHHHHHhCCCCEEE
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG--G---TCFQEVVELAKHAESLNVHAVL  194 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg--~---~St~eAIelar~A~~aGAdaVl  194 (239)
                      ++...+.|.+++ ++-+..+.     +    -++..++.++.....+.+.++  .   .+.+..+++++.+.++|||.+.
T Consensus       102 v~~A~~~Gvd~irif~~lnd~-----~----n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~  172 (592)
T PRK09282        102 VEKAAENGIDIFRIFDALNDV-----R----NMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSIC  172 (592)
T ss_pred             HHHHHHCCCCEEEEEEecChH-----H----HHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            444566666654 66666664     1    222233333221334443332  1   2578999999999999999998


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      +-......  ++.++.+.++.|.+.. ++||-++-
T Consensus       173 i~Dt~G~~--~P~~~~~lv~~lk~~~-~~pi~~H~  204 (592)
T PRK09282        173 IKDMAGLL--TPYAAYELVKALKEEV-DLPVQLHS  204 (592)
T ss_pred             ECCcCCCc--CHHHHHHHHHHHHHhC-CCeEEEEE
Confidence            88765532  7899999999999998 68887653

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=83.37  E-value=13  Score=31.77  Aligned_cols=61  Identities=11%  Similarity=0.227  Sum_probs=41.5

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +.-+++..+..+.+...+..+...+.++|++++.+..   . +.+.+   ++.+.+ . ++|++++|.+.
T Consensus        29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~---~-~~~~~---~~~~~~-~-~ipvV~i~~~~   89 (269)
T cd06281          29 GYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD---E-RDPEL---VDALAS-L-DLPIVLLDRDM   89 (269)
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC---C-CcHHH---HHHHHh-C-CCCEEEEeccc
Confidence            4566666677778778888888888899999998642   1 22333   333333 4 78999998753

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=83.34  E-value=16  Score=34.59  Aligned_cols=108  Identities=20%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             HHHhhhhhcc-ccccccccCCC--CCccccceEEEeehhhHHH--HH----HHHhhHHhhhcCCCCEEEeccccCCcCCC
Q psy9602          74 RKRRRKRLRN-AHGEVVMIDPS--DLPKRAKWTIIITAGLLLL--TC----MLLVGITLRMAPIIDQMVNGTTGEGVSMT  144 (239)
Q Consensus        74 ~~~~~~~~~~-~~p~~~~iD~~--~l~~~~~W~iv~~A~~~~~--~~----~l~~~v~~~~~gg~glvV~GstGE~~sLT  144 (239)
                      .-=++.+|+. +.+++..+|-.  -|-+..+.-+.+.|+++..  +.    .++..   ..+.+. .+++++.+   +.|
T Consensus        34 ~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~Ara---A~~~gi-~~~lss~s---~~s  106 (344)
T cd02922          34 EAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARA---AGKHGI-LQMISTNA---SCS  106 (344)
T ss_pred             HHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCchHHHHHHHH---HHHcCC-CEEecCcc---cCC
Confidence            3345556665 66666666655  4566677777777777542  11    33222   111222 24454444   336


Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEecC-CCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQIG-GTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaGVg-~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      .||       +++.... ..|.++++. ..+-....++.+.|+++|++++++.
T Consensus       107 ~e~-------v~~~~~~-~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvlt  151 (344)
T cd02922         107 LEE-------IVDARPP-DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLT  151 (344)
T ss_pred             HHH-------HHHhcCC-CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            665       2233232 368888885 4466777889999999999999996

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia

Probab=83.31  E-value=11  Score=31.86  Aligned_cols=73  Identities=14%  Similarity=0.177  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++-+.+++...+..++.-....+...-.+..+.....++|++++.|+.   . + .   ..++.+.+.  ++|+++.
T Consensus        15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~-~-~---~~~~~l~~~--~ipvV~~   84 (265)
T cd06299          15 ASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE---Q-S-A---EQLEDLLKR--GIPVVFV   84 (265)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC---C-C-h---HHHHHHHhC--CCCEEEE
Confidence            334444433333224555554444566666677778888888998888643   1 2 1   235666553  6888888


Q ss_pred             eCC
Q psy9602         229 HIP  231 (239)
Q Consensus       229 N~P  231 (239)
                      |.+
T Consensus        85 ~~~   87 (265)
T cd06299          85 DRE   87 (265)
T ss_pred             ecc
Confidence            874

This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans

>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=83.30  E-value=14  Score=31.74  Aligned_cols=60  Identities=8%  Similarity=0.004  Sum_probs=44.0

Q ss_pred             ceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         164 FTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       164 vpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +.+++.-+..+.++..+..+.....++|++++.|..      ...+...++.+.+ . ++||+++|.+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~------~~~~~~~i~~~~~-~-gIpvV~~d~~   94 (274)
T cd06311          35 VEFILVTASNDTEQQNAQQDLLINRKIDALVILPFE------SAPLTQPVAKAKK-A-GIFVVVVDRG   94 (274)
T ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------chhhHHHHHHHHH-C-CCeEEEEcCC
Confidence            567776666677778888888898999999998642      1334455666655 4 7999999875

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs

Probab=83.17  E-value=13  Score=31.64  Aligned_cols=60  Identities=17%  Similarity=0.195  Sum_probs=41.2

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +.-+++..+..+.....+..+.....++|++++.|...  .   ...   ++.+.+ . +.|++++|.+.
T Consensus        29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~--~---~~~---~~~~~~-~-~ipvV~~~~~~   88 (264)
T cd06274          29 GYQLLIACSDDDPETERETVETLIARQVDALIVAGSLP--P---DDP---YYLCQK-A-GLPVVALDRPG   88 (264)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--c---hHH---HHHHHh-c-CCCEEEecCcc
Confidence            35566655566677777888888889999999987531  1   222   445544 4 68999999864

Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor

>PF08254 Leader_Thr: Threonine leader peptide; InterPro: IPR011720 This family consists of examples of the threonine biosynthesis (thr) operon leader peptide, also called the thr operon attenuator

Probab=83.15  E-value=1.3  Score=26.00  Aligned_cols=17  Identities=59%  Similarity=0.769  Sum_probs=10.5

Q ss_pred             CceeEEEEEEEeecCCCC
Q psy9602           1 METTITTVTTITTGGGSG   18 (239)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~   18 (239)
                      |-|||.|-+ +|||-|.|
T Consensus         6 l~ttiitt~-~ttgngag   22 (22)
T PF08254_consen    6 LITTIITTT-TTTGNGAG   22 (22)
T ss_pred             eeeEEEEEE-EecccCCC
Confidence            346666544 48888765

The small gene for this peptide is often missed in genome annotation. It should be looked for in genomes of the proteobacteria, immediately upstream of genes for threonine biosynthesis, typically aspartokinase I/homoserine dehydrogenase, homoserine kinase, and threonine synthase. Transcription of the rest of the Thr operon is attenuated (mostly turned off) unless the ribosome pauses during a stretch of the leader sequence rich in both Ile (made from Thr) and in Thr itself because of the scarcity of those amino acids at the time. The leader peptide itself, once made, may have no role other than to be degraded. Similar systems exist for some other amino acid biosynthetic operons, such as Trp.; GO: 0009088 threonine biosynthetic process, 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=83.01  E-value=7.9  Score=35.23  Aligned_cols=86  Identities=15%  Similarity=0.111  Sum_probs=59.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEE--ec------CCCCHHHHHHHHHHHHhCCCCEEEECC------CCCCCCCCH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMV--QI------GGTCFQEVVELAKHAESLNVHAVLCLP------ELFFTPASV  206 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIa--GV------g~~St~eAIelar~A~~aGAdaVlV~P------P~y~~~~s~  206 (239)
                      ..|+.++|.++++.+.+.    ...|+.  |.      ...++.+-|++++...++||+.||+-.      --.+.. ..
T Consensus        95 ~~i~~~~~~rlI~~~~~~----g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~-~g  169 (237)
T TIGR03849        95 MEISLEERCNLIERAKDN----GFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDE-KG  169 (237)
T ss_pred             cCCCHHHHHHHHHHHHhC----CCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCC-CC
Confidence            459999999999999875    122222  22      135678999999999999999999987      222333 22


Q ss_pred             HHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         207 EDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       207 e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +--.+-...|++.. ++.=++|..|.
T Consensus       170 ~~r~d~v~~i~~~l-~~eklifEAp~  194 (237)
T TIGR03849       170 NVKEDELDVLAENV-DINKVIFEAPQ  194 (237)
T ss_pred             CCchHHHHHHHhhC-ChhcEEEECCC
Confidence            33334455666677 57888888885

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=83.00  E-value=3.1  Score=37.99  Aligned_cols=66  Identities=24%  Similarity=0.260  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEec------------------CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHH
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQI------------------GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVE  207 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGV------------------g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e  207 (239)
                      +|..+.++.+++.    ++||+..+                  +....+++++.++..+++||+++.+--+    +  .+
T Consensus       114 ~~~~~~I~al~~a----gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----~--~~  183 (254)
T cd06557         114 AEVAETIRALVDA----GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV----P--AE  183 (254)
T ss_pred             HHHHHHHHHHHHc----CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C--HH
Confidence            3666667766653    68877222                  2223689999999999999999998743    2  12


Q ss_pred             HHHHHHHHHHhhCCCCcEE
Q psy9602         208 DLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       208 ~iv~yf~~VaeatpdLPIi  226 (239)
                          -.+.|.+++ ++|+|
T Consensus       184 ----~~~~i~~~v-~iP~i  197 (254)
T cd06557         184 ----LAKEITEAL-SIPTI  197 (254)
T ss_pred             ----HHHHHHHhC-CCCEE
Confidence                456777888 68876

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated

Probab=82.98  E-value=11  Score=34.55  Aligned_cols=57  Identities=11%  Similarity=0.012  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCCCCC-CCHHHHH----HHHHHHHhhCCCCcEEEEeCC
Q psy9602         175 FQEVVELAKHAESLNVHAVLCLPELFFTP-ASVEDLV----DYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       175 t~eAIelar~A~~aGAdaVlV~PP~y~~~-~s~e~iv----~yf~~VaeatpdLPIiLYN~P  231 (239)
                      ++-.+++++...++|||++.+..|..... .+++...    -|++.+.+.....+++++.+.
T Consensus       179 ~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG  240 (339)
T PRK06252        179 TDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICG  240 (339)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECC
Confidence            34457788888899999999998864321 2555554    556888888732266666553

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=82.72  E-value=10  Score=34.81  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC----CCCHHHHHHHHHHHHh-CCCCEEEECCCCCCCCCCHHHHHHHHH
Q psy9602         140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG----GTCFQEVVELAKHAES-LNVHAVLCLPELFFTPASVEDLVDYLR  214 (239)
Q Consensus       140 ~~sLT~eER~~li~~vve~~~G~rvpVIaGVg----~~St~eAIelar~A~~-aGAdaVlV~PP~y~~~~s~e~iv~yf~  214 (239)
                      ...+|.+|-...++.++..++  .-+|++-..    ..|.+++++.+....+ +||++|-+-        +.+++.+..+
T Consensus        55 t~~vtl~em~~h~~~V~r~~~--~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiE--------dg~~~~~~I~  124 (264)
T PRK00311         55 TLPVTLDDMIYHTKAVARGAP--RALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLE--------GGEEVAETIK  124 (264)
T ss_pred             CCCcCHHHHHHHHHHHHhcCC--CCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEc--------CcHHHHHHHH
Confidence            347899999999999998764  235777443    3466888888665555 999999887        3367888888


Q ss_pred             HHHhhCCCCcEE
Q psy9602         215 DVGEAAPATPLF  226 (239)
Q Consensus       215 ~VaeatpdLPIi  226 (239)
                      .+.++  ++||+
T Consensus       125 al~~a--gIpV~  134 (264)
T PRK00311        125 RLVER--GIPVM  134 (264)
T ss_pred             HHHHC--CCCEe
Confidence            88876  79997

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=82.71  E-value=4.2  Score=37.14  Aligned_cols=79  Identities=13%  Similarity=0.236  Sum_probs=53.5

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC--CCCCC----H
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF--FTPAS----V  206 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y--~~~~s----~  206 (239)
                      ..|.||+-..+. ++-.++++.+.+.+   +.||++|.|=.+.+++    +.+.+.|||++++-.-..  +...+    .
T Consensus       176 ~~GvTG~~~~~~-~~~~~~i~~ir~~t---~~Pi~vGFGI~~~e~~----~~~~~~GADGvVVGSalv~~i~~~~~~~~~  247 (263)
T CHL00200        176 TTGVTGLKTELD-KKLKKLIETIKKMT---NKPIILGFGISTSEQI----KQIKGWNINGIVIGSACVQILLGSSPEKGL  247 (263)
T ss_pred             CCCCCCCCcccc-HHHHHHHHHHHHhc---CCCEEEECCcCCHHHH----HHHHhcCCCEEEECHHHHHHHHhcChhhHH
Confidence            589999986664 55678888888755   5799999998776654    456778999999986431  11001    2


Q ss_pred             HHHHHHHHHHHhh
Q psy9602         207 EDLVDYLRDVGEA  219 (239)
Q Consensus       207 e~iv~yf~~Vaea  219 (239)
                      +.+.+|.+.+.++
T Consensus       248 ~~~~~~~~~~~~~  260 (263)
T CHL00200        248 DQLSEFCKVAKKS  260 (263)
T ss_pred             HHHHHHHHHHHHH
Confidence            4566666666443

>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=82.67  E-value=13  Score=31.64  Aligned_cols=59  Identities=10%  Similarity=0.095  Sum_probs=41.4

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +.-+++..+..+.....+..+.....++|++++.++..    +.+    .++.+.+ . ++|+++.|.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~----~~~----~~~~~~~-~-~iPvv~~~~~   87 (265)
T cd06285          29 GYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARS----DDH----FLDELTR-R-GVPFVLVLRH   87 (265)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----ChH----HHHHHHH-c-CCCEEEEccC
Confidence            34556666667777888888888999999999986531    222    2555544 4 6899998875

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=82.61  E-value=11  Score=32.53  Aligned_cols=80  Identities=11%  Similarity=-0.072  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      -.++++.+.+..   ++||+++-+-.+.+++.+..    +.|+|+|++........ ... .-..++......+.  -..
T Consensus       144 ~~~~i~~i~~~~---~~Pvi~~GGI~~~~~v~~~l----~~GadgV~vgS~l~~~~-e~~-~~~~~~~~~~~~~~--~~~  212 (236)
T cd04730         144 TFALVPEVRDAV---DIPVIAAGGIADGRGIAAAL----ALGADGVQMGTRFLATE-ESG-ASPAYKQALLAATA--EDT  212 (236)
T ss_pred             HHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHH----HcCCcEEEEchhhhcCc-ccC-CCHHHHHHHHcCCC--CCe
Confidence            356666666655   47998855544434444433    47999999998776544 222 22233333333312  122


Q ss_pred             EeCCCCccccC
Q psy9602         228 YHIPMFTRVTL  238 (239)
Q Consensus       228 YN~P~~TG~~L  238 (239)
                      -.-|..||+.+
T Consensus       213 ~~~~~~~~~~~  223 (236)
T cd04730         213 VLTRAFSGRPA  223 (236)
T ss_pred             EEEeccCCCcc
Confidence            24556677654

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=82.56  E-value=9.1  Score=36.51  Aligned_cols=83  Identities=13%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHHHhcC---CCceEEEecC-----------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH-
Q psy9602         144 TTAERKLNLEAWMTEAKT---HGFTVMVQIG-----------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVED-  208 (239)
Q Consensus       144 T~eER~~li~~vve~~~G---~rvpVIaGVg-----------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~-  208 (239)
                      |.+-|.+++..+++.+..   .+.||.+=++           +.+.++++++++..++.|+|.+-+....++.+ ..+. 
T Consensus       189 slenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~-~~~~~  267 (361)
T cd04747         189 SLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEP-EFEGS  267 (361)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCC-CcCcc
Confidence            556777666655554433   1467776333           35778999999999999999998865432222 1000 


Q ss_pred             HHHHHHHHHhhCCCCcEEEE
Q psy9602         209 LVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       209 iv~yf~~VaeatpdLPIiLY  228 (239)
                      -..+-..+-+.. ++||+.=
T Consensus       268 ~~~~~~~~k~~~-~~pv~~~  286 (361)
T cd04747         268 ELNLAGWTKKLT-GLPTITV  286 (361)
T ss_pred             chhHHHHHHHHc-CCCEEEE
Confidence            122224455666 7898873

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=82.56  E-value=9.7  Score=36.42  Aligned_cols=54  Identities=17%  Similarity=0.140  Sum_probs=41.6

Q ss_pred             cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602         138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC  195 (239)
Q Consensus       138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV  195 (239)
                      |....-..+.-.++++.+.+.+   ++||++=++. +..+..++++.++++|+|++.+
T Consensus       146 g~~~~~~~~~~~~i~~~v~~~~---~~Pv~vKl~p-~~~~~~~~a~~~~~~Gadgi~~  199 (420)
T PRK08318        146 GSAVGQVPELVEMYTRWVKRGS---RLPVIVKLTP-NITDIREPARAAKRGGADAVSL  199 (420)
T ss_pred             cccccCCHHHHHHHHHHHHhcc---CCcEEEEcCC-CcccHHHHHHHHHHCCCCEEEE
Confidence            3444456677778888887764   5899998875 4455889999999999999995

>PRK10355 xylF D-xylose transporter subunit XylF; Provisional

Probab=82.47  E-value=18  Score=33.04  Aligned_cols=78  Identities=12%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      =+..+++-+.+++...+.-+++..+..+.+...+..+.....++|++++.+.      +.+....+++.+.++  ++|++
T Consensus        39 f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~------~~~~~~~~l~~~~~~--~iPvV  110 (330)
T PRK10355         39 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY------NGQVLSNVIKEAKQE--GIKVL  110 (330)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC------ChhhHHHHHHHHHHC--CCeEE
Confidence            3445555554444433467777777778888888899999999999999852      223334556666554  69999


Q ss_pred             EEeCCC
Q psy9602         227 YYHIPM  232 (239)
Q Consensus       227 LYN~P~  232 (239)
                      ++|.+.
T Consensus       111 ~id~~~  116 (330)
T PRK10355        111 AYDRMI  116 (330)
T ss_pred             EECCCC
Confidence            999753

>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=82.41  E-value=22  Score=30.27  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT  223 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL  223 (239)
                      +..=+..+++.+.+.+...+..+++.-+..+.....+..+.+...++|++++.|..   .   +.....++.+.+ . ++
T Consensus        10 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~---~---~~~~~~l~~~~~-~-~i   81 (277)
T cd06319          10 RIPFWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTN---S---SAAVTLLKLAAQ-A-KI   81 (277)
T ss_pred             CchHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCc---h---hhhHHHHHHHHH-C-CC
Confidence            33445666666666655435666666566677777788888888899999987532   1   112233444443 4 79


Q ss_pred             cEEEEeCC
Q psy9602         224 PLFYYHIP  231 (239)
Q Consensus       224 PIiLYN~P  231 (239)
                      |++++|.+
T Consensus        82 pvV~~~~~   89 (277)
T cd06319          82 PVVIADIG   89 (277)
T ss_pred             CEEEEecC
Confidence            99999875

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins

Probab=82.36  E-value=5.4  Score=33.24  Aligned_cols=58  Identities=9%  Similarity=0.004  Sum_probs=48.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhc-CCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         141 VSMTTAERKLNLEAWMTEAK-THGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~-G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      ..++..||+++++.++.... + .+.++-.+...+.+++.++.+.+.+.|.+|+|+-.|.
T Consensus       100 ~~~p~~eR~~~L~~~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~d  158 (174)
T cd07896         100 AKGPFEERLERLKNLLEKIPNP-HIKIVPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPD  158 (174)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCC-cEEEEeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCC
Confidence            67899999999999997652 3 4566666677889999999999999999999998655

The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=82.30  E-value=6.2  Score=37.85  Aligned_cols=81  Identities=12%  Similarity=0.048  Sum_probs=58.3

Q ss_pred             cC-CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHh--CCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602         141 VS-MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES--LNVHAVLCLPELFFTPASVEDLVDYLRDVG  217 (239)
Q Consensus       141 ~s-LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~--aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va  217 (239)
                      +. ++.|||.+.++.+.....+ ++-|-+|+...+.    +.++...+  +|+|.+.+-.-+.    ..+.+++..+.|-
T Consensus        76 Hk~~~~e~~~~fv~~~~~~~~~-~~~vavG~~~~d~----er~~~L~~~~~g~D~iviD~AhG----hs~~~i~~ik~ik  146 (346)
T PRK05096         76 HKHYSVEEWAAFVNNSSADVLK-HVMVSTGTSDADF----EKTKQILALSPALNFICIDVANG----YSEHFVQFVAKAR  146 (346)
T ss_pred             ecCCCHHHHHHHHHhccccccc-eEEEEecCCHHHH----HHHHHHHhcCCCCCEEEEECCCC----cHHHHHHHHHHHH
Confidence            44 8999999999987765555 5555555555443    44444444  6999999987775    4467788888888


Q ss_pred             hhCCCCcEEEEeC
Q psy9602         218 EAAPATPLFYYHI  230 (239)
Q Consensus       218 eatpdLPIiLYN~  230 (239)
                      +..|+++||.=|.
T Consensus       147 ~~~P~~~vIaGNV  159 (346)
T PRK05096        147 EAWPDKTICAGNV  159 (346)
T ss_pred             HhCCCCcEEEecc
Confidence            8889999987775

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=82.26  E-value=5.1  Score=36.22  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=43.6

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      +.|.||+-..+.. +-.+.++.+.+..   +.||++|.|=.+.+++    +.+.++|||++++-.-.
T Consensus       172 ~~G~TG~~~~~~~-~~~~~i~~lr~~~---~~pi~vgfGI~~~e~~----~~~~~~GADgvVvGSai  230 (256)
T TIGR00262       172 RAGVTGARNRAAS-ALNELVKRLKAYS---AKPVLVGFGISKPEQV----KQAIDAGADGVIVGSAI  230 (256)
T ss_pred             CCCCCCCcccCCh-hHHHHHHHHHhhc---CCCEEEeCCCCCHHHH----HHHHHcCCCEEEECHHH
Confidence            5789998766653 4677777777765   4699999887666554    45778899999998643

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=82.16  E-value=23  Score=32.61  Aligned_cols=96  Identities=13%  Similarity=-0.024  Sum_probs=58.4

Q ss_pred             ccCCcCCCHHHH----HHHHHHHHHHhcCCCceEEEecCCCCHH-HHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH
Q psy9602         137 TGEGVSMTTAER----KLNLEAWMTEAKTHGFTVMVQIGGTCFQ-EVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD  211 (239)
Q Consensus       137 tGE~~sLT~eER----~~li~~vve~~~G~rvpVIaGVg~~St~-eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~  211 (239)
                      .++...+-....    .++++.+.+. .+ |.--.+.+--.+.+ .+.|+-+.+.+.|..++.+.|..-....++..+..
T Consensus        71 ~~~~~~~~d~~~~~~nd~~a~~~~~~-pd-rf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~p  148 (293)
T COG2159          71 MGEVAIIPDLRRALANDDLAALAAEY-PD-RFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYP  148 (293)
T ss_pred             cccccchHHHhhhhhhHHHHHHHhhC-Cc-ceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHH
Confidence            444444444333    3555555553 33 44444444444434 44455556666899999999987543326666777


Q ss_pred             HHHHHHhhCCCCcEEEEeCCCCccc
Q psy9602         212 YLRDVGEAAPATPLFYYHIPMFTRV  236 (239)
Q Consensus       212 yf~~VaeatpdLPIiLYN~P~~TG~  236 (239)
                      .|+...+.  ++||+++.=+...+.
T Consensus       149 i~~~a~~~--gvpv~ihtG~~~~~~  171 (293)
T COG2159         149 IYEAAEEL--GVPVVIHTGAGPGGA  171 (293)
T ss_pred             HHHHHHHc--CCCEEEEeCCCCCCc
Confidence            77777664  899999877655543

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type

Probab=82.13  E-value=21  Score=35.42  Aligned_cols=96  Identities=14%  Similarity=0.017  Sum_probs=71.1

Q ss_pred             CEEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602         130 DQMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFF  201 (239)
Q Consensus       130 glvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~  201 (239)
                      .+-++..+++.+     ..|.+|-.+.+..+++.+......|.++.   +..+.+.++++++.+.++||+.+.+..-..+
T Consensus        92 ~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~  171 (494)
T TIGR00973        92 RIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGY  171 (494)
T ss_pred             EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence            355777777654     67888888877777777665334555544   3567889999999999999998887766543


Q ss_pred             CCCCHHHHHHHHHHHHhhCCC---CcEEE
Q psy9602         202 TPASVEDLVDYLRDVGEAAPA---TPLFY  227 (239)
Q Consensus       202 ~~~s~e~iv~yf~~Vaeatpd---LPIiL  227 (239)
                      .  +++++.+.++.+.+..|+   +||-+
T Consensus       172 ~--~P~~~~~~i~~l~~~~~~~~~v~l~~  198 (494)
T TIGR00973       172 A--LPAEYGNLIKGLRENVPNIDKAILSV  198 (494)
T ss_pred             C--CHHHHHHHHHHHHHhhccccCceEEE
Confidence            3  789999999999988763   44554

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=82.10  E-value=18  Score=32.52  Aligned_cols=65  Identities=23%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             CceEEEecC----CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH---HHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIG----GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL---VDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg----~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i---v~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +..||+.--    ..+.++..+..+.+++.|||.+=+.-..-    +.++.   +.....+.+..++.|++.|+.=
T Consensus       135 ~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~----~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG  206 (253)
T PRK02412        135 GVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQ----SEQDVLTLLNATREMKELYADQPLITMSMG  206 (253)
T ss_pred             CCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCC----CHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence            578887552    34557888999999999999876663221    34444   4444444433237899999863

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=81.98  E-value=21  Score=35.50  Aligned_cols=100  Identities=8%  Similarity=0.016  Sum_probs=62.9

Q ss_pred             HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602         121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLP  197 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~P  197 (239)
                      ++...+.|.+++-...     .|++.+-.+..-..+...+. .+-+.++..   ..+.+-.+++++.++++|||.+.+..
T Consensus       111 v~~a~~~Gidi~Rifd-----~lnd~~n~~~ai~~ak~~G~-~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkD  184 (468)
T PRK12581        111 ISLSAQNGIDVFRIFD-----ALNDPRNIQQALRAVKKTGK-EAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKD  184 (468)
T ss_pred             HHHHHHCCCCEEEEcc-----cCCCHHHHHHHHHHHHHcCC-EEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECC
Confidence            4455677777763322     56644333332223333222 222222221   12566688999999999999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         198 ELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       198 P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      .....  +++++.+.+++|-+.. ++||-++-
T Consensus       185 taG~l--~P~~v~~Lv~alk~~~-~~pi~~H~  213 (468)
T PRK12581        185 MAGIL--TPKAAKELVSGIKAMT-NLPLIVHT  213 (468)
T ss_pred             CCCCc--CHHHHHHHHHHHHhcc-CCeEEEEe
Confidence            66533  7899999999998865 89987653

>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily

Probab=81.87  E-value=17  Score=31.31  Aligned_cols=60  Identities=8%  Similarity=-0.098  Sum_probs=40.4

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +.-+++-.+. +.++.++..+.+...++|++++.++..      +.....++.+.+ . ++|++++|.+
T Consensus        29 g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~------~~~~~~~~~~~~-~-~iPvV~~~~~   88 (289)
T cd01540          29 GFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDV------KLGPAIVAKAKA-Y-NMKVVAVDDR   88 (289)
T ss_pred             CCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCch------hhhHHHHHHHHh-C-CCeEEEecCC
Confidence            3455554444 667777888888899999999987431      112334555555 4 7999999854

Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=81.80  E-value=30  Score=29.02  Aligned_cols=49  Identities=16%  Similarity=0.119  Sum_probs=29.9

Q ss_pred             HHHHHHHhCCCCEEEECCCCCC--CCC-CHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         180 ELAKHAESLNVHAVLCLPELFF--TPA-SVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       180 elar~A~~aGAdaVlV~PP~y~--~~~-s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +.+..|.+.|+|.+.+.|-+..  ++. ....-.+.++.+.+..+++||+.-
T Consensus       107 ~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~  158 (196)
T TIGR00693       107 EELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAI  158 (196)
T ss_pred             HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence            3345678899999998753321  110 011235778888776656888754

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=81.55  E-value=6  Score=34.51  Aligned_cols=92  Identities=16%  Similarity=0.100  Sum_probs=53.9

Q ss_pred             hcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC-----------CCHH-HHHHHHHHHHhCCCCE
Q psy9602         125 MAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG-----------TCFQ-EVVELAKHAESLNVHA  192 (239)
Q Consensus       125 ~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~-----------~St~-eAIelar~A~~aGAda  192 (239)
                      ++.|+..+++|+...-       ..++++.+++....  -.+++++..           .++. +.+++++.+.+.|++.
T Consensus        95 ~~~Ga~~v~iGs~~~~-------~~~~~~~i~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~  165 (241)
T PRK13585         95 LDLGVDRVILGTAAVE-------NPEIVRELSEEFGS--ERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGS  165 (241)
T ss_pred             HHcCCCEEEEChHHhh-------ChHHHHHHHHHhCC--CcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCE
Confidence            4566666777766532       12455666665532  234444432           1122 6788999999999999


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       193 VlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +++..-.--.. ...--.+.++.+++.+ ++||+.
T Consensus       166 i~~~~~~~~g~-~~g~~~~~i~~i~~~~-~iPvia  198 (241)
T PRK13585        166 ILFTNVDVEGL-LEGVNTEPVKELVDSV-DIPVIA  198 (241)
T ss_pred             EEEEeecCCCC-cCCCCHHHHHHHHHhC-CCCEEE
Confidence            99865311000 0011234578888888 799875

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=81.54  E-value=5.6  Score=35.34  Aligned_cols=83  Identities=14%  Similarity=0.149  Sum_probs=60.3

Q ss_pred             cCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Q psy9602         126 APII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA  204 (239)
Q Consensus       126 ~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~  204 (239)
                      +.|. .+++.+.+-++..--.  -.++++.+.+.+   ++|||++=+-.|.+++.++.+ ..+.|||++|+---.|....
T Consensus       157 ~~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~~---~ipviasGGi~s~~D~~~l~~-~~~~GvdgV~igra~~~g~~  230 (241)
T PRK14024        157 SAGCSRYVVTDVTKDGTLTGP--NLELLREVCART---DAPVVASGGVSSLDDLRALAE-LVPLGVEGAIVGKALYAGAF  230 (241)
T ss_pred             hcCCCEEEEEeecCCCCccCC--CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHhh-hccCCccEEEEeHHHHcCCC
Confidence            4444 5778888887765443  366777777765   589999888888888877643 23579999999988776665


Q ss_pred             CHHHHHHHHH
Q psy9602         205 SVEDLVDYLR  214 (239)
Q Consensus       205 s~e~iv~yf~  214 (239)
                      +.+++.++++
T Consensus       231 ~~~~~~~~~~  240 (241)
T PRK14024        231 TLPEALAVVR  240 (241)
T ss_pred             CHHHHHHHhc
Confidence            7777776643

>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase

Probab=81.40  E-value=9.1  Score=37.38  Aligned_cols=60  Identities=17%  Similarity=0.077  Sum_probs=45.1

Q ss_pred             CCcCCCHHHHHHHHHHHHHHh----cCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602         139 EGVSMTTAERKLNLEAWMTEA----KTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF  200 (239)
Q Consensus       139 E~~sLT~eER~~li~~vve~~----~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y  200 (239)
                      ...+-..+||...+..+++.+    +. +.-..+++++ ++.+.++.++.|++.|++++|+.+-.+
T Consensus       180 dq~~~p~~~Rv~~~~~a~~~a~~eTG~-~~~y~~NiT~-~~~em~~ra~~a~~~G~~~~mv~~~~~  243 (407)
T TIGR03332       180 ETGLAPFEKRITEGKEVLQEVYEQTGH-KTLYAVNLTG-RTFDLKDKAKRAAELGADVLLFNVFAY  243 (407)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCC-cceEeecCCC-CHHHHHHHHHHHHHhCCCEEEEecccc
Confidence            334566789988777766643    33 4556668886 467899999999999999999997443

Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).

>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli

Probab=81.32  E-value=16  Score=30.93  Aligned_cols=76  Identities=8%  Similarity=0.037  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +..+++-+.+.+.....-+++..+..+.++..+..+.....++|++++.+...    + ......+   .... ++|+++
T Consensus        14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~----~-~~~~~~l---~~~~-~ipvV~   84 (269)
T cd06275          14 FAEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEY----D-QPLLAML---ERYR-HIPMVV   84 (269)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCC----C-hHHHHHH---HhcC-CCCEEE
Confidence            34444444443332245666666677888888888888889999999987531    1 2222222   2334 799999


Q ss_pred             EeCCC
Q psy9602         228 YHIPM  232 (239)
Q Consensus       228 YN~P~  232 (239)
                      .|.+.
T Consensus        85 i~~~~   89 (269)
T cd06275          85 MDWGP   89 (269)
T ss_pred             Eeccc
Confidence            98853

Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=81.32  E-value=18  Score=35.31  Aligned_cols=62  Identities=10%  Similarity=0.056  Sum_probs=45.1

Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      ++|+.-....++.+.++...++|+|.+.+-.-+.    +.+.+.+.++.|-+..|+++||.=|...
T Consensus       143 ~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g----~~~~~~~~v~~ik~~~p~~~vi~g~V~T  204 (404)
T PRK06843        143 RVGAAVSIDIDTIERVEELVKAHVDILVIDSAHG----HSTRIIELVKKIKTKYPNLDLIAGNIVT  204 (404)
T ss_pred             EEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCC----CChhHHHHHHHHHhhCCCCcEEEEecCC
Confidence            3343333346689999999999999999755442    3366788888888888899998877643

>PRK14743 thrL thr operon leader peptide; Provisional

Probab=81.30  E-value=1.5  Score=26.62  Aligned_cols=17  Identities=71%  Similarity=0.900  Sum_probs=11.5

Q ss_pred             eeEEEEEEEeecCCCCCC
Q psy9602           3 TTITTVTTITTGGGSGRQ   20 (239)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~   20 (239)
                      |||.| +|||||-|.|..
T Consensus         8 ttiit-~t~ttgngag~~   24 (26)
T PRK14743          8 TTIIT-TTITTGNGAGXX   24 (26)
T ss_pred             EEEEE-EEEecCCccccc
Confidence            44433 578999988864

>PTZ00413 lipoate synthase; Provisional

Probab=81.25  E-value=17  Score=35.60  Aligned_cols=76  Identities=12%  Similarity=0.035  Sum_probs=54.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCc----eEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC---CCC-CCCCC---CHHHHHH
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGF----TVMVQIGGTCFQEVVELAKHAESLNVHAVLCL---PEL-FFTPA---SVEDLVD  211 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rv----pVIaGVg~~St~eAIelar~A~~aGAdaVlV~---PP~-y~~~~---s~e~iv~  211 (239)
                      -+.+++.++++.+.+..++ ++    -+|+|. +++.+|.+++++.+.++|+|.+-+-   .|. ...|.   =..+-++
T Consensus       275 atYe~sLe~Lr~AKe~f~~-gi~tcSGiIVGL-GET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~  352 (398)
T PTZ00413        275 ASYRQSLKVLEHVKEFTNG-AMLTKSSIMLGL-GETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFE  352 (398)
T ss_pred             CCHHHHHHHHHHHHHHhcC-CceEeeeeEecC-CCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHH
Confidence            4899999999999876333 33    568894 5699999999999999999999982   122 11110   1134566


Q ss_pred             HHHHHHhhC
Q psy9602         212 YLRDVGEAA  220 (239)
Q Consensus       212 yf~~Vaeat  220 (239)
                      .|+.++...
T Consensus       353 ~~~~~a~~~  361 (398)
T PTZ00413        353 MWEEEAMKM  361 (398)
T ss_pred             HHHHHHHHc
Confidence            777788776

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=81.20  E-value=18  Score=33.79  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=62.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCC--------CCCC-CHHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPELF--------FTPA-SVEDLV  210 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y--------~~~~-s~e~iv  210 (239)
                      .||.+|....++.++..+   .+||++=+  |-.+..++.+.++...++|+.++.+---.+        -+.. +.++..
T Consensus        59 ~l~~~e~~~~~~~I~~~~---~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~  135 (294)
T TIGR02319        59 FTSVSEQAINAKNIVLAV---DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMT  135 (294)
T ss_pred             CCCHHHHHHHHHHHHhcc---CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHH
Confidence            789999999999999887   58999944  333555588999999999999999965221        1112 778888


Q ss_pred             HHHHHHHhhCCCCcEEE
Q psy9602         211 DYLRDVGEAAPATPLFY  227 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiL  227 (239)
                      .-.++..++..+-+++|
T Consensus       136 ~kI~Aa~~A~~~~d~~I  152 (294)
T TIGR02319       136 GKIEAAVEAREDEDFTI  152 (294)
T ss_pred             HHHHHHHHhccCCCeEE
Confidence            88888888753444554

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed

Probab=81.16  E-value=11  Score=36.93  Aligned_cols=83  Identities=17%  Similarity=0.025  Sum_probs=55.8

Q ss_pred             HHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCC
Q psy9602         115 CMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLN  189 (239)
Q Consensus       115 ~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aG  189 (239)
                      +.++.-+.....||.+++=-= ......+...+||...+..+++.    ++. +.-..+++++. +++.++.++.|+++|
T Consensus       150 ~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~y~~NiT~~-~~em~~ra~~a~~~G  227 (407)
T PRK09549        150 DYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGH-KTLYAVNLTGR-TFELKEKAKRAAEAG  227 (407)
T ss_pred             HHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCC-cceEEEecCCC-HHHHHHHHHHHHHcC
Confidence            344333333445555554211 23456777889998777666654    433 45566688865 689999999999999


Q ss_pred             CCEEEECCCC
Q psy9602         190 VHAVLCLPEL  199 (239)
Q Consensus       190 AdaVlV~PP~  199 (239)
                      +.++|+.+-.
T Consensus       228 ~~~~m~~~~~  237 (407)
T PRK09549        228 ADALLFNVFA  237 (407)
T ss_pred             CCeEEEeccc
Confidence            9999999733

>PRK11303 DNA-binding transcriptional regulator FruR; Provisional

Probab=81.11  E-value=19  Score=31.94  Aligned_cols=74  Identities=12%  Similarity=0.205  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++.+.+.+...+..+++..+..+.+...+..+.....++|++++.+...  . . .   .+++.+.+ . ++|+++.
T Consensus        77 ~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~-~-~---~~~~~l~~-~-~iPvV~v  147 (328)
T PRK11303         77 ARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLP--P-E-H---PFYQRLQN-D-GLPIIAL  147 (328)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--C-C-h---HHHHHHHh-c-CCCEEEE
Confidence            3344444333332234555544455666666777777778899998875321  1 1 2   23455544 4 6899998


Q ss_pred             eCC
Q psy9602         229 HIP  231 (239)
Q Consensus       229 N~P  231 (239)
                      |.+
T Consensus       148 ~~~  150 (328)
T PRK11303        148 DRA  150 (328)
T ss_pred             CCC
Confidence            875

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=81.10  E-value=8  Score=36.19  Aligned_cols=62  Identities=15%  Similarity=0.138  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhcCCCceEE-EecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602         150 LNLEAWMTEAKTHGFTVM-VQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA  219 (239)
Q Consensus       150 ~li~~vve~~~G~rvpVI-aGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea  219 (239)
                      ++++.+.+.  . ++||+ +..|+- +.+++    ..+.++|||+|+|..-.+-.. +++.....|......
T Consensus       187 elLkei~~~--~-~iPVV~fAiGGI~TPedA----a~~melGAdGVaVGSaI~ks~-dP~~~akafv~ai~~  250 (287)
T TIGR00343       187 ELLLEVLKL--G-KLPVVNFAAGGVATPADA----ALMMQLGADGVFVGSGIFKSS-NPEKLAKAIVEATTH  250 (287)
T ss_pred             HHHHHHHHh--C-CCCEEEeccCCCCCHHHH----HHHHHcCCCEEEEhHHhhcCC-CHHHHHHHHHHHHHH
Confidence            556666654  2 68998 677777 44443    334458999999998666545 677777766665544

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK08185 hypothetical protein; Provisional

Probab=81.08  E-value=11  Score=35.04  Aligned_cols=97  Identities=18%  Similarity=0.146  Sum_probs=60.5

Q ss_pred             hhcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCC---C----HHH----HHHHHHHHH-hC
Q psy9602         124 RMAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGT---C----FQE----VVELAKHAE-SL  188 (239)
Q Consensus       124 ~~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~---S----t~e----AIelar~A~-~a  188 (239)
                      .++.|- .+++=||     .|+.+|-.++.+.+++.+...+++|=+  |.-+.   +    ..+    ..+.++... +.
T Consensus        87 ai~~Gf~SVM~D~S-----~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~T  161 (283)
T PRK08185         87 AIRCGFTSVMIDGS-----LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRT  161 (283)
T ss_pred             HHHcCCCEEEEeCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhh
Confidence            345443 4566665     589999999999999877654455533  22111   0    001    233344444 45


Q ss_pred             CCCEEEE-----CCCCCC--CCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         189 NVHAVLC-----LPELFF--TPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       189 GAdaVlV-----~PP~y~--~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      |+|++-+     ...|..  +| .-  -++.+++|.+.+ ++|++++=
T Consensus       162 gvD~LAvaiGt~HG~y~~~~kp-~L--~~e~l~~I~~~~-~iPLVlHG  205 (283)
T PRK08185        162 GVDTLAVAIGTAHGIYPKDKKP-EL--QMDLLKEINERV-DIPLVLHG  205 (283)
T ss_pred             CCCEEEeccCcccCCcCCCCCC-Cc--CHHHHHHHHHhh-CCCEEEEC
Confidence            9999998     444433  33 22  278888999998 89999863

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=81.06  E-value=9.7  Score=33.76  Aligned_cols=64  Identities=19%  Similarity=0.095  Sum_probs=49.1

Q ss_pred             ceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         164 FTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPELFF-TPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       164 vpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y~-~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +-.++|.  |...++.-+..++.|.+.|||.+-+..++.. +....+.+.+-..+|.+++.++|+.+
T Consensus        56 v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKv  122 (211)
T TIGR00126        56 ICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKV  122 (211)
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence            3344454  5677888889999999999999999988753 22278889999999999875566544

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=80.98  E-value=6.4  Score=34.82  Aligned_cols=60  Identities=7%  Similarity=0.005  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      +|++.+.+.    ++|++-|+.+.      ..+..|.+.|+|.+-+.|-..+      . .+|++.+..-.|++|++
T Consensus       100 ~v~~~~~~~----~i~~iPG~~T~------~E~~~A~~~Gad~vklFPa~~~------G-~~~ik~l~~~~p~ip~~  159 (213)
T PRK06552        100 ETAKICNLY----QIPYLPGCMTV------TEIVTALEAGSEIVKLFPGSTL------G-PSFIKAIKGPLPQVNVM  159 (213)
T ss_pred             HHHHHHHHc----CCCEECCcCCH------HHHHHHHHcCCCEEEECCcccC------C-HHHHHHHhhhCCCCEEE
Confidence            455555543    79999998753      3455667899999999662221      2 57788888888778877

>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []

Probab=80.93  E-value=11  Score=32.25  Aligned_cols=75  Identities=17%  Similarity=0.071  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHH-hCCCCEEEECCCCCCCCCCHHHHH-HHHHHHHhhCCCCcEEE
Q psy9602         150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAE-SLNVHAVLCLPELFFTPASVEDLV-DYLRDVGEAAPATPLFY  227 (239)
Q Consensus       150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~-~aGAdaVlV~PP~y~~~~s~e~iv-~yf~~VaeatpdLPIiL  227 (239)
                      .+++.+.+. .+ +....+.+.....+++++..+.+. +.|+.+|.+.|........+.... ..|+.+.+.  ++||++
T Consensus        60 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~~  135 (273)
T PF04909_consen   60 WLVELAAKH-PD-RFIGFAAIPPPDPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEEL--GLPVLI  135 (273)
T ss_dssp             HHHHHHHHS-TT-TEEEEEEETTTSHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHH--T-EEEE
T ss_pred             HHHHHHHHc-CC-CEEEEEEecCCCchhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhh--ccceee
Confidence            345454443 33 555666677778889999888888 899999999986653332455555 778777775  899998


Q ss_pred             E
Q psy9602         228 Y  228 (239)
Q Consensus       228 Y  228 (239)
                      +
T Consensus       136 H  136 (273)
T PF04909_consen  136 H  136 (273)
T ss_dssp             E
T ss_pred             e
Confidence            8

The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=80.91  E-value=3.1  Score=35.12  Aligned_cols=57  Identities=23%  Similarity=0.321  Sum_probs=40.7

Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC--CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF--FTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y--~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .++|++..+.++    ++.|.+.|+|.+.+.|-+.  .++....-=.+.|+.+.+.+ ++||+.
T Consensus        96 ~~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~-~~pv~A  154 (180)
T PF02581_consen   96 KIIGASCHSLEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS-PIPVYA  154 (180)
T ss_dssp             SEEEEEESSHHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT-SSCEEE
T ss_pred             eEEEeecCcHHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC-CCCEEE
Confidence            468999999988    6667799999999998543  22211112356788888888 689875

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>TIGR01464 hemE uroporphyrinogen decarboxylase

Probab=80.89  E-value=19  Score=33.16  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=36.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH----HHHHhhC----CCCcEEEE
Q psy9602         173 TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL----RDVGEAA----PATPLFYY  228 (239)
Q Consensus       173 ~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf----~~Vaeat----pdLPIiLY  228 (239)
                      ..++..+++++...++|||++++..|..-.. +++...+|+    +.|.++.    ++.|++.+
T Consensus       177 ~~t~~~~~~~~~~~eaGad~i~i~d~~~~~l-sp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~  239 (338)
T TIGR01464       177 KLTDATIEYLVEQVKAGAQAVQIFDSWAGAL-SPEDFEEFVLPYLKKIIEEVKARLPNVPVILF  239 (338)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEECCccccC-CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            3456677888888889999999887743222 667666444    5666653    34566543

This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=80.88  E-value=5  Score=38.45  Aligned_cols=81  Identities=14%  Similarity=0.073  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCC-C-------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGT-C-------FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA  220 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~-S-------t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat  220 (239)
                      +-+++.......+ ++|+|+-+++. +       ....+--++.|.++|||+|.++-  |+....+.+.+.-+..|++++
T Consensus       112 ~G~l~~~~~~~~~-~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv--y~Gs~~E~~ml~~l~~i~~ea  188 (348)
T PRK09250        112 LGVLEAVARKYAH-KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI--YFGSEESRRQIEEISEAFEEA  188 (348)
T ss_pred             HHHHHhccccccC-CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHH
Confidence            4456654433444 79999977653 1       23344458899999999999985  332214556666666665553


Q ss_pred             C--CCcEEEEeCCC
Q psy9602         221 P--ATPLFYYHIPM  232 (239)
Q Consensus       221 p--dLPIiLYN~P~  232 (239)
                      -  ++|+++.-||-
T Consensus       189 ~~~GlPlv~~~YpR  202 (348)
T PRK09250        189 HELGLATVLWSYLR  202 (348)
T ss_pred             HHhCCCEEEEeccc
Confidence            1  79999988885

>PRK05481 lipoyl synthase; Provisional

Probab=80.78  E-value=16  Score=33.48  Aligned_cols=81  Identities=12%  Similarity=0.024  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC---CCC-CCCC---CHHHHHHH
Q psy9602         142 SMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP---ELF-FTPA---SVEDLVDY  212 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P---P~y-~~~~---s~e~iv~y  212 (239)
                      ..|.+++.++++.+.+...|.  ..-+|+|. +++.++..+..+...++|.|.+-+.+   |.+ ..+.   -..+-.+.
T Consensus       176 ~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~  254 (289)
T PRK05481        176 GADYERSLELLKRAKELHPGIPTKSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDE  254 (289)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHH
Confidence            568999999999999885552  45689999 88999999999999999999999953   332 1011   23455667


Q ss_pred             HHHHHhhCCCCc
Q psy9602         213 LRDVGEAAPATP  224 (239)
Q Consensus       213 f~~VaeatpdLP  224 (239)
                      +..++... +.+
T Consensus       255 l~~~~~~i-~~~  265 (289)
T PRK05481        255 YKEIALEL-GFL  265 (289)
T ss_pred             HHHHHHHc-Cch
Confidence            77777776 443

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=80.72  E-value=8.2  Score=36.61  Aligned_cols=81  Identities=6%  Similarity=-0.035  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCc---eEEEec----------CCCCHHH-HHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         144 TTAERKLNLEAWMTEAKTHGF---TVMVQI----------GGTCFQE-VVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rv---pVIaGV----------g~~St~e-AIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      |.|-|.+++..+++.+.. .+   .|.+=+          ++.+.++ ++++++..++.|+|.+-|.-|.+...  ..-.
T Consensus       204 slENR~Rf~~Eiv~aVr~-~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~--~~~~  280 (362)
T PRK10605        204 SVENRARLVLEVVDAGIA-EWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG--EPYS  280 (362)
T ss_pred             cHHHHHHHHHHHHHHHHH-HcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC--cccc
Confidence            567777766666665443 21   233312          1356778 89999999999999999987644221  1112


Q ss_pred             HHHHHHHHhhCCCCcEEEE
Q psy9602         210 VDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiLY  228 (239)
                      ..+.+.|-+.+ +.||+.-
T Consensus       281 ~~~~~~ik~~~-~~pv~~~  298 (362)
T PRK10605        281 DAFREKVRARF-HGVIIGA  298 (362)
T ss_pred             HHHHHHHHHHC-CCCEEEe
Confidence            34457777778 7888764

>TIGR02077 thr_lead_pep thr operon leader peptide

Probab=80.61  E-value=2  Score=26.26  Aligned_cols=18  Identities=67%  Similarity=0.822  Sum_probs=14.5

Q ss_pred             eeEEEEEEEeecCCCCCC
Q psy9602           3 TTITTVTTITTGGGSGRQ   20 (239)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~   20 (239)
                      +++++-|||+||-|.|..
T Consensus         7 ttt~~TtT~ttgngAG~~   24 (26)
T TIGR02077         7 TTTTTTTTITTGNGAGXX   24 (26)
T ss_pred             EEEEEEEEEEeccccccc
Confidence            567777899999998864

This family consists of examples of the threonine biosynthesis (thr) operon leader peptide, also called the thr operon attenuator. The small gene for this peptide is often missed in genome annotation. It should be looked for in genomes of the proteobacteria, immediately upstream of genes for threonine biosynthesis, typically aspartokinase I/homoserine dehydrogenase, homoserine kinase, and threonine synthase. Transcription of the rest of the Thr operon is attenuated (mostly turned off) unless the ribosome pauses during a stretch of the leader sequence rich in both Ile (made from Thr) and in Thr itself because of the scarcity of those amino acids at the time. The leader peptide itself, once made, may have no role other than to be degraded. Similar systems exist for some other amino acid biosynthetic operons, such as Trp.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=80.49  E-value=4.2  Score=37.13  Aligned_cols=64  Identities=23%  Similarity=0.286  Sum_probs=45.4

Q ss_pred             cCCCceEEEecCCCC--------HHHHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         160 KTHGFTVMVQIGGTC--------FQEVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       160 ~G~rvpVIaGVg~~S--------t~eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      .+ ++.||+-+--.|        ..+..++++.+++.||+++.|+. |.||..     =.+++..+..++ ++|++-=|+
T Consensus        45 ~~-~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~G-----s~~dL~~v~~~~-~~PvL~KDF  117 (254)
T PF00218_consen   45 EG-RISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVLTEPKFFGG-----SLEDLRAVRKAV-DLPVLRKDF  117 (254)
T ss_dssp             TS-S-EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE--SCCCHH-----HHHHHHHHHHHS-SS-EEEES-
T ss_pred             CC-CCeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEECCCCCCCC-----CHHHHHHHHHHh-CCCcccccC
Confidence            45 788998764333        25889999999999999999987 667754     667888888888 899987554

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=80.37  E-value=11  Score=34.35  Aligned_cols=51  Identities=16%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         176 QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       176 ~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      +++-+.++.+.+.|.|++|+-=.-  .- +.+.+.+-.+.|.+.+ ++||+|+-.
T Consensus        28 ~~~~ei~~~~~~~GTDaImIGGS~--gv-t~~~~~~~v~~ik~~~-~lPvilfP~   78 (240)
T COG1646          28 EEADEIAEAAAEAGTDAIMIGGSD--GV-TEENVDNVVEAIKERT-DLPVILFPG   78 (240)
T ss_pred             cccHHHHHHHHHcCCCEEEECCcc--cc-cHHHHHHHHHHHHhhc-CCCEEEecC
Confidence            778899999999999999998422  22 6789999999999888 999999743

>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor

Probab=80.29  E-value=17  Score=32.23  Aligned_cols=73  Identities=8%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      ++++.+.+.+...+..+++.....+.+...+..+.....++|++++.|...  . . +   .+++.+.+ . ++|++++|
T Consensus        77 ~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~-~-~---~~~~~l~~-~-~iPvV~~~  147 (327)
T TIGR02417        77 RIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMP--P-E-D---AYYQKLQN-E-GLPVVALD  147 (327)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC--C-C-h---HHHHHHHh-c-CCCEEEEc
Confidence            344444443332245666655555666666777777888999998876421  1 1 2   23455544 4 69999998


Q ss_pred             CC
Q psy9602         230 IP  231 (239)
Q Consensus       230 ~P  231 (239)
                      .+
T Consensus       148 ~~  149 (327)
T TIGR02417       148 RS  149 (327)
T ss_pred             cc
Confidence            75

Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.

>PRK08227 autoinducer 2 aldolase; Validated

Probab=80.27  E-value=8.7  Score=35.34  Aligned_cols=64  Identities=9%  Similarity=0.049  Sum_probs=49.4

Q ss_pred             HHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Q psy9602         151 NLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGE  218 (239)
Q Consensus       151 li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vae  218 (239)
                      -++.+++.+   .+||++ |=...+.++.+++++.|.++||.++.+-=..|..+ ++..+.+-+..|.-
T Consensus       183 ~f~~vv~a~---~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~-~p~~~~~al~~IVh  247 (264)
T PRK08227        183 GFERITAGC---PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSE-HPVAMIKAVHAVVH  247 (264)
T ss_pred             HHHHHHHcC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccC-CHHHHHHHHHHHHh
Confidence            344555533   678876 44444789999999999999999999998888877 88888877777653

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=80.19  E-value=25  Score=29.95  Aligned_cols=59  Identities=14%  Similarity=0.164  Sum_probs=41.5

Q ss_pred             eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      -+++.-+..+.....+..+.+.+.++|++++.+..      .+.+...+..+.+ . ++|++++|.+
T Consensus        36 ~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~------~~~~~~~l~~~~~-~-~iPvv~~~~~   94 (272)
T cd06300          36 EFIVTSADGDVAQQIADIRNLIAQGVDAIIINPAS------PTALNPVIEEACE-A-GIPVVSFDGT   94 (272)
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------hhhhHHHHHHHHH-C-CCeEEEEecC
Confidence            45666666777888888888888899999998632      1223344555554 4 6899998865

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation

Probab=80.14  E-value=17  Score=30.69  Aligned_cols=74  Identities=8%  Similarity=0.040  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ...+++.+.+.+...+.-+++-.+..+.+...+..+...+.++|++++.++.   . + +.+..   .+. .. ++|+++
T Consensus        14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~---~-~-~~~~~---~l~-~~-~ipvV~   83 (268)
T cd06298          14 FAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK---I-S-EEHRE---EFK-RS-PTPVVL   83 (268)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCC---C-c-HHHHH---HHh-cC-CCCEEE
Confidence            3344444433332223445544556667777777777778899999987532   1 2 23333   333 34 789999


Q ss_pred             EeCC
Q psy9602         228 YHIP  231 (239)
Q Consensus       228 YN~P  231 (239)
                      +|..
T Consensus        84 ~~~~   87 (268)
T cd06298          84 AGSV   87 (268)
T ss_pred             Eccc
Confidence            8864

Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=80.13  E-value=11  Score=32.63  Aligned_cols=72  Identities=11%  Similarity=0.049  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC--CCHHHHHHHHHHHHhhCCCC
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP--ASVEDLVDYLRDVGEAAPAT  223 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~--~s~e~iv~yf~~VaeatpdL  223 (239)
                      ++..++++.+.+.  . .+++++++.  +.+    .++.+++.|+|.+.+..-.+...  .......++.+.+.+.+ ++
T Consensus       105 ~~~~~~i~~~~~~--~-~i~vi~~v~--t~e----e~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~i  174 (221)
T PRK01130        105 ETLAELVKRIKEY--P-GQLLMADCS--TLE----EGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-GC  174 (221)
T ss_pred             CCHHHHHHHHHhC--C-CCeEEEeCC--CHH----HHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-CC
Confidence            4556777777765  3 689888765  334    35678999999987642111000  01122367888888888 78


Q ss_pred             cEEE
Q psy9602         224 PLFY  227 (239)
Q Consensus       224 PIiL  227 (239)
                      ||+.
T Consensus       175 Pvia  178 (221)
T PRK01130        175 PVIA  178 (221)
T ss_pred             CEEE
Confidence            9875

>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation

Probab=80.08  E-value=22  Score=30.14  Aligned_cols=59  Identities=8%  Similarity=0.139  Sum_probs=38.2

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +.-+++.....+.+.-.+..+.....++|++++.++..    +.    ..++.+.+ . ++|++++|.+
T Consensus        29 g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~----~~----~~~~~~~~-~-~ipvV~i~~~   87 (270)
T cd06296          29 GYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPEL----TS----AQRAALRR-T-GIPFVVVDPA   87 (270)
T ss_pred             CCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCC----Ch----HHHHHHhc-C-CCCEEEEecc
Confidence            34555555555566666777777778899998887541    21    12555544 3 7899998865

This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
2r91_A	286	Crystal Structure Of Kd(P)ga From T.Tenax Length =		3e-07
1w3i_A	293	Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kd		3e-06
1w37_A	294	2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus		3e-06
2yda_A	294	Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Ald		4e-06
4ahp_A	298	Crystal Structure Of Wild Type N-acetylneuraminic A		1e-05
4ah7_A	298	Structure Of Wild Type Stapylococcus Aureus N-acety		1e-05
4aho_A	299	Crystal Structure Of N-acetylneuraminic Acid Lyase		1e-05
4ahq_A	298	Crystal Structure Of N-acetylneuraminic Acid Lyase		1e-05
3lch_A	319	The D-Sialic Acid Aldolase Mutant V251r Length = 31		2e-05
3lcf_A	319	The D-Sialic Acid Aldolase Mutant V251i Length = 31		2e-05
3lcl_A	319	The D-Sialic Acid Aldolase Mutant V251iV265I Length		2e-05
3lbc_A	319	D-Sialic Acid Aldolase Complexed With L-Arabinose L		2e-05
2wo5_A	304	Structure Of Wild Type E. Coli N-Acetylneuraminic A		2e-05
3lcg_A	319	The D-Sialic Acid Aldolase Mutant V251l Length = 31		3e-05
3lci_A	319	The D-Sialic Acid Aldolase Mutant V251w Length = 31		3e-05
2wnq_A	304	Structure Of The E192n Mutant Of E. Coli N-Acetylne		3e-05
2wnz_A	304	Structure Of The E192n Mutant Of E. Coli N-Acetylne		3e-05
2wkj_A	303	Crystal Structure Of The E192n Mutant Of E.Coli N-A		3e-05
2wnn_A	303	Structure Of Wild Type E. Coli N-Acetylneuraminic A		3e-05
3lcw_A	319	L-Kdo Aldolase Complexed With Hydroxypyruvate Lengt		5e-05
1nal_1	297	The Three-Dimensional Structure Of N-Acetylneuramin		6e-05
1fdz_A	297	N-Acetylneuraminate Lyase In Complex With Pyruvate		8e-05
1hl2_A	297	Crystal Structure Of N-Acetylneuraminate Lyase From		8e-05
1f6p_A	293	Crystal Structure Analysis Of N-Acetylneuraminate L		4e-04
3ird_A	291	Structure Of Dihydrodipicolinate Synthase From Clos		4e-04
3a5f_A	291	High-Resolution Structure Of Dhdps From Clostridium		4e-04

>pdb|2R91|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            V GTTG G +++  E K+ L    T A      V+VQ+      E + LAK+AES    
Sbjct: 37  FVAGTTGLGPALSLQE-KMELTDAATSAARR---VIVQVASLNADEAIALAKYAESRGAE 92
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
           AV  LP  +F   S   +  Y RD+  A  + P+F Y+ P
Sbjct: 93  AVASLPPYYFPRLSERQIAKYFRDLCSAV-SIPVFLYNYP 131

>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg) Aldolase Complex With Pyruvate Length = 293

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 129 IDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187
           ID++ VNGTTG G S++  E+  NL+A           ++ Q+GG    + + LAK ++ 
Sbjct: 34  IDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK----IIFQVGGLNLDDAIRLAKLSKD 89
Query: 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
            ++  +      ++   S + LV Y + + E +P  P++ Y+ P  T
Sbjct: 90  FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPH-PVYLYNYPTAT 135

>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus Solfataricus Length = 294

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 129 IDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187
           ID++ VNGTTG G S++  E+  NL+A           ++ Q+GG    + + LAK ++ 
Sbjct: 35  IDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK----IIFQVGGLNLDDAIRLAKLSKD 90
Query: 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
            ++  +      ++   S + LV Y + + E +P  P++ Y+ P  T
Sbjct: 91  FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPH-PVYLYNYPTAT 136

>pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase Y103f,Y130f, A198f Variant Length = 294

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 129 IDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187
           ID++ VNGTTG G S++  E+  NL+A           ++ Q+GG    + + LAK ++ 
Sbjct: 35  IDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK----IIFQVGGLNLDDAIRLAKLSKD 90
Query: 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
            ++  +      F+   S + LV Y + + E +P  P++ ++ P  T
Sbjct: 91  FDIVGIASYAPYFYPRMSEKHLVKYFKTLCEVSPH-PVYLFNYPTAT 136

>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid Lyase From Staphylococcus Aureus Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           VNG++GE   + T ++K   +    EA      ++ Q+G     E +EL K+A  L   A
Sbjct: 50  VNGSSGENFLLNTEQKKQVFKV-AKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDA 108
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           +  +   F+ P + E++ DY  D+ EA     +  Y IP  T V +
Sbjct: 109 LSAVTP-FYYPFTFEEIRDYYFDIIEAT-QNNMIIYAIPDLTGVNI 152

>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus N-acetylneuraminic Acid Lyase In Complex With Pyruvate Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           VNG++GE   + T ++K   +    EA      ++ Q+G     E +EL K+A  L   A
Sbjct: 50  VNGSSGENFLLNTEQKKQVFKV-AKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDA 108
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           +  +   F+ P + E++ DY  D+ EA     +  Y IP  T V +
Sbjct: 109 LSAVTP-FYYPFTFEEIRDYYFDIIEAT-QNNMIIYAIPDLTGVNI 152

>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From Staphylococcus Aureus With The Chemical Modification Thia-lysine At Position 165 Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           VNG++GE   + T ++K   +    EA      ++ Q+G     E +EL K+A  L   A
Sbjct: 51  VNGSSGENFLLNTEQKKQVFKV-AKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           +  +   F+ P + E++ DY  D+ EA     +  Y IP  T V +
Sbjct: 110 LSAVTP-FYYPFTFEEIRDYYFDIIEAT-QNNMIIYAIPDLTGVNI 153

>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant K165c From Staphylococcus Aureus Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           VNG++GE   + T ++K   +    EA      ++ Q+G     E +EL K+A  L   A
Sbjct: 50  VNGSSGENFLLNTEQKKQVFKV-AKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDA 108
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           +  +   F+ P + E++ DY  D+ EA     +  Y IP  T V +
Sbjct: 109 LSAVTP-FYYPFTFEEIRDYYFDIIEAT-QNNMIIYAIPDLTGVNI 152

>pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 66  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169

>pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 66  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169

>pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 66  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169

>pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 66  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169

>pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid Lyase In Space Group P21 Crystal Form I Length = 304

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 51  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154

>pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 66  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169

>pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 66  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169

>pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli N-Acetylneuraminic Acid Lyase In Space Group P21 Length = 304

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 51  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154

>pdb|2WNZ|A Chain A, Structure Of The E192n Mutant Of E. Coli N-Acetylneuraminic Acid Lyase In Complex With Pyruvate In Space Group P21 Crystal Form I Length = 304

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 51  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154

>pdb|2WKJ|A Chain A, Crystal Structure Of The E192n Mutant Of E.Coli N-Acetylneuraminic Acid Lyase In Complex With Pyruvate At 1.45a Resolution In Space Group P212121 Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 51  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154

>pdb|2WNN|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid Lyase In Complex With Pyruvate In Space Group P21 Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 51  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154

>pdb|3LCW|A Chain A, L-Kdo Aldolase Complexed With Hydroxypyruvate Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER   LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 66  VGGSTGEAFVQSLSERAQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRHGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S+E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 125 VSAVTP-FYYPFSLEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169

>pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate Lyase From Escherichia Coli Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    E K     ++  +G     E  +LA  A+     A
Sbjct: 44  VGGSTGEAFVQSLSEREQVLEIVAEEGKGK-IKLIAHVGCVTTAESQQLAASAKRYGFDA 102
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 103 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 147

>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via Borohydride Reduction Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    E K     ++  +G     E  +LA  A+     A
Sbjct: 44  VGGSTGEAFVQSLSEREQVLEIVAEEGKGK-IKLIAHVGCVTTAESQQLAASAKRYGFDA 102
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 103 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 147

>pdb|1HL2|A Chain A, Crystal Structure Of N-Acetylneuraminate Lyase From E. Coli Mutant L142r In Complex With B-Hydroxypyruvate Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     A
Sbjct: 44  VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 102
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V  +   F+ P S E+  D+ R + ++A   P+  Y+IP  + V L
Sbjct: 103 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKL 147

>pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase From Haemophilus Influenzae: Crystal Form Iii Length = 293

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 129 IDQM------VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELA 182
           ID+M      V G+TGE   ++T E+K        EAK     ++ Q+G    +E VEL 
Sbjct: 34  IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQ-IALIAQVGSVNLKEAVELG 92
Query: 183 KHAESLNVHAVLCLPEL--FFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           K+A  L      CL  +  F+   S  ++  Y  D   A   + +  Y IP  T V +
Sbjct: 93  KYATELGYD---CLSAVTPFYYKFSFPEIKHY-YDTIIAETGSNMIVYSIPFLTGVNM 146

>pdb|3IRD|A Chain A, Structure Of Dihydrodipicolinate Synthase From Clostridium Botulinum Length = 291

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +V GTTGE  +MT  ERK  ++ ++ +       V+   G       + ++K AES+ V 
Sbjct: 40  IVCGTTGEATTMTETERKETIK-FVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVD 98
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
            +L +   ++   + + LV + + V +A  +TP+  Y++P
Sbjct: 99  GLLVITP-YYNKTTQKGLVKHFKAVSDAV-STPIIIYNVP 136

>pdb|3A5F|A Chain A, High-Resolution Structure Of Dhdps From Clostridium Botulinum In Complex With Pyruvate Length = 291

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +V GTTGE  +MT  ERK  ++ ++ +       V+   G       + ++K AES+ V 
Sbjct: 40  IVCGTTGEATTMTETERKETIK-FVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVD 98
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
            +L +   ++   + + LV + + V +A  +TP+  Y++P
Sbjct: 99  GLLVITP-YYNKTTQKGLVKHFKAVSDAV-STPIIIYNVP 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	1e-10
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	3e-09
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	2e-08
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	9e-08
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	2e-07
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	3e-07
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	6e-07
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	7e-07
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	1e-06
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	2e-05
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	5e-05
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	2e-04
2pcq_A	283	Putative dihydrodipicolinate synthase; lyase, lysi	4e-04
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	6e-04

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Length = 288

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           VNGTTG G +++  E++ NL A           ++ Q+G     +V+EL K +  +++  
Sbjct: 39  VNGTTGLGPALSKDEKRQNLNALYDVTHK----LIFQVGSLNLNDVMELVKFSNEMDILG 94

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V      +F     + L  Y  ++   +    L+ Y+ P  T   +
Sbjct: 95  VSSHSPYYFPRLPEKFLAKYYEEIARISS-HSLYIYNYPAATGYDI 139

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Length = 293

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           VNGTTG G S++  E+  NL+A           ++ Q+GG    + + LAK ++  ++  
Sbjct: 39  VNGTTGLGPSLSPEEKLENLKAVYDVTNK----IIFQVGGLNLDDAIRLAKLSKDFDIVG 94

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           +      ++   S + LV Y + + E +P  P++ Y+ P  T   +
Sbjct: 95  IASYAPYYYPRMSEKHLVKYFKTLCEVSP-HPVYLYNYPTATGKDI 139

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Length = 294

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
           GTTGEG S+ + ER+  L +++         ++  +     ++  + +  A +     +L
Sbjct: 45  GTTGEGCSVGSRERQAILSSFIAAGI-APSRIVTGVLVDSIEDAADQSAEALNAGARNIL 103

Query: 195 CLPELFFTPASVEDLVDYLRDVGEA--APATPLFYYHIPMFTRVTL 238
             P  +F   S + L  +   V       A  +  Y+IP  T VTL
Sbjct: 104 LAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTL 149

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Length = 318

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           + GT  E   +T  ER   +           F +M  +G    ++V+E    A     + 
Sbjct: 51  ILGTNAEAFLLTREERAQLIATARKAVGPD-FPIMAGVGAHSTRQVLEHINDASVAGANY 109

Query: 193 VLCLPELFFTPASVEDLV-DYLRDVGEAAPATPLFYYHIP 231
           VL LP  +F  A+   ++  +  DV   +P  P+  Y+ P
Sbjct: 110 VLVLPPAYFGKATTPPVIKSFFDDVSCQSP-LPVVIYNFP 148

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} Length = 313

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G  GE   +  AE +     ++  AK     V+V +    F  +  LA+ +       
Sbjct: 48  VLGILGEAPKLDAAEAEAVATRFIKRAK--SMQVIVGVSAPGFAAMRRLARLSMDAGAAG 105

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPAT-PLFYYHIPMFTRVTL 238
           V+  P    +  + E +  Y R   EA     P      P+   V +
Sbjct: 106 VMIAP--PPSLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVM 150

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} Length = 300

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             G+TGE   + TA+R+  + A +  A+     V+  +  T   + V  AK  E L    
Sbjct: 44  PLGSTGEFAYLGTAQREAVVRATIEAAQ-RRVPVVAGVASTSVADAVAQAKLYEKLGADG 102

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           +L + E +F       +  Y R + +A    P+  Y  P F R  L
Sbjct: 103 ILAILEAYFPL-KDAQIESYFRAIADAVE-IPVVIYTNPQFQRSDL 146

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Length = 286

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V GTTG G +++  E+    +A  + A+     V+VQ+      E + LAK+AES    A
Sbjct: 38  VAGTTGLGPALSLQEKMELTDAATSAARR----VIVQVASLNADEAIALAKYAESRGAEA 93

Query: 193 VLCLPELFFTP-----ASVEDLVDYLRDVGEAAPATPLFYYHIP 231
           V  L      P      S   +  Y RD+  A    P+F Y+ P
Sbjct: 94  VASL-----PPYYFPRLSERQIAKYFRDLCSAVS-IPVFLYNYP 131

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Length = 293

 Score = 47.9 bits (115), Expect = 7e-07
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+TGE   ++T E+K        EAK     ++ Q+G    +E VEL K+A  L    
Sbjct: 44  VGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVGSVNLKEAVELGKYATELGYDC 102

Query: 193 VLCLPELFFTP----ASVEDLVDYLRDVGEAAPATPLFYYHIP 231
           +  +     TP     S  ++  Y   +      + +  Y IP
Sbjct: 103 LSAV-----TPFYYKFSFPEIKHYYDTIIAETG-SNMIVYSIP 139

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Length = 309

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           +     E  ++T  ER +     +         V+V       Q     +  A+ L    
Sbjct: 48  ILANFSEQFAITDDERDVLTRTILEHVA-GRVPVIVTTSHYSTQVCAARSLRAQQLGAAM 106

Query: 193 VLCLPELF--FTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
           V+ +P             + ++   V +A    P+     P
Sbjct: 107 VMAMPPYHGATFRVPEAQIFEFYARVSDAIA-IPIMVQDAP 146

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Length = 303

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
           G+TGE    + +ER+  LE    EAK     ++  +G     E  +LA  A+     AV 
Sbjct: 53  GSTGEAFVQSLSEREQVLEIVAEEAK-GKIKLIAHVGCVSTAESQQLAASAKRYGFDAVS 111

Query: 195 CLPELFFTP----ASVEDLVDYLRDVGEAAPATPLFYYHIP 231
            +     TP     S E+  D+ R + ++A   P+  Y+IP
Sbjct: 112 AV-----TPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIP 147

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Length = 344

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
           G+ G+   +T  +R   +E         G  V+V  G       V  A HA+ +    ++
Sbjct: 68  GSMGDWPLLTDEQRMEGVE----RLVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLM 123

Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
            +P +    + +     + + +  AAP  P   Y+ P +   T 
Sbjct: 124 VIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATR 167

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Length = 315

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             G+TGEG  ++  E    ++  +     H    +V +      + V  A+ AESL   A
Sbjct: 64  PLGSTGEGAYLSDPEWDEVVDFTLKTVA-HRVPTIVSVSDLTTAKTVRRAQFAESLGAEA 122

Query: 193 VLCLPELFFTP----ASVEDLVDYLRDVGEAAPATPLFYYHIP 231
           V+ L            +  ++  + R VGEA    P+  Y+ P
Sbjct: 123 VMVL-----PISYWKLNEAEVFQHYRAVGEAIG-VPVMLYNNP 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 59/227 (25%)

Query: 8   VTTITTGGGSGRQNSAEEEAEKAAQTIAQRARRGGHDRS---KRFTQTRKVDNHHNSRPA 64
             T+ +      Q   EE      + +    +      S   + + + R  D  +N    
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQV 125

Query: 65  ASQ--IRRKKKRKRRRKRLRNAHGEVVMIDPSDLPKRAKWTIIITAGLLLLTCML----- 117
            ++  + R +   + R+ L                + AK   ++  G      +L     
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL-------------RPAKN--VLIDG------VLGSGKT 164

Query: 118 -LVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTH-GFTVMVQIGGTCF 175
            +         +  +M                      W+     +   TV+  +    +
Sbjct: 165 WVALDVCLSYKVQCKMDFKI-----------------FWLNLKNCNSPETVLEMLQKLLY 207

Query: 176 Q---EVVELAKHAES--LNVHAV-LCLPELFFTPASVEDLVDYLRDV 216
           Q        + H+ +  L +H++   L  L  +      L+  L +V
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNV 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 61/244 (25%)

Query: 18  GRQNSAEEEAEKAAQTIAQRARRGGHDRSKRFTQTRKVDNHHNSRPAASQIRRKKKRKRR 77
              NS E   E   Q +  +       RS         D+  N +     I+ + +R  +
Sbjct: 190 KNCNSPETVLEML-QKLLYQIDPNWTSRS---------DHSSNIKLRIHSIQAELRRLLK 239

Query: 78  RKRLRNAHGEVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTT 137
            K   N    +V+++  +            A    L+C +L+  T R   + D +   TT
Sbjct: 240 SKPYENCL--LVLLNVQN-----AK--AWNA--FNLSCKILL--TTRFKQVTDFLSAATT 286

Query: 138 GE------GVSMTTAERKLNLEAWMT--------EAKTHGFTVMVQIGGTCFQEVVELAK 183
                    +++T  E K  L  ++         E  T     +  I     ++ +    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWD 345

Query: 184 HAESLNVHAV-----LCLPELFFTPASVEDLVDYL----RDVGEAAPATPLFYYHIPMFT 234
           + + +N   +       L  L   PA    + D L                   HIP   
Sbjct: 346 NWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSA------------HIPTIL 391

Query: 235 RVTL 238
              +
Sbjct: 392 LSLI 395

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} PDB: 3s5n_A Length = 307

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+ GE   +T++ER   +             ++   G    Q  VE+      +   A
Sbjct: 54  VQGSNGEFPFLTSSERLEVVSRVRQAMP-KNRLLLAGSGCESTQATVEMTVSMAQVGADA 112

Query: 193 VLCL-PELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
            + + P  +    S   L+ +   V + +P  P+  Y +P
Sbjct: 113 AMVVTPCYYRGRMSSAALIHHYTKVADLSP-IPVVLYSVP 151

>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} Length = 283

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 18/104 (17%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V G+ GEGV +T  ER   L A            +V +      +       A++    A
Sbjct: 37  VYGSNGEGVHLTPEERARGLRALRPRKP-----FLVGLMEETLPQAEGALLEAKAAGAMA 91

Query: 193 VLCLPELFFTPA-----SVEDLVDYLRDVGEAAPATPLFYYHIP 231
           +L        P          L+ Y   +   A   PLF YH+P
Sbjct: 92  LLAT-----PPRYYHGSLGAGLLRYYEAL---AEKMPLFLYHVP 127

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A* Length = 301

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT---CFQEVVELAKHAESLNVH 191
           GTTGE  ++T  E +  +E  +   K  G  V V + G       E V LAK A+     
Sbjct: 49  GTTGESATLTHEEHRTCIEIAVETCK--GTKVKV-LAGAGSNATHEAVGLAKFAKEHGAD 105

Query: 192 AVLC 195
            +L 
Sbjct: 106 GILS 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	100.0
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	100.0
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	100.0
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	100.0
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	100.0
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	100.0
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	100.0
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	100.0
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	100.0
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	100.0
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	100.0
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	100.0
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	100.0
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	100.0
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	100.0
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	100.0
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	100.0
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	100.0
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	100.0
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	100.0
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	100.0
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	100.0
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	100.0
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	100.0
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	100.0
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	100.0
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	99.98
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	99.97
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	99.97
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	99.97
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	99.97
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	99.97
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	99.97
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	99.97
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	99.96
2pcq_A	283	Putative dihydrodipicolinate synthase; lyase, lysi	99.96
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	96.99
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	96.73
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	96.63
3ble_A	337	Citramalate synthase from leptospira interrogans;	96.45
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	96.41
3i4e_A	439	Isocitrate lyase; structural genomics, seattle str	96.27
3lg3_A	435	Isocitrate lyase; conserved, CD, proteomics eviden	96.07
3eol_A	433	Isocitrate lyase; seattle structural center for in	96.0
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	95.92
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	95.76
1f8m_A	429	Isocitrate lyase, ICL; alpha-beta barrel, helix-sw	95.35
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	95.25
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	95.12
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	95.04
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	94.97
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	94.88
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	94.47
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	94.31
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	94.16
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	93.88
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	93.86
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	93.7
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	93.69
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	93.48
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	93.43
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	93.13
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	92.84
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	92.68
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	92.67
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	92.55
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	92.41
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	92.39
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	92.3
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	92.2
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	92.2
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	92.12
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	92.05
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	91.84
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	91.64
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	91.56
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	91.13
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	91.09
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	91.03
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	90.91
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	90.74
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	90.64
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	90.63
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	90.41
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	90.4
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	90.32
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	90.28
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	90.17
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	90.03
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	90.0
3o74_A	272	Fructose transport system repressor FRUR; dual tra	89.97
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	89.85
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	89.79
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	89.7
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	89.61
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	89.44
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	89.24
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	89.19
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	89.16
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	89.16
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	89.16
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	89.05
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	89.0
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	88.88
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	88.79
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	88.76
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	88.48
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	88.44
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	88.39
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	88.27
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	88.23
2hbv_A	334	2-amino-3-carboxymuconate 6-semialdehyde decarbox;	88.22
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	88.21
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	88.17
3ij6_A	312	Uncharacterized metal-dependent hydrolase; structu	88.15
3irs_A	291	Uncharacterized protein BB4693; structural genomic	88.13
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	88.11
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	88.07
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	87.82
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	87.82
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	87.71
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	87.65
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	87.63
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	87.62
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	87.61
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	87.59
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	87.59
2x7x_A	325	Sensor protein; transferase, sensor histidine kina	87.52
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	87.38
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	87.23
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	87.23
1viz_A	240	PCRB protein homolog; structural genomics, unknown	87.18
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	86.71
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	86.66
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	86.62
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	86.6
3e61_A	277	Putative transcriptional repressor of ribose OPER;	86.59
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	86.46
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	86.42
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	86.39
2dvt_A	327	Thermophilic reversible gamma-resorcylate decarbo;	86.13
3k4h_A	292	Putative transcriptional regulator; structural gen	85.91
3egc_A	291	Putative ribose operon repressor; structural genom	85.83
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	85.79
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	85.7
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	85.7
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	85.68
2f6k_A	307	Metal-dependent hydrolase; metal dependent hydroly	85.51
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	85.48
2wm1_A	336	2-amino-3-carboxymuconate-6-semialdehyde decarboxy	85.37
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	85.31
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	85.07
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	85.07
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	85.02
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	85.01
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	84.98
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	84.96
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	84.88
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	84.72
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	84.63
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	84.61
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	84.56
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	84.48
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	84.47
3d02_A	303	Putative LACI-type transcriptional regulator; peri	84.39
8abp_A	306	L-arabinose-binding protein; binding proteins; HET	84.32
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	84.29
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	84.2
2dri_A	271	D-ribose-binding protein; sugar transport; HET: RI	84.07
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	84.0
3h75_A	350	Periplasmic sugar-binding domain protein; protein	83.95
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	83.86
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	83.77
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	83.76
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	83.71
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	83.66
2rjo_A	332	Twin-arginine translocation pathway signal protei;	83.53
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	83.42
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	83.42
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	83.41
3nur_A	357	Amidohydrolase; TIM barrel; 1.75A {Staphylococcus	83.23
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	83.1
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	82.7
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	82.7
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	82.69
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	82.64
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	82.59
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	82.26
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	82.18
3kjx_A	344	Transcriptional regulator, LACI family; LACL famil	82.08
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	82.04
3h5o_A	339	Transcriptional regulator GNTR; transcription regu	81.99
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	81.82
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	81.81
1bwv_A	493	Rubisco, protein (ribulose bisphosphate carboxylas	81.74
4ay7_A	348	Methylcobalamin\: coenzyme M methyltransferase; TI	81.74
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	81.48
2vk2_A	306	YTFQ, ABC transporter periplasmic-binding protein	81.47
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	81.31
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	81.21
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	81.11
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	80.98
2iks_A	293	DNA-binding transcriptional dual regulator; escher	80.59
1u83_A	276	Phosphosulfolactate synthase; structural genomics,	80.59
4dnh_A	396	Uncharacterized protein; structural genomics, PSI-	80.53
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	80.44
3gv0_A	288	Transcriptional regulator, LACI family; transcript	80.43
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	80.33
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	80.06

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=100.00  E-value=1.1e-34  Score=262.98  Aligned_cols=133  Identities=24%  Similarity=0.295  Sum_probs=123.4

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||.++++.+++.+++
T Consensus        25 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g   84 (304)
T 3cpr_A           25 VTPFTESGDIDIAAGREVAAYLV--------------------DKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGD   84 (304)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHHH--------------------HTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred             eccCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            455  578888888888888873                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        85 -rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~-~~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~  159 (304)
T 3cpr_A           85 -RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKP-SQEGLLAHFGAIAAAT-EVPICLYDIPGRSGIPIE  159 (304)
T ss_dssp             -TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCC
T ss_pred             -CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=100.00  E-value=2.2e-34  Score=259.95  Aligned_cols=129  Identities=22%  Similarity=0.338  Sum_probs=118.5

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT  165 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp  165 (239)
                      ++++||++++.++++|+                     ++ |+.|++++|||||+++||.+||+++++.+++.++| |+|
T Consensus        21 ~dg~iD~~~l~~lv~~l---------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvp   78 (297)
T 3flu_A           21 QDGSIHYEQLRDLIDWH---------------------IENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAK-RVP   78 (297)
T ss_dssp             TTSCBCHHHHHHHHHHH---------------------HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSC
T ss_pred             CCCCcCHHHHHHHHHHH---------------------HHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC-CCc
Confidence            46666666666666665                     45 45688999999999999999999999999999999 999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        79 viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-~~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  150 (297)
T 3flu_A           79 VIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKP-SQEGIYQHFKTIAEAT-SIPMIIYNVPGRTVVSMT  150 (297)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCC
T ss_pred             EEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEECCchhccCCC
Confidence            99999999999999999999999999999999999999 9999999999999999 899999999999999885

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=100.00  E-value=2.3e-34  Score=260.51  Aligned_cols=133  Identities=21%  Similarity=0.307  Sum_probs=122.9

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||.++++.+++.++|
T Consensus        21 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g   80 (301)
T 1xky_A           21 VTPFDINGNIDFAKTTKLVNYLI--------------------DNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK   80 (301)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             ECcCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            455  578888888888888773                    2455688999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        81 -rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  155 (301)
T 1xky_A           81 -RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKP-SQEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQIS  155 (301)
T ss_dssp             -SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCC
T ss_pred             -CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=100.00  E-value=1.8e-34  Score=259.89  Aligned_cols=132  Identities=23%  Similarity=0.360  Sum_probs=121.7

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc--CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHh
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA--PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEA  159 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~--gg~glvV~GstGE~~sLT~eER~~li~~vve~~  159 (239)
                      ++|  ++++||++++.++++|+                     ++  |+.|++++|||||+++||.+||+++++.+++.+
T Consensus        12 vTPf~~dg~iD~~~l~~lv~~l---------------------i~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~   70 (293)
T 1f6k_A           12 LVSFNEDGTINEKGLRQIIRHN---------------------IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEA   70 (293)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHH---------------------HHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCCCcCHHHHHHHHHHH---------------------HhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHh
Confidence            445  56777877777777777                     45  556889999999999999999999999999999


Q ss_pred             cCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         160 KTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       160 ~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      +| |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        71 ~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-~~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  147 (293)
T 1f6k_A           71 KD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF-SFPEIKHYYDTIIAET-GSNMIVYSIPFLTGVNMG  147 (293)
T ss_dssp             TT-SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHH-CCCEEEEECHHHHCCCCC
T ss_pred             CC-CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEECccccCcCCC
Confidence            99 99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=100.00  E-value=2.1e-34  Score=259.22  Aligned_cols=133  Identities=25%  Similarity=0.365  Sum_probs=122.8

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.++|
T Consensus        10 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g   69 (291)
T 3tak_A           10 VTPMLKDGGVDWKSLEKLVEWHI--------------------EQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANK   69 (291)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHHH--------------------HHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCCCcCHHHHHHHHHHHH--------------------HCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC
Confidence            455  577888888888777772                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        70 -r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-~~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~  144 (291)
T 3tak_A           70 -RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKP-TQEGLYQHYKAIAEAV-ELPLILYNVPGRTGVDLS  144 (291)
T ss_dssp             -SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCC
T ss_pred             -CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEecccccCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=100.00  E-value=1.6e-34  Score=261.48  Aligned_cols=133  Identities=23%  Similarity=0.303  Sum_probs=122.8

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.++|
T Consensus        13 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g   72 (300)
T 3eb2_A           13 VSPVDAEGRVRADVMGRLCDDLI--------------------QAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQR   72 (300)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHHH--------------------HTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTT
T ss_pred             eccCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCC
Confidence            445  577888888888777773                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        73 -rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-~~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  147 (300)
T 3eb2_A           73 -RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPL-KDAQIESYFRAIADAV-EIPVVIYTNPQFQRSDLT  147 (300)
T ss_dssp             -SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCC-CHHHHHHHHHHHHHHC-SSCEEEEECTTTCSSCCC
T ss_pred             -CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHHC-CCCEEEEECccccCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 799999999999999886

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=100.00  E-value=2e-34  Score=259.53  Aligned_cols=133  Identities=19%  Similarity=0.249  Sum_probs=122.7

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||.++++.+++.+++
T Consensus        10 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g   69 (292)
T 2ojp_A           10 VTPMDEKGNVCRASLKKLIDYHV--------------------ASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADG   69 (292)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHHH--------------------HHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             eccCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC
Confidence            455  577888888888877773                    2456689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        70 -r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-s~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~  144 (292)
T 2ojp_A           70 -RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP-SQEGLYQHFKAIAEHT-DLPQILYNVPSRTGCDLL  144 (292)
T ss_dssp             -SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCC-CHHHHHHHHHHHHTTC-SSCEEEECCHHHHSCCCC
T ss_pred             -CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCcchhccCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=100.00  E-value=2.9e-34  Score=260.43  Aligned_cols=133  Identities=21%  Similarity=0.258  Sum_probs=124.0

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++
T Consensus        24 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g   83 (304)
T 3l21_A           24 VTPFSGDGSLDTATAARLANHLV--------------------DQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD   83 (304)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHHH--------------------HTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC
Confidence            555  688899888888888873                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        84 -rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  158 (304)
T 3l21_A           84 -RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKP-PQRGLQAHFTAVADAT-ELPMLLYDIPGRSAVPIE  158 (304)
T ss_dssp             -TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHTSC-SSCEEEEECHHHHSSCCC
T ss_pred             -CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=100.00  E-value=2.4e-34  Score=262.48  Aligned_cols=133  Identities=26%  Similarity=0.374  Sum_probs=122.8

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++
T Consensus        31 vTPf~~dg~iD~~~l~~li~~li--------------------~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g   90 (315)
T 3si9_A           31 ITPFDDNGAIDEKAFCNFVEWQI--------------------TQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAK   90 (315)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHHH--------------------HTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCC
Confidence            455  577888888888877773                    2455688999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        91 -rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~-~~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  165 (315)
T 3si9_A           91 -RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRP-NQRGLYTHFSSIAKAI-SIPIIIYNIPSRSVIDMA  165 (315)
T ss_dssp             -SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             -CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHcC-CCCEEEEeCchhhCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=100.00  E-value=3.4e-34  Score=261.21  Aligned_cols=133  Identities=22%  Similarity=0.294  Sum_probs=122.1

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.++|
T Consensus        32 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g   91 (314)
T 3qze_A           32 VTPFDAQGRLDWDSLAKLVDFHL--------------------QEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKG   91 (314)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHHH--------------------HHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            444  577777777777777762                    2456689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        92 -rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  166 (314)
T 3qze_A           92 -RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKP-TQEGMYQHFRHIAEAV-AIPQILYNVPGRTSCDML  166 (314)
T ss_dssp             -SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHS-CSCEEEEECHHHHSCCCC
T ss_pred             -CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=2.7e-34  Score=259.09  Aligned_cols=134  Identities=20%  Similarity=0.265  Sum_probs=123.2

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++
T Consensus        12 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g   71 (294)
T 3b4u_A           12 TTPFKTDGTVDIDAMIAHARRCL--------------------SNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIA   71 (294)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             ECCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            455  577888888888887773                    2455688999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHhhCC--CCcEEEEeCCCCccccC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT-PASVEDLVDYLRDVGEAAP--ATPLFYYHIPMFTRVTL  238 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~-~~s~e~iv~yf~~Vaeatp--dLPIiLYN~P~~TG~~L  238 (239)
                       ++|||+|++++||+++++++++|+++|||++|+.||||++ + +++++++||++|++++|  ++||||||+|.+||++|
T Consensus        72 -r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~-s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l  149 (294)
T 3b4u_A           72 -PSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNV-SDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTL  149 (294)
T ss_dssp             -GGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSC-CHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCC
T ss_pred             -CCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCC-CHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCC
Confidence             9999999999999999999999999999999999999999 9 99999999999999997  79999999999999988


Q ss_pred             C
Q psy9602         239 K  239 (239)
Q Consensus       239 s  239 (239)
                      +
T Consensus       150 ~  150 (294)
T 3b4u_A          150 S  150 (294)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=100.00  E-value=3.2e-34  Score=259.79  Aligned_cols=133  Identities=26%  Similarity=0.373  Sum_probs=123.0

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++
T Consensus        20 vTPF~~dg~iD~~~l~~lv~~li--------------------~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g   79 (303)
T 2wkj_A           20 LTPFDQQQALDKASLRRLVQFNI--------------------QQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG   79 (303)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             EcCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCC
Confidence            455  578888888888888773                    2455688999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC-CcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA-TPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd-LPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ + +||||||+|.+||++|+
T Consensus        80 -rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~~lPiilYn~P~~tg~~l~  155 (303)
T 2wkj_A           80 -KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPF-SFEEHCDHYRAIIDSA-DGLPMVVYNIPALSGVKLT  155 (303)
T ss_dssp             -TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHH-TTCCEEEEECHHHHCCCCC
T ss_pred             -CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCC-CHHHHHHHHHHHHHhC-CCCCEEEEeCccccCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 6 99999999999999885

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.8e-34  Score=261.04  Aligned_cols=133  Identities=21%  Similarity=0.281  Sum_probs=124.2

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++
T Consensus        33 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g   92 (315)
T 3na8_A           33 ITPFAADGGLDLPALGRSIERLI--------------------DGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAH   92 (315)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             eCcCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            555  688899999988888883                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|+++++|+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        93 -rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  167 (315)
T 3na8_A           93 -RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKL-NEAEVFQHYRAVGEAI-GVPVMLYNNPGTSGIDMS  167 (315)
T ss_dssp             -SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             -CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC-CCcEEEEeCcchhCcCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=4.9e-34  Score=257.16  Aligned_cols=128  Identities=23%  Similarity=0.336  Sum_probs=116.9

Q ss_pred             ccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCC-CCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          88 VVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPI-IDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        88 ~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg-~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      +++||++.+.++++|+                     ++.| .|++++|||||+++||.+||+++++.+++.++| |+||
T Consensus        15 dg~iD~~~l~~lv~~l---------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpv   72 (294)
T 2ehh_A           15 EGEVDYEALGNLIEFH---------------------VDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAG-RIKV   72 (294)
T ss_dssp             TTEECHHHHHHHHHHH---------------------HTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEE
T ss_pred             CCCcCHHHHHHHHHHH---------------------HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcE
Confidence            5556666665555555                     5554 578999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        73 iaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  143 (294)
T 2ehh_A           73 IAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKP-TQRGLYEHFKTVAQEV-DIPIIIYNIPSRTCVEIS  143 (294)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCC
T ss_pred             EEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCCcccCcCCC
Confidence            9999999999999999999999999999999999999 9999999999999999 899999999999999885

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=100.00  E-value=3.1e-34  Score=258.45  Aligned_cols=129  Identities=19%  Similarity=0.333  Sum_probs=119.2

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++ +||++.+.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++ ++||
T Consensus        17 ~d-~iD~~~l~~lv~~li--------------------~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g-rvpv   74 (292)
T 3daq_A           17 NN-KVNLEALKAHVNFLL--------------------ENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDK-RVPV   74 (292)
T ss_dssp             TT-EECHHHHHHHHHHHH--------------------HTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCE
T ss_pred             CC-CcCHHHHHHHHHHHH--------------------HcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC-CCcE
Confidence            46 777777777777762                    2455688999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        75 iaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-~~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~  145 (292)
T 3daq_A           75 IAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKT-NQRGLVKHFEAIADAV-KLPVVLYNVPSRTNMTIE  145 (292)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHH-CSCEEEEECHHHHSCCCC
T ss_pred             EEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCC
Confidence            9999999999999999999999999999999999999 9999999999999999 899999999999999886

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=100.00  E-value=4.6e-34  Score=256.77  Aligned_cols=128  Identities=25%  Similarity=0.399  Sum_probs=117.7

Q ss_pred             ccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          88 VVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        88 ~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      +++||++.+.++++|+                     ++ |+.|++++|||||+++||.+||.++++.+++.+++ |+||
T Consensus        15 dg~iD~~~l~~lv~~l---------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~pv   72 (289)
T 2yxg_A           15 NKEVDFDGLEENINFL---------------------IENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNG-RVQV   72 (289)
T ss_dssp             TTEECHHHHHHHHHHH---------------------HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSEE
T ss_pred             CCCcCHHHHHHHHHHH---------------------HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCcE
Confidence            5666666666666665                     45 45678999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        73 iaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-s~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~  143 (289)
T 2yxg_A           73 IAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKP-TQEGLRKHFGKVAESI-NLPIVLYNVPSRTAVNLE  143 (289)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCC
Confidence            9999999999999999999999999999999999999 9999999999999999 899999999999999885

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=100.00  E-value=3e-34  Score=258.20  Aligned_cols=132  Identities=24%  Similarity=0.403  Sum_probs=120.2

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  +++ ||++++.++++|++                    -.|+.|++++|||||+++||.+||.++++.+++.++|
T Consensus        11 vTPf~~dg-iD~~~l~~lv~~li--------------------~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g   69 (291)
T 3a5f_A           11 ITPFTNTG-VDFDKLSELIEWHI--------------------KSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNK   69 (291)
T ss_dssp             CCCBCSSS-BCHHHHHHHHHHHH--------------------HTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             EcCcCCCC-cCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            445  567 88888877777772                    2455688999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        70 -r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-s~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~  144 (291)
T 3a5f_A           70 -RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKT-TQKGLVKHFKAVSDAV-STPIIIYNVPGRTGLNIT  144 (291)
T ss_dssp             -SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHC-CTGGGC-CSCEEEEECHHHHSCCCC
T ss_pred             -CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=5.4e-34  Score=261.86  Aligned_cols=133  Identities=28%  Similarity=0.260  Sum_probs=123.7

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++
T Consensus        43 vTPF~~dg~iD~~~l~~lv~~li--------------------~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g  102 (332)
T 2r8w_A           43 ITPADEAGRVDIEAFSALIARLD--------------------AAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRG  102 (332)
T ss_dssp             CCCBCTTCCBCHHHHHHHHHHHH--------------------HHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             eCCcCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            455  578888888888888873                    2456689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus       103 -rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~-s~~~l~~~f~~VA~a~-~lPiilYn~P~~tg~~l~  177 (332)
T 2r8w_A          103 -RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPL-TQEEAYHHFAAVAGAT-ALPLAIYNNPTTTRFTFS  177 (332)
T ss_dssp             -SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCC-CHHHHHHHHHHHHHHC-SSCEEEECCHHHHCCCCC
T ss_pred             -CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=100.00  E-value=3.7e-34  Score=258.77  Aligned_cols=130  Identities=28%  Similarity=0.366  Sum_probs=120.4

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||.++++.+++.++| |+||
T Consensus        14 ~dg~iD~~~l~~lv~~li--------------------~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-rvpv   72 (297)
T 2rfg_A           14 INGQVDEKALAGLVDWQI--------------------KHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQG-RVPV   72 (297)
T ss_dssp             ETTEECHHHHHHHHHHHH--------------------HTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSCB
T ss_pred             CCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-CCeE
Confidence            677777777777777772                    2455688999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        73 iaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  143 (297)
T 2rfg_A           73 IAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRP-SQEGLYQHFKMVHDAI-DIPIIVYNIPPRAVVDIK  143 (297)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             EEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCC
Confidence            9999999999999999999999999999999999999 9999999999999999 899999999999999885

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=100.00  E-value=1.3e-33  Score=256.62  Aligned_cols=132  Identities=16%  Similarity=0.215  Sum_probs=120.9

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.++|
T Consensus        17 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g   76 (309)
T 3fkr_A           17 PTTFADTGDLDLASQKRAVDFMI--------------------DAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAG   76 (309)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             eCCCCcCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCC
Confidence            445  577888888888777773                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC---CCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF---FTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL  238 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y---~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~L  238 (239)
                       |+|||+|++++||+++++++++|+++|||++|+.||||   +++ +++++++||++|++++ ++||||||+|. ||++|
T Consensus        77 -rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~-tg~~l  152 (309)
T 3fkr_A           77 -RVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRV-PEAQIFEFYARVSDAI-AIPIMVQDAPA-SGTAL  152 (309)
T ss_dssp             -SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCC-CHHHHHHHHHHHHHHC-SSCEEEEECGG-GCCCC
T ss_pred             -CCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCCC-CCCCC
Confidence             99999999999999999999999999999999999999   688 9999999999999999 89999999997 99988


Q ss_pred             C
Q psy9602         239 K  239 (239)
Q Consensus       239 s  239 (239)
                      +
T Consensus       153 ~  153 (309)
T 3fkr_A          153 S  153 (309)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=100.00  E-value=7e-34  Score=262.30  Aligned_cols=133  Identities=20%  Similarity=0.317  Sum_probs=123.6

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||.++++.+++.+++
T Consensus        40 vTPF~~dg~ID~~~l~~lv~~li--------------------~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g   99 (343)
T 2v9d_A           40 STIFTADGQLDKPGTAALIDDLI--------------------KAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDR   99 (343)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            455  578888888888888873                    2456689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus       100 -rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~-s~~~l~~~f~~VA~a~-~lPiilYn~P~~tg~~l~  174 (343)
T 2v9d_A          100 -RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKV-SEANLIRYFEQVADSV-TLPVMLYNFPALTGQDLT  174 (343)
T ss_dssp             -SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCC-CHHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCC
T ss_pred             -CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeCchhcCcCCC
Confidence             99999999999999999999999999999999999999999 9999999999999999 899999999999999885

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=100.00  E-value=7.6e-34  Score=257.68  Aligned_cols=129  Identities=21%  Similarity=0.303  Sum_probs=119.4

Q ss_pred             ccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEE
Q psy9602          88 VVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVM  167 (239)
Q Consensus        88 ~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVI  167 (239)
                      +++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++ |+|||
T Consensus        27 dg~iD~~~l~~lv~~li--------------------~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvpVi   85 (306)
T 1o5k_A           27 NGELDLESYERLVRYQL--------------------ENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-KIPVI   85 (306)
T ss_dssp             TTEECHHHHHHHHHHHH--------------------HTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-SSCEE
T ss_pred             CCCcCHHHHHHHHHHHH--------------------HcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-CCeEE
Confidence            66777777777777762                    2455688999999999999999999999999999999 99999


Q ss_pred             EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         168 VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       168 aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      +|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        86 aGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  155 (306)
T 1o5k_A           86 VGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKP-TQEGLYQHYKYISERT-DLGIVVYNVPGRTGVNVL  155 (306)
T ss_dssp             EECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHTTC-SSCEEEEECHHHHSCCCC
T ss_pred             EcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEeCccccCcCCC
Confidence            999999999999999999999999999999999999 9999999999999999 899999999999999885

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=100.00  E-value=9.6e-34  Score=256.24  Aligned_cols=130  Identities=21%  Similarity=0.333  Sum_probs=118.4

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT  165 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp  165 (239)
                      ++++||++++.++++|+                     ++ |+.|++++|||||+++||.+||+++++.+++.++|.|+|
T Consensus        21 ~dg~iD~~~l~~lv~~l---------------------i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvp   79 (301)
T 3m5v_A           21 KNGKVDEQSYARLIKRQ---------------------IENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVK   79 (301)
T ss_dssp             ETTEECHHHHHHHHHHH---------------------HHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCE
T ss_pred             CCCCCCHHHHHHHHHHH---------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCe
Confidence            56666666666666666                     44 556889999999999999999999999999998764699


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||+|+++++|+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        80 viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  151 (301)
T 3m5v_A           80 VLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKP-TQQGLYEHYKAIAQSV-DIPVLLYNVPGRTGCEIS  151 (301)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEeCchhhCcCCC
Confidence            99999999999999999999999999999999999999 9999999999999999 899999999999999885

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=100.00  E-value=1.9e-33  Score=256.05  Aligned_cols=133  Identities=19%  Similarity=0.246  Sum_probs=124.4

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+++
T Consensus        16 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g   75 (311)
T 3h5d_A           16 ITPFHEDGSINFDAIPALIEHLL--------------------AHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNG   75 (311)
T ss_dssp             CCCBCTTSSBCTTHHHHHHHHHH--------------------HTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCS
T ss_pred             ecCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            455  688999999998888883                    2456689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNV-HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGA-daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++++||+++++++++|+++|+ |++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        76 -rvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  151 (311)
T 3h5d_A           76 -RVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKP-SQEGMYQHFKAIADAS-DLPIIIYNIPGRVVVELT  151 (311)
T ss_dssp             -SSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCC-CHHHHHHHHHHHHHSC-SSCEEEEECHHHHSSCCC
T ss_pred             -CCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEecccccCCCCC
Confidence             9999999999999999999999999997 9999999999999 9999999999999999 899999999999999885

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=100.00  E-value=9e-34  Score=257.30  Aligned_cols=129  Identities=18%  Similarity=0.244  Sum_probs=118.3

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT  165 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp  165 (239)
                      ++++||++.+.++++|+                     ++ |+.|++++|||||+++||.+||+++++.+++.+++ ++|
T Consensus        28 ~dg~iD~~~l~~lv~~l---------------------i~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g-r~p   85 (307)
T 3s5o_A           28 ATAEVDYGKLEENLHKL---------------------GTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPK-NRL   85 (307)
T ss_dssp             TTSCBCHHHHHHHHHHH---------------------TTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCT-TSE
T ss_pred             CCCCcCHHHHHHHHHHH---------------------HHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCC-CCc
Confidence            56677777776666666                     45 45578999999999999999999999999999999 999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC--CCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT--PASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~--~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||+|+++++|+++++++++|+++|||++|+.||||++  + +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        86 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~-s~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~  159 (307)
T 3s5o_A           86 LLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRM-SSAALIHHYTKVADLS-PIPVVLYSVPANTGLDLP  159 (307)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCC-CHHHHHHHHHHHHhhc-CCCEEEEeCCcccCCCCC
Confidence            9999999999999999999999999999999999996  6 9999999999999999 899999999999999885

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=100.00  E-value=6e-34  Score=256.35  Aligned_cols=129  Identities=20%  Similarity=0.371  Sum_probs=119.7

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT  165 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp  165 (239)
                      ++++||++.+.++++|+                     ++ |+.|++++|||||+++||.+||+++++.+++.+++ |+|
T Consensus        14 ~dg~iD~~~l~~lv~~l---------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-r~p   71 (292)
T 2vc6_A           14 ADDRIDEVALHDLVEWQ---------------------IEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANG-RVP   71 (292)
T ss_dssp             ETTEECHHHHHHHHHHH---------------------HHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSC
T ss_pred             CCCCcCHHHHHHHHHHH---------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-CCc
Confidence            56777777777777766                     44 55688999999999999999999999999999999 999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||+|++++||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        72 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~  143 (292)
T 2vc6_A           72 VIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKP-TQEGIYQHFKAIDAAS-TIPIIVYNIPGRSAIEIH  143 (292)
T ss_dssp             BEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             EEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEeCccccCcCCC
Confidence            99999999999999999999999999999999999999 9999999999999999 899999999999999885

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=99.98  E-value=7.5e-33  Score=252.77  Aligned_cols=129  Identities=19%  Similarity=0.317  Sum_probs=112.1

Q ss_pred             ccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcC-CCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          88 VVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAP-IIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        88 ~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~g-g~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      +++||++++.++++|+                     ++. +.|++++|||||+++||.+||+++++.+++.+++ ++||
T Consensus        26 dg~iD~~~l~~lv~~l---------------------i~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g-rvpv   83 (318)
T 3qfe_A           26 TDTLDLASQERYYAYL---------------------ARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGP-DFPI   83 (318)
T ss_dssp             TTEECHHHHHHHHHHH---------------------HTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCT-TSCE
T ss_pred             CCCCCHHHHHHHHHHH---------------------HHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC-CCcE
Confidence            5666666666666665                     554 4578999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCc-cccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT-PASVEDLVDYLRDVGEAAPATPLFYYHIPMFT-RVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~-~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~T-G~~Ls  239 (239)
                      |+|++++||+++++++++|+++|||++|+.||+||. +.+++++++||++|++++ ++||||||+|.+| |++|+
T Consensus        84 iaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~-~lPiilYn~P~~t~g~~l~  157 (318)
T 3qfe_A           84 MAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQS-PLPVVIYNFPGVCNGIDLD  157 (318)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHC-SSCEEEEECCC----CCCC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhC-CCCEEEEeCCcccCCCCCC
Confidence            999999999999999999999999999999998885 328999999999999999 8999999999997 99885

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=99.97  E-value=5e-33  Score=252.98  Aligned_cols=129  Identities=19%  Similarity=0.250  Sum_probs=116.2

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.+ | ++||
T Consensus        22 ~dg~iD~~~l~~lv~~li--------------------~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-g-rvpV   79 (313)
T 3dz1_A           22 DDGKIDDVSIDRLTDFYA--------------------EVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-K-SMQV   79 (313)
T ss_dssp             TTSCBCHHHHHHHHHHHH--------------------HTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-T-TSEE
T ss_pred             CCCCcCHHHHHHHHHHHH--------------------HCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-C-CCcE
Confidence            567777777777777662                    24556899999999999999999999999999999 8 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC-CCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP-ATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp-dLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|++++||+++++++++|+++|||++|+.||| |.+ +++++++||++|+++++ ++||||||+|.+||++|+
T Consensus        80 iaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~-~~~-s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~  151 (313)
T 3dz1_A           80 IVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP-SLR-TDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMT  151 (313)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT-TCC-SHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCC
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCC-CHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCC
Confidence            999999999999999999999999999999998 557 99999999999999993 399999999999999885

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=99.97  E-value=1.5e-32  Score=247.12  Aligned_cols=130  Identities=22%  Similarity=0.363  Sum_probs=119.0

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||.++++.+++.++ 
T Consensus         8 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-   66 (288)
T 2nuw_A            8 ITPFDKQGKVNVDALKTHAKNLL--------------------EKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTH-   66 (288)
T ss_dssp             CCCBCTTSCBCHHHHHHHHHHHH--------------------HTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCS-
T ss_pred             ecCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-
Confidence            455  678888888888888873                    245568899999999999999999999999999875 


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT-PASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~-~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       +  ||+|++++||+++++++++|+++|||++|+.||||++ + +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        67 -g--ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  140 (288)
T 2nuw_A           67 -K--LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYYFPRL-PEKFLAKYYEEIARIS-SHSLYIYNYPAATGYDIP  140 (288)
T ss_dssp             -C--EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCCSSCSC-CHHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCC
T ss_pred             -C--eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEECchHhCcCCC
Confidence             3  9999999999999999999999999999999999999 9 9999999999999999 899999999999999885

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=99.97  E-value=2.5e-32  Score=246.13  Aligned_cols=130  Identities=25%  Similarity=0.408  Sum_probs=118.8

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||.++++.+++.++ 
T Consensus         8 vTPf~~dg~iD~~~l~~lv~~li--------------------~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~-   66 (293)
T 1w3i_A            8 ITPFTKDNRIDKEKLKIHAENLI--------------------RKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTN-   66 (293)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCS-
T ss_pred             eCCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcC-
Confidence            455  678888888888888773                    245568999999999999999999999999999875 


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT-PASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~-~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       +  ||+|++++||+++++++++|+++|||++|+.||||++ + +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        67 -g--viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  140 (293)
T 1w3i_A           67 -K--IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRM-SEKHLVKYFKTLCEVS-PHPVYLYNYPTATGKDID  140 (293)
T ss_dssp             -C--EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCSCSSC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             -C--EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC-CHHHHHHHHHHHHhhC-CCCEEEEECchhhCcCCC
Confidence             3  9999999999999999999999999999999999999 9 9999999999999999 899999999999999885

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=99.97  E-value=5.6e-32  Score=250.00  Aligned_cols=129  Identities=18%  Similarity=0.252  Sum_probs=117.9

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|++                    -.|+.|++++|||||+++||.+||+++++.   .+++
T Consensus        35 vTPF~~dg~ID~~~l~~lv~~li--------------------~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~---~~~g   91 (344)
T 2hmc_A           35 MTPCRQDRTPDFDALVRKGKELI--------------------ADGMSAVVYCGSMGDWPLLTDEQRMEGVER---LVKA   91 (344)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCCCEEESSGGGTGGGSCHHHHHHHHHH---HHHT
T ss_pred             eCCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEeCccCcChhhCCHHHHHHHHHH---HhCC
Confidence            455  578888888888888873                    245668999999999999999999999999   5677


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHh-hCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT-PASVEDLVDYLRDVGE-AAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~-~~s~e~iv~yf~~Vae-atpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|+++++|+++|+++++|+++|||++|+.||||++ + +++++++||++|++ ++ ++||||||+| +||++|+
T Consensus        92 -rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~-s~~~l~~~f~~IA~aa~-~lPiilYn~P-~tg~~l~  167 (344)
T 2hmc_A           92 -GIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGS-VIAAQKAHFKAILSAAP-EIPAVIYNSP-YYGFATR  167 (344)
T ss_dssp             -TCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTT-CHHHHHHHHHHHHHHST-TSCEEEEEBG-GGTBCCC
T ss_pred             -CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCC-CHHHHHHHHHHHHhhCC-CCcEEEEecC-ccCCCcC
Confidence             9999999999999999999999999999999999999999 8 99999999999999 78 8999999999 9999885

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=99.97  E-value=4.5e-32  Score=243.51  Aligned_cols=125  Identities=29%  Similarity=0.395  Sum_probs=114.4

Q ss_pred             ccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          88 VVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        88 ~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      +++||++.+.++++|+                     ++ |+.|++++|||||+++||.+||+++++.+++.++|    |
T Consensus        13 dg~iD~~~l~~lv~~l---------------------i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g----v   67 (286)
T 2r91_A           13 GGRLDPELFANHVKNI---------------------TSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR----V   67 (286)
T ss_dssp             TTEECHHHHHHHHHHH---------------------HHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS----E
T ss_pred             CCccCHHHHHHHHHHH---------------------HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC----E
Confidence            6677777777777766                     44 55688999999999999999999999999998753    9


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT-PASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~-~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|++++||+++++++++|+++|||++|+.||||++ + +++++++||++|++++ ++||||||+|.+||++|+
T Consensus        68 i~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~-s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~  139 (286)
T 2r91_A           68 IVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRL-SERQIAKYFRDLCSAV-SIPVFLYNYPAAVGRDVD  139 (286)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCSSTTC-CHHHHHHHHHHHHHHC-SSCEEEEECHHHHSSCCC
T ss_pred             EEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEeChhhcCCCCC
Confidence            999999999999999999999999999999999999 9 9999999999999999 899999999999999885

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=99.97  E-value=8.8e-32  Score=250.76  Aligned_cols=131  Identities=19%  Similarity=0.216  Sum_probs=120.5

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.++|
T Consensus        68 vTPF~~dg~ID~~al~~lv~~li--------------------~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~g  127 (360)
T 4dpp_A           68 KTPYLPDGRFDLEAYDDLVNIQI--------------------QNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG  127 (360)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             eCcCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCC
Confidence            555  678888888888888773                    2455689999999999999999999999999999999


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       |+|||+|+++++|+++++++++|+++|||++|+.||||+++ +++++++||++|+++   +||||||+|.+||++|+
T Consensus       128 -rvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~-sq~gl~~hf~~IA~a---~PiilYNiP~rTg~~ls  200 (360)
T 4dpp_A          128 -SIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKT-SIEGLIAHFQSVLHM---GPTIIYNVPGRTGQDIP  200 (360)
T ss_dssp             -TSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHTTGGG---SCEEEEECHHHHSCCCC
T ss_pred             -CCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHh---CCEEEEeCCcccCCCCC
Confidence             99999999999999999999999999999999999999999 999999999999996   59999999999999885

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=99.97  E-value=3.9e-31  Score=240.84  Aligned_cols=124  Identities=23%  Similarity=0.205  Sum_probs=113.5

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT  165 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp  165 (239)
                      ++++||++++.++++|+                     ++ |+.|++++|||||+++||.+||+++++.+++.+++ |+|
T Consensus        26 ~dg~iD~~~l~~lv~~l---------------------i~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvp   83 (314)
T 3d0c_A           26 GTREIDWKGLDDNVEFL---------------------LQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNG-RAT   83 (314)
T ss_dssp             TTCCBCHHHHHHHHHHH---------------------HHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSE
T ss_pred             CCCCCCHHHHHHHHHHH---------------------HHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCC-CCe
Confidence            35677777777777766                     44 45678999999999999999999999999999999 999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||+|+++ ||+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||   +||+ |+
T Consensus        84 ViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn---~tg~-l~  150 (314)
T 3d0c_A           84 VVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYI-TDAGAVEYYRNIIEAL-DAPSIIYF---KDAH-LS  150 (314)
T ss_dssp             EEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCC-CHHHHHHHHHHHHHHS-SSCEEEEE---CCTT-SC
T ss_pred             EEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEe---CCCC-cC
Confidence            9999999 999999999999999999999999999999 9999999999999999 79999999   8888 75

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=99.96  E-value=1.1e-30  Score=237.76  Aligned_cols=123  Identities=19%  Similarity=0.135  Sum_probs=113.5

Q ss_pred             ccc--c-ccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhc
Q psy9602          84 AHG--E-VVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAK  160 (239)
Q Consensus        84 ~~p--~-~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~  160 (239)
                      ++|  + +++||++++.++++|++                    -.|+.|++++|||||+++||.+||+++++.+++.++
T Consensus        20 vTPf~~~dg~iD~~~l~~lv~~li--------------------~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~   79 (316)
T 3e96_A           20 ITPFRKSDGSIDWHHYKETVDRIV--------------------DNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVH   79 (316)
T ss_dssp             CCCBCTTTCCBCHHHHHHHHHHHH--------------------TTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT
T ss_pred             eCCccCCCCCCCHHHHHHHHHHHH--------------------HcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC
Confidence            455  6 78888888888888873                    245567899999999999999999999999999999


Q ss_pred             CCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         161 THGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       161 G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      | |+|||+|+++ +|+++++++++|+++|||++|+.||||+++ +++++++||++|++++ ++||||||+
T Consensus        80 g-rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~-~lPiilYn~  145 (316)
T 3e96_A           80 G-RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYV-TAGGVYAYFRDIIEAL-DFPSLVYFK  145 (316)
T ss_dssp             T-SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCC-CHHHHHHHHHHHHHHH-TSCEEEEEC
T ss_pred             C-CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEeC
Confidence            9 9999999997 999999999999999999999999999999 9999999999999999 799999997

>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}

Probab=99.96  E-value=2.9e-31  Score=238.13  Aligned_cols=127  Identities=24%  Similarity=0.330  Sum_probs=116.0

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++.+.++++|+                     ++.+.|++++|||||+++||.+||.++++.+++    
T Consensus         7 vTPf~~dg~iD~~~l~~lv~~l---------------------i~~v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~----   61 (283)
T 2pcq_A            7 PTPFDREGRLDEEAFRELAQAL---------------------EPLVDGLLVYGSNGEGVHLTPEERARGLRALRP----   61 (283)
T ss_dssp             CCCBCTTCCBCHHHHHHHHHHH---------------------GGGSSCCEETCTTTTGGGSCHHHHHHHHHTCCC----
T ss_pred             eCCCCCCCCcCHHHHHHHHHHH---------------------HhhCCEEEECCcCcCchhcCHHHHHHHHHHHHh----
Confidence            456  68899999998888888                     344668999999999999999999999999997    


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ++|||+|++++||+++++++++|+++|||++|+.||||+++.+++++++||++|++   ++||||||+|.+||++|+
T Consensus        62 -rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~---~lPiilYn~P~~tg~~l~  135 (283)
T 2pcq_A           62 -RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSLGAGLLRYYEALAE---KMPLFLYHVPQNTKVDLP  135 (283)
T ss_dssp             -SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHH---HSCEEEEECHHHHCCCCC
T ss_pred             -CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhc---CCCEEEEeCccccCcCCC
Confidence             58999999999999999999999999999999999999875478999999999999   599999999999999885

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=96.99  E-value=0.0044  Score=55.34  Aligned_cols=107  Identities=11%  Similarity=0.063  Sum_probs=83.4

Q ss_pred             HHhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCHHHHHHHHHHH
Q psy9602         121 ITLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---------GTCFQEVVELAKHA  185 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGVg---------~~St~eAIelar~A  185 (239)
                      ++..++.|.. +.++.+++|.     ..+|.+|-.+.++.+++.+....+.|-+.++         ..+.+.++++++.+
T Consensus        89 i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~  168 (302)
T 2ftp_A           89 FEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVAREL  168 (302)
T ss_dssp             HHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHH
Confidence            3444555555 5577788875     4589999999999999887764566643322         25789999999999


Q ss_pred             HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         186 ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       186 ~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      .+.|+|.+.+..-+.+ . ++.++.+.++.|.+..|++||.++-
T Consensus       169 ~~~G~d~i~l~DT~G~-~-~P~~~~~lv~~l~~~~~~~~l~~H~  210 (302)
T 2ftp_A          169 QQMGCYEVSLGDTIGV-G-TAGATRRLIEAVASEVPRERLAGHF  210 (302)
T ss_dssp             HHTTCSEEEEEESSSC-C-CHHHHHHHHHHHTTTSCGGGEEEEE
T ss_pred             HHcCCCEEEEeCCCCC-c-CHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999999998876654 3 7899999999999999779998874

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=96.73  E-value=0.016  Score=51.44  Aligned_cols=109  Identities=15%  Similarity=0.093  Sum_probs=83.8

Q ss_pred             HHhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCHHHHHHHHHHH
Q psy9602         121 ITLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---------GTCFQEVVELAKHA  185 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGVg---------~~St~eAIelar~A  185 (239)
                      ++...+.|.. +-++++++|.     ...|.+|-.+.+..+++.++....+|.+.+.         ..+.+..+++++.+
T Consensus        86 i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~  165 (298)
T 2cw6_A           86 FEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKF  165 (298)
T ss_dssp             HHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHH
Confidence            4444555655 4588888887     4678899888888888876654567765443         34799999999999


Q ss_pred             HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         186 ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       186 ~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      .++||+.+.+..-..+ . +++++.+.++.+.+..|++||-++-..
T Consensus       166 ~~~Ga~~i~l~DT~G~-~-~P~~~~~lv~~l~~~~~~~~i~~H~Hn  209 (298)
T 2cw6_A          166 YSMGCYEISLGDTIGV-G-TPGIMKDMLSAVMQEVPLAALAVHCHD  209 (298)
T ss_dssp             HHTTCSEEEEEETTSC-C-CHHHHHHHHHHHHHHSCGGGEEEEEBC
T ss_pred             HHcCCCEEEecCCCCC-c-CHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            9999999988865543 2 789999999999999977888886443

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=96.63  E-value=0.016  Score=51.18  Aligned_cols=107  Identities=22%  Similarity=0.124  Sum_probs=80.7

Q ss_pred             HHhhhcCCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEE--ec-------CCCCHHHHHHHHHHH
Q psy9602         121 ITLRMAPIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMV--QI-------GGTCFQEVVELAKHA  185 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIa--GV-------g~~St~eAIelar~A  185 (239)
                      ++..++.|.. +.+..+++|.+     .+|.+|-.+.++.+++.+....++|.+  +.       +..+.++++++++.+
T Consensus        85 i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~  164 (295)
T 1ydn_A           85 YEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQL  164 (295)
T ss_dssp             HHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHH
Confidence            4444555554 55665555433     578999988888888877654577763  32       245899999999999


Q ss_pred             HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         186 ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       186 ~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      .+.|+|.+.+...... . +++++.+.++.|.+..|++|+.++-
T Consensus       165 ~~~G~d~i~l~Dt~G~-~-~P~~~~~lv~~l~~~~~~~~l~~H~  206 (295)
T 1ydn_A          165 FSLGCHEVSLGDTIGR-G-TPDTVAAMLDAVLAIAPAHSLAGHY  206 (295)
T ss_dssp             HHHTCSEEEEEETTSC-C-CHHHHHHHHHHHHTTSCGGGEEEEE
T ss_pred             HhcCCCEEEecCCCCC-c-CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            9999999999977665 3 7899999999999999558888774

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=96.45  E-value=0.026  Score=51.27  Aligned_cols=106  Identities=11%  Similarity=0.029  Sum_probs=81.7

Q ss_pred             HHhhhcCCCCE-EEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEecCC------CCHHHHHHHHHHHHhC
Q psy9602         121 ITLRMAPIIDQ-MVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG------TCFQEVVELAKHAESL  188 (239)
Q Consensus       121 v~~~~~gg~gl-vV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGVg~------~St~eAIelar~A~~a  188 (239)
                      ++..++.+.+. -++.+++|.     ...|.+|-.+.+..+++.++.....|.+++..      .+.+..+++++.+.++
T Consensus       102 i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (337)
T 3ble_A          102 VDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKE  181 (337)
T ss_dssp             HHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHc
Confidence            44445555554 488888886     46788888888888887766545677766544      4578899999999999


Q ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         189 NVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       189 GAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      ||+.+.+..-....  +++++.+.++.|.+..|++||-++
T Consensus       182 Ga~~i~l~DT~G~~--~P~~v~~lv~~l~~~~p~~~i~~H  219 (337)
T 3ble_A          182 HIERIFLPDTLGVL--SPEETFQGVDSLIQKYPDIHFEFH  219 (337)
T ss_dssp             CCSEEEEECTTCCC--CHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCCEEEEecCCCCc--CHHHHHHHHHHHHHhcCCCeEEEE
Confidence            99999887655432  789999999999999988888775

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=96.41  E-value=0.024  Score=51.05  Aligned_cols=106  Identities=12%  Similarity=0.088  Sum_probs=80.3

Q ss_pred             HHhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCHHHHHHHHHHH
Q psy9602         121 ITLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---------GTCFQEVVELAKHA  185 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGVg---------~~St~eAIelar~A  185 (239)
                      ++..++.+.. +-++.+++|.     ...|.+|-.+.++.+++.++.....|.+.+.         ..+.+..+++++.+
T Consensus        87 i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~  166 (307)
T 1ydo_A           87 LENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEAL  166 (307)
T ss_dssp             HHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHH
Confidence            4444555555 4588888875     5678999888888888776653456643332         25789999999999


Q ss_pred             HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         186 ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       186 ~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++|++.+.+..-..+ . +++++.+.++.|.+..|++||-++
T Consensus       167 ~~~Ga~~i~l~DT~G~-~-~P~~v~~lv~~l~~~~~~~~l~~H  207 (307)
T 1ydo_A          167 FEFGISELSLGDTIGA-A-NPAQVETVLEALLARFPANQIALH  207 (307)
T ss_dssp             HHHTCSCEEEECSSCC-C-CHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred             HhcCCCEEEEcCCCCC-c-CHHHHHHHHHHHHHhCCCCeEEEE
Confidence            9999999988876543 2 789999999999999877888776

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}

Probab=96.27  E-value=0.069  Score=50.98  Aligned_cols=95  Identities=17%  Similarity=0.240  Sum_probs=72.9

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEecCC-------------------------------CCHHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQIGG-------------------------------TCFQEVVE  180 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~-------------------------------~St~eAIe  180 (239)
                      +|+.+--...+.+|-.+-|+.++++.+  |...-|++=+-+                               .+++++|+
T Consensus       196 CGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~IiARTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~  275 (439)
T 3i4e_A          196 CGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVARTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAIS  275 (439)
T ss_dssp             CSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHH
T ss_pred             cCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCcccccccccccccccchhhcccCcccccccccCCHHHHHH
Confidence            367666778899998888888887652  214555554433                               56999999


Q ss_pred             HHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC-CCCc
Q psy9602         181 LAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI-PMFT  234 (239)
Q Consensus       181 lar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~-P~~T  234 (239)
                      .++.+.+ |||.|.+-|+.   + +.+++..+-+.|....| .+++.||. |.++
T Consensus       276 Ra~AY~~-GAD~if~E~~~---~-~~eei~~f~~~v~~~~P-~~~l~~~~sPsfn  324 (439)
T 3i4e_A          276 RGLAYAP-YADLIWCETGK---P-DLEYAKKFAEAIHKQFP-GKLLSYNCSPSFN  324 (439)
T ss_dssp             HHHHHTT-TCSEEEECCSS---C-CHHHHHHHHHHHHHHST-TCEEEEECCSSSC
T ss_pred             HHHHHHh-hCCEEEecCCC---C-CHHHHHHHHHHhcccCC-ceEEeeCCCCCCc
Confidence            9999998 99999997642   4 88999999999988785 78888987 6554

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A

Probab=96.07  E-value=0.082  Score=50.40  Aligned_cols=94  Identities=19%  Similarity=0.226  Sum_probs=72.1

Q ss_pred             ccccCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEecCC-------------------------------CCHHHHHHH
Q psy9602         135 GTTGEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQIGG-------------------------------TCFQEVVEL  181 (239)
Q Consensus       135 GstGE~~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~-------------------------------~St~eAIel  181 (239)
                      |+.+.-...+.+|-.+-|+.++++.+  +..+-|++=+-+                               .+++++|+.
T Consensus       197 Gh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~IiARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~R  276 (435)
T 3lg3_A          197 GHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLLIARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISR  276 (435)
T ss_dssp             STTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHH
T ss_pred             CCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCCccccccccccccccchhhcccccccccccccCCHHHHHHH
Confidence            66666677899998888888877652  214556654443                               679999999


Q ss_pred             HHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC-CCCc
Q psy9602         182 AKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI-PMFT  234 (239)
Q Consensus       182 ar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~-P~~T  234 (239)
                      ++.+.+ |||.|.+-|+   .+ +.+++..+-+.|....| .+++.||. |.++
T Consensus       277 a~AY~~-GAD~if~E~~---~~-~~~ei~~f~~~v~~~~P-~~~La~~~sPsfn  324 (435)
T 3lg3_A          277 GLAYAP-YADLVWCETS---TP-DLALAKRFADAVHAQFP-GKLLAYNCSPSFN  324 (435)
T ss_dssp             HHHHGG-GCSEEEECCS---SC-CHHHHHHHHHHHHHHST-TCEEEEECCSSSC
T ss_pred             HHHHHc-cCCEEEecCC---CC-CHHHHHHHHHHhccccC-CeEEEeCCCCCcc
Confidence            999999 9999999764   24 88999999999988785 77888887 6553

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*

Probab=96.00  E-value=0.068  Score=50.93  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=70.0

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEecCC---------------------------------CCHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQIGG---------------------------------TCFQEV  178 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~---------------------------------~St~eA  178 (239)
                      +|+.+--...+.+|-.+=|++++++..  +...-||+=+-+                                 .+++++
T Consensus       189 CGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vIiARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~gld~A  268 (433)
T 3eol_A          189 CGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPC  268 (433)
T ss_dssp             -----CCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHH
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCccccccccCcccccccceeccCcccccccccccCCHHHH
Confidence            356666677899998888888887764  325556664432                                 579999


Q ss_pred             HHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC-CCCc
Q psy9602         179 VELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI-PMFT  234 (239)
Q Consensus       179 Ielar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~-P~~T  234 (239)
                      |+.++.+.+ |||.|.+-++   .+ +.+++..+-+.|....| .+++.||. |.++
T Consensus       269 I~Ra~AY~~-GAD~If~e~~---~~-~~eei~~f~~~v~~~~P-~~~L~~~~sPsfn  319 (433)
T 3eol_A          269 IARAIAYAP-YCDLIWMETS---KP-DLAQARRFAEAVHKAHP-GKLLAYNCSPSFN  319 (433)
T ss_dssp             HHHHHHHGG-GCSEEEECCS---SC-CHHHHHHHHHHHHHHST-TCCEEEECCSSSC
T ss_pred             HHHHHHHHh-cCCEEEEeCC---CC-CHHHHHHHHHHhcccCC-CcccccCCCCCCc
Confidence            999999999 9999999764   34 88999999999988785 77788887 5543

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=95.92  E-value=0.07  Score=48.02  Aligned_cols=103  Identities=9%  Similarity=0.005  Sum_probs=72.2

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC--------CCH-HHHHHHHHHHHhCCC
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG--------TCF-QEVVELAKHAESLNV  190 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~--------~St-~eAIelar~A~~aGA  190 (239)
                      ++..++.|...+ +++..+  ...+..|..+.++.+++.+...++|+++-+..        .+. +-..+.++.+.++|+
T Consensus       114 ve~a~~~GAdaV~vlv~~~--~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGa  191 (304)
T 1to3_A          114 AQAVKRDGAKALKLLVLWR--SDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGA  191 (304)
T ss_dssp             HHHHHHTTCCEEEEEEEEC--TTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHcCCCEEEEEEEcC--CCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCC
Confidence            566677777654 666555  33445888888888888877667998885531        223 334445999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc-EEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP-LFY  227 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP-IiL  227 (239)
                      |.+=+-+|.+-.. +.+++.+.++.....+ ++| |++
T Consensus       192 D~iKv~~~~~~~g-~~~~~~~vv~~~~~~~-~~P~Vv~  227 (304)
T 1to3_A          192 DLYKVEMPLYGKG-ARSDLLTASQRLNGHI-NMPWVIL  227 (304)
T ss_dssp             SEEEECCGGGGCS-CHHHHHHHHHHHHHTC-CSCEEEC
T ss_pred             CEEEeCCCcCCCC-CHHHHHHHHHhccccC-CCCeEEE
Confidence            9988888765323 6778877777777768 789 653

>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A

Probab=95.35  E-value=0.24  Score=47.09  Aligned_cols=95  Identities=17%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEecCC-------------------------------CCHHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQIGG-------------------------------TCFQEVVE  180 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~-------------------------------~St~eAIe  180 (239)
                      +|+.+--...+.+|-.+=|+.++++.+  |...-||+=+-+                               .+++++|+
T Consensus       192 CGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~d~vIiARTDa~~a~li~s~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~  271 (429)
T 1f8m_A          192 CGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIA  271 (429)
T ss_dssp             CTTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHHH
T ss_pred             ccCCCCCeeeCHHHHHHHHHHHHHHHHhcCCCEEEEEEechhhhccccccccccccccccCCCCcccccccccCHHHHHH
Confidence            466666677899999999999988763  214455553333                               57899999


Q ss_pred             HHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC-CCCc
Q psy9602         181 LAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI-PMFT  234 (239)
Q Consensus       181 lar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~-P~~T  234 (239)
                      .++.+.+ |||.+.+-++.   + +.+++..+-+.|....| ..++.||. |.++
T Consensus       272 Ra~AYa~-gAD~if~e~~~---~-~~eei~~f~~~v~~~~P-~~~La~n~sPsf~  320 (429)
T 1f8m_A          272 RAKAYAP-FADLIWMETGT---P-DLEAARQFSEAVKAEYP-DQMLAYNCSPSFN  320 (429)
T ss_dssp             HHHHHGG-GCSEEEECCSS---C-CHHHHHHHHHHHHTTCT-TCEEEEECCTTSC
T ss_pred             HHHHHHh-cCCEEEeCCCC---C-CHHHHHHHHHHhcccCC-CceeecCCCCCCC
Confidence            9999999 99999986432   4 78999999999976565 33677887 5544

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=95.25  E-value=0.13  Score=46.25  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=56.5

Q ss_pred             Eecccc--CCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC----CCCHHHHHHHHHHHHhCCCCEEEECC-CCCCCCCC
Q psy9602         133 VNGTTG--EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG----GTCFQEVVELAKHAESLNVHAVLCLP-ELFFTPAS  205 (239)
Q Consensus       133 V~GstG--E~~sLT~eER~~li~~vve~~~G~rvpVIaGVg----~~St~eAIelar~A~~aGAdaVlV~P-P~y~~~~s  205 (239)
                      ++|+.|  --...+.+|..+-|+.++++......-|++=+-    ..+.+++|+.++.++++|||++++-- +    + +
T Consensus       117 ~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~----~-~  191 (290)
T 2hjp_A          117 DTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ----K-T  191 (290)
T ss_dssp             CC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCC----S-S
T ss_pred             cccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCC----C-C
Confidence            456666  455677888888999998875321455555332    23489999999999999999999864 3    2 4


Q ss_pred             HHHHHHHHHHHHhhCCC--CcEEE
Q psy9602         206 VEDLVDYLRDVGEAAPA--TPLFY  227 (239)
Q Consensus       206 ~e~iv~yf~~Vaeatpd--LPIiL  227 (239)
                      .+++    +.++++. +  +|+++
T Consensus       192 ~~~~----~~i~~~~-~~~vP~i~  210 (290)
T 2hjp_A          192 PDEI----LAFVKSW-PGKVPLVL  210 (290)
T ss_dssp             SHHH----HHHHHHC-CCSSCEEE
T ss_pred             HHHH----HHHHHHc-CCCCCEEE
Confidence            4655    5556666 4  89886

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=95.12  E-value=0.26  Score=42.31  Aligned_cols=92  Identities=17%  Similarity=0.132  Sum_probs=62.2

Q ss_pred             HHhhhcCCCCEE---E-eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC--------CCCHHHHHHHHHHHHhC
Q psy9602         121 ITLRMAPIIDQM---V-NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG--------GTCFQEVVELAKHAESL  188 (239)
Q Consensus       121 v~~~~~gg~glv---V-~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg--------~~St~eAIelar~A~~a  188 (239)
                      ++..++.|...+   + .|      .++.+|..+.++.+++.+...++|+++.+.        ..+..+..+.++.|+++
T Consensus       105 v~~a~~~Ga~~v~~~l~~~------~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~  178 (273)
T 2qjg_A          105 VEEAIRMGADAVSIHVNVG------SDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAEL  178 (273)
T ss_dssp             HHHHHHTTCSEEEEEEEET------STTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCEEEEEEecC------CCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHc
Confidence            344456666544   2 34      347788888888887776533588888652        13455555566999999


Q ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         189 NVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       189 GAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      |+|.+.+.+|    . +    .++++.+.+.+ ++||+..
T Consensus       179 Gad~i~~~~~----~-~----~~~l~~i~~~~-~ipvva~  208 (273)
T 2qjg_A          179 GADIVKTSYT----G-D----IDSFRDVVKGC-PAPVVVA  208 (273)
T ss_dssp             TCSEEEECCC----S-S----HHHHHHHHHHC-SSCEEEE
T ss_pred             CCCEEEECCC----C-C----HHHHHHHHHhC-CCCEEEE
Confidence            9999888753    2 3    45677888888 7999874

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}

Probab=95.04  E-value=0.3  Score=43.49  Aligned_cols=100  Identities=10%  Similarity=0.003  Sum_probs=78.1

Q ss_pred             CCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602         127 PIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLP  197 (239)
Q Consensus       127 gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~P  197 (239)
                      .+.. +-++.+++|.+     ..|.+|-.+.++.+++.++.....|.++..   ..+.+..+++++.+.++|++.+.+..
T Consensus        92 ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~D  171 (293)
T 3ewb_X           92 AVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPD  171 (293)
T ss_dssp             CSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence            3443 55888999875     789999999999888877654456666543   36888899999999999999988877


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCC---CcEEEE
Q psy9602         198 ELFFTPASVEDLVDYLRDVGEAAPA---TPLFYY  228 (239)
Q Consensus       198 P~y~~~~s~e~iv~yf~~Vaeatpd---LPIiLY  228 (239)
                      -....  ++.++.+.++.+.+..|+   +||-++
T Consensus       172 T~G~~--~P~~v~~lv~~l~~~~~~~~~~~l~~H  203 (293)
T 3ewb_X          172 TVGYT--NPTEFGQLFQDLRREIKQFDDIIFASH  203 (293)
T ss_dssp             SSSCC--CHHHHHHHHHHHHHHCTTGGGSEEEEE
T ss_pred             CCCCC--CHHHHHHHHHHHHHhcCCccCceEEEE
Confidence            65442  789999999999999864   556554

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=94.97  E-value=0.24  Score=44.95  Aligned_cols=84  Identities=14%  Similarity=0.101  Sum_probs=56.7

Q ss_pred             ccccCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         135 GTTGEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       135 GstGE~~sLT~eER~~li~~vve~~~--G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      |+.+--...+.+|..+=|+.++++.+  +.++-|++=+-   ..+.+++|+.++.+.++|||++.+.-+    . +.+++
T Consensus       124 gh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~----~-~~~ei  198 (302)
T 3fa4_A          124 GHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGI----T-SREMA  198 (302)
T ss_dssp             ----CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTC----C-CHHHH
T ss_pred             CCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCC----C-CHHHH
Confidence            33344567789999888888888753  21455665432   246899999999999999999988653    2 56666


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      ..    ++++.++.|+++
T Consensus       199 ~~----~~~~~~~~Pl~~  212 (302)
T 3fa4_A          199 RQ----VIQDLAGWPLLL  212 (302)
T ss_dssp             HH----HHHHTTTSCEEE
T ss_pred             HH----HHHHhcCCceeE
Confidence            54    444443478755

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=94.88  E-value=0.35  Score=44.68  Aligned_cols=100  Identities=7%  Similarity=-0.104  Sum_probs=80.0

Q ss_pred             CCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602         127 PIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLP  197 (239)
Q Consensus       127 gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~P  197 (239)
                      .+.. +-++.+++|.+     ..|.+|-.+.+..+++.+......|.++.   +..+.+.+++.++.+.++||+.+.+..
T Consensus        99 ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~D  178 (370)
T 3rmj_A           99 APKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPD  178 (370)
T ss_dssp             SSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEEEecC
Confidence            4554 45888999864     68999999999888888776445666664   567889999999999999999988887


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCC---CcEEEE
Q psy9602         198 ELFFTPASVEDLVDYLRDVGEAAPA---TPLFYY  228 (239)
Q Consensus       198 P~y~~~~s~e~iv~yf~~Vaeatpd---LPIiLY  228 (239)
                      -..+.  ++.++.+.++.+.+..|+   +||-++
T Consensus       179 T~G~~--~P~~~~~lv~~l~~~~~~~~~~~l~~H  210 (370)
T 3rmj_A          179 TVGYS--IPYKTEEFFRELIAKTPNGGKVVWSAH  210 (370)
T ss_dssp             SSSCC--CHHHHHHHHHHHHHHSTTGGGSEEEEE
T ss_pred             ccCCc--CHHHHHHHHHHHHHhCCCcCceEEEEE
Confidence            65443  789999999999999865   777665

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=94.47  E-value=0.46  Score=43.07  Aligned_cols=111  Identities=12%  Similarity=0.120  Sum_probs=70.4

Q ss_pred             HHHHhhHHhhhcCCCCEE-Eecccc--------C-------CcCCCHHHHH----HHHHHHHHHhcCCCceEEEecC---
Q psy9602         115 CMLLVGITLRMAPIIDQM-VNGTTG--------E-------GVSMTTAERK----LNLEAWMTEAKTHGFTVMVQIG---  171 (239)
Q Consensus       115 ~~l~~~v~~~~~gg~glv-V~GstG--------E-------~~sLT~eER~----~li~~vve~~~G~rvpVIaGVg---  171 (239)
                      ..++.......+.|-+.+ +.+..|        -       -+-=|.+.|.    ++++.+.+.++. +.||.+=++   
T Consensus       152 ~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~-d~pV~vRls~~~  230 (349)
T 3hgj_A          152 QAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPR-ELPLFVRVSATD  230 (349)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCT-TSCEEEEEESCC
T ss_pred             HHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcC-CceEEEEecccc
Confidence            345444445555555444 666553        1       1122566664    566666666665 678888555   


Q ss_pred             ----CCCHHHHHHHHHHHHhCCCCEEEECCCCCCC----CCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         172 ----GTCFQEVVELAKHAESLNVHAVLCLPELFFT----PASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       172 ----~~St~eAIelar~A~~aGAdaVlV~PP~y~~----~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                          +.+.++++++++..+++|+|.+-+....+..    +..+..-.++.+.|.+.+ ++||+.
T Consensus       231 ~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~  293 (349)
T 3hgj_A          231 WGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV-GLRTGA  293 (349)
T ss_dssp             CSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH-CCEEEE
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc-CceEEE
Confidence                3578999999999999999999998432211    001122356778888888 799875

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=94.31  E-value=0.33  Score=44.59  Aligned_cols=108  Identities=14%  Similarity=0.094  Sum_probs=76.5

Q ss_pred             eEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHH
Q psy9602         102 WTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVEL  181 (239)
Q Consensus       102 W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIel  181 (239)
                      +-++..|+..-....|+..  ....+|.+++.       ..++.++..+.++.+.+.  + +.|+.++++...    .+.
T Consensus        46 ~Pii~apM~~vt~~~lA~a--vA~~GGlgii~-------~~~s~e~~~~~I~~vk~~--~-~~pvga~ig~~~----~e~  109 (361)
T 3khj_A           46 IPLISSAMDTVTEHLMAVG--MARLGGIGIIH-------KNMDMESQVNEVLKVKNS--G-GLRVGAAIGVNE----IER  109 (361)
T ss_dssp             SSEEECSSTTTCSHHHHHH--HHHTTCEEEEC-------SSSCHHHHHHHHHHHHHT--T-CCCCEEEECTTC----HHH
T ss_pred             CCEEeecCCCCCcHHHHHH--HHHcCCCeEEe-------cCCCHHHHHHHHHHHHhc--c-CceEEEEeCCCH----HHH
Confidence            3455556665544455432  23456655542       268999999999988765  3 678888887765    788


Q ss_pred             HHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         182 AKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       182 ar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      ++.+.++|+|.+.|-.++.    +.+.+.+..+.+.+.. ++||++-|.
T Consensus       110 a~~l~eaGad~I~ld~a~G----~~~~~~~~i~~i~~~~-~~~Vivg~v  153 (361)
T 3khj_A          110 AKLLVEAGVDVIVLDSAHG----HSLNIIRTLKEIKSKM-NIDVIVGNV  153 (361)
T ss_dssp             HHHHHHTTCSEEEECCSCC----SBHHHHHHHHHHHHHC-CCEEEEEEE
T ss_pred             HHHHHHcCcCeEEEeCCCC----CcHHHHHHHHHHHHhc-CCcEEEccC
Confidence            8899999999998865542    3367778888888888 899998654

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=94.16  E-value=0.37  Score=43.80  Aligned_cols=85  Identities=14%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEecCC---CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQIGG---TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVED  208 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~---~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~  208 (239)
                      +|+.+.-...+.+|..+-|+.++++.+  +.+.-|++=+-+   .+.+++|+.++.+.++|||++++--+    + +.++
T Consensus       131 cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~----~-~~~~  205 (307)
T 3lye_A          131 CGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEGF----R-SKEQ  205 (307)
T ss_dssp             -------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCC----S-CHHH
T ss_pred             cCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCC----C-CHHH
Confidence            455555567899998888888887753  214555553332   46789999999999999999988643    3 6677


Q ss_pred             HHHHHHHHHhhCCCCcEEE
Q psy9602         209 LVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       209 iv~yf~~VaeatpdLPIiL  227 (239)
                      +..+-+.+.    +.|+++
T Consensus       206 ~~~i~~~~~----~~Pv~~  220 (307)
T 3lye_A          206 AAAAVAALA----PWPLLL  220 (307)
T ss_dssp             HHHHHHHHT----TSCBEE
T ss_pred             HHHHHHHcc----CCceeE
Confidence            776655553    367643

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=93.88  E-value=0.87  Score=39.91  Aligned_cols=68  Identities=15%  Similarity=0.075  Sum_probs=55.5

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCC-EEEECC--CCC-----CCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVH-AVLCLP--ELF-----FTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAd-aVlV~P--P~y-----~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      ..|+++++.+.+.++..+.++.+++.|+| ++-+--  |..     +.. +.+.+.+.+++|.+++ ++||++==.|.
T Consensus        93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~-~~e~~~~iv~~vr~~~-~~Pv~vKi~~~  168 (311)
T 1jub_A           93 EGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAY-DFEATEKLLKEVFTFF-TKPLGVKLPPY  168 (311)
T ss_dssp             SSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGG-CHHHHHHHHHHHTTTC-CSCEEEEECCC
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccC-CHHHHHHHHHHHHHhc-CCCEEEEECCC
Confidence            47999999999999999999999999999 887732  332     112 6788899999999988 89999865554

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=93.86  E-value=0.32  Score=42.38  Aligned_cols=64  Identities=14%  Similarity=0.174  Sum_probs=50.1

Q ss_pred             ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-----------------CHHHHHHHHHHHHhhCCCCcEEE--Ee
Q psy9602         169 QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-----------------SVEDLVDYLRDVGEAAPATPLFY--YH  229 (239)
Q Consensus       169 GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-----------------s~e~iv~yf~~VaeatpdLPIiL--YN  229 (239)
                      -.+..+.+++++.++..++.|+|++.+--|+.-+..                 +.+.+++..+++.+.+|++|+++  |.
T Consensus        24 ~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~  103 (262)
T 2ekc_A           24 MVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYY  103 (262)
T ss_dssp             ETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCH
T ss_pred             cCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecC
Confidence            377889999999999999999999999988742110                 22446677888888877899999  66


Q ss_pred             CCC
Q psy9602         230 IPM  232 (239)
Q Consensus       230 ~P~  232 (239)
                      +|.
T Consensus       104 n~v  106 (262)
T 2ekc_A          104 NPI  106 (262)
T ss_dssp             HHH
T ss_pred             cHH
Confidence            663

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=93.70  E-value=0.56  Score=42.13  Aligned_cols=77  Identities=10%  Similarity=0.107  Sum_probs=58.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602         142 SMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA  219 (239)
Q Consensus       142 sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea  219 (239)
                      ..+.+|..+-|+.++++..+...-|++=+  ...+.+++|+.++.++++|||++++--+    + +.+++    +.++++
T Consensus       132 l~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~----~-~~~~~----~~i~~~  202 (287)
T 3b8i_A          132 LICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGV----R-DFAHL----EAIAEH  202 (287)
T ss_dssp             BCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECC----C-SHHHH----HHHHTT
T ss_pred             ccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecCC----C-CHHHH----HHHHHh
Confidence            88999999999999998654245555532  2345689999999999999999998742    3 44444    566777


Q ss_pred             CCCCcEEEE
Q psy9602         220 APATPLFYY  228 (239)
Q Consensus       220 tpdLPIiLY  228 (239)
                      . ++|+++-
T Consensus       203 ~-~~P~ii~  210 (287)
T 3b8i_A          203 L-HIPLMLV  210 (287)
T ss_dssp             C-CSCEEEE
T ss_pred             C-CCCEEEe
Confidence            8 7999853

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=93.69  E-value=0.53  Score=42.96  Aligned_cols=85  Identities=13%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC---CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG---TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~---~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      ++|+.|--...+.+|..+-|+.++++......-|++=+-+   .+++++|+.++.++++|||++++--+    + +.+++
T Consensus       143 ~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~----~-~~e~~  217 (318)
T 1zlp_A          143 KCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEAP----A-NVDEL  217 (318)
T ss_dssp             CCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC----C-SHHHH
T ss_pred             cccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCC----C-CHHHH
Confidence            4566665567888999999999999874314455543322   22479999999999999999998643    3 44544


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                          +.++++. ++|+++
T Consensus       218 ----~~i~~~l-~~P~la  230 (318)
T 1zlp_A          218 ----KEVSAKT-KGLRIA  230 (318)
T ss_dssp             ----HHHHHHS-CSEEEE
T ss_pred             ----HHHHHhc-CCCEEE
Confidence                5566777 689866

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=93.48  E-value=0.26  Score=43.38  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCC---EEEECC--CCC-----CCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVH---AVLCLP--ELF-----FTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAd---aVlV~P--P~y-----~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      ..|+++++.+.+.++..+.++.+++.|+|   ++-+-.  |..     +.. +.+.+.+..++|.+++ ++||++=-.|.
T Consensus        93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~-~~~~~~~ii~~vr~~~-~~Pv~vK~~~~  170 (314)
T 2e6f_A           93 KKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAY-DFEAMRTYLQQVSLAY-GLPFGVKMPPY  170 (314)
T ss_dssp             TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGG-SHHHHHHHHHHHHHHH-CSCEEEEECCC
T ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcC-CHHHHHHHHHHHHHhc-CCCEEEEECCC
Confidence            57999999999999999999999999999   777743  332     111 6678889999999988 89999865554

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=93.43  E-value=0.45  Score=43.00  Aligned_cols=84  Identities=11%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV  210 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv  210 (239)
                      +|+.+--...+.+|-.+-|+.++++..+.+.-|++=+-   ..+++++|+.++.+.++|||++.+-.+    . +.+++.
T Consensus       126 cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~----~-~~ee~~  200 (298)
T 3eoo_A          126 CGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAM----K-TLDDYR  200 (298)
T ss_dssp             TTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC----C-SHHHHH
T ss_pred             cCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCC----C-CHHHHH
Confidence            45555566789999999999999887542455555332   235789999999999999999998754    3 667776


Q ss_pred             HHHHHHHhhCCCCcEEE
Q psy9602         211 DYLRDVGEAAPATPLFY  227 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiL  227 (239)
                      .+-+.    . +.|+++
T Consensus       201 ~~~~~----~-~~Pl~~  212 (298)
T 3eoo_A          201 RFKEA----V-KVPILA  212 (298)
T ss_dssp             HHHHH----H-CSCBEE
T ss_pred             HHHHH----c-CCCeEE
Confidence            55444    4 467654

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=93.13  E-value=0.44  Score=43.89  Aligned_cols=80  Identities=9%  Similarity=-0.005  Sum_probs=53.4

Q ss_pred             CHHHHH----HHHHHHHHHhcCCCceEEEecCC----------CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         144 TTAERK----LNLEAWMTEAKTHGFTVMVQIGG----------TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       144 T~eER~----~li~~vve~~~G~rvpVIaGVg~----------~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      |.+.|.    ++++.+.+.++. + ||.+=++.          .+.++++++++.+++.|+|++-+..+.+... ....-
T Consensus       211 slenR~r~~~eiv~aVr~avg~-~-~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~-~~~~~  287 (377)
T 2r14_A          211 SIENRARFPLEVVDAVAEVFGP-E-RVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGG-DITYP  287 (377)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCG-G-GEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC-------CCC
T ss_pred             chhhchHHHHHHHHHHHHHcCC-C-cEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCC-CCcch
Confidence            456664    455666666654 4 88775543          3468899999999999999999987643211 00012


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      .++.+.|.+++ ++||+.
T Consensus       288 ~~~~~~ik~~~-~iPvi~  304 (377)
T 2r14_A          288 EGFREQMRQRF-KGGLIY  304 (377)
T ss_dssp             TTHHHHHHHHC-CSEEEE
T ss_pred             HHHHHHHHHHC-CCCEEE
Confidence            45677888888 899886

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=92.84  E-value=0.88  Score=41.58  Aligned_cols=79  Identities=8%  Similarity=-0.012  Sum_probs=52.5

Q ss_pred             CHHHHHH----HHHHHHHHhcCCCceEEEecC-----------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH
Q psy9602         144 TTAERKL----NLEAWMTEAKTHGFTVMVQIG-----------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVED  208 (239)
Q Consensus       144 T~eER~~----li~~vve~~~G~rvpVIaGVg-----------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~  208 (239)
                      |.+.|.+    +++.+.+.++. + ||.+=++           ..+.++++++++.+++.|+|.+-+..+.+.....  .
T Consensus       206 slenr~r~~~eiv~avr~~vg~-~-~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~  281 (364)
T 1vyr_A          206 SVENRARLVLEVVDAVCNEWSA-D-RIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKP--Y  281 (364)
T ss_dssp             SHHHHTHHHHHHHHHHHHHSCG-G-GEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCC--C
T ss_pred             chhcChhhHHHHHHHHHHhcCC-C-cEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCc--c
Confidence            3566644    45556666654 4 7777222           2267789999999999999999998754321101  1


Q ss_pred             HHHHHHHHHhhCCCCcEEE
Q psy9602         209 LVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       209 iv~yf~~VaeatpdLPIiL  227 (239)
                      -.++.+.|.+++ ++||+.
T Consensus       282 ~~~~~~~v~~~~-~iPvi~  299 (364)
T 1vyr_A          282 SEAFRQKVRERF-HGVIIG  299 (364)
T ss_dssp             CHHHHHHHHHHC-CSEEEE
T ss_pred             cHHHHHHHHHHC-CCCEEE
Confidence            135677888888 899875

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=92.68  E-value=0.23  Score=45.03  Aligned_cols=99  Identities=8%  Similarity=-0.147  Sum_probs=74.4

Q ss_pred             CCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602         128 IID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPE  198 (239)
Q Consensus       128 g~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP  198 (239)
                      +.. +-++.+++|.+     ..|.+|-.+.++.+++.++.....|.++.   +..+.+..+++++.+.++||+.+.+..-
T Consensus        94 g~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT  173 (325)
T 3eeg_A           94 KRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNIPDT  173 (325)
T ss_dssp             SSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEECCBS
T ss_pred             CCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEecCc
Confidence            444 45888888875     56777777777777776655456776664   4678899999999999999998777765


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCC---CcEEEE
Q psy9602         199 LFFTPASVEDLVDYLRDVGEAAPA---TPLFYY  228 (239)
Q Consensus       199 ~y~~~~s~e~iv~yf~~Vaeatpd---LPIiLY  228 (239)
                      ..+ . ++.++.+.++.+.+..|+   +||-++
T Consensus       174 ~G~-~-~P~~v~~lv~~l~~~~~~~~~~~i~~H  204 (325)
T 3eeg_A          174 TGY-M-LPWQYGERIKYLMDNVSNIDKAILSAH  204 (325)
T ss_dssp             SSC-C-CHHHHHHHHHHHHHHCSCGGGSEEEEC
T ss_pred             cCC-c-CHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence            543 2 789999999999999865   777654

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=92.67  E-value=0.59  Score=41.03  Aligned_cols=81  Identities=11%  Similarity=0.035  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCC-CCHHHHHHHHHHHHhCC-CCEEEECCCCC---------C-----------
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCFQEVVELAKHAESLN-VHAVLCLPELF---------F-----------  201 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~-~St~eAIelar~A~~aG-AdaVlV~PP~y---------~-----------  201 (239)
                      +.+...++++.+.+.+   ++||++-++. .+.++..++++.++++| +|++.+..-.+         .           
T Consensus       144 ~~~~~~~ii~~vr~~~---~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~g  220 (314)
T 2e6f_A          144 DFEAMRTYLQQVSLAY---GLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFG  220 (314)
T ss_dssp             SHHHHHHHHHHHHHHH---CSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEE
T ss_pred             CHHHHHHHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCC
Confidence            6777888999998887   4799987764 36778888899999999 99998765210         0           


Q ss_pred             --C-CCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         202 --T-PASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       202 --~-~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                        . +.....-.++.+.+.+.+|++||+.
T Consensus       221 G~sg~~~~p~~~~~i~~v~~~~~~ipvi~  249 (314)
T 2e6f_A          221 GLGGKYILPTALANVNAFYRRCPDKLVFG  249 (314)
T ss_dssp             EEESGGGHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             ccCcccccHHHHHHHHHHHHhcCCCCEEE
Confidence              0 0011234688888888876799874

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=92.55  E-value=1.2  Score=36.85  Aligned_cols=92  Identities=15%  Similarity=0.119  Sum_probs=56.7

Q ss_pred             hhcCCCCEEEeccccCC-cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602         124 RMAPIIDQMVNGTTGEG-VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT  202 (239)
Q Consensus       124 ~~~gg~glvV~GstGE~-~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~  202 (239)
                      ..+.|...+++++.-.. +..+.   .++++.+.+...  ..++++++.  +.++    ++.+++.|+|.+++.++.+..
T Consensus        84 ~~~~Gad~v~l~~~~~~~p~~~~---~~~i~~~~~~~~--~~~v~~~~~--t~~e----~~~~~~~G~d~i~~~~~g~t~  152 (223)
T 1y0e_A           84 LIESQCEVIALDATLQQRPKETL---DELVSYIRTHAP--NVEIMADIA--TVEE----AKNAARLGFDYIGTTLHGYTS  152 (223)
T ss_dssp             HHHHTCSEEEEECSCSCCSSSCH---HHHHHHHHHHCT--TSEEEEECS--SHHH----HHHHHHTTCSEEECTTTTSST
T ss_pred             HHhCCCCEEEEeeecccCcccCH---HHHHHHHHHhCC--CceEEecCC--CHHH----HHHHHHcCCCEEEeCCCcCcC
Confidence            34556666655543221 11233   467777777663  467776553  4444    556889999999988765532


Q ss_pred             CC--C--HHHHHHHHHHHHhhCCCCcEEE
Q psy9602         203 PA--S--VEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       203 ~~--s--~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..  .  ...-+++++.+.+.. ++||+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~ipvia  180 (223)
T 1y0e_A          153 YTQGQLLYQNDFQFLKDVLQSV-DAKVIA  180 (223)
T ss_dssp             TSTTCCTTHHHHHHHHHHHHHC-CSEEEE
T ss_pred             CCCCCCCCcccHHHHHHHHhhC-CCCEEE
Confidence            10  1  334467899999988 899875

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=92.41  E-value=0.7  Score=41.53  Aligned_cols=88  Identities=14%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             Eecccc--CCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC----CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCH
Q psy9602         133 VNGTTG--EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG----GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASV  206 (239)
Q Consensus       133 V~GstG--E~~sLT~eER~~li~~vve~~~G~rvpVIaGVg----~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~  206 (239)
                      ++|+.|  .-...+.+|..+-|+.++++..+...-|++=+-    ..+.+++|+.++.++++|||++++-++.   + +.
T Consensus       121 ~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~---~-~~  196 (295)
T 1s2w_A          121 TNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK---A-DP  196 (295)
T ss_dssp             ------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS---S-SS
T ss_pred             cccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCC---C-CH
Confidence            455656  245678888999999999886442455555332    2347999999999999999999997421   2 44


Q ss_pred             HHHHHHHHHHHhhCCCCcEEE
Q psy9602         207 EDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       207 e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +++..+-+.+..   .+|+++
T Consensus       197 ~~~~~i~~~~~~---~~P~i~  214 (295)
T 1s2w_A          197 SDIEAFMKAWNN---QGPVVI  214 (295)
T ss_dssp             HHHHHHHHHHTT---CSCEEE
T ss_pred             HHHHHHHHHcCC---CCCEEE
Confidence            666666555531   378753

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*

Probab=92.39  E-value=1.3  Score=41.86  Aligned_cols=106  Identities=11%  Similarity=0.039  Sum_probs=70.7

Q ss_pred             HHhhhcCCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCC
Q psy9602         121 ITLRMAPIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVH  191 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAd  191 (239)
                      ++..++.+.. +-++.+++|.+     ..|.+|-.+.+..+++.++.....|.++.   ...+.+..++.++.+.++||+
T Consensus       116 i~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~  195 (423)
T 3ivs_A          116 ARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVN  195 (423)
T ss_dssp             HHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCC
Confidence            3344555554 44777788864     45777777766666666655456666654   345678899999999999999


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      .+.+..-..+.  ++.++.+.++.|.+.. ++||-++-
T Consensus       196 ~i~l~DTvG~~--~P~~v~~lv~~l~~~~-~~~i~~H~  230 (423)
T 3ivs_A          196 RVGIADTVGCA--TPRQVYDLIRTLRGVV-SCDIECHF  230 (423)
T ss_dssp             EEEEEETTSCC--CHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred             ccccCCccCcC--CHHHHHHHHHHHHhhc-CCeEEEEE
Confidence            88777655432  7899999999999987 78877653

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=92.30  E-value=0.4  Score=41.93  Aligned_cols=87  Identities=8%  Similarity=-0.004  Sum_probs=62.3

Q ss_pred             HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602         121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPE  198 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP  198 (239)
                      ++...+.|.+++-.++++     +    .+.++.+++.+ + .+||++  |+...+.+++++.++.+.++||+++.+..-
T Consensus       165 ~~~a~~~GAD~vkt~~~~-----~----~e~~~~~~~~~-~-~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgra  233 (263)
T 1w8s_A          165 ARIALELGADAMKIKYTG-----D----PKTFSWAVKVA-G-KVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRN  233 (263)
T ss_dssp             HHHHHHHTCSEEEEECCS-----S----HHHHHHHHHHT-T-TSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred             HHHHHHcCCCEEEEcCCC-----C----HHHHHHHHHhC-C-CCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehh
Confidence            344456677877666542     2    24456666666 4 558776  555558999999999999999999999987


Q ss_pred             CCCCCCCHHHHHHHHHHHHhh
Q psy9602         199 LFFTPASVEDLVDYLRDVGEA  219 (239)
Q Consensus       199 ~y~~~~s~e~iv~yf~~Vaea  219 (239)
                      .+..+ ++....+-+..+...
T Consensus       234 I~~~~-dp~~~~~~l~~~v~~  253 (263)
T 1w8s_A          234 VWQRR-DALKFARALAELVYG  253 (263)
T ss_dssp             HHTST-THHHHHHHHHHHHC-
T ss_pred             hcCCc-CHHHHHHHHHHHHhc
Confidence            77777 888887777776643

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=92.20  E-value=1.5  Score=41.76  Aligned_cols=96  Identities=11%  Similarity=0.030  Sum_probs=66.5

Q ss_pred             HhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec-----CCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602         122 TLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI-----GGTCFQEVVELAKHAESLNVHAVLC  195 (239)
Q Consensus       122 ~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV-----g~~St~eAIelar~A~~aGAdaVlV  195 (239)
                      +...+.|...+ ++.++.+.     +.-...++.+.+.    ...|.+.+     ...+.+..+++++.+.++||+.+.+
T Consensus       107 ~~a~~~Gvd~i~if~~~sd~-----~ni~~~i~~ak~~----G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l  177 (464)
T 2nx9_A          107 ERAVKNGMDVFRVFDAMNDV-----RNMQQALQAVKKM----GAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIAL  177 (464)
T ss_dssp             HHHHHTTCCEEEECCTTCCT-----HHHHHHHHHHHHT----TCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHhCCcCEEEEEEecCHH-----HHHHHHHHHHHHC----CCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            34456666654 88888887     2223334443332    34453333     2337899999999999999999888


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         196 LPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       196 ~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      ..-....  ++.++.+.++.|.+.. ++||-++-
T Consensus       178 ~DT~G~~--~P~~v~~lv~~l~~~~-~~~i~~H~  208 (464)
T 2nx9_A          178 KDMAGIL--TPYAAEELVSTLKKQV-DVELHLHC  208 (464)
T ss_dssp             EETTSCC--CHHHHHHHHHHHHHHC-CSCEEEEE
T ss_pred             cCCCCCc--CHHHHHHHHHHHHHhc-CCeEEEEE
Confidence            7655432  6899999999999999 89988763

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=92.20  E-value=0.8  Score=40.75  Aligned_cols=94  Identities=12%  Similarity=0.040  Sum_probs=61.9

Q ss_pred             hhhcCCC-CEEEeccc--cCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEecCC----------CCHHHHHHHHHHHHh
Q psy9602         123 LRMAPII-DQMVNGTT--GEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQIGG----------TCFQEVVELAKHAES  187 (239)
Q Consensus       123 ~~~~gg~-glvV~Gst--GE~~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~----------~St~eAIelar~A~~  187 (239)
                      ..++.|+ ++-+=+..  +.-...+.+|..+-|+.+++...  |...-|++=+-+          .+.+++|+.++.+++
T Consensus       100 ~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~e  179 (275)
T 2ze3_A          100 HFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYAD  179 (275)
T ss_dssp             HHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHH
Confidence            3344444 45454443  34466799999999999999854  312333332222          157999999999999


Q ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       188 aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      +|||++++--+    + +.+++    +.++++. ++|+.
T Consensus       180 AGAd~i~~e~~----~-~~~~~----~~i~~~~-~~P~n  208 (275)
T 2ze3_A          180 AGADGIFVPLA----L-QSQDI----RALADAL-RVPLN  208 (275)
T ss_dssp             TTCSEEECTTC----C-CHHHH----HHHHHHC-SSCEE
T ss_pred             CCCCEEEECCC----C-CHHHH----HHHHHhc-CCCEE
Confidence            99999988643    3 55555    4566667 68874

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=92.12  E-value=1.5  Score=39.63  Aligned_cols=91  Identities=15%  Similarity=0.012  Sum_probs=65.9

Q ss_pred             CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q psy9602         127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFTP  203 (239)
Q Consensus       127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~  203 (239)
                      |+..+-+.-+..|.     ++-.++++.+.+.    .+.++..+   ...+.+..++.++.+.+.|++.|.+.--.... 
T Consensus       106 Gvd~v~I~~~~s~~-----~~~~~~i~~ak~~----G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~-  175 (345)
T 1nvm_A          106 GARVVRVATHCTEA-----DVSKQHIEYARNL----GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAM-  175 (345)
T ss_dssp             TCCEEEEEEETTCG-----GGGHHHHHHHHHH----TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCC-
T ss_pred             CcCEEEEEEeccHH-----HHHHHHHHHHHHC----CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCcc-
Confidence            34445465555553     4556666666554    34555554   45677899999999999999998887655433 


Q ss_pred             CCHHHHHHHHHHHHhhCC-CCcEEEE
Q psy9602         204 ASVEDLVDYLRDVGEAAP-ATPLFYY  228 (239)
Q Consensus       204 ~s~e~iv~yf~~Vaeatp-dLPIiLY  228 (239)
                       +++++.+.++.|.+.+| ++||.++
T Consensus       176 -~P~~v~~lv~~l~~~~~~~~pi~~H  200 (345)
T 1nvm_A          176 -SMNDIRDRMRAFKAVLKPETQVGMH  200 (345)
T ss_dssp             -CHHHHHHHHHHHHHHSCTTSEEEEE
T ss_pred             -CHHHHHHHHHHHHHhcCCCceEEEE
Confidence             68999999999999996 7898875

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=92.05  E-value=1.9  Score=38.62  Aligned_cols=80  Identities=11%  Similarity=0.091  Sum_probs=54.2

Q ss_pred             CHHHH----HHHHHHHHHHhcCCCceEEEecCC-------CCHHHHHHHHHHHHhCCCCEEEECCCCCCC---CCCHHHH
Q psy9602         144 TTAER----KLNLEAWMTEAKTHGFTVMVQIGG-------TCFQEVVELAKHAESLNVHAVLCLPELFFT---PASVEDL  209 (239)
Q Consensus       144 T~eER----~~li~~vve~~~G~rvpVIaGVg~-------~St~eAIelar~A~~aGAdaVlV~PP~y~~---~~s~e~i  209 (239)
                      |.+.|    .++++.+.+.+   +.||.+=++.       .+.++++++++.+++.|+|++-+....+..   +..+..-
T Consensus       189 slenr~r~~~eiv~avr~~v---~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~  265 (338)
T 1z41_A          189 SPENRYRFLREIIDEVKQVW---DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQ  265 (338)
T ss_dssp             SHHHHHHHHHHHHHHHHHHC---CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTT
T ss_pred             chhhhHHHHHHHHHHHHHHc---CCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccch
Confidence            45666    45555555555   3687775543       568899999999999999999998653321   1011123


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      .++.+.|.+.+ ++||+.
T Consensus       266 ~~~~~~ir~~~-~iPVi~  282 (338)
T 1z41_A          266 VSFAEKIREQA-DMATGA  282 (338)
T ss_dssp             HHHHHHHHHHH-CCEEEE
T ss_pred             HHHHHHHHHHC-CCCEEE
Confidence            56677788888 899885

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=91.84  E-value=1.1  Score=37.17  Aligned_cols=65  Identities=8%  Similarity=0.132  Sum_probs=47.2

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +..+++.....+.+...+..+...+.++|++++.|.....+   +.....++.+.+.  ++|++++|.+.
T Consensus        45 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~~~~--~iPvV~~~~~~  109 (298)
T 3tb6_A           45 GYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ---TPNIGYYLNLEKN--GIPFAMINASY  109 (298)
T ss_dssp             TCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC---CTTHHHHHHHHHT--TCCEEEESSCC
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc---CCcHHHHHHHHhc--CCCEEEEecCc
Confidence            46777777778888889999999999999999997543211   1123455666554  79999998753

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=91.64  E-value=0.84  Score=42.13  Aligned_cols=113  Identities=13%  Similarity=0.106  Sum_probs=74.3

Q ss_pred             ceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHH
Q psy9602         101 KWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVE  180 (239)
Q Consensus       101 ~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIe  180 (239)
                      ++-++.-|+..-....|+..  ....||.+++-       -.+|.+|..+.++.+.+.  + +++|-++++..  .+..+
T Consensus        46 ~~Pii~apM~~vs~~~lA~a--vA~aGGlg~i~-------~~~s~e~~~~~i~~vk~~--~-~l~vga~vg~~--~~~~~  111 (366)
T 4fo4_A           46 NIPMVSASMDTVTEARLAIA--LAQEGGIGFIH-------KNMSIEQQAAQVHQVKIS--G-GLRVGAAVGAA--PGNEE  111 (366)
T ss_dssp             SSSEEECCCTTTCSHHHHHH--HHHTTCEEEEC-------SSSCHHHHHHHHHHHHTT--T-SCCCEEECCSC--TTCHH
T ss_pred             CCCEEeCCCCCCChHHHHHH--HHHcCCceEee-------cCCCHHHHHHHHHHHHhc--C-ceeEEEEeccC--hhHHH
Confidence            33455556555444455443  23455555442       148999999999888765  3 45555555432  34667


Q ss_pred             HHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         181 LAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       181 lar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      .++.+.++|+|.+.+-..+.    +.+.+.+..+.+.+..|++||+.-|..
T Consensus       112 ~~~~lieaGvd~I~idta~G----~~~~~~~~I~~ik~~~p~v~Vi~G~v~  158 (366)
T 4fo4_A          112 RVKALVEAGVDVLLIDSSHG----HSEGVLQRIRETRAAYPHLEIIGGNVA  158 (366)
T ss_dssp             HHHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred             HHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHHhcCCCceEeeeeC
Confidence            78889999999998854432    235778888888888888999876543

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=91.56  E-value=0.69  Score=39.69  Aligned_cols=57  Identities=11%  Similarity=0.151  Sum_probs=45.2

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC-----------------CCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         170 IGGTCFQEVVELAKHAESLNVHAVLCLPELFF-----------------TPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       170 Vg~~St~eAIelar~A~~aGAdaVlV~PP~y~-----------------~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .+..+.++.++.++.+++.|+|.+.+--|+.-                 ...+.+..++..+++.+.+ ++|+++
T Consensus        26 ~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~-~~Pv~~   99 (262)
T 1rd5_A           26 AGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVL   99 (262)
T ss_dssp             TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEE
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCEEE
Confidence            45666799999999999999999999877641                 1014566778888888887 899987

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=91.13  E-value=1  Score=40.56  Aligned_cols=85  Identities=11%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      ++|+.|--...+.+|..+-|+.++++..+...-|++=+.   ..+.+++|+.++.++++|||++++-.+    + +.+++
T Consensus       121 ~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~----~-~~~~~  195 (295)
T 1xg4_A          121 RSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI----T-ELAMY  195 (295)
T ss_dssp             CCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC----C-SHHHH
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCC----C-CHHHH
Confidence            455666556789999999999999986442455555332   234589999999999999999998753    3 45555


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      ..    ++++. ++|++.
T Consensus       196 ~~----i~~~~-~iP~~~  208 (295)
T 1xg4_A          196 RQ----FADAV-QVPILA  208 (295)
T ss_dssp             HH----HHHHH-CSCBEE
T ss_pred             HH----HHHHc-CCCEEE
Confidence            44    45555 578754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=91.09  E-value=2.4  Score=41.05  Aligned_cols=82  Identities=20%  Similarity=0.209  Sum_probs=56.0

Q ss_pred             CHHHH----HHHHHHHHHHhcCCCceEEEec-------CCCCHHHHHHHHHHHHhCCCCEEEEC-----CCCC--CCCCC
Q psy9602         144 TTAER----KLNLEAWMTEAKTHGFTVMVQI-------GGTCFQEVVELAKHAESLNVHAVLCL-----PELF--FTPAS  205 (239)
Q Consensus       144 T~eER----~~li~~vve~~~G~rvpVIaGV-------g~~St~eAIelar~A~~aGAdaVlV~-----PP~y--~~~~s  205 (239)
                      |.+.|    .++++.+.+.++. +.||.+=+       ++.+.++++++++.+++.|+|.+-+.     ++..  .....
T Consensus       186 s~~~r~r~~~eiv~avr~~vG~-~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~  264 (671)
T 1ps9_A          186 DYRNRMRFAVEVVRAVRERVGN-DFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVP  264 (671)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCS-SSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSC
T ss_pred             cHHHHHHHHHHHHHHHHHHcCC-CceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCC
Confidence            45666    6667777777766 78887622       24678999999999999999999874     2110  00001


Q ss_pred             HHHHHHHHHHHHhhCCCCcEEE
Q psy9602         206 VEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       206 ~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .....++.+.|.+.+ ++||+.
T Consensus       265 ~~~~~~~~~~i~~~~-~iPvi~  285 (671)
T 1ps9_A          265 RGAFSWVTRKLKGHV-SLPLVT  285 (671)
T ss_dssp             TTTTHHHHHHHTTSC-SSCEEE
T ss_pred             cchHHHHHHHHHHhc-CceEEE
Confidence            122356778888888 899885

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=91.03  E-value=1.4  Score=38.79  Aligned_cols=99  Identities=13%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             hhhcCCC-CEEEeccc--cCCcCCCHHHHHHHHHHHHHHhcCCCce--EEEecCC---------CCHHHHHHHHHHHHhC
Q psy9602         123 LRMAPII-DQMVNGTT--GEGVSMTTAERKLNLEAWMTEAKTHGFT--VMVQIGG---------TCFQEVVELAKHAESL  188 (239)
Q Consensus       123 ~~~~gg~-glvV~Gst--GE~~sLT~eER~~li~~vve~~~G~rvp--VIaGVg~---------~St~eAIelar~A~~a  188 (239)
                      ..++.|+ ++-+=|..  ..-...+.+|..+-|+.+++......+|  |++-+..         .+.+++|+.++..+++
T Consensus       101 ~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eA  180 (255)
T 2qiw_A          101 QILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQA  180 (255)
T ss_dssp             HHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHc
Confidence            3344444 44444432  1234568899999999999985411145  6664442         2489999999999999


Q ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         189 NVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       189 GAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      |||++++--+    + +.+++    +.|+++. ++|+.+--.|
T Consensus       181 GAd~i~~e~~----~-~~~~~----~~i~~~~-~~P~n~~~~~  213 (255)
T 2qiw_A          181 GARSVYPVGL----S-TAEQV----ERLVDAV-SVPVNITAHP  213 (255)
T ss_dssp             TCSEEEECCC----C-SHHHH----HHHHTTC-SSCBEEECBT
T ss_pred             CCcEEEEcCC----C-CHHHH----HHHHHhC-CCCEEEEecC
Confidence            9999999532    3 44444    5667777 6887654334

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=90.91  E-value=2.1  Score=35.46  Aligned_cols=76  Identities=18%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++-+.+.+...+..+++.....+.....+..+.+.+.++|++++.|.      +.+.....++.+.+.  ++|++++
T Consensus        21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~------~~~~~~~~~~~~~~~--~iPvV~~   92 (291)
T 3l49_A           21 LKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG------NLDVLNPWLQKINDA--GIPLFTV   92 (291)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS------CHHHHHHHHHHHHHT--TCCEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC------ChhhhHHHHHHHHHC--CCcEEEe
Confidence            34445444444333567777777778888889999999999999999863      234455667777665  7999999


Q ss_pred             eCCC
Q psy9602         229 HIPM  232 (239)
Q Consensus       229 N~P~  232 (239)
                      |.+.
T Consensus        93 ~~~~   96 (291)
T 3l49_A           93 DTAT   96 (291)
T ss_dssp             SCCC
T ss_pred             cCCC
Confidence            9864

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=90.74  E-value=0.68  Score=43.13  Aligned_cols=63  Identities=11%  Similarity=0.125  Sum_probs=47.3

Q ss_pred             CceEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEECC------CCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         163 GFTVMVQ-IGGTCFQEVVELAKHAESLNVHAVLCLP------ELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       163 rvpVIaG-Vg~~St~eAIelar~A~~aGAdaVlV~P------P~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +.++|+| ++.+|.+.++++++.++++|++++-...      |+.|+..+.+++ ..+.++++.. ++|++-
T Consensus       142 ~~~~Iigpcsves~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl-~~L~~~~~~~-Gl~~~t  211 (385)
T 3nvt_A          142 EPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGL-KILKRVSDEY-GLGVIS  211 (385)
T ss_dssp             SCEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHH-HHHHHHHHHH-TCEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHH-HHHHHHHHHc-CCEEEE
Confidence            4567777 4667999999999999999999887664      443443255544 6777788888 899874

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=90.64  E-value=0.94  Score=39.67  Aligned_cols=81  Identities=7%  Similarity=-0.087  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCC----C-----------------
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCLPELF----F-----------------  201 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~PP~y----~-----------------  201 (239)
                      +.+...++++.+.+.+   ++||++=+.. .+.++..++++.++++|+|++.+..-.+    .                 
T Consensus       142 ~~e~~~~iv~~vr~~~---~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG  218 (311)
T 1jub_A          142 DFEATEKLLKEVFTFF---TKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGG  218 (311)
T ss_dssp             CHHHHHHHHHHHTTTC---CSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEE
T ss_pred             CHHHHHHHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCc
Confidence            6777778888877765   4799986554 3667888899999999999998865210    0                 


Q ss_pred             --CCCCHHHHHHHHHHHHhhCC-CCcEEE
Q psy9602         202 --TPASVEDLVDYLRDVGEAAP-ATPLFY  227 (239)
Q Consensus       202 --~~~s~e~iv~yf~~Vaeatp-dLPIiL  227 (239)
                        .+.....-.++.+.+.++++ ++||+.
T Consensus       219 ~sg~~~~~~~~~~i~~v~~~~~~~ipvi~  247 (311)
T 1jub_A          219 IGGAYIKPTALANVRAFYTRLKPEIQIIG  247 (311)
T ss_dssp             EESGGGHHHHHHHHHHHHTTSCTTSEEEE
T ss_pred             cccccccHHHHHHHHHHHHhcCCCCCEEE
Confidence              00012234678888888874 688874

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=90.63  E-value=1.4  Score=40.50  Aligned_cols=81  Identities=11%  Similarity=0.011  Sum_probs=53.1

Q ss_pred             CHHHH----HHHHHHHHHHhcCCCceEEEecCC----------CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         144 TTAER----KLNLEAWMTEAKTHGFTVMVQIGG----------TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       144 T~eER----~~li~~vve~~~G~rvpVIaGVg~----------~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      |.+.|    .++++.+.+.++. + ||.+=++.          .+.++++++++.+++.|+|.+-+..+.+....+...-
T Consensus       212 slenR~r~~~eiv~aVr~avg~-~-~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~  289 (376)
T 1icp_A          212 SLENRCRFALEIVEAVANEIGS-D-RVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIEC  289 (376)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCG-G-GEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------C
T ss_pred             cHHHhHHHHHHHHHHHHHHhcC-C-ceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCcccc
Confidence            35666    4556666666654 4 88875542          3466899999999999999999987654321010012


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      ..+.+.|.+++ ++||+.
T Consensus       290 ~~~~~~vr~~~-~iPvi~  306 (376)
T 1icp_A          290 TESLVPMRKAY-KGTFIV  306 (376)
T ss_dssp             CCCSHHHHHHC-CSCEEE
T ss_pred             HHHHHHHHHHc-CCCEEE
Confidence            24567788888 789875

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=90.41  E-value=2.3  Score=41.37  Aligned_cols=97  Identities=9%  Similarity=0.022  Sum_probs=66.5

Q ss_pred             HhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE--EEec---CCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602         122 TLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV--MVQI---GGTCFQEVVELAKHAESLNVHAVLC  195 (239)
Q Consensus       122 ~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpV--IaGV---g~~St~eAIelar~A~~aGAdaVlV  195 (239)
                      +...+.+...+ ++.++.+.     +.-...++.+.+.    ...|  .++.   ...+.+..+++++.+.++||+.+.+
T Consensus       124 e~a~~aGvd~vrIf~s~sd~-----~ni~~~i~~ak~~----G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~L  194 (539)
T 1rqb_A          124 DKSAENGMDVFRVFDAMNDP-----RNMAHAMAAVKKA----GKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIAL  194 (539)
T ss_dssp             HHHHHTTCCEEEECCTTCCT-----HHHHHHHHHHHHT----TCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHhCCCCEEEEEEehhHH-----HHHHHHHHHHHHC----CCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence            34456666654 88888887     2333444444332    2344  2221   2347899999999999999998887


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCC-CCcEEEEe
Q psy9602         196 LPELFFTPASVEDLVDYLRDVGEAAP-ATPLFYYH  229 (239)
Q Consensus       196 ~PP~y~~~~s~e~iv~yf~~Vaeatp-dLPIiLYN  229 (239)
                      ..-....  ++.++.+.++.|.+..| ++||-++-
T Consensus       195 ~DT~G~~--~P~~v~~lv~~l~~~~p~~i~I~~H~  227 (539)
T 1rqb_A          195 KDMAALL--KPQPAYDIIKAIKDTYGQKTQINLHC  227 (539)
T ss_dssp             EETTCCC--CHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCCCCCc--CHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            7644432  68999999999999887 78887763

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=90.40  E-value=2.6  Score=38.04  Aligned_cols=80  Identities=15%  Similarity=0.047  Sum_probs=54.3

Q ss_pred             CHHHHH----HHHHHHHHHhcCCCceEEEecCC-------CCHHHHHHHHHHHHhCCCCEEEECCCCCCCC---CCHHHH
Q psy9602         144 TTAERK----LNLEAWMTEAKTHGFTVMVQIGG-------TCFQEVVELAKHAESLNVHAVLCLPELFFTP---ASVEDL  209 (239)
Q Consensus       144 T~eER~----~li~~vve~~~G~rvpVIaGVg~-------~St~eAIelar~A~~aGAdaVlV~PP~y~~~---~s~e~i  209 (239)
                      |.+.|.    ++++.+.+.+   +.||.+=++.       .+.++.+++++..+++|+|.+-|....+...   ..+.--
T Consensus       189 slenR~r~~~eiv~avr~~v---~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~  265 (340)
T 3gr7_A          189 SPENRYRFLGEVIDAVREVW---DGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQ  265 (340)
T ss_dssp             SHHHHHHHHHHHHHHHHHHC---CSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHhc---CCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCcccc
Confidence            567775    4555555555   3687775543       4688999999999999999999974322210   011223


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      .++.+.|.+++ ++||+.
T Consensus       266 ~~~~~~ik~~~-~iPVi~  282 (340)
T 3gr7_A          266 VPFAELIRREA-DIPTGA  282 (340)
T ss_dssp             HHHHHHHHHHT-TCCEEE
T ss_pred             HHHHHHHHHHc-CCcEEe
Confidence            56778888888 899886

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=90.32  E-value=0.37  Score=43.97  Aligned_cols=82  Identities=13%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHH----HhcCCCceEEEecCC--------CCHHHHHHHHHHHHhCCCCEEEECCCCCCC----CCCHH
Q psy9602         144 TTAERKLNLEAWMT----EAKTHGFTVMVQIGG--------TCFQEVVELAKHAESLNVHAVLCLPELFFT----PASVE  207 (239)
Q Consensus       144 T~eER~~li~~vve----~~~G~rvpVIaGVg~--------~St~eAIelar~A~~aGAdaVlV~PP~y~~----~~s~e  207 (239)
                      |.+.|.+++..+++    .++. +.||.+=++.        .+.++++++++..+++|+|.+-+....+..    +..+.
T Consensus       203 slenR~r~~~eiv~aVr~avg~-d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~  281 (363)
T 3l5l_A          203 SFDNRSRFLLETLAAVREVWPE-NLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPA  281 (363)
T ss_dssp             SHHHHHHHHHHHHHHHHTTSCT-TSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTT
T ss_pred             CHHHHHHHHHHHHHHHHHHcCC-CceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcc
Confidence            46777555544444    4443 5678774442        567899999999999999999987543211    10112


Q ss_pred             HHHHHHHHHHhhCCCCcEEE
Q psy9602         208 DLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       208 ~iv~yf~~VaeatpdLPIiL  227 (239)
                      .-.++.+.|.+.+ ++||+.
T Consensus       282 ~~~~~~~~ir~~~-~iPVi~  300 (363)
T 3l5l_A          282 FMGPIAERVRREA-KLPVTS  300 (363)
T ss_dssp             TTHHHHHHHHHHH-TCCEEE
T ss_pred             hhHHHHHHHHHHc-CCcEEE
Confidence            2355677777777 799885

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=90.28  E-value=1.1  Score=39.87  Aligned_cols=86  Identities=13%  Similarity=0.191  Sum_probs=63.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC--------CHHHHHHHHHHHHhCCCCEEEECCC------CCCCCCCH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT--------CFQEVVELAKHAESLNVHAVLCLPE------LFFTPASV  206 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~--------St~eAIelar~A~~aGAdaVlV~PP------~y~~~~s~  206 (239)
                      ..|+.++|.++++.+.+.    ...|+.-+|..        ++.+-|++++...++||+.||+-.=      -.|.. ..
T Consensus       109 i~l~~~~~~~~I~~~~~~----G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEarEsG~~iGi~~~-~g  183 (251)
T 1qwg_A          109 SDISLEERNNAIKRAKDN----GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDK-EG  183 (251)
T ss_dssp             SCCCHHHHHHHHHHHHHT----TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCT-TS
T ss_pred             ccCCHHHHHHHHHHHHHC----CCEEeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeeecccCCcccCCC-CC
Confidence            459999999999999886    46777766664        4589999999999999999999983      22222 11


Q ss_pred             HHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         207 EDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       207 e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +--.+-...|.+.. ++.-++|..|.
T Consensus       184 ~~r~d~v~~i~~~l-~~eklifEAp~  208 (251)
T 1qwg_A          184 KVKENELDVLAKNV-DINKVIFEAPQ  208 (251)
T ss_dssp             CBCHHHHHHHHTTS-CGGGEEEECCS
T ss_pred             CCcHHHHHHHHHhC-ChhhEEEECCC
Confidence            11223346677777 67778888885

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=90.17  E-value=0.5  Score=40.51  Aligned_cols=84  Identities=12%  Similarity=0.023  Sum_probs=57.2

Q ss_pred             hhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602         123 LRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPELF  200 (239)
Q Consensus       123 ~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~y  200 (239)
                      ...+.|.+++..+.     .+.    .+.++.+++.+   ++||++  |++..+.+++++.++.+.++||+++++....+
T Consensus       174 ~a~~~Gad~i~~~~-----~~~----~~~l~~i~~~~---~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~  241 (273)
T 2qjg_A          174 LGAELGADIVKTSY-----TGD----IDSFRDVVKGC---PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIF  241 (273)
T ss_dssp             HHHHTTCSEEEECC-----CSS----HHHHHHHHHHC---SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHH
T ss_pred             HHHHcCCCEEEECC-----CCC----HHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhh
Confidence            33456666654442     233    34555555554   478887  55555689999999999999999999987766


Q ss_pred             CCCCCHHHHHHHHHHHHhh
Q psy9602         201 FTPASVEDLVDYLRDVGEA  219 (239)
Q Consensus       201 ~~~~s~e~iv~yf~~Vaea  219 (239)
                      ..+ ++.+..+.|..+...
T Consensus       242 ~~~-~~~~~~~~l~~~~~~  259 (273)
T 2qjg_A          242 QHD-DVVGITRAVCKIVHE  259 (273)
T ss_dssp             TSS-SHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHhc
Confidence            666 667666666665543

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=90.03  E-value=3.3  Score=36.02  Aligned_cols=93  Identities=13%  Similarity=-0.019  Sum_probs=61.9

Q ss_pred             HHhhhcCCCCEE--EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC--------CHHHHHHHHHHHHhCCC
Q psy9602         121 ITLRMAPIIDQM--VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT--------CFQEVVELAKHAESLNV  190 (239)
Q Consensus       121 v~~~~~gg~glv--V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~--------St~eAIelar~A~~aGA  190 (239)
                      ++..++.|...+  +. ..|   ..+.++..+.++.+++.+....+|+|+-....        +.++..+.++.|.++||
T Consensus        98 ve~Ai~~Ga~~v~~~~-nig---~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GA  173 (263)
T 1w8s_A           98 VEEAVSLGASAVGYTI-YPG---SGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGA  173 (263)
T ss_dssp             HHHHHHTTCSEEEEEE-CTT---STTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCCEEEEEE-ecC---CcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCC
Confidence            555677776543  33 222   34668888888888887754368988865331        55555556799999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC-cEEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT-PLFY  227 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL-PIiL  227 (239)
                      |.+=+..|    . +.    +.|+.+.+.+ +. ||+.
T Consensus       174 D~vkt~~~----~-~~----e~~~~~~~~~-~~~pV~a  201 (263)
T 1w8s_A          174 DAMKIKYT----G-DP----KTFSWAVKVA-GKVPVLM  201 (263)
T ss_dssp             SEEEEECC----S-SH----HHHHHHHHHT-TTSCEEE
T ss_pred             CEEEEcCC----C-CH----HHHHHHHHhC-CCCeEEE
Confidence            99888843    2 32    4467777777 55 8765

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=90.00  E-value=0.64  Score=42.55  Aligned_cols=79  Identities=14%  Similarity=0.061  Sum_probs=53.3

Q ss_pred             CHHHHH----HHHHHHHHHhcCCCceEEEecCC----------CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         144 TTAERK----LNLEAWMTEAKTHGFTVMVQIGG----------TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       144 T~eER~----~li~~vve~~~G~rvpVIaGVg~----------~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      |.+.|.    ++++.+.+.++. + ||.+=++.          .+.++++++++.+++.|+|++-+..+.+.....  .-
T Consensus       206 slenr~r~~~eiv~avr~~vg~-~-pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~~  281 (365)
T 2gou_A          206 SLENRLRFLDEVVAALVDAIGA-E-RVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPD--TP  281 (365)
T ss_dssp             SHHHHTHHHHHHHHHHHHHHCG-G-GEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCC--CC
T ss_pred             chhhhHHHHHHHHHHHHHHcCC-C-cEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCC--cc
Confidence            355564    455666666654 4 88773333          366889999999999999999998864321101  11


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      .++.+.|.+.+ ++|||.
T Consensus       282 ~~~~~~i~~~~-~iPvi~  298 (365)
T 2gou_A          282 VSFKRALREAY-QGVLIY  298 (365)
T ss_dssp             HHHHHHHHHHC-CSEEEE
T ss_pred             HHHHHHHHHHC-CCcEEE
Confidence            25677888888 799875

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=89.97  E-value=2.6  Score=34.41  Aligned_cols=77  Identities=10%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      =..++++-+.+.+...+..+++.....+.+...+..+...+.++|++++.|......       ..++.+.+ . ++|++
T Consensus        16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-------~~~~~~~~-~-~iPvV   86 (272)
T 3o74_A           16 SYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPED-------DSYRELQD-K-GLPVI   86 (272)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC-------CHHHHHHH-T-TCCEE
T ss_pred             hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH-------HHHHHHHH-c-CCCEE
Confidence            344455554444433356777766777888888999999999999999987542111       23344544 4 79999


Q ss_pred             EEeCCC
Q psy9602         227 YYHIPM  232 (239)
Q Consensus       227 LYN~P~  232 (239)
                      ++|.+.
T Consensus        87 ~~~~~~   92 (272)
T 3o74_A           87 AIDRRL   92 (272)
T ss_dssp             EESSCC
T ss_pred             EEccCC
Confidence            999764

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=89.85  E-value=3.3  Score=34.25  Aligned_cols=80  Identities=15%  Similarity=0.085  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL  225 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI  225 (239)
                      .=..++++-+.+.+...+..+++.....+.....+..+...+.++|++++.|+..      +.+...++.+.+.  ++|+
T Consensus        21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~------~~~~~~~~~~~~~--~iPv   92 (293)
T 3l6u_A           21 EFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDD------VYIGSAIEEAKKA--GIPV   92 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT------TTTHHHHHHHHHT--TCCE
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh------HHHHHHHHHHHHc--CCCE
Confidence            3344555555444443356777777778888889999999999999999987532      2233455666554  7999


Q ss_pred             EEEeCCCC
Q psy9602         226 FYYHIPMF  233 (239)
Q Consensus       226 iLYN~P~~  233 (239)
                      +++|.+..
T Consensus        93 V~~~~~~~  100 (293)
T 3l6u_A           93 FAIDRMIR  100 (293)
T ss_dssp             EEESSCCC
T ss_pred             EEecCCCC
Confidence            99997643

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=89.79  E-value=2.5  Score=36.53  Aligned_cols=89  Identities=12%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             cCCCHHHHHH-HHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHh-CCCCEEEEC--CCCC------CCCCCHHHHH
Q psy9602         141 VSMTTAERKL-NLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES-LNVHAVLCL--PELF------FTPASVEDLV  210 (239)
Q Consensus       141 ~sLT~eER~~-li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~-aGAdaVlV~--PP~y------~~~~s~e~iv  210 (239)
                      ...+.++..+ +++.+.+.. . ..|++++++..+.++..+.++.+++ .|+|++-+-  .|..      +.. +.+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~-~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~-~~~~~~  153 (311)
T 1ep3_A           77 QNPGLEVIMTEKLPWLNENF-P-ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGT-DPEVAA  153 (311)
T ss_dssp             CBCCHHHHHHTHHHHHHHHC-T-TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGG-CHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhcC-C-CCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcC-CHHHHH
Confidence            3455666533 344444322 2 4799999999999999999999998 999998663  2332      222 567788


Q ss_pred             HHHHHHHhhCCCCcEEEEeCCCC
Q psy9602         211 DYLRDVGEAAPATPLFYYHIPMF  233 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiLYN~P~~  233 (239)
                      +..+++.+.+ +.||++--.|..
T Consensus       154 eii~~v~~~~-~~pv~vk~~~~~  175 (311)
T 1ep3_A          154 ALVKACKAVS-KVPLYVKLSPNV  175 (311)
T ss_dssp             HHHHHHHHHC-SSCEEEEECSCS
T ss_pred             HHHHHHHHhc-CCCEEEEECCCh
Confidence            8999999988 899998655543

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=89.70  E-value=3.3  Score=37.06  Aligned_cols=111  Identities=15%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             hHHhhhcCCCCEEEeccc-----cCC----cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC----------------
Q psy9602         120 GITLRMAPIIDQMVNGTT-----GEG----VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC----------------  174 (239)
Q Consensus       120 ~v~~~~~gg~glvV~Gst-----GE~----~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S----------------  174 (239)
                      .+..+-.+|.|+++.+.+     |-.    ..+..+|..+-++.+++.+.....++++++.+.+                
T Consensus        44 ~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~  123 (338)
T 1z41_A           44 HYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIA  123 (338)
T ss_dssp             HHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCC
T ss_pred             HHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCC
Confidence            344555688898766543     211    2334555544444444433322458888776421                


Q ss_pred             -------------------HHHHHHHHHHHHhCCCCEEEECC-----------CCCCCCC-----C----HHHHHHHHHH
Q psy9602         175 -------------------FQEVVELAKHAESLNVHAVLCLP-----------ELFFTPA-----S----VEDLVDYLRD  215 (239)
Q Consensus       175 -------------------t~eAIelar~A~~aGAdaVlV~P-----------P~y~~~~-----s----~e~iv~yf~~  215 (239)
                                         .++-.+-|+.|+++|+|+|-+-.           |...+-.     +    ..-+.+-+++
T Consensus       124 ~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~a  203 (338)
T 1z41_A          124 FDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDE  203 (338)
T ss_dssp             SSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHH
Confidence                               24566788899999999998865           3322110     1    2346778888


Q ss_pred             HHhhCCCCcEEEEeCC
Q psy9602         216 VGEAAPATPLFYYHIP  231 (239)
Q Consensus       216 VaeatpdLPIiLYN~P  231 (239)
                      |.+++ +.||.+==.|
T Consensus       204 vr~~v-~~pv~vris~  218 (338)
T 1z41_A          204 VKQVW-DGPLFVRVSA  218 (338)
T ss_dssp             HHHHC-CSCEEEEEEC
T ss_pred             HHHHc-CCcEEEEecC
Confidence            88888 8999886544

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=89.61  E-value=1.5  Score=39.77  Aligned_cols=80  Identities=11%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEE----ecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCC---CCCCCH-----HHHH
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMV----QIGGT-CFQEVVELAKHAESLNVHAVLCLPELF---FTPASV-----EDLV  210 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIa----GVg~~-St~eAIelar~A~~aGAdaVlV~PP~y---~~~~s~-----e~iv  210 (239)
                      ..+--.++++.+.+.+   .+||++    |.... +.++++++++.++++|+|++.|..-..   +.+ ..     ..-.
T Consensus       110 ~~~~~~eiv~av~~~v---~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g-~~~~~~~~~~~  185 (350)
T 3b0p_A          110 DLARVREILKAMGEAV---RVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALST-KANREIPPLRH  185 (350)
T ss_dssp             CHHHHHHHHHHHHHHC---SSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC-----------CCCCCH
T ss_pred             CHHHHHHHHHHHHHHh---CCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCc-ccccCCCcccH
Confidence            4455556777777665   378888    33322 346899999999999999999986431   111 00     0135


Q ss_pred             HHHHHHHhhCCCCcEEE
Q psy9602         211 DYLRDVGEAAPATPLFY  227 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiL  227 (239)
                      ++...|.+.+|++||+.
T Consensus       186 ~~i~~ik~~~~~iPVia  202 (350)
T 3b0p_A          186 DWVHRLKGDFPQLTFVT  202 (350)
T ss_dssp             HHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHHhCCCCeEEE
Confidence            67778888876799874

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=89.44  E-value=2.5  Score=39.88  Aligned_cols=90  Identities=10%  Similarity=0.018  Sum_probs=59.6

Q ss_pred             hhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEECC-CC
Q psy9602         123 LRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ-IGGTCFQEVVELAKHAESLNVHAVLCLP-EL  199 (239)
Q Consensus       123 ~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG-Vg~~St~eAIelar~A~~aGAdaVlV~P-P~  199 (239)
                      ..++.+..++ +..+.|.     .+.-.++++.+.+.+ + ++||++| +      ...+.++.+.++|||++.+.. |-
T Consensus       262 ~~~~aG~d~v~i~~~~G~-----~~~~~~~i~~i~~~~-~-~~pvi~~~v------~t~~~a~~l~~aGad~I~vg~~~G  328 (514)
T 1jcn_A          262 LLTQAGVDVIVLDSSQGN-----SVYQIAMVHYIKQKY-P-HLQVIGGNV------VTAAQAKNLIDAGVDGLRVGMGCG  328 (514)
T ss_dssp             HHHHTTCSEEEECCSCCC-----SHHHHHHHHHHHHHC-T-TCEEEEEEE------CSHHHHHHHHHHTCSEEEECSSCS
T ss_pred             HHHHcCCCEEEeeccCCc-----chhHHHHHHHHHHhC-C-CCceEeccc------chHHHHHHHHHcCCCEEEECCCCC
Confidence            3455666655 4444442     134567888888877 3 5899984 5      224568889999999999943 21


Q ss_pred             C---------CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         200 F---------FTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       200 y---------~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .         +.. .+...+.....+++.. ++|||.
T Consensus       329 ~~~~t~~~~~~g~-~~~~~~~~~~~~~~~~-~ipVia  363 (514)
T 1jcn_A          329 SICITQEVMACGR-PQGTAVYKVAEYARRF-GVPIIA  363 (514)
T ss_dssp             CCBTTBCCCSCCC-CHHHHHHHHHHHHGGG-TCCEEE
T ss_pred             cccccccccCCCc-cchhHHHHHHHHHhhC-CCCEEE
Confidence            1         111 3566778888898888 899874

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=89.24  E-value=3.4  Score=36.05  Aligned_cols=64  Identities=16%  Similarity=0.104  Sum_probs=44.3

Q ss_pred             CceEEEecC----CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHH---hhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIG----GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVG---EAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg----~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va---eatpdLPIiLYN~P  231 (239)
                      ++.||+.--    ..+.++.+++.+.+++.|||-+=+....   . +.++....++...   ... +.|+|.|+.=
T Consensus       139 ~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~gaDivKia~~a---~-s~~D~l~ll~~~~~~~~~~-~~P~I~~~MG  209 (257)
T 2yr1_A          139 SVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMP---K-SPEDVLVLLQATEEARREL-AIPLITMAMG  209 (257)
T ss_dssp             TCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECC---S-SHHHHHHHHHHHHHHHHHC-SSCEEEEECT
T ss_pred             CCEEEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEEecc---C-CHHHHHHHHHHHHHHhccC-CCCEEEEECC
Confidence            577887542    4567899999999999999988666432   2 5555555554433   333 7899999874

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=89.19  E-value=5.3  Score=34.57  Aligned_cols=102  Identities=14%  Similarity=0.035  Sum_probs=60.4

Q ss_pred             HHhhhcCCCCEEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEE---------------------------
Q psy9602         121 ITLRMAPIIDQMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMV---------------------------  168 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIa---------------------------  168 (239)
                      ++..+++|..++.+=--+.     +..|+.+|+.++++.+.+.+..+++|+|+                           
T Consensus        49 ~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~~~lA~~~gAdGVHLg~~dl~~~~~  128 (243)
T 3o63_A           49 AEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDRADIARAAGADVLHLGQRDLPVNVA  128 (243)
T ss_dssp             HHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEECTTSSCHHHH
T ss_pred             HHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCHHHHHHHhCCCEEEecCCcCCHHHH
Confidence            3445677777765533321     23578888888888777766544566665                           


Q ss_pred             ----------ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC--CCCC-HHHHHHHHHHHHhhC-CCCcEEE
Q psy9602         169 ----------QIGGTCFQEVVELAKHAESLNVHAVLCLPELFF--TPAS-VEDLVDYLRDVGEAA-PATPLFY  227 (239)
Q Consensus       169 ----------GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~--~~~s-~e~iv~yf~~Vaeat-pdLPIiL  227 (239)
                                |++..+.    +.++.|.+.|+|.+.+.|-+..  ++ . ...-.+.++.+.+.. .++||+.
T Consensus       129 r~~~~~~~~iG~S~ht~----~Ea~~A~~~GaDyI~vgpvf~T~tK~-~~~~~gl~~l~~~~~~~~~~iPvvA  196 (243)
T 3o63_A          129 RQILAPDTLIGRSTHDP----DQVAAAAAGDADYFCVGPCWPTPTKP-GRAAPGLGLVRVAAELGGDDKPWFA  196 (243)
T ss_dssp             HHHSCTTCEEEEEECSH----HHHHHHHHSSCSEEEECCSSCCCC------CCCHHHHHHHHTC---CCCEEE
T ss_pred             HHhhCCCCEEEEeCCCH----HHHHHHhhCCCCEEEEcCccCCCCCC-CcchhhHHHHHHHHHhccCCCCEEE
Confidence                      2222222    3466788899999999874322  11 1 011256788887762 1788875

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=89.16  E-value=3.8  Score=41.10  Aligned_cols=54  Identities=13%  Similarity=0.064  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         174 CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       174 St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      +.+..+++++.+.++||+.+.+..-..+.  ++.++.+.++.|.+..|++||-++-
T Consensus       259 ~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~--~P~~v~~lV~~lk~~~p~~~I~~H~  312 (718)
T 3bg3_A          259 SLQYYMGLAEELVRAGTHILCIKDMAGLL--KPTACTMLVSSLRDRFPDLPLHIHT  312 (718)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECTTSCC--CHHHHHHHHHHHHHHSTTCCEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCcCCCc--CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            77999999999999999998888755433  6899999999999999888887753

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=89.16  E-value=2.2  Score=38.96  Aligned_cols=86  Identities=12%  Similarity=-0.026  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCC-EEEECC--CCC-----CCCCCHHHHHHHHH
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH-AVLCLP--ELF-----FTPASVEDLVDYLR  214 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAd-aVlV~P--P~y-----~~~~s~e~iv~yf~  214 (239)
                      ...++..+-++..... .- +.||++++++.+.++-++.++.+++.|++ ++-|--  |..     +.. +.+.+.+..+
T Consensus       110 ~G~~~~~~~l~~~~~~-~~-~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~-~~e~l~~il~  186 (345)
T 3oix_A          110 LGINYYLDYVTELQKQ-PD-SKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAY-DFETTDQILS  186 (345)
T ss_dssp             SCHHHHHHHHHHHHHS-TT-CCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGG-CHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhc-cC-CCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcC-CHHHHHHHHH
Confidence            3456666655543322 12 57999999999999999999999999987 665531  321     111 6788999999


Q ss_pred             HHHhhCCCCcEEEEeCCC
Q psy9602         215 DVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       215 ~VaeatpdLPIiLYN~P~  232 (239)
                      +|.+++ ++||.+==-|.
T Consensus       187 av~~~~-~~PV~vKi~p~  203 (345)
T 3oix_A          187 EVFTYF-TKPLGIKLPPY  203 (345)
T ss_dssp             HHTTTC-CSCEEEEECCC
T ss_pred             HHHHHh-CCCeEEEECCC
Confidence            999998 89999866664

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=89.16  E-value=0.97  Score=39.36  Aligned_cols=80  Identities=8%  Similarity=0.017  Sum_probs=55.2

Q ss_pred             HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602         121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF  200 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y  200 (239)
                      ++..++.|..+++.+.      ++    .++++.+.+.    ++|+|.|+.      +...+..|.++|+|.+-+.|-..
T Consensus        99 a~~Ai~AGA~fIvsP~------~~----~~vi~~~~~~----gi~~ipGv~------TptEi~~A~~~Gad~vK~FPa~~  158 (232)
T 4e38_A           99 ALAAKEAGATFVVSPG------FN----PNTVRACQEI----GIDIVPGVN------NPSTVEAALEMGLTTLKFFPAEA  158 (232)
T ss_dssp             HHHHHHHTCSEEECSS------CC----HHHHHHHHHH----TCEEECEEC------SHHHHHHHHHTTCCEEEECSTTT
T ss_pred             HHHHHHcCCCEEEeCC------CC----HHHHHHHHHc----CCCEEcCCC------CHHHHHHHHHcCCCEEEECcCcc
Confidence            3455677787776543      22    3566665553    589999987      24556778999999999976221


Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         201 FTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       201 ~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      . .     =.+|++++..-.|++|+|
T Consensus       159 ~-g-----G~~~lkal~~p~p~ip~~  178 (232)
T 4e38_A          159 S-G-----GISMVKSLVGPYGDIRLM  178 (232)
T ss_dssp             T-T-----HHHHHHHHHTTCTTCEEE
T ss_pred             c-c-----CHHHHHHHHHHhcCCCee
Confidence            1 1     148999999888788887

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=89.05  E-value=1.9  Score=39.50  Aligned_cols=58  Identities=9%  Similarity=0.082  Sum_probs=42.3

Q ss_pred             eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      ++.++++..  .+..+.++.+.+.|+|++.+-.++.    +++.+.+..+.+.+.+|++||++-
T Consensus       143 ~~~~~i~~~--~~~~~~a~~~~~~G~d~i~i~~~~g----~~~~~~e~i~~ir~~~~~~pviv~  200 (404)
T 1eep_A          143 RVGAAVSID--IDTIERVEELVKAHVDILVIDSAHG----HSTRIIELIKKIKTKYPNLDLIAG  200 (404)
T ss_dssp             CCEEEECSC--TTHHHHHHHHHHTTCSEEEECCSCC----SSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             eEEEEeCCC--hhHHHHHHHHHHCCCCEEEEeCCCC----ChHHHHHHHHHHHHHCCCCeEEEc
Confidence            456666642  3457778888899999999854432    336778888888888878999973

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=89.00  E-value=1.6  Score=36.98  Aligned_cols=76  Identities=12%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++-+.+.+...+..+++..+..+.....+.++.+.+.++|++++.|...      +.....++.+.+.  ++|++++
T Consensus        19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~------~~~~~~~~~~~~~--giPvV~~   90 (330)
T 3uug_A           19 IDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG------TTLSDVLKQAGEQ--GIKVIAY   90 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG------GGGHHHHHHHHHT--TCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc------hhHHHHHHHHHHC--CCCEEEE
Confidence            3344444333333246777767888888899999999999999999987531      2344455666554  7999999


Q ss_pred             eCCC
Q psy9602         229 HIPM  232 (239)
Q Consensus       229 N~P~  232 (239)
                      |.+.
T Consensus        91 ~~~~   94 (330)
T 3uug_A           91 DRLI   94 (330)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9864

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=88.88  E-value=4.1  Score=33.97  Aligned_cols=62  Identities=16%  Similarity=0.118  Sum_probs=46.3

Q ss_pred             CceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +..+++ ..+..+.+...+..+.+.+.++|++++.|...      +.....++.+.+.  ++|++++|.+.
T Consensus        34 g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~------~~~~~~~~~~~~~--~iPvV~~~~~~   96 (305)
T 3g1w_A           34 NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP------VELTDTINKAVDA--GIPIVLFDSGA   96 (305)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST------TTTHHHHHHHHHT--TCCEEEESSCC
T ss_pred             CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH------HHHHHHHHHHHHC--CCcEEEECCCC
Confidence            456666 67788899999999999999999999987532      1233455566554  79999999864

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=88.79  E-value=7  Score=36.77  Aligned_cols=84  Identities=10%  Similarity=0.037  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHHHHHhc------------------CCCce-EEEecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602         143 MTTAERKLNLEAWMTEAK------------------THGFT-VMVQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFT  202 (239)
Q Consensus       143 LT~eER~~li~~vve~~~------------------G~rvp-VIaGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~  202 (239)
                      -..+.-.+|++.+.+..+                  . ++| |++=+..+ +.++..+.++.++++|+|+|.+..-..-.
T Consensus       231 q~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~-~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r  309 (415)
T 3i65_A          231 QEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTK-KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQI  309 (415)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSS-SCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCC
T ss_pred             cCHHHHHHHHHHHHHHHHhhcccccccccccccccCC-CCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Confidence            445666778888887642                  2 578 88876654 44578999999999999999999754311


Q ss_pred             C-----------C----CHHHHHHHHHHHHhhCC-CCcEEE
Q psy9602         203 P-----------A----SVEDLVDYLRDVGEAAP-ATPLFY  227 (239)
Q Consensus       203 ~-----------~----s~e~iv~yf~~Vaeatp-dLPIiL  227 (239)
                      .           .    -..--.+....|.++++ ++|||.
T Consensus       310 ~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg  350 (415)
T 3i65_A          310 NDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIA  350 (415)
T ss_dssp             CCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred             ccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEE
Confidence            1           0    12334577778888774 588873

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=88.76  E-value=3.2  Score=38.20  Aligned_cols=91  Identities=10%  Similarity=-0.035  Sum_probs=53.6

Q ss_pred             hhhcCCCCEEEe-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-CCC
Q psy9602         123 LRMAPIIDQMVN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP-ELF  200 (239)
Q Consensus       123 ~~~~gg~glvV~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P-P~y  200 (239)
                      ..++.+..++++ .+.|     ..++..+.++.+.+...  ++|||+|...     +.+.++.++++|||+|.+-. |-.
T Consensus       115 ~lieaGvd~I~idta~G-----~~~~~~~~I~~ik~~~p--~v~Vi~G~v~-----t~e~A~~a~~aGAD~I~vG~gpGs  182 (366)
T 4fo4_A          115 ALVEAGVDVLLIDSSHG-----HSEGVLQRIRETRAAYP--HLEIIGGNVA-----TAEGARALIEAGVSAVKVGIGPGS  182 (366)
T ss_dssp             HHHHTTCSEEEEECSCT-----TSHHHHHHHHHHHHHCT--TCEEEEEEEC-----SHHHHHHHHHHTCSEEEECSSCST
T ss_pred             HHHhCCCCEEEEeCCCC-----CCHHHHHHHHHHHHhcC--CCceEeeeeC-----CHHHHHHHHHcCCCEEEEecCCCC
Confidence            345666666544 3333     23567777888887763  5899887332     24567778889999999931 111


Q ss_pred             ---------CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         201 ---------FTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       201 ---------~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                               +.. .+-..+.-..+.++.. ++|||.
T Consensus       183 ~~~tr~~~g~g~-p~~~~l~~v~~~~~~~-~iPVIA  216 (366)
T 4fo4_A          183 ICTTRIVTGVGV-PQITAIADAAGVANEY-GIPVIA  216 (366)
T ss_dssp             TBCHHHHHCCCC-CHHHHHHHHHHHHGGG-TCCEEE
T ss_pred             CCCcccccCccc-chHHHHHHHHHHHhhc-CCeEEE
Confidence                     111 2333333344445566 799874

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=88.48  E-value=1.6  Score=37.41  Aligned_cols=76  Identities=16%  Similarity=0.036  Sum_probs=49.1

Q ss_pred             hhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602         123 LRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT  202 (239)
Q Consensus       123 ~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~  202 (239)
                      ..++.|.++++.|.+      +    ..+++.....    .+++|.|+.  +..    .+..|.+.|+|.+.+.|     
T Consensus        93 ~A~~aGAd~v~~p~~------d----~~v~~~~~~~----g~~~i~G~~--t~~----e~~~A~~~Gad~vk~FP-----  147 (225)
T 1mxs_A           93 AVEAAGAQFVVTPGI------T----EDILEAGVDS----EIPLLPGIS--TPS----EIMMGYALGYRRFKLFP-----  147 (225)
T ss_dssp             HHHHHTCSSEECSSC------C----HHHHHHHHHC----SSCEECEEC--SHH----HHHHHHTTTCCEEEETT-----
T ss_pred             HHHHCCCCEEEeCCC------C----HHHHHHHHHh----CCCEEEeeC--CHH----HHHHHHHCCCCEEEEcc-----
Confidence            345556655554432      1    2444444441    578888853  333    45778899999999944     


Q ss_pred             CCCHHHH--HHHHHHHHhhCCCCcEE
Q psy9602         203 PASVEDL--VDYLRDVGEAAPATPLF  226 (239)
Q Consensus       203 ~~s~e~i--v~yf~~VaeatpdLPIi  226 (239)
                      .   +.+  .+|++.+....|++|++
T Consensus       148 a---~~~~G~~~lk~i~~~~~~ipvv  170 (225)
T 1mxs_A          148 A---EISGGVAAIKAFGGPFGDIRFC  170 (225)
T ss_dssp             H---HHHTHHHHHHHHHTTTTTCEEE
T ss_pred             C---ccccCHHHHHHHHhhCCCCeEE
Confidence            2   333  78999999988888886

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=88.44  E-value=4.9  Score=35.56  Aligned_cols=82  Identities=13%  Similarity=0.098  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHh-------cCCCceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCC-----------CCC--
Q psy9602         145 TAERKLNLEAWMTEA-------KTHGFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCLPELF-----------FTP--  203 (239)
Q Consensus       145 ~eER~~li~~vve~~-------~G~rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~PP~y-----------~~~--  203 (239)
                      .+.-.++++.+.+.+       +. ++||++=++. .+.++..++++.++++|+|++.+..-.+           ...  
T Consensus       187 ~~~~~~il~~vr~~~~~~~~~~g~-~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg  265 (336)
T 1f76_A          187 GEALDDLLTAIKNKQNDLQAMHHK-YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGG  265 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTS-CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSE
T ss_pred             HHHHHHHHHHHHHHHHhhhhcccc-cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCC
Confidence            344457788777776       23 5899997764 4556889999999999999999974211           000  


Q ss_pred             CC----HHHHHHHHHHHHhhCC-CCcEEE
Q psy9602         204 AS----VEDLVDYLRDVGEAAP-ATPLFY  227 (239)
Q Consensus       204 ~s----~e~iv~yf~~Vaeatp-dLPIiL  227 (239)
                      .+    .....++.+.+.++++ ++||+.
T Consensus       266 ~~g~~~~~~~~~~i~~i~~~~~~~ipVi~  294 (336)
T 1f76_A          266 LSGRPLQLKSTEIIRRLSLELNGRLPIIG  294 (336)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred             cCCchhHHHHHHHHHHHHHHhCCCCCEEE
Confidence            01    1233466677777664 688874

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=88.39  E-value=1.1  Score=39.29  Aligned_cols=62  Identities=10%  Similarity=0.142  Sum_probs=44.9

Q ss_pred             ceEEEecC-CCCHHHHHHHHHHHHhCCCCEEEECCC------CCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         164 FTVMVQIG-GTCFQEVVELAKHAESLNVHAVLCLPE------LFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       164 vpVIaGVg-~~St~eAIelar~A~~aGAdaVlV~PP------~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .-||+|.. ..|.+.++++++.++++|+++|.....      |.|+... ++=+..++++++.. ++|++-
T Consensus        24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~-~egl~~l~~~~~~~-Gl~~~t   92 (262)
T 1zco_A           24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYG-EKALRWMREAADEY-GLVTVT   92 (262)
T ss_dssp             CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCT-HHHHHHHHHHHHHH-TCEEEE
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCcc-HHHHHHHHHHHHHc-CCcEEE
Confidence            45777875 458999999999999999999998742      1222212 44556677777888 899873

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=88.27  E-value=2.1  Score=37.45  Aligned_cols=71  Identities=13%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF  233 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~  233 (239)
                      +-.|++-+.+.+.++.++.++.+.+.|||.|=+=-=++-...+.+.+.+-...+.+..+++||++=.-+..
T Consensus        19 ~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~   89 (258)
T 4h3d_A           19 RPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVV   89 (258)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGG
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechh
Confidence            44577899999999999999999999999998876554332267888888888888776899987655543

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=88.23  E-value=3  Score=37.10  Aligned_cols=74  Identities=18%  Similarity=0.102  Sum_probs=59.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC---CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT---CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVG  217 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~---St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va  217 (239)
                      ..+|.+|-....+.++..++  +.+|++-....   |.+++++.+....++||++|-+-        +.+++.+-.+.+.
T Consensus        58 ~~vtldemi~h~~aV~r~~~--~~~vvaD~pfgsy~~~~~a~~~a~rl~kaGa~aVklE--------gg~e~~~~I~al~  127 (264)
T 1m3u_A           58 LPVTVADIAYHTAAVRRGAP--NCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIE--------GGEWLVETVQMLT  127 (264)
T ss_dssp             TTCCHHHHHHHHHHHHHHCT--TSEEEEECCTTSSSSHHHHHHHHHHHHHTTCSEEECC--------CSGGGHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhhCC--CCcEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEC--------CcHHHHHHHHHHH
Confidence            46899999999999998774  46777744332   89999999999999999999887        3356888888888


Q ss_pred             hhCCCCcEE
Q psy9602         218 EAAPATPLF  226 (239)
Q Consensus       218 eatpdLPIi  226 (239)
                      ++  ++|++
T Consensus       128 ~a--gipV~  134 (264)
T 1m3u_A          128 ER--AVPVC  134 (264)
T ss_dssp             HT--TCCEE
T ss_pred             HC--CCCeE
Confidence            86  69988

>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A

Probab=88.22  E-value=1.9  Score=37.60  Aligned_cols=60  Identities=12%  Similarity=-0.002  Sum_probs=43.8

Q ss_pred             ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC-CCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         169 QIGGTCFQEVVELAKHAESLNVHAVLCLPELF-FTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       169 GVg~~St~eAIelar~A~~aGAdaVlV~PP~y-~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      ++--...+++++.++.+.+.|+.+|.+.+.+. +.. +++.+...|+.+.+.  ++||+++-..
T Consensus       120 ~l~~~~~~~a~~el~~~~~~g~~Gv~l~~~~~~~~l-~d~~~~p~~~~~~e~--~lpv~iH~~~  180 (334)
T 2hbv_A          120 QVPLQDLDLACKEASRAVAAGHLGIQIGNHLGDKDL-DDATLEAFLTHCANE--DIPILVHPWD  180 (334)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHTCCCEEEESCBTTBCT-TSHHHHHHHHHHHHT--TCCEEEECCS
T ss_pred             ecCccCHHHHHHHHHHHHHcCCeEEEECCCCCCCCC-CcHHHHHHHHHHHHC--CCEEEECCCC
Confidence            44444556788888888889999997766432 223 678888888887764  8999998653

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=88.21  E-value=1.5  Score=37.16  Aligned_cols=79  Identities=10%  Similarity=0.021  Sum_probs=49.6

Q ss_pred             HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602         122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF  201 (239)
Q Consensus       122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~  201 (239)
                      +..++.|.++++.|.+      +    .++++.....    +++++.|+.  +..+    +..|.+.|+|.+.+.|..  
T Consensus        82 ~~A~~aGAd~v~~p~~------d----~~v~~~~~~~----g~~~i~G~~--t~~e----~~~A~~~Gad~v~~Fpa~--  139 (214)
T 1wbh_A           82 AEVTEAGAQFAISPGL------T----EPLLKAATEG----TIPLIPGIS--TVSE----LMLGMDYGLKEFKFFPAE--  139 (214)
T ss_dssp             HHHHHHTCSCEEESSC------C----HHHHHHHHHS----SSCEEEEES--SHHH----HHHHHHTTCCEEEETTTT--
T ss_pred             HHHHHcCCCEEEcCCC------C----HHHHHHHHHh----CCCEEEecC--CHHH----HHHHHHCCCCEEEEecCc--
Confidence            3445556665555432      1    2444544442    578898853  3443    567889999999995511  


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         202 TPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       202 ~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                       .   -.=.+|++.+....|++|++
T Consensus       140 -~---~gG~~~lk~i~~~~~~ipvv  160 (214)
T 1wbh_A          140 -A---NGGVKALQAIAGPFSQVRFC  160 (214)
T ss_dssp             -T---TTHHHHHHHHHTTCTTCEEE
T ss_pred             -c---ccCHHHHHHHhhhCCCCeEE
Confidence             1   11168999999888788886

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=88.17  E-value=7.6  Score=34.75  Aligned_cols=93  Identities=9%  Similarity=-0.009  Sum_probs=58.2

Q ss_pred             HHhhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC-----CCHHHHHHHHHHHHhCCCCEEE
Q psy9602         121 ITLRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG-----TCFQEVVELAKHAESLNVHAVL  194 (239)
Q Consensus       121 v~~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~-----~St~eAIelar~A~~aGAdaVl  194 (239)
                      ++..++.|.. +-+-...|   +=..++..+-+..+++.+....+|+|+-..-     .+.+-....++.|.++|||.|=
T Consensus       131 ve~Av~~GAdaV~~~i~~G---s~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VK  207 (295)
T 3glc_A          131 MDDAVRLNSCAVAAQVYIG---SEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIK  207 (295)
T ss_dssp             HHHHHHTTCSEEEEEECTT---STTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHCCCCEEEEEEECC---CCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEE
Confidence            5566666654 32333344   2235566666667777765546899983211     2333345589999999999887


Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      ..+|    +   +    -|+.+.+.+ .+||++-
T Consensus       208 t~~t----~---e----~~~~vv~~~-~vPVv~~  229 (295)
T 3glc_A          208 TYYV----E---K----GFERIVAGC-PVPIVIA  229 (295)
T ss_dssp             EECC----T---T----THHHHHHTC-SSCEEEE
T ss_pred             eCCC----H---H----HHHHHHHhC-CCcEEEE
Confidence            7633    2   1    268888888 6998863

>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}

Probab=88.15  E-value=1.5  Score=38.65  Aligned_cols=99  Identities=5%  Similarity=-0.010  Sum_probs=63.1

Q ss_pred             CCCCEEEeccccCCcCCCHHHHHHHHHHH----HHHh---cCCCce-EEEecCCCCHHHHHHHHHHHH-hCCCCEEEECC
Q psy9602         127 PIIDQMVNGTTGEGVSMTTAERKLNLEAW----MTEA---KTHGFT-VMVQIGGTCFQEVVELAKHAE-SLNVHAVLCLP  197 (239)
Q Consensus       127 gg~glvV~GstGE~~sLT~eER~~li~~v----ve~~---~G~rvp-VIaGVg~~St~eAIelar~A~-~aGAdaVlV~P  197 (239)
                      |+..++...+.+.......++-..+++..    .+.+   .+ +.. .++-+.-.+.+.+++.++.+. +.|+.++.+.+
T Consensus        54 Gv~~vl~~~~~~~~~~~d~~~~~~~~r~~N~~l~~~~~~~p~-rf~g~~a~vp~~~~~~a~~el~r~~~~~G~~Gv~l~~  132 (312)
T 3ij6_A           54 NTKQVISLANISPEDFTDSKTSAELCQSANEELSNLVDQHPG-KFAGAVAILPMNNIESACKVISSIKDDENLVGAQIFT  132 (312)
T ss_dssp             TEEEEEEECSCCGGGTSCHHHHHHHHHHHHHHHHHHHHHCTT-TEEEEEEECCTTCHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred             CCeEEEECCCCcccccCCHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeEEecCccCHHHHHHHHHHHHHhCCCceEeccC
Confidence            33344555555554555666655554333    2222   33 443 455555556788888888885 68999999876


Q ss_pred             CCC-CCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         198 ELF-FTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       198 P~y-~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      .+. ..+ +++.+...|+.+.+.  ++||.++-
T Consensus       133 ~~~~~~l-~d~~~~p~~~~~~e~--g~pv~iH~  162 (312)
T 3ij6_A          133 RHLGKSI-ADKEFRPVLAQAAKL--HVPLWMHP  162 (312)
T ss_dssp             EETTEET-TSTTTHHHHHHHHHT--TCCEEEEC
T ss_pred             CCCCCCC-CCccHHHHHHHHHHc--CCeEEEcC
Confidence            432 223 667888999988875  89999985

>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A

Probab=88.13  E-value=1  Score=39.04  Aligned_cols=98  Identities=13%  Similarity=0.048  Sum_probs=62.5

Q ss_pred             cCCCCEEEecccc-CCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC---C
Q psy9602         126 APIIDQMVNGTTG-EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF---F  201 (239)
Q Consensus       126 ~gg~glvV~GstG-E~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y---~  201 (239)
                      .|+...++.+... +...-+.+   .+++.+. .-.+ ++--++|+--...+++++.++.+.+.|+.+|-+.|.+.   +
T Consensus        59 ~GV~~~V~~~~~~~~~~~~~N~---~~~~~~~-~~p~-r~~~~~~v~p~~~~~a~~eL~~~~~~g~~Gi~~~~~~~~~~~  133 (291)
T 3irs_A           59 AGIEQGVCVGRNSSVLGSVSNA---DVAAVAK-AYPD-KFHPVGSIEAATRKEAMAQMQEILDLGIRIVNLEPGVWATPM  133 (291)
T ss_dssp             TTCCEEEEECCEETTTEECCHH---HHHHHHH-HSTT-TEEEEEECCCSSHHHHHHHHHHHHHTTCCCEEECGGGSSSCC
T ss_pred             CCCCEEEEcCCCccccccccHH---HHHHHHH-HCCC-cEEEEEecCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC
Confidence            3555566666543 22112233   3444333 3445 66667787766677888877778899999999985321   2


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         202 TPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       202 ~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      .. +++.+...|+.+.+ . ++||+++--.
T Consensus       134 ~~-~d~~~~~~~~~a~e-~-glpv~iH~~~  160 (291)
T 3irs_A          134 HV-DDRRLYPLYAFCED-N-GIPVIMMTGG  160 (291)
T ss_dssp             CT-TCGGGHHHHHHHHH-T-TCCEEEECSS
T ss_pred             CC-CCHHHHHHHHHHHH-c-CCeEEEeCCC
Confidence            22 56778888887766 4 8999999754

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=88.11  E-value=7.5  Score=36.70  Aligned_cols=65  Identities=11%  Similarity=0.079  Sum_probs=45.8

Q ss_pred             Cce-EEEecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCCCCC-----------CC----HHHHHHHHHHHHhhCC-CCc
Q psy9602         163 GFT-VMVQIGG-TCFQEVVELAKHAESLNVHAVLCLPELFFTP-----------AS----VEDLVDYLRDVGEAAP-ATP  224 (239)
Q Consensus       163 rvp-VIaGVg~-~St~eAIelar~A~~aGAdaVlV~PP~y~~~-----------~s----~e~iv~yf~~Vaeatp-dLP  224 (239)
                      ++| |++=+.. .+.++..+.++.++++|+|+|.+..-.....           .+    ..--.+....|.++++ ++|
T Consensus       296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iP  375 (443)
T 1tv5_A          296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP  375 (443)
T ss_dssp             SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCc
Confidence            578 8887765 4556899999999999999999998543211           00    1223577788888774 688


Q ss_pred             EEE
Q psy9602         225 LFY  227 (239)
Q Consensus       225 IiL  227 (239)
                      ||-
T Consensus       376 VIg  378 (443)
T 1tv5_A          376 IIA  378 (443)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=88.07  E-value=0.86  Score=39.61  Aligned_cols=61  Identities=11%  Similarity=0.077  Sum_probs=45.1

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-----------------HHHHHHHHHHHHhh-CCCCcEEE--Ee
Q psy9602         170 IGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPAS-----------------VEDLVDYLRDVGEA-APATPLFY--YH  229 (239)
Q Consensus       170 Vg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s-----------------~e~iv~yf~~Vaea-tpdLPIiL--YN  229 (239)
                      .+..+.++.++.++..++.|+|++.+--|+.-+..+                 -+...+..++|.+. + ++||++  |.
T Consensus        25 ~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~Pv~lm~y~  103 (268)
T 1qop_A           25 LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHP-TIPIGLLMYA  103 (268)
T ss_dssp             TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-SSCEEEEECH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCEEEEEcc
Confidence            356667999999999999999999999887422111                 13344667888887 6 899977  66


Q ss_pred             CC
Q psy9602         230 IP  231 (239)
Q Consensus       230 ~P  231 (239)
                      +|
T Consensus       104 n~  105 (268)
T 1qop_A          104 NL  105 (268)
T ss_dssp             HH
T ss_pred             cH
Confidence            66

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=87.82  E-value=1.8  Score=39.70  Aligned_cols=87  Identities=11%  Similarity=-0.003  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHH---hCCCCEEEECC--CCC--CCCC--CHHHHHHHH
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAE---SLNVHAVLCLP--ELF--FTPA--SVEDLVDYL  213 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~---~aGAdaVlV~P--P~y--~~~~--s~e~iv~yf  213 (239)
                      ...+...+-++...+  .. +.||++++.+.+.++-++.++.++   +.|+|++-|--  |..  ...+  +.+.+.+..
T Consensus       109 ~G~~~~~~~l~~~~~--~~-~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il  185 (354)
T 4ef8_A          109 NGFDFYLAYAAEQHD--YG-KKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCL  185 (354)
T ss_dssp             CCHHHHHHHHHHTCC--TT-TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhh--cC-CCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHH
Confidence            445665554443221  11 579999999999999999999998   67999998632  321  1111  678999999


Q ss_pred             HHHHhhCCCCcEEEEeCCCC
Q psy9602         214 RDVGEAAPATPLFYYHIPMF  233 (239)
Q Consensus       214 ~~VaeatpdLPIiLYN~P~~  233 (239)
                      ++|.+++ ++||++==-|..
T Consensus       186 ~av~~~~-~~PV~vKi~p~~  204 (354)
T 4ef8_A          186 TAVSEVY-PHSFGVKMPPYF  204 (354)
T ss_dssp             HHHHHHC-CSCEEEEECCCC
T ss_pred             HHHHHhh-CCCeEEEecCCC
Confidence            9999998 899998766653

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=87.82  E-value=4  Score=37.35  Aligned_cols=88  Identities=8%  Similarity=-0.008  Sum_probs=52.8

Q ss_pred             hhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEECC----
Q psy9602         124 RMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ-IGGTCFQEVVELAKHAESLNVHAVLCLP----  197 (239)
Q Consensus       124 ~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG-Vg~~St~eAIelar~A~~aGAdaVlV~P----  197 (239)
                      .++.+.+++ ++.+.|     +.+.-.++++.+.+...  ++||+++ +..      .+.++.++++|+|++.+..    
T Consensus       161 ~~~~G~d~i~i~~~~g-----~~~~~~e~i~~ir~~~~--~~pviv~~v~~------~~~a~~a~~~Gad~I~vg~~~G~  227 (404)
T 1eep_A          161 LVKAHVDILVIDSAHG-----HSTRIIELIKKIKTKYP--NLDLIAGNIVT------KEAALDLISVGADCLKVGIGPGS  227 (404)
T ss_dssp             HHHTTCSEEEECCSCC-----SSHHHHHHHHHHHHHCT--TCEEEEEEECS------HHHHHHHHTTTCSEEEECSSCST
T ss_pred             HHHCCCCEEEEeCCCC-----ChHHHHHHHHHHHHHCC--CCeEEEcCCCc------HHHHHHHHhcCCCEEEECCCCCc
Confidence            345555554 433333     23566777888887763  5899974 332      4678889999999999931    


Q ss_pred             -------CCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         198 -------ELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       198 -------P~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                             +.+ .. .+-+.+.....+.... ++||+.
T Consensus       228 ~~~~~~~~~~-g~-p~~~~l~~v~~~~~~~-~ipVia  261 (404)
T 1eep_A          228 ICTTRIVAGV-GV-PQITAICDVYEACNNT-NICIIA  261 (404)
T ss_dssp             TSHHHHHHCC-CC-CHHHHHHHHHHHHTTS-SCEEEE
T ss_pred             CcCccccCCC-Cc-chHHHHHHHHHHHhhc-CceEEE
Confidence                   111 11 2333444444454456 788874

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=87.71  E-value=2.3  Score=35.63  Aligned_cols=79  Identities=15%  Similarity=0.102  Sum_probs=49.6

Q ss_pred             HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602         122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF  201 (239)
Q Consensus       122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~  201 (239)
                      +..++.|..+++.|.+      +    ..+++.+.+.    .+|++.|+.  +.    +.+..|.+.|+|.+-+.|.   
T Consensus        77 ~~A~~~GAd~v~~~~~------d----~~v~~~~~~~----g~~~i~G~~--t~----~e~~~A~~~Gad~v~~fpa---  133 (207)
T 2yw3_A           77 EAALEAGAAFLVSPGL------L----EEVAALAQAR----GVPYLPGVL--TP----TEVERALALGLSALKFFPA---  133 (207)
T ss_dssp             HHHHHHTCSEEEESSC------C----HHHHHHHHHH----TCCEEEEEC--SH----HHHHHHHHTTCCEEEETTT---
T ss_pred             HHHHHcCCCEEEcCCC------C----HHHHHHHHHh----CCCEEecCC--CH----HHHHHHHHCCCCEEEEecC---
Confidence            3445666766655431      1    2455555552    478888854  33    3456678889999999551   


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         202 TPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       202 ~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      ..   -.=.+|++.+....|++|++
T Consensus       134 ~~---~gG~~~lk~l~~~~~~ipvv  155 (207)
T 2yw3_A          134 EP---FQGVRVLRAYAEVFPEVRFL  155 (207)
T ss_dssp             TT---TTHHHHHHHHHHHCTTCEEE
T ss_pred             cc---ccCHHHHHHHHhhCCCCcEE
Confidence            11   10147788888888778886

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=87.65  E-value=3.7  Score=34.58  Aligned_cols=62  Identities=13%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +..+++.....+.....+..+.+.+.++|++++.|...-      .+...++.+.+.  ++|++++|.+.
T Consensus        32 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~------~~~~~~~~~~~~--~iPvV~~~~~~   93 (313)
T 3m9w_A           32 GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQ------VLSNVVKEAKQE--GIKVLAYDRMI   93 (313)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTT------SCHHHHHHHHTT--TCEEEEESSCC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh------hhHHHHHHHHHC--CCeEEEECCcC
Confidence            466777666778888899999999999999999975421      123445555554  79999999754

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*

Probab=87.63  E-value=7.6  Score=35.61  Aligned_cols=105  Identities=8%  Similarity=0.006  Sum_probs=70.8

Q ss_pred             HHhhhcCCCCE-EEeccccCC----cCCCHHHHHHHHHHHHHHhcCCC--ceEEEecC---CCCHHHHHHHHHHHHhCCC
Q psy9602         121 ITLRMAPIIDQ-MVNGTTGEG----VSMTTAERKLNLEAWMTEAKTHG--FTVMVQIG---GTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       121 v~~~~~gg~gl-vV~GstGE~----~sLT~eER~~li~~vve~~~G~r--vpVIaGVg---~~St~eAIelar~A~~aGA  190 (239)
                      ++...+.|... -++.++++.    ...|.+|-.+.+..+++.++...  +.|.++..   ..+.+..++.++.+.++ |
T Consensus        80 i~~a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a  158 (382)
T 2ztj_A           80 AKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-V  158 (382)
T ss_dssp             HHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-C
T ss_pred             HHHHHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-c
Confidence            34445556654 477888885    44588886666666665554323  66666553   44678899999999999 9


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhC-CCCcEEEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAA-PATPLFYY  228 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~Vaeat-pdLPIiLY  228 (239)
                      +.+.+..-..+.  ++.++.+.++.|.+.. |++||-++
T Consensus       159 ~~i~l~DT~G~~--~P~~~~~lv~~l~~~~~~~~~i~~H  195 (382)
T 2ztj_A          159 DRVGLADTVGVA--TPRQVYALVREVRRVVGPRVDIEFH  195 (382)
T ss_dssp             SEEEEEETTSCC--CHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CEEEecCCCCCC--CHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            988887654432  6899999999998873 37888765

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=87.62  E-value=5.3  Score=32.93  Aligned_cols=78  Identities=6%  Similarity=-0.003  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT  223 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL  223 (239)
                      +..=..++++.+.+.+...+..+++.....+.+...+..+...+.++|++++.|...         ...++.+.+ . ++
T Consensus        18 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---------~~~~~~l~~-~-~i   86 (276)
T 3jy6_A           18 DDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---------PQTVQEILH-Q-QM   86 (276)
T ss_dssp             TSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---------HHHHHHHHT-T-SS
T ss_pred             CchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---------HHHHHHHHH-C-CC
Confidence            444556666666665554457777777777888888899999999999999997542         234455554 4 79


Q ss_pred             cEEEEeCCC
Q psy9602         224 PLFYYHIPM  232 (239)
Q Consensus       224 PIiLYN~P~  232 (239)
                      |+++.|.+.
T Consensus        87 PvV~i~~~~   95 (276)
T 3jy6_A           87 PVVSVDREM   95 (276)
T ss_dssp             CEEEESCCC
T ss_pred             CEEEEeccc
Confidence            999998754

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=87.61  E-value=1.9  Score=36.98  Aligned_cols=79  Identities=11%  Similarity=0.081  Sum_probs=51.0

Q ss_pred             HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602         122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF  201 (239)
Q Consensus       122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~  201 (239)
                      +..++.|.++++.|.+-          ..+++.+.+ .   ..++|.|+.  +..+    +..|.+.|+|.+.+.|.   
T Consensus        83 ~~A~~aGAd~v~~p~~d----------~~v~~~ar~-~---g~~~i~Gv~--t~~e----~~~A~~~Gad~vk~Fpa---  139 (224)
T 1vhc_A           83 VLAKSSGADFVVTPGLN----------PKIVKLCQD-L---NFPITPGVN--NPMA----IEIALEMGISAVKFFPA---  139 (224)
T ss_dssp             HHHHHHTCSEEECSSCC----------HHHHHHHHH-T---TCCEECEEC--SHHH----HHHHHHTTCCEEEETTT---
T ss_pred             HHHHHCCCCEEEECCCC----------HHHHHHHHH-h---CCCEEeccC--CHHH----HHHHHHCCCCEEEEeeC---
Confidence            34456667776655321          345565555 2   468888843  3444    46688999999999551   


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         202 TPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       202 ~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      ..   -.=.+|++++....|++|++
T Consensus       140 ~~---~gG~~~lk~l~~~~~~ipvv  161 (224)
T 1vhc_A          140 EA---SGGVKMIKALLGPYAQLQIM  161 (224)
T ss_dssp             TT---TTHHHHHHHHHTTTTTCEEE
T ss_pred             cc---ccCHHHHHHHHhhCCCCeEE
Confidence            11   11268899999888778885

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=87.59  E-value=5.8  Score=33.18  Aligned_cols=63  Identities=6%  Similarity=-0.047  Sum_probs=45.2

Q ss_pred             CceEEEecCC--CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Q psy9602         163 GFTVMVQIGG--TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF  233 (239)
Q Consensus       163 rvpVIaGVg~--~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~  233 (239)
                      +..+++....  .+.....+..+.+.+.++|++++.|...-      .+...++.+.+.  ++|++++|.+..
T Consensus        33 g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~------~~~~~~~~~~~~--giPvV~~~~~~~   97 (297)
T 3rot_A           33 KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT------AFSKSLQRANKL--NIPVIAVDTRPK   97 (297)
T ss_dssp             TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS------TTHHHHHHHHHH--TCCEEEESCCCS
T ss_pred             CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH------HHHHHHHHHHHC--CCCEEEEcCCCc
Confidence            4566665544  58888899999999999999999875422      223445566655  799999997643

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=87.59  E-value=15  Score=33.60  Aligned_cols=83  Identities=16%  Similarity=0.162  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHHHHHhc-----CCCceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCCCCC-------------C
Q psy9602         144 TTAERKLNLEAWMTEAK-----THGFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCLPELFFTP-------------A  204 (239)
Q Consensus       144 T~eER~~li~~vve~~~-----G~rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~PP~y~~~-------------~  204 (239)
                      +.+.-.++++.+.+..+     . ++||++=+.. .+.++..+.++.++++|+|++.+..-....+             .
T Consensus       197 ~~~~l~~ll~av~~~~~~~~~~~-~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGl  275 (367)
T 3zwt_A          197 GKAELRRLLTKVLQERDGLRRVH-RPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGL  275 (367)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCGGG-CCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEE
T ss_pred             CHHHHHHHHHHHHHHHhhccccC-CceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCc
Confidence            44555677777776521     2 6899997664 3556889999999999999999985321110             0


Q ss_pred             ----CHHHHHHHHHHHHhhCC-CCcEEE
Q psy9602         205 ----SVEDLVDYLRDVGEAAP-ATPLFY  227 (239)
Q Consensus       205 ----s~e~iv~yf~~Vaeatp-dLPIiL  227 (239)
                          -..--.+....|.++++ ++|||.
T Consensus       276 SG~~i~p~a~~~v~~i~~~v~~~ipvI~  303 (367)
T 3zwt_A          276 SGKPLRDLSTQTIREMYALTQGRVPIIG  303 (367)
T ss_dssp             EEGGGHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred             CCcccchhHHHHHHHHHHHcCCCceEEE
Confidence                12233577788888875 688874

>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}

Probab=87.52  E-value=7.3  Score=33.15  Aligned_cols=76  Identities=11%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhcCC-CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         149 KLNLEAWMTEAKTH-GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       149 ~~li~~vve~~~G~-rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .++++-+.+.+... +..+++.....+.....+.++...+.++|++++.|+      +.+.+...++.+.+ . ++|+++
T Consensus        21 ~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~------~~~~~~~~~~~~~~-~-~iPvV~   92 (325)
T 2x7x_A           21 HKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN------EAAPMTPIVEEAYQ-K-GIPVIL   92 (325)
T ss_dssp             HHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS------SHHHHHHHHHHHHH-T-TCCEEE
T ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC------CHHHHHHHHHHHHH-C-CCeEEE
Confidence            34555555555432 467777666677888888888888899999999863      22334455555554 4 799999


Q ss_pred             EeCCC
Q psy9602         228 YHIPM  232 (239)
Q Consensus       228 YN~P~  232 (239)
                      +|.+.
T Consensus        93 ~~~~~   97 (325)
T 2x7x_A           93 VDRKI   97 (325)
T ss_dssp             ESSCC
T ss_pred             eCCCC
Confidence            98753

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=87.38  E-value=1.6  Score=38.58  Aligned_cols=66  Identities=14%  Similarity=0.143  Sum_probs=48.8

Q ss_pred             EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-----------------CHHHHHHHHHHHHhhCCCCcEEE--E
Q psy9602         168 VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-----------------SVEDLVDYLRDVGEAAPATPLFY--Y  228 (239)
Q Consensus       168 aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-----------------s~e~iv~yf~~VaeatpdLPIiL--Y  228 (239)
                      +-.|..+.+.+++.++..++.|||.+-+--|+.-+..                 +-+.+++..+++.+..+++|+++  |
T Consensus        26 i~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y  105 (271)
T 3nav_A           26 VTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMY  105 (271)
T ss_dssp             EETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred             EeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            3568889999999999999999999999999831111                 22355667777776623899977  7


Q ss_pred             eCCCC
Q psy9602         229 HIPMF  233 (239)
Q Consensus       229 N~P~~  233 (239)
                      -+|..
T Consensus       106 ~n~v~  110 (271)
T 3nav_A          106 ANLVY  110 (271)
T ss_dssp             HHHHH
T ss_pred             CcHHH
Confidence            67743

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=87.23  E-value=1  Score=40.31  Aligned_cols=68  Identities=15%  Similarity=0.083  Sum_probs=42.6

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--CHHHHHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--SVEDLVDYLRDVG  217 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--s~e~iv~yf~~Va  217 (239)
                      ..++.-+   .+..+.+.+ + ++|||+.=+=.+.+++.+..    .+|||+|++..|..+...  .++.+.++++.+.
T Consensus       234 ~g~~~~~---~l~~v~~~~-~-~ipvia~GGI~~~~d~~k~l----~~GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~  303 (349)
T 1p0k_A          234 WGISTAA---SLAEIRSEF-P-ASTMIASGGLQDALDVAKAI----ALGASCTGMAGHFLKALTDSGEEGLLEEIQLIL  303 (349)
T ss_dssp             CSCCHHH---HHHHHHHHC-T-TSEEEEESSCCSHHHHHHHH----HTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccHHH---HHHHHHHhc-C-CCeEEEECCCCCHHHHHHHH----HcCCCEEEEcHHHHHHHhhcCHHHHHHHHHHHH
Confidence            3455544   344455554 4 79999876667777777654    369999999998876521  2344444444443

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=87.23  E-value=4.7  Score=36.07  Aligned_cols=74  Identities=14%  Similarity=0.005  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH--------HHHHHHH
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQ-IGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVED--------LVDYLRD  215 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaG-Vg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~--------iv~yf~~  215 (239)
                      .+.-.++++.+.+..++  .||+.| +.  +    .+.++.|+++|||+|.+..-......+...        ......+
T Consensus       133 ~~~~~~~i~~lr~~~~~--~~vi~G~v~--s----~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~  204 (336)
T 1ypf_A          133 SNAVINMIQHIKKHLPE--SFVIAGNVG--T----PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW  204 (336)
T ss_dssp             SHHHHHHHHHHHHHCTT--SEEEEEEEC--S----HHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCC--CEEEECCcC--C----HHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHH
Confidence            34566788888887753  688877 43  2    467889999999999995311111101111        3567778


Q ss_pred             HHhhCCCCcEEE
Q psy9602         216 VGEAAPATPLFY  227 (239)
Q Consensus       216 VaeatpdLPIiL  227 (239)
                      ++++. ++|||.
T Consensus       205 v~~~~-~ipVIa  215 (336)
T 1ypf_A          205 CAKAA-SKPIIA  215 (336)
T ss_dssp             HHHTC-SSCEEE
T ss_pred             HHHHc-CCcEEE
Confidence            88888 899875

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=87.18  E-value=0.48  Score=41.46  Aligned_cols=65  Identities=9%  Similarity=-0.048  Sum_probs=45.5

Q ss_pred             eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE--Ee-CCCCccc
Q psy9602         165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY--YH-IPMFTRV  236 (239)
Q Consensus       165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL--YN-~P~~TG~  236 (239)
                      -+++|-  .+.+...+.++...+.|+|++.+---.  . .+.+.+++..+++.+ + ++||+|  |+ +|...|+
T Consensus        11 ~i~~gD--P~~~~t~~~~~~l~~~GaD~ielG~S~--G-vt~~~~~~~v~~ir~-~-~~Pivlm~y~~n~i~~G~   78 (240)
T 1viz_A           11 HVFKLD--PNKDLPDEQLEILCESGTDAVIIGGSD--G-VTEDNVLRMMSKVRR-F-LVPCVLEVSAIEAIVPGF   78 (240)
T ss_dssp             EEEEEC--TTSCCCHHHHHHHHTSCCSEEEECC-------CHHHHHHHHHHHTT-S-SSCEEEECSCGGGCCSCC
T ss_pred             EEEeeC--CCccccHHHHHHHHHcCCCEEEECCCC--C-CCHHHHHHHHHHhhC-c-CCCEEEecCccccccCCC
Confidence            344443  444445566788899999999998521  2 277889999999987 6 899997  55 6655554

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=86.71  E-value=0.78  Score=42.58  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=55.3

Q ss_pred             CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--
Q psy9602         127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--  204 (239)
Q Consensus       127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--  204 (239)
                      |.++++|.|+.|....-.. --.+++..+++.+++ ++|||+.=+=.+-.++++..    .+|||+|++--|+++...  
T Consensus       273 Gad~I~vs~~ggr~~~~g~-~~~~~l~~v~~av~~-~ipVia~GGI~~g~Dv~kal----alGAd~V~iGr~~l~~~~~~  346 (392)
T 2nzl_A          273 GLNGILVSNHGARQLDGVP-ATIDVLPEIVEAVEG-KVEVFLDGGVRKGTDVLKAL----ALGAKAVFVGRPIVWGLAFQ  346 (392)
T ss_dssp             TCCEEEECCGGGTSSTTCC-CHHHHHHHHHHHHTT-SSEEEECSSCCSHHHHHHHH----HTTCSEEEECHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCcCCCCc-ChHHHHHHHHHHcCC-CCEEEEECCCCCHHHHHHHH----HhCCCeeEECHHHHHHHHhc
Confidence            4456778777774322221 223556666777777 89999865656666666543    479999999998876531  


Q ss_pred             CHHHHHHHHHHHHhh
Q psy9602         205 SVEDLVDYLRDVGEA  219 (239)
Q Consensus       205 s~e~iv~yf~~Vaea  219 (239)
                      .++.+.++++.+.+.
T Consensus       347 g~~gv~~~l~~l~~e  361 (392)
T 2nzl_A          347 GEKGVQDVLEILKEE  361 (392)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH
Confidence            345555666555543

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=86.66  E-value=0.74  Score=42.26  Aligned_cols=86  Identities=10%  Similarity=-0.008  Sum_probs=54.4

Q ss_pred             CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--
Q psy9602         127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--  204 (239)
Q Consensus       127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--  204 (239)
                      |.+++.|.|+.|....-... -.+++..+++.+.+ ++|||+.=+=.+-.++++.    ..+|||+|++--|+.+...  
T Consensus       250 Gad~I~vs~~ggr~~~~g~~-~~~~l~~v~~~v~~-~ipVia~GGI~~g~D~~ka----lalGAd~V~iGr~~l~~~~~~  323 (368)
T 2nli_A          250 GASGIWVSNHGARQLYEAPG-SFDTLPAIAERVNK-RVPIVFDSGVRRGEHVAKA----LASGADVVALGRPVLFGLALG  323 (368)
T ss_dssp             TCSEEEECCGGGTSCSSCCC-HHHHHHHHHHHHTT-SSCEEECSSCCSHHHHHHH----HHTTCSEEEECHHHHHHHHHH
T ss_pred             CCCEEEEcCCCcCCCCCCCC-hHHHHHHHHHHhCC-CCeEEEECCCCCHHHHHHH----HHcCCCEEEECHHHHHHHHhc
Confidence            44567788877743221111 23566667777777 7999986666666666644    3589999999998866521  


Q ss_pred             CHHHHHHHHHHHHh
Q psy9602         205 SVEDLVDYLRDVGE  218 (239)
Q Consensus       205 s~e~iv~yf~~Vae  218 (239)
                      .++.+.++++.+.+
T Consensus       324 G~~gv~~~l~~l~~  337 (368)
T 2nli_A          324 GWQGAYSVLDYFQK  337 (368)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            34555555555544

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=86.62  E-value=4.5  Score=33.92  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP  224 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP  224 (239)
                      ..=..++++-+.+.+...+..+++.....+.+...++.+...+.++|++++.|+..    + +.   .++.+.+ . ++|
T Consensus        24 ~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~----~-~~---~~~~l~~-~-~iP   93 (295)
T 3hcw_A           24 NPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKE----N-DP---IKQMLID-E-SMP   93 (295)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCT----T-CH---HHHHHHH-T-TCC
T ss_pred             ChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCccc----C-hH---HHHHHHh-C-CCC
Confidence            33445566666555554357777777777777778888889999999999997542    1 12   3344444 4 799


Q ss_pred             EEEEeCCC
Q psy9602         225 LFYYHIPM  232 (239)
Q Consensus       225 IiLYN~P~  232 (239)
                      ++++|.+.
T Consensus        94 vV~i~~~~  101 (295)
T 3hcw_A           94 FIVIGKPT  101 (295)
T ss_dssp             EEEESCCC
T ss_pred             EEEECCCC
Confidence            99998764

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=86.60  E-value=4.3  Score=37.93  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=40.5

Q ss_pred             HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      ++..++.+..++++.++.-   . .+...++++.+.+..   ++||++|... +    .+.++.+.++|||+|.+.
T Consensus       149 ~~~lveaGvdvIvldta~G---~-~~~~~e~I~~ik~~~---~i~Vi~g~V~-t----~e~A~~a~~aGAD~I~vG  212 (400)
T 3ffs_A          149 AKLLVEAGVDVIVLDSAHG---H-SLNIIRTLKEIKSKM---NIDVIVGNVV-T----EEATKELIENGADGIKVG  212 (400)
T ss_dssp             HHHHHHHTCSEEEECCSCC---S-BHHHHHHHHHHHTTC---CCEEEEEEEC-S----HHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHcCCCEEEEeCCCC---C-cccHHHHHHHHHhcC---CCeEEEeecC-C----HHHHHHHHHcCCCEEEEe
Confidence            3445677788777643321   1 244456666666554   4799984322 2    556788889999999994

>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}

Probab=86.59  E-value=2.9  Score=34.45  Aligned_cols=77  Identities=10%  Similarity=0.097  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHH-HHHhhCCC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLR-DVGEAAPA  222 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~-~Vaeatpd  222 (239)
                      +..=..++++.+.+.+...+..+++.....+.....++.+...+.++|++++.|     . +++    .++ .+.+ . +
T Consensus        19 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~-----~-~~~----~~~~~l~~-~-~   86 (277)
T 3e61_A           19 SNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA-----F-NEN----IIENTLTD-H-H   86 (277)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG-----G-GHH----HHHHHHHH-C--
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec-----C-ChH----HHHHHHHc-C-C
Confidence            334445555555554443356777777777888888899999999999999986     2 323    244 4544 4 7


Q ss_pred             CcEEEEeCCC
Q psy9602         223 TPLFYYHIPM  232 (239)
Q Consensus       223 LPIiLYN~P~  232 (239)
                      +|++++|.+.
T Consensus        87 iPvV~~~~~~   96 (277)
T 3e61_A           87 IPFVFIDRIN   96 (277)
T ss_dssp             CCEEEGGGCC
T ss_pred             CCEEEEeccC
Confidence            9999998864

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=86.46  E-value=5  Score=36.91  Aligned_cols=84  Identities=13%  Similarity=-0.007  Sum_probs=54.2

Q ss_pred             ccCCcCCCHHHHHHHHHHHH----HHhcCCCceEEEecC----------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602         137 TGEGVSMTTAERKLNLEAWM----TEAKTHGFTVMVQIG----------GTCFQEVVELAKHAESLNVHAVLCLPELFFT  202 (239)
Q Consensus       137 tGE~~sLT~eER~~li~~vv----e~~~G~rvpVIaGVg----------~~St~eAIelar~A~~aGAdaVlV~PP~y~~  202 (239)
                      +.|+--.+.+.|.+++..++    +.++. . ||.+=++          ..+.++++++++..++.|+|.+-+..+.+..
T Consensus       215 ~D~yGG~slenR~r~~~eiv~aVr~avg~-~-~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~  292 (379)
T 3aty_A          215 SGPYAGTTIDTRCQLIYDVTKSVCDAVGS-D-RVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN  292 (379)
T ss_dssp             SSTTCTTSHHHHHHHHHHHHHHHHHHHCG-G-GEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS
T ss_pred             cCCCCccChhhhHHHHHHHHHHHHHhcCC-C-eEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC
Confidence            45554447777765555444    44543 3 6666222          3467889999999999999999998754311


Q ss_pred             CCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         203 PASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       203 ~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +.-+.   + .+.|.+.+ ++||+.
T Consensus       293 ~~~~~---~-~~~ir~~~-~iPvi~  312 (379)
T 3aty_A          293 QQIGD---V-VAWVRGSY-SGVKIS  312 (379)
T ss_dssp             CCCCC---H-HHHHHTTC-CSCEEE
T ss_pred             CCccH---H-HHHHHHHC-CCcEEE
Confidence            10011   4 66777888 799886

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=86.42  E-value=9.4  Score=34.10  Aligned_cols=76  Identities=12%  Similarity=-0.011  Sum_probs=60.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecCC---CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG---TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVG  217 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~---~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va  217 (239)
                      ..+|.+|-..-++.++..++  +.||++-.-.   .|.+++++.+....+.||++|-+--        ..++.+..+.|.
T Consensus        70 ~~vtldem~~h~~aV~r~~~--~~~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklEd--------g~~~~~~i~~l~  139 (275)
T 3vav_A           70 LPVTLDDIAYHTACVARAQP--RALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEG--------GEWLAETVRFLV  139 (275)
T ss_dssp             TTCCHHHHHHHHHHHHHTCC--SSEEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEEC--------CGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHhcCC--CCCEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEECC--------chhHHHHHHHHH
Confidence            46899999999999998765  5899995532   6899999999998889999999873        234566777777


Q ss_pred             hhCCCCcEEEE
Q psy9602         218 EAAPATPLFYY  228 (239)
Q Consensus       218 eatpdLPIiLY  228 (239)
                      ++  ++|++-+
T Consensus       140 ~~--GIpv~gH  148 (275)
T 3vav_A          140 ER--AVPVCAH  148 (275)
T ss_dssp             HT--TCCEEEE
T ss_pred             HC--CCCEEEe
Confidence            75  7999854

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=86.39  E-value=4.8  Score=32.76  Aligned_cols=62  Identities=11%  Similarity=0.125  Sum_probs=44.2

Q ss_pred             CceEEEec--CCCCHHHHHHHHHHHHhCC-CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQI--GGTCFQEVVELAKHAESLN-VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGV--g~~St~eAIelar~A~~aG-AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +..+++..  +..+.+...+..+...+.+ +|++++.|... ..     ....++.+.+.  ++|++++|.+.
T Consensus        30 g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~-~~-----~~~~~~~~~~~--~ipvV~~~~~~   94 (276)
T 3ksm_A           30 GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSA-ED-----LTPSVAQYRAR--NIPVLVVDSDL   94 (276)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSST-TT-----THHHHHHHHHT--TCCEEEESSCC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCH-HH-----HHHHHHHHHHC--CCcEEEEecCC
Confidence            35666655  5678888889999999999 99999987532 11     23345555554  79999998754

>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*

Probab=86.13  E-value=4.3  Score=34.66  Aligned_cols=66  Identities=9%  Similarity=0.011  Sum_probs=45.3

Q ss_pred             CceEEEecCCCCHHHHHHHHHHH-HhCCCCEEEECCCCC------CCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHA-ESLNVHAVLCLPELF------FTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A-~~aGAdaVlV~PP~y------~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      ++--++++.-...+++++.++.+ .+.|+.+|-+.+.++      ....+++.+...|+.+.+.  ++||+++--
T Consensus        94 r~~~~~~v~p~~~~~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~lpv~iH~~  166 (327)
T 2dvt_A           94 RFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKL--DVPFYLHPR  166 (327)
T ss_dssp             TEEEEECCCTTSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHH--TCCEEEECC
T ss_pred             ceEEEeecCcCCHHHHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHc--CCeEEECCC
Confidence            45445666666677788888887 467999998766443      1112566777777777665  899999853

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=85.91  E-value=4  Score=33.77  Aligned_cols=75  Identities=12%  Similarity=0.134  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++-+.+.+...+..+++.....+.+...++.+...+.++|++++.|+..    + +   ..++.+.+ . ++|+++
T Consensus        28 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~----~-~---~~~~~l~~-~-~iPvV~   97 (292)
T 3k4h_A           28 FPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE----N-D---RIIQYLHE-Q-NFPFVL   97 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT----T-C---HHHHHHHH-T-TCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC----C-h---HHHHHHHH-C-CCCEEE
Confidence            44455555444443356777777777777778888889999999999987542    1 1   23445544 4 799999


Q ss_pred             EeCCC
Q psy9602         228 YHIPM  232 (239)
Q Consensus       228 YN~P~  232 (239)
                      +|.+.
T Consensus        98 ~~~~~  102 (292)
T 3k4h_A           98 IGKPY  102 (292)
T ss_dssp             ESCCS
T ss_pred             ECCCC
Confidence            98764

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=85.83  E-value=4.7  Score=33.48  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT  223 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL  223 (239)
                      +..=..++++-+.+.+...+..+++.....+.+...+..+...+.++|++++.|...  .   +   ..++.+.+ . ++
T Consensus        19 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~---~---~~~~~~~~-~-~i   88 (291)
T 3egc_A           19 ENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG--E---H---DYLRTELP-K-TF   88 (291)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--C---C---HHHHHSSC-T-TS
T ss_pred             cchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--C---h---HHHHHhhc-c-CC
Confidence            334445555555554443357777777777888888899999999999999998654  2   1   23344433 4 79


Q ss_pred             cEEEEeCCC
Q psy9602         224 PLFYYHIPM  232 (239)
Q Consensus       224 PIiLYN~P~  232 (239)
                      |++++|.+.
T Consensus        89 PvV~~~~~~   97 (291)
T 3egc_A           89 PIVAVNREL   97 (291)
T ss_dssp             CEEEESSCC
T ss_pred             CEEEEeccc
Confidence            999999864

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=85.79  E-value=2.2  Score=36.94  Aligned_cols=79  Identities=14%  Similarity=0.198  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC--------------------CCCC
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL--------------------FFTP  203 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~--------------------y~~~  203 (239)
                      +.+.-.++++.+.+.+   ++||++-+.. +..+..++++.++++|+|++.+....                    +..+
T Consensus       148 ~~~~~~eii~~v~~~~---~~pv~vk~~~-~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~  223 (311)
T 1ep3_A          148 DPEVAAALVKACKAVS---KVPLYVKLSP-NVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGP  223 (311)
T ss_dssp             CHHHHHHHHHHHHHHC---SSCEEEEECS-CSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESG
T ss_pred             CHHHHHHHHHHHHHhc---CCCEEEEECC-ChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCc
Confidence            4555578888887765   4799886653 22345677899999999999996411                    0011


Q ss_pred             CCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         204 ASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       204 ~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      .......++.+.+.+.+ ++||+.
T Consensus       224 ~~~~~~~~~i~~i~~~~-~ipvia  246 (311)
T 1ep3_A          224 AIKPVALKLIHQVAQDV-DIPIIG  246 (311)
T ss_dssp             GGHHHHHHHHHHHHTTC-SSCEEE
T ss_pred             cchHHHHHHHHHHHHhc-CCCEEE
Confidence            01112357888898888 899874

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=85.70  E-value=4.8  Score=35.55  Aligned_cols=65  Identities=12%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             CceEEEec----CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHH---HHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQI----GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRD---VGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGV----g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~---VaeatpdLPIiLYN~P  231 (239)
                      ++.||+.-    ...+.++.+++.+.+++.|||-+=+....   . +.++..+-++.   +.+..++.|+|.|+.=
T Consensus       159 ~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~GaDIvKia~~a---~-s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG  230 (276)
T 3o1n_A          159 NVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMP---Q-TKADVLTLLTATVEMQERYADRPIITMSMS  230 (276)
T ss_dssp             TCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECC---S-SHHHHHHHHHHHHHHHHHTCCSCCEEEECS
T ss_pred             CCEEEEEeecCCCCcCHHHHHHHHHHHHHcCCCEEEEEecC---C-ChHHHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence            67888853    24567899999999999999987665322   2 55555555444   4443247999999874

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=85.70  E-value=3.3  Score=38.77  Aligned_cols=93  Identities=11%  Similarity=0.003  Sum_probs=55.7

Q ss_pred             HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      +.+.++.|...+ +....|.     .+...++++.+.+...  ++||++|-. .+.++    ++.+.++|+|++.+..-.
T Consensus       242 a~~l~~aGvd~v~i~~~~G~-----~~~~~e~i~~i~~~~p--~~pvi~g~~-~t~e~----a~~l~~~G~d~I~v~~~~  309 (494)
T 1vrd_A          242 VEKLVKAGVDVIVIDTAHGH-----SRRVIETLEMIKADYP--DLPVVAGNV-ATPEG----TEALIKAGADAVKVGVGP  309 (494)
T ss_dssp             HHHHHHTTCSEEEECCSCCS-----SHHHHHHHHHHHHHCT--TSCEEEEEE-CSHHH----HHHHHHTTCSEEEECSSC
T ss_pred             HHHHHHhCCCEEEEEecCCc-----hHHHHHHHHHHHHHCC--CceEEeCCc-CCHHH----HHHHHHcCCCEEEEcCCC
Confidence            344456666554 4344442     2566778888888774  489988633 34444    477788999999994311


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         200 ----------FFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       200 ----------y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                                .+.. .+-..+.......... ++||+.
T Consensus       310 G~~~~~~~~~~~g~-p~~~~l~~v~~~~~~~-~ipvia  345 (494)
T 1vrd_A          310 GSICTTRVVAGVGV-PQLTAVMECSEVARKY-DVPIIA  345 (494)
T ss_dssp             STTCHHHHHHCCCC-CHHHHHHHHHHHHHTT-TCCEEE
T ss_pred             CccccccccCCCCc-cHHHHHHHHHHHHhhc-CCCEEE
Confidence                      0112 3444445555555556 788875

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=85.68  E-value=7.3  Score=32.31  Aligned_cols=79  Identities=8%  Similarity=-0.061  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhcCCCc-eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602         146 AERKLNLEAWMTEAKTHGF-TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP  224 (239)
Q Consensus       146 eER~~li~~vve~~~G~rv-pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP  224 (239)
                      .=...+++-+.+.+...+. .+++.....+.....+..+.+.+.++|++++.|...      ......++.+.+ . ++|
T Consensus        15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~------~~~~~~~~~~~~-~-~iP   86 (309)
T 2fvy_A           15 NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP------AAAGTVIEKARG-Q-NVP   86 (309)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG------GGHHHHHHHHHT-T-TCC
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc------chhHHHHHHHHH-C-CCc
Confidence            3344566666655554344 677766667788888888888889999999986432      112234445544 4 799


Q ss_pred             EEEEeCCC
Q psy9602         225 LFYYHIPM  232 (239)
Q Consensus       225 IiLYN~P~  232 (239)
                      ++++|.+.
T Consensus        87 vV~~~~~~   94 (309)
T 2fvy_A           87 VVFFNKEP   94 (309)
T ss_dssp             EEEESSCC
T ss_pred             EEEecCCC
Confidence            99999863

>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15

Probab=85.51  E-value=4.3  Score=34.33  Aligned_cols=66  Identities=6%  Similarity=-0.092  Sum_probs=42.8

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHH-hCCCCEEEECCCCC-CCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAE-SLNVHAVLCLPELF-FTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~-~aGAdaVlV~PP~y-~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +...++.+.....+++++.++.+. +.|+.+|.+.+.+. +.. +++.+...|+.+.+ . ++||+++--.
T Consensus        90 r~~~~~~~p~~~~~~~~~el~~~~~~~g~~gi~~~~~~~~~~~-~~~~~~~~~~~a~~-~-~lpv~iH~~~  157 (307)
T 2f6k_A           90 QLGYLASLPIPYELDAVKTVQQALDQDGALGVTVPTNSRGLYF-GSPVLERVYQELDA-R-QAIVALHPNE  157 (307)
T ss_dssp             TEEEEECCCTTCHHHHHHHHHHHHHTSCCSEEEEESEETTEET-TCGGGHHHHHHHHT-T-TCEEEEECCC
T ss_pred             ceeEEEeCCCCCHHHHHHHHHHHHhccCCcEEEEeccCCCCCC-CcHhHHHHHHHHHH-c-CCeEEECCCC
Confidence            443333333355678888887776 58999997766432 223 55667777776655 5 8999998653

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=85.48  E-value=2.3  Score=37.81  Aligned_cols=63  Identities=17%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             CceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECC------CCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         163 GFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLP------ELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       163 rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~P------P~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +.-||+|.++. |.+.++++++.++++|++++-...      |+.|+... ++-+..++++++.. ++|++-
T Consensus        38 ~~~vIAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g-~~gl~~l~~~~~~~-Gl~~~t  107 (276)
T 1vs1_A           38 SKAVIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLG-LEGLKLLRRAGDEA-GLPVVT  107 (276)
T ss_dssp             BCEEEEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCT-HHHHHHHHHHHHHH-TCCEEE
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCC-HHHHHHHHHHHHHc-CCcEEE
Confidence            46788888754 889999999999999999976542      33233313 45567777888888 899873

>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}

Probab=85.37  E-value=3.4  Score=35.89  Aligned_cols=66  Identities=11%  Similarity=0.037  Sum_probs=46.9

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHH-hCCCCEEEECCCCC-CCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAE-SLNVHAVLCLPELF-FTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~-~aGAdaVlV~PP~y-~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      ++.-++++--...+++++.++.+. +.|+.+|.+.+-+. +.. +++.+...|+.+.+.  ++||+++-..
T Consensus       110 r~~~~~~l~~~~~~~a~~el~~~~~~~g~~Gv~l~~~~~~~~l-~d~~~~~~~~~~~e~--~lpv~iH~~~  177 (336)
T 2wm1_A          110 RFVGLGTLPMQAPELAVKEMERCVKELGFPGVQIGTHVNEWDL-NAQELFPVYAAAERL--KCSLFVHPWD  177 (336)
T ss_dssp             TEEEEECCCTTSHHHHHHHHHHHHHTSCCSEEEEESEETTEET-TCGGGHHHHHHHHHH--TCEEEEECCS
T ss_pred             ceeEEEeCCCcCHHHHHHHHHHHHHccCCeEEEECCcCCCCCC-CCccHHHHHHHHHHc--CCEEEECCCC
Confidence            454455566666678888888877 67999998765321 122 567788888888776  8999998653

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=85.31  E-value=1.6  Score=37.98  Aligned_cols=48  Identities=10%  Similarity=0.222  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEECCCCC---CCCCCHHHHHHHHHHHHhh
Q psy9602         171 GGTCFQEVVELAKHAESLNVHAVLCLPELF---FTPASVEDLVDYLRDVGEA  219 (239)
Q Consensus       171 g~~St~eAIelar~A~~aGAdaVlV~PP~y---~~~~s~e~iv~yf~~Vaea  219 (239)
                      |..+.++++++++.|.+.|.+.+.++|-+.   +.. +.+.+.++|+.+.+.
T Consensus        15 G~~~~~~sl~~~~~a~~~G~~~i~~T~H~~~~~~~~-~~~~i~~~~~~l~~~   65 (262)
T 3qy7_A           15 GAGDSADSIEMARAAVRQGIRTIIATPHHNNGVYKN-EPAAVREAADQLNKR   65 (262)
T ss_dssp             SCSSHHHHHHHHHHHHHTTCCEEECCCBSEETTEEC-CHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHHHHHHHHHHHH
Confidence            567899999999999999999999987653   333 788999998888765

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=85.07  E-value=3.4  Score=38.31  Aligned_cols=81  Identities=11%  Similarity=0.131  Sum_probs=55.1

Q ss_pred             CHHHHH----HHHHHHHHHhcCCCceEEEecCCC----------CHHHHHHHHHHHHhCC------CCEEEECCCCCCC-
Q psy9602         144 TTAERK----LNLEAWMTEAKTHGFTVMVQIGGT----------CFQEVVELAKHAESLN------VHAVLCLPELFFT-  202 (239)
Q Consensus       144 T~eER~----~li~~vve~~~G~rvpVIaGVg~~----------St~eAIelar~A~~aG------AdaVlV~PP~y~~-  202 (239)
                      |.+.|.    ++++.+.+.++. . ||.+=++..          +.++++++++.+++.|      +|.+-+..+.+.. 
T Consensus       216 slenR~rf~~Eiv~aVr~avg~-~-~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~  293 (402)
T 2hsa_B          216 SLANRCKFITQVVQAVVSAIGA-D-RVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAY  293 (402)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCG-G-GEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTT
T ss_pred             ChhhhhHHHHHHHHHHHHHhCC-C-cEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccc
Confidence            456674    555556666653 3 777755432          4578999999999999      9999997664321 


Q ss_pred             ---CC---CHH-HHHHHHHHHHhhCCCCcEEE
Q psy9602         203 ---PA---SVE-DLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       203 ---~~---s~e-~iv~yf~~VaeatpdLPIiL  227 (239)
                         +.   +.. .-.++.+.|.+++ ++|||.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~vk~~~-~iPvi~  324 (402)
T 2hsa_B          294 GQTEAGRLGSEEEEARLMRTLRNAY-QGTFIC  324 (402)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHHHHC-SSCEEE
T ss_pred             cCCccccccCCcchHHHHHHHHHHC-CCCEEE
Confidence               10   112 3467788888898 899885

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=85.07  E-value=2.2  Score=35.77  Aligned_cols=58  Identities=17%  Similarity=0.196  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL  213 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf  213 (239)
                      .++++.+.+.+   ++|||++-+-.+.+++.++.    +.|||++++..-.+..+.+.+++.++.
T Consensus       185 ~~~i~~l~~~~---~ipvia~GGI~~~~d~~~~~----~~Gadgv~vgsal~~~~~~~~~~~~~l  242 (252)
T 1ka9_F          185 LRLTRMVAEAV---GVPVIASGGAGRMEHFLEAF----QAGAEAALAASVFHFGEIPIPKLKRYL  242 (252)
T ss_dssp             HHHHHHHHHHC---SSCEEEESCCCSHHHHHHHH----HTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHH----HCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            55666666665   58999976666666665543    479999999976665544667777764

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=85.02  E-value=2.1  Score=39.52  Aligned_cols=65  Identities=12%  Similarity=0.114  Sum_probs=44.8

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC---CCCC---CHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF---FTPA---SVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y---~~~~---s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      +.++|+.++.....+  +..+.++.+|||++.+--.+.   ..|.   +.+...+..+.|.+.+ ++||++=..
T Consensus       144 ~~~~ianig~~~~~e--~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~-~~PVivK~v  214 (365)
T 3sr7_A          144 HLLLATNIGLDKPYQ--AGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL-QLPFILKEV  214 (365)
T ss_dssp             -CCEEEEEETTSCHH--HHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred             CCcEEEEeCCCCCHH--HHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhh-CCCEEEEEC
Confidence            579999888765443  445566678999998764331   1110   3456778899999998 899999864

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=85.01  E-value=4.4  Score=36.27  Aligned_cols=74  Identities=9%  Similarity=0.024  Sum_probs=60.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecC--C--CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIG--G--TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDV  216 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg--~--~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~V  216 (239)
                      ..+|.+|-...++.++..++  +.+|++-..  +  .|.+++++.+....++||++|-+--        .+++.+-.+.+
T Consensus        58 ~~vTldemi~h~~aV~r~~~--~~~vvaD~pfgsy~~s~~~a~~na~rl~kaGa~aVklEd--------g~e~~~~I~al  127 (275)
T 1o66_A           58 LPVSLRDMCYHTECVARGAK--NAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEG--------GVWMAETTEFL  127 (275)
T ss_dssp             TTCCHHHHHHHHHHHHHHCS--SSEEEEECCTTSSSSCHHHHHHHHHHHHHTTCSEEEEEC--------SGGGHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhCC--CCeEEEECCCCCccCCHHHHHHHHHHHHHcCCcEEEECC--------cHHHHHHHHHH
Confidence            46899999999999998875  457777443  3  4799999999999999999999873        35678888888


Q ss_pred             HhhCCCCcEE
Q psy9602         217 GEAAPATPLF  226 (239)
Q Consensus       217 aeatpdLPIi  226 (239)
                      .++  ++|++
T Consensus       128 ~~a--gIpV~  135 (275)
T 1o66_A          128 QMR--GIPVC  135 (275)
T ss_dssp             HHT--TCCEE
T ss_pred             HHc--CCCeE
Confidence            886  69988

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=84.98  E-value=2.9  Score=37.57  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEecC--CC---------------CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQIG--GT---------------CFQEVVELAKHAESLNVHAVLCLPELFFTPASVED  208 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGVg--~~---------------St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~  208 (239)
                      +|..+.++.+++.    ++||+.++|  ..               ..+++++.++..+++||+++++--.    +   .+
T Consensus       136 ~e~~~~I~al~~a----gIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----p---~~  204 (281)
T 1oy0_A          136 ERVAEQIACLTAA----GIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV----P---AE  204 (281)
T ss_dssp             GGGHHHHHHHHHH----TCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEESC----C---HH
T ss_pred             HHHHHHHHHHHHC----CCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEecC----C---HH
Confidence            3666777777664    589884332  22               2478999999999999999998642    2   22


Q ss_pred             HHHHHHHHHhhCCCCcEEEEeC
Q psy9602         209 LVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       209 iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      +   .+.|.++. ++|+|-.-.
T Consensus       205 ~---a~~it~~l-~iP~igIGa  222 (281)
T 1oy0_A          205 L---ATQITGKL-TIPTVGIGA  222 (281)
T ss_dssp             H---HHHHHHHC-SSCEEEESS
T ss_pred             H---HHHHHHhC-CCCEEEeCC
Confidence            2   56889999 799987654

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=84.96  E-value=11  Score=34.44  Aligned_cols=90  Identities=12%  Similarity=0.024  Sum_probs=52.2

Q ss_pred             hhhcCCCCEEEe-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-CCC
Q psy9602         123 LRMAPIIDQMVN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP-ELF  200 (239)
Q Consensus       123 ~~~~gg~glvV~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P-P~y  200 (239)
                      ..++.+..++++ ...|.     .+...+.++.+.+..   ++|||+|... +    .+.++.+.++|||+|.+.- |-.
T Consensus       112 ~l~eaGad~I~ld~a~G~-----~~~~~~~i~~i~~~~---~~~Vivg~v~-t----~e~A~~l~~aGaD~I~VG~~~Gs  178 (361)
T 3khj_A          112 LLVEAGVDVIVLDSAHGH-----SLNIIRTLKEIKSKM---NIDVIVGNVV-T----EEATKELIENGADGIKVGIGPGS  178 (361)
T ss_dssp             HHHHTTCSEEEECCSCCS-----BHHHHHHHHHHHHHC---CCEEEEEEEC-S----HHHHHHHHHTTCSEEEECSSCCT
T ss_pred             HHHHcCcCeEEEeCCCCC-----cHHHHHHHHHHHHhc---CCcEEEccCC-C----HHHHHHHHHcCcCEEEEecCCCc
Confidence            345666666544 33332     245566777777765   4799984332 2    4567888899999999941 211


Q ss_pred             ---------CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         201 ---------FTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       201 ---------~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                               +.. .+-..+.....++... ++|||.
T Consensus       179 ~~~tr~~~g~g~-p~~~~i~~v~~~~~~~-~iPVIA  212 (361)
T 3khj_A          179 ICTTRIVAGVGV-PQITAIEKCSSVASKF-GIPIIA  212 (361)
T ss_dssp             TCCHHHHTCBCC-CHHHHHHHHHHHHHHH-TCCEEE
T ss_pred             CCCcccccCCCC-CcHHHHHHHHHHHhhc-CCeEEE
Confidence                     111 3333444444445556 789874

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=84.88  E-value=8.4  Score=31.92  Aligned_cols=76  Identities=12%  Similarity=0.083  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++.+.+.+...+..+++.....+.+...+..+...+.++|++++.|... .     .+...++.+.+ . ++|+++
T Consensus        16 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~-----~~~~~~~~~~~-~-~iPvV~   87 (283)
T 2ioy_A           16 FVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDS-D-----AVVTAIKEANS-K-NIPVIT   87 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSST-T-----TTHHHHHHHHH-T-TCCEEE
T ss_pred             HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCch-h-----hhHHHHHHHHH-C-CCeEEE
Confidence            33444444433322135666666667777778888888889999999986431 1     12223445544 4 799999


Q ss_pred             EeCC
Q psy9602         228 YHIP  231 (239)
Q Consensus       228 YN~P  231 (239)
                      +|.+
T Consensus        88 ~~~~   91 (283)
T 2ioy_A           88 IDRS   91 (283)
T ss_dssp             ESSC
T ss_pred             ecCC
Confidence            9875

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=84.72  E-value=0.8  Score=42.24  Aligned_cols=88  Identities=11%  Similarity=0.111  Sum_probs=55.9

Q ss_pred             cCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-
Q psy9602         126 APIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-  204 (239)
Q Consensus       126 ~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-  204 (239)
                      .|.++++|.|+.|-...-. .--.+++..+++.+.+ ++|||+.=+=.+-.++++.    ..+|||+|++--|+.|... 
T Consensus       237 ~GaD~I~vsn~GG~~~d~~-~~~~~~L~~i~~av~~-~ipVia~GGI~~g~Dv~ka----LalGA~aV~iGr~~l~~l~~  310 (352)
T 3sgz_A          237 HNVQGIVVSNHGGRQLDEV-SASIDALREVVAAVKG-KIEVYMDGGVRTGTDVLKA----LALGARCIFLGRPILWGLAC  310 (352)
T ss_dssp             TTCSEEEECCGGGTSSCSS-CCHHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHH----HHTTCSEEEESHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCccCCC-ccHHHHHHHHHHHhCC-CCeEEEECCCCCHHHHHHH----HHcCCCEEEECHHHHHHHHh
Confidence            3455677878777422111 1124566666677777 8999986555666666654    3479999999999876431 


Q ss_pred             -CHHHHHHHHHHHHhh
Q psy9602         205 -SVEDLVDYLRDVGEA  219 (239)
Q Consensus       205 -s~e~iv~yf~~Vaea  219 (239)
                       .++.+.++++.+.+.
T Consensus       311 ~G~~gv~~~l~~l~~e  326 (352)
T 3sgz_A          311 KGEDGVKEVLDILTAE  326 (352)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHH
Confidence             355566666655543

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=84.63  E-value=2.2  Score=39.27  Aligned_cols=63  Identities=17%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             CceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEEC------CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         163 GFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCL------PELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       163 rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~------PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ++-||+|.++ .|.+.++++++.++++|++++-..      .||.|+... ++-+..++++++.. ++|++-
T Consensus       106 ~~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg-~egl~~l~~~~~e~-Gl~~~t  175 (350)
T 1vr6_A          106 YFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLG-EKGLEYLREAADKY-GMYVVT  175 (350)
T ss_dssp             EEEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCT-HHHHHHHHHHHHHH-TCEEEE
T ss_pred             CeEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCC-HHHHHHHHHHHHHc-CCcEEE
Confidence            4568888764 489999999999999999987554      233344323 45567777888888 899874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=84.61  E-value=8  Score=39.66  Aligned_cols=84  Identities=18%  Similarity=0.079  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEECC--CCCCC---------CCCHHHHHHH
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLCLP--ELFFT---------PASVEDLVDY  212 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV~P--P~y~~---------~~s~e~iv~y  212 (239)
                      .+...+-++.+.+...  +.|+++++ .+.+.++..+.++.+++.|+|++.+--  |....         . +.+.+.+.
T Consensus       618 ~~~~~~~i~~~~~~~~--~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~-~~~~~~~i  694 (1025)
T 1gte_A          618 AAYWCQSVTELKADFP--DNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQ-DPELVRNI  694 (1025)
T ss_dssp             HHHHHHHHHHHHHHCT--TSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGG-CHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC--CCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCccccccc-CHHHHHHH
Confidence            4444444444444432  46999988 467899999999999999999999953  33211         2 56788899


Q ss_pred             HHHHHhhCCCCcEEEEeCCC
Q psy9602         213 LRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       213 f~~VaeatpdLPIiLYN~P~  232 (239)
                      ++.|.+++ ++||++=-.|.
T Consensus       695 v~~v~~~~-~~Pv~vK~~~~  713 (1025)
T 1gte_A          695 CRWVRQAV-QIPFFAKLTPN  713 (1025)
T ss_dssp             HHHHHHHC-SSCEEEEECSC
T ss_pred             HHHHHHhh-CCceEEEeCCC
Confidence            99999998 89999866554

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=84.56  E-value=3.3  Score=37.14  Aligned_cols=84  Identities=11%  Similarity=0.053  Sum_probs=59.3

Q ss_pred             HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC-CCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG-GTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg-~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      ++...+-|.+++-...++|.           ++.+++.+   ++||++-=| ..+.+++++.++.|.++||+++.+.--.
T Consensus       195 ariA~elGAD~VKt~~t~e~-----------~~~vv~~~---~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI  260 (295)
T 3glc_A          195 TRIAAEMGAQIIKTYYVEKG-----------FERIVAGC---PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNI  260 (295)
T ss_dssp             HHHHHHTTCSEEEEECCTTT-----------HHHHHHTC---SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHH
T ss_pred             HHHHHHhCCCEEEeCCCHHH-----------HHHHHHhC---CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHH
Confidence            34455677887755555432           34445443   589887222 2368999999999999999999999877


Q ss_pred             CCCCCCHHHHHHHHHHHHhh
Q psy9602         200 FFTPASVEDLVDYLRDVGEA  219 (239)
Q Consensus       200 y~~~~s~e~iv~yf~~Vaea  219 (239)
                      |..+ ++..+.+-+..+...
T Consensus       261 ~q~~-dp~~~~~al~~ivh~  279 (295)
T 3glc_A          261 FQSD-HPVAMMKAVQAVVHH  279 (295)
T ss_dssp             HTSS-SHHHHHHHHHHHHHH
T ss_pred             hcCc-CHHHHHHHHHHHHhC
Confidence            7777 888888877776543

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=84.48  E-value=12  Score=30.83  Aligned_cols=76  Identities=12%  Similarity=0.077  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++-+.+.+...+..+++.....+.+...+..+...+.++|++++.|+.. .     .+...++.+.+ . ++|++++
T Consensus        18 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~-----~~~~~~~~~~~-~-~iPvV~~   89 (290)
T 2fn9_A           18 VVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDA-D-----GSIANVKRAKE-A-GIPVFCV   89 (290)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCT-T-----TTHHHHHHHHH-T-TCCEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-H-----HHHHHHHHHHH-C-CCeEEEE
Confidence            3444444443332245666655666778888888888889999999986432 1     12223444444 4 7999999


Q ss_pred             eCCC
Q psy9602         229 HIPM  232 (239)
Q Consensus       229 N~P~  232 (239)
                      |.+.
T Consensus        90 ~~~~   93 (290)
T 2fn9_A           90 DRGI   93 (290)
T ss_dssp             SSCC
T ss_pred             ecCC
Confidence            8753

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=84.47  E-value=2.3  Score=38.50  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             CcCC-CHHHH----------HHHHHHHHHHhcCCCceEEE-ecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCH
Q psy9602         140 GVSM-TTAER----------KLNLEAWMTEAKTHGFTVMV-QIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASV  206 (239)
Q Consensus       140 ~~sL-T~eER----------~~li~~vve~~~G~rvpVIa-GVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~  206 (239)
                      ...| |.+|.          .++++.+.+..   ++||++ +=|+- +.+++.+..    ++|||+|||.--.+-.+ ++
T Consensus       167 l~g~~t~~el~~~a~~~~ad~elI~~Ike~~---~IPVV~IAnGGI~TpedA~~~l----e~GaDGVmVGrAI~~s~-DP  238 (291)
T 3o07_A          167 CQQLKSEDDIAKVAEEMRVPVSLLKDVLEKG---KLPVVNFAAGGVATPADAALLM----QLGCDGVFVGSGIFKSS-NP  238 (291)
T ss_dssp             HHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT---SCSSCEEBCSSCCSHHHHHHHH----HTTCSCEEECGGGGGSS-CH
T ss_pred             HHcCCCHHHhhhcccccCCCHHHHHHHHHcc---CCCEEEecCCCCCCHHHHHHHH----HhCCCEEEEchHHhCCC-CH
Confidence            4456 77763          25666666653   689874 45555 455554443    67999999998776666 78


Q ss_pred             HHHHHHHHHHHhhC
Q psy9602         207 EDLVDYLRDVGEAA  220 (239)
Q Consensus       207 e~iv~yf~~Vaeat  220 (239)
                      ..+...|.......
T Consensus       239 ~~~Akafv~Av~~~  252 (291)
T 3o07_A          239 VRLATAVVEATTHF  252 (291)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            88888887777665

>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}

Probab=84.39  E-value=11  Score=31.13  Aligned_cols=76  Identities=14%  Similarity=0.129  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHhcCCCceEE-EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVM-VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVI-aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      ...+++-+.+.+...+..++ ......+.....+.++...+.++|++++.|.      +.+.....++.+.+ . ++|++
T Consensus        19 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~------~~~~~~~~~~~~~~-~-~ipvV   90 (303)
T 3d02_A           19 FNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN------DANVLEPVFKKARD-A-GIVVL   90 (303)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS------CHHHHHHHHHHHHH-T-TCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC------ChHHHHHHHHHHHH-C-CCeEE
Confidence            34444444444333245665 3556677888888888888899999999863      23444555666655 4 79999


Q ss_pred             EEeCC
Q psy9602         227 YYHIP  231 (239)
Q Consensus       227 LYN~P  231 (239)
                      ++|.+
T Consensus        91 ~~~~~   95 (303)
T 3d02_A           91 TNESP   95 (303)
T ss_dssp             EESCT
T ss_pred             EEecC
Confidence            99876

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A

Probab=84.32  E-value=4.4  Score=33.71  Aligned_cols=59  Identities=3%  Similarity=-0.143  Sum_probs=42.1

Q ss_pred             ceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         164 FTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       164 vpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      ..+++.-+ .+.+...+..+.+.+.++|++++.|...      +.....++.+.+ . ++|++++|.+
T Consensus        33 ~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~------~~~~~~~~~~~~-~-~iPvV~~~~~   91 (306)
T 8abp_A           33 FEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDP------KLGSAIVAKARG-Y-DMKVIAVDDQ   91 (306)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCG------GGHHHHHHHHHH-T-TCEEEEESSC
T ss_pred             CEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCc------hhhHHHHHHHHH-C-CCcEEEeCCC
Confidence            45555434 5888889999999999999999997432      233444555555 4 7999999953

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=84.29  E-value=14  Score=33.40  Aligned_cols=113  Identities=18%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             hhHHhhhcCCCCEEEecccc---------CCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC----------------
Q psy9602         119 VGITLRMAPIIDQMVNGTTG---------EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT----------------  173 (239)
Q Consensus       119 ~~v~~~~~gg~glvV~GstG---------E~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~----------------  173 (239)
                      ..+..+-.+|.|+++.+.+.         -...|..+|...-++.+++.+......+++++.+.                
T Consensus        41 ~yy~~rA~gG~Gliite~~~V~~~g~~~~~~~gi~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~g~~~~apS~  120 (343)
T 3kru_A           41 VHYATRAIGGVGLIMQEATAVESRGRITDHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSP  120 (343)
T ss_dssp             HHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCCCTTSCCEESSS
T ss_pred             eeeehhhccceeeeeehhhhhhhcCccccccccccCHHHHHHHHHHHHHHhcCCceEeeehhhccCccCcchhhccCCCc
Confidence            34455566888987655431         12456778887777777776644345666654321                


Q ss_pred             -------------C-------HHHHHHHHHHHHhCCCCEEEEC-----------CCCCCCCC-----CH----HHHHHHH
Q psy9602         174 -------------C-------FQEVVELAKHAESLNVHAVLCL-----------PELFFTPA-----SV----EDLVDYL  213 (239)
Q Consensus       174 -------------S-------t~eAIelar~A~~aGAdaVlV~-----------PP~y~~~~-----s~----e~iv~yf  213 (239)
                                   +       +++-.+-|+.|+++|+|+|-|-           .|...+-.     +-    .-+.+-.
T Consensus       121 i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv  200 (343)
T 3kru_A          121 IKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVI  200 (343)
T ss_dssp             CCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHH
T ss_pred             CCCCccccCchhcCHHHHHHHHHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHH
Confidence                         0       3344556888899999999987           44432220     21    2346666


Q ss_pred             HHHHhhCC-CCcEEEEeCC
Q psy9602         214 RDVGEAAP-ATPLFYYHIP  231 (239)
Q Consensus       214 ~~Vaeatp-dLPIiLYN~P  231 (239)
                      ++|.+++| +.||.+=-.|
T Consensus       201 ~aVr~avg~d~pv~vRls~  219 (343)
T 3kru_A          201 DEVRKNWPENKPIFVRVSA  219 (343)
T ss_dssp             HHHHHTSCTTSCEEEEEEC
T ss_pred             HHHHhcCCccCCeEEEeec
Confidence            77777775 6799885444

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=84.20  E-value=2.2  Score=38.46  Aligned_cols=69  Identities=20%  Similarity=0.145  Sum_probs=51.2

Q ss_pred             HHHHHHHHhcCCCceEE-EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC--HHHHHHHHHHHHhhCCCCcEEE
Q psy9602         151 NLEAWMTEAKTHGFTVM-VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPAS--VEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       151 li~~vve~~~G~rvpVI-aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s--~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +.+...+. .  +.+++ +-=--...+++.+.++.+.+.|.|++||- ....   +  .+.+.+....|.+.+ ++||++
T Consensus        30 ~~~~l~~~-~--~~~~~liDPdK~~~~~~~~~~~~~~~sGtDai~VG-S~~v---t~~~~~~~~~v~~ik~~~-~lPvil  101 (286)
T 3vk5_A           30 VLARLREH-Q--PGPVHIIDPFKVPVTEAVEKAAELTRLGFAAVLLA-STDY---ESFESHMEPYVAAVKAAT-PLPVVL  101 (286)
T ss_dssp             HHHHHHHS-C--CEEEEEECTTTSCHHHHHHHHHHHHHTTCSCEEEE-CSCC---SSHHHHHHHHHHHHHHHC-SSCEEE
T ss_pred             HHHHHHhc-c--CCceEEECCCCCCcHHHHHHHHHHHhcCCCEEEEc-cCCC---CcchHHHHHHHHHHHHhC-CCCEEE
Confidence            44555555 2  22332 22234568888999999999999999999 4322   6  788999999999988 899999

>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*

Probab=84.07  E-value=3.9  Score=33.74  Aligned_cols=77  Identities=10%  Similarity=0.029  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++.+.+.+...+..+++..+..+.....+..+...+.++|++++.|+.. .     .+...++.+.+ . ++|+++
T Consensus        16 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~-----~~~~~~~~~~~-~-~iPvV~   87 (271)
T 2dri_A           16 FVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS-D-----AVGNAVKMANQ-A-NIPVIT   87 (271)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSST-T-----TTHHHHHHHHH-T-TCCEEE
T ss_pred             HHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-H-----HHHHHHHHHHH-C-CCcEEE
Confidence            34455444444332245666655666777777788888888999999976431 1     12223444544 4 799999


Q ss_pred             EeCCC
Q psy9602         228 YHIPM  232 (239)
Q Consensus       228 YN~P~  232 (239)
                      +|.+.
T Consensus        88 i~~~~   92 (271)
T 2dri_A           88 LDRQA   92 (271)
T ss_dssp             ESSCC
T ss_pred             ecCCC
Confidence            99753

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=84.00  E-value=3.4  Score=36.40  Aligned_cols=68  Identities=13%  Similarity=0.035  Sum_probs=48.9

Q ss_pred             CceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-----------------CHHHHHHHHHHHHhh-CCC
Q psy9602         163 GFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-----------------SVEDLVDYLRDVGEA-APA  222 (239)
Q Consensus       163 rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-----------------s~e~iv~yf~~Vaea-tpd  222 (239)
                      +..+|.  -.+..+.+.+++.++..++.|||.+-+--|+.-+..                 +-+.+++..+++.+. + +
T Consensus        17 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~-~   95 (267)
T 3vnd_A           17 KGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHP-D   95 (267)
T ss_dssp             CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-T
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-C
Confidence            445544  456778899999999999999999999988732211                 223456677777766 5 8


Q ss_pred             CcEEE--EeCC
Q psy9602         223 TPLFY--YHIP  231 (239)
Q Consensus       223 LPIiL--YN~P  231 (239)
                      +||++  |-+|
T Consensus        96 ~Pivlm~Y~np  106 (267)
T 3vnd_A           96 MPIGLLLYANL  106 (267)
T ss_dssp             CCEEEEECHHH
T ss_pred             CCEEEEecCcH
Confidence            99887  5555

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=83.95  E-value=4.1  Score=35.07  Aligned_cols=76  Identities=13%  Similarity=0.053  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHh--CCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES--LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~--aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      ..+++-+.+.+...++.+++.....+....++.++.+.+  .++|++++.|..   .    .....++.+.+ . ++|++
T Consensus        20 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~---~----~~~~~~~~~~~-~-giPvV   90 (350)
T 3h75_A           20 VSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ---Y----VAPQILRLSQG-S-GIKLF   90 (350)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS---S----HHHHHHHHHTT-S-CCEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch---h----hHHHHHHHHHh-C-CCcEE
Confidence            334444433332224667666777788888888888888  599999998621   1    12344455544 4 79999


Q ss_pred             EEeCCCC
Q psy9602         227 YYHIPMF  233 (239)
Q Consensus       227 LYN~P~~  233 (239)
                      ++|.+..
T Consensus        91 ~~~~~~~   97 (350)
T 3h75_A           91 IVNSPLT   97 (350)
T ss_dssp             EEESCCC
T ss_pred             EEcCCCC
Confidence            9998653

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=83.86  E-value=5.5  Score=33.44  Aligned_cols=75  Identities=12%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++-+.+.+...+..+++.....+.+...++.+...+.++|++++.|+..  .   +   ..++.+.+ . ++|+++
T Consensus        42 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~---~---~~~~~l~~-~-~iPvV~  111 (305)
T 3huu_A           42 NSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLK--D---D---PIEHLLNE-F-KVPYLI  111 (305)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBT--T---C---HHHHHHHH-T-TCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcC--C---c---HHHHHHHH-c-CCCEEE
Confidence            34444444444332246777777777777778888889999999999987542  1   1   23444444 4 799999


Q ss_pred             EeCCC
Q psy9602         228 YHIPM  232 (239)
Q Consensus       228 YN~P~  232 (239)
                      .|.+.
T Consensus       112 i~~~~  116 (305)
T 3huu_A          112 VGKSL  116 (305)
T ss_dssp             ESCCC
T ss_pred             ECCCC
Confidence            99864

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=83.77  E-value=6.5  Score=32.80  Aligned_cols=76  Identities=5%  Similarity=0.037  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      =..++++-+.+.+...+..+++.....+.+...+..+...+.++|++++.|+.   . + +..   ++.+.+ . ++|++
T Consensus        30 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~-~-~~~---~~~l~~-~-~iPvV   99 (289)
T 2fep_A           30 FYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGN---I-T-DEH---VAEFKR-S-PVPIV   99 (289)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC---C-C-HHH---HHHHHH-S-SSCEE
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---C-C-HHH---HHHHHh-c-CCCEE
Confidence            34445554444433324566666666677777888888888999999998753   2 3 222   344443 4 79999


Q ss_pred             EEeCCC
Q psy9602         227 YYHIPM  232 (239)
Q Consensus       227 LYN~P~  232 (239)
                      ++|.+.
T Consensus       100 ~~~~~~  105 (289)
T 2fep_A          100 LAASVE  105 (289)
T ss_dssp             EESCCC
T ss_pred             EEcccc
Confidence            998753

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=83.76  E-value=8  Score=35.37  Aligned_cols=105  Identities=12%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             HHhhhcCCCCE---EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec--------CCCC-------HHHHHHHH
Q psy9602         121 ITLRMAPIIDQ---MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI--------GGTC-------FQEVVELA  182 (239)
Q Consensus       121 v~~~~~gg~gl---vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV--------g~~S-------t~eAIela  182 (239)
                      ++..++-|.+.   +|+=..-+-..+. +++.+.+..+.+.+....+|+++=+        ...+       .+-.+.-+
T Consensus       116 ve~a~~~GADAVk~lv~~g~d~~~e~~-~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~  194 (332)
T 3iv3_A          116 IKRLKEAGADAVKFLLYYDVDGDPQVN-VQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAM  194 (332)
T ss_dssp             HHHHHHTTCSEEEEEEEECTTSCHHHH-HHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEEEcCCCchHHHH-HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHH
Confidence            56666655542   2332222221222 3566666666666554479988722        1222       33377788


Q ss_pred             HHH--HhCCCCEEEECCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         183 KHA--ESLNVHAVLCLPELFF-----------TPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       183 r~A--~~aGAdaVlV~PP~y~-----------~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +.+  .+.|+|.+=+--|.-.           -. ++++..++|+++.+++ ++|+++-
T Consensus       195 R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y-~~~ea~~~f~~~~~a~-~~P~v~l  251 (332)
T 3iv3_A          195 KVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVY-SKEEAAQAFREQEAST-DLPYIYL  251 (332)
T ss_dssp             HHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCB-CHHHHHHHHHHHHHTC-SSCEEEE
T ss_pred             HHHhhcCcCCcEEEEecCCChhhhcccccccccc-cHHHHHHHHHHHHhcC-CCCEEEE
Confidence            888  6779999999876521           11 7799999999999999 7998764

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=83.71  E-value=3.8  Score=36.01  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC-----------------CCHHHHHHHHHHHHhhCCCCcEEE--Ee
Q psy9602         169 QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP-----------------ASVEDLVDYLRDVGEAAPATPLFY--YH  229 (239)
Q Consensus       169 GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~-----------------~s~e~iv~yf~~VaeatpdLPIiL--YN  229 (239)
                      -.|..+.+.+++.++..++. +|++.|--|+.-..                 .+-+.+++..++|.+.. ++||++  |.
T Consensus        23 ~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~-~~Pii~m~y~  100 (271)
T 1ujp_A           23 TAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALT-EKPLFLMTYL  100 (271)
T ss_dssp             ETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-CSCEEEECCH
T ss_pred             cCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCEEEEecC
Confidence            45788999999999999999 99999998874210                 13355677888888885 899999  65


Q ss_pred             CCC
Q psy9602         230 IPM  232 (239)
Q Consensus       230 ~P~  232 (239)
                      +|.
T Consensus       101 n~v  103 (271)
T 1ujp_A          101 NPV  103 (271)
T ss_dssp             HHH
T ss_pred             cHH
Confidence            563

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=83.66  E-value=2.7  Score=38.55  Aligned_cols=73  Identities=11%  Similarity=-0.008  Sum_probs=50.1

Q ss_pred             CHHHHHH----HHHHHHHHhcCCCceEEEecCCC----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         144 TTAERKL----NLEAWMTEAKTHGFTVMVQIGGT----------CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       144 T~eER~~----li~~vve~~~G~rvpVIaGVg~~----------St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      |.+-|.+    +++.+.+.++. . ||.+=++..          +.++++++++..+++|+|.+-+..+..  . .    
T Consensus       198 slenR~rf~~eiv~aVr~~vg~-~-~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~--~-~----  268 (362)
T 4ab4_A          198 SLENRARLLLEVTDAAIEVWGA-Q-RVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREA--D-D----  268 (362)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCG-G-GEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCC--T-T----
T ss_pred             chhhHHHHHHHHHHHHHHhcCC-C-ceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCC--C-H----
Confidence            4566654    55555555654 4 887755543          256899999999999999999987651  1 1    


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                       .+.+.|.+++ ++|||.
T Consensus       269 -~~~~~ik~~~-~iPvi~  284 (362)
T 4ab4_A          269 -SIGPLIKEAF-GGPYIV  284 (362)
T ss_dssp             -CCHHHHHHHH-CSCEEE
T ss_pred             -HHHHHHHHHC-CCCEEE
Confidence             3556677777 688875

>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}

Probab=83.53  E-value=6.9  Score=33.35  Aligned_cols=77  Identities=8%  Similarity=-0.102  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCC--CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLN--VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL  225 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aG--AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI  225 (239)
                      ..++++-+.+.+...+..+++.....+.+...+..+...+.+  +|++++.|.      +.+.....++.+.+.  ++|+
T Consensus        20 ~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~------~~~~~~~~~~~~~~~--~iPv   91 (332)
T 2rjo_A           20 YTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN------DSADARVIVEACSKA--GAYV   91 (332)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS------SHHHHHHHHHHHHHH--TCEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC------CHHHHHHHHHHHHHC--CCeE
Confidence            344444444333221355666556677777788888888888  999999863      234444566666654  7999


Q ss_pred             EEEeCCC
Q psy9602         226 FYYHIPM  232 (239)
Q Consensus       226 iLYN~P~  232 (239)
                      +++|.+.
T Consensus        92 V~~~~~~   98 (332)
T 2rjo_A           92 TTIWNKP   98 (332)
T ss_dssp             EEESCCC
T ss_pred             EEECCCC
Confidence            9998753

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=83.42  E-value=4.3  Score=37.83  Aligned_cols=73  Identities=12%  Similarity=0.033  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEecCCCC-----------------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQIGGTC-----------------FQEVVELAKHAESLNVHAVLCLPELFFTPASVED  208 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGVg~~S-----------------t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~  208 (239)
                      +.-.++++.+.+.    ++|+-+||.+-|                 .+-|++.++.+++.|.+-+++....   . +...
T Consensus       120 ~~~~~vv~~ak~~----~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~---S-~v~~  191 (366)
T 3noy_A          120 EIVREIVEEAKRR----GVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKG---S-DVLQ  191 (366)
T ss_dssp             HHHHHHHHHHHHH----TCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC---S-SHHH
T ss_pred             hHHHHHHHHHHHc----CCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeec---C-ChHH
Confidence            3334455555443    789999976654                 3567788999999999988887543   2 5678


Q ss_pred             HHHHHHHHHhhCCCCcEEE
Q psy9602         209 LVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       209 iv~yf~~VaeatpdLPIiL  227 (239)
                      .+.-|+.+++.+ +.|+-|
T Consensus       192 ~i~ayr~la~~~-dyPLHl  209 (366)
T 3noy_A          192 NVRANLIFAERT-DVPLHI  209 (366)
T ss_dssp             HHHHHHHHHHHC-CCCEEE
T ss_pred             HHHHHHHHHhcc-CCCEEE
Confidence            899999999997 788754

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=83.42  E-value=2  Score=36.34  Aligned_cols=58  Identities=14%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL  213 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf  213 (239)
                      .++++.+.+.+   ++|||++-|-.+.+++.++.    ++|||++++..-.+..+.+.+++.+|+
T Consensus       189 ~~~i~~l~~~~---~ipvia~GGI~~~ed~~~~~----~~Gadgv~vgsal~~~~~~~~~~~~~l  246 (266)
T 2w6r_A          189 TEMIRFVRPLT---TLPIIASGGAGKMEHFLEAF----LAGADAALAASVFHFREIDMRELKEYL  246 (266)
T ss_dssp             HHHHHHHGGGC---CSCEEEESCCCSHHHHHHHH----HHTCSEEEESTTTC-------------
T ss_pred             HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHH----HcCCHHHHccHHHHcCCCCHHHHHHHH
Confidence            44666666554   58999987777778777765    369999999987765543444555543

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=83.41  E-value=2.8  Score=38.48  Aligned_cols=73  Identities=10%  Similarity=0.038  Sum_probs=50.7

Q ss_pred             CHHHHH----HHHHHHHHHhcCCCceEEEecCCC----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602         144 TTAERK----LNLEAWMTEAKTHGFTVMVQIGGT----------CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL  209 (239)
Q Consensus       144 T~eER~----~li~~vve~~~G~rvpVIaGVg~~----------St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i  209 (239)
                      |.+-|.    ++++.+.+.++. . ||.+=++..          +.++++++++..+++|+|.+-+..+.+ .  .    
T Consensus       206 slenR~rf~~evv~aVr~~vg~-~-~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~-~--~----  276 (361)
T 3gka_A          206 SIENRARLLLEVVDAAIDVWSA-A-RVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFG-G--D----  276 (361)
T ss_dssp             SHHHHSHHHHHHHHHHHHHHCG-G-GEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCS-T--T----
T ss_pred             ChhhcHHHHHHHHHHHHHHcCC-C-eEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCC-C--H----
Confidence            456664    555666666654 4 887755542          257899999999999999999987652 1  1    


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                       .+.+.|.+.+ ++|||.
T Consensus       277 -~~~~~ik~~~-~iPvi~  292 (361)
T 3gka_A          277 -AIGQQLKAAF-GGPFIV  292 (361)
T ss_dssp             -CCHHHHHHHH-CSCEEE
T ss_pred             -HHHHHHHHHc-CCCEEE
Confidence             3556677777 688875

>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}

Probab=83.23  E-value=2.5  Score=38.27  Aligned_cols=66  Identities=8%  Similarity=0.051  Sum_probs=47.6

Q ss_pred             CceEEEecCCCCHHHHHHHHHHH-HhCCCCEEEECCCCC-CCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHA-ESLNVHAVLCLPELF-FTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A-~~aGAdaVlV~PP~y-~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      |.--++.+.-...+.+++.++.+ .+.|+.++.+.+++. ... +++.+...|+.+.+.  ++||+++--+
T Consensus       128 Rf~g~a~v~~~~~~~a~~El~r~~~~~G~~Gv~l~~~~~~~~~-~d~~~~p~~~~~~e~--g~pV~iH~g~  195 (357)
T 3nur_A          128 RFVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGFL-DQDKYDIIFKTAENL--DVPIYLHPAP  195 (357)
T ss_dssp             TEEECBCCCTTSHHHHHHHHHHHHHTTCCCCEEEESCBTTBCT-TSGGGHHHHHHHHHH--TCCEEEECCC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHhhcCceEEEeCCCCCCCCC-CCccHHHHHHHHHhc--CCeEEEecCC
Confidence            43333344444567899999987 579999999986442 223 678899999998886  8999998543

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=83.10  E-value=4  Score=32.59  Aligned_cols=77  Identities=13%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             CCC-EEEec--cccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Q psy9602         128 IID-QMVNG--TTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA  204 (239)
Q Consensus       128 g~g-lvV~G--stGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~  204 (239)
                      +.+ +++.|  .+|.+..+.    .+.++.+....   ++|+|+.-+..+.++..+..    +.|+|++++....|..+.
T Consensus       143 ~~~~vli~~~~~~g~~~g~~----~~~i~~~~~~~---~~Pvia~~g~~~~~~~~~~~----~~G~~~~~vg~a~~~~~~  211 (237)
T 3cwo_X          143 GAGEILLTSIDRDGTKSGYD----TEMIRFVRPLT---TLPIIASGGAGKMEHFLEAF----LAGADAALAASVFHFREI  211 (237)
T ss_dssp             TCSEEEEEETTTTTCCSCCC----HHHHHHHGGGC---CSCEEEESCCCSHHHHHHHH----HHTCSEEEESHHHHTTSS
T ss_pred             CCCeEEEEecCCCCcccccc----HHHHHHHHHhc---CCCEEecCCCCCHHHHHHHH----HcCcHHHhhhHHHHcCCC
Confidence            344 66666  556655554    44555555443   57999887777777766654    469999999987766665


Q ss_pred             CHHHHHHHHHH
Q psy9602         205 SVEDLVDYLRD  215 (239)
Q Consensus       205 s~e~iv~yf~~  215 (239)
                      +.+++.++++.
T Consensus       212 ~~~~~~~~l~~  222 (237)
T 3cwo_X          212 DVRELKEYLKK  222 (237)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHH
Confidence            78888877653

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=82.70  E-value=8.8  Score=31.54  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++-+.+.+...+..+++.....+.+...+..+...+.++|++++.+...    + +.+.+.+   .+.. ++|++++
T Consensus        23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~----~-~~~~~~l---~~~~-~iPvV~~   93 (289)
T 1dbq_A           23 AEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY----P-EPLLAML---EEYR-HIPMVVM   93 (289)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCC----C-HHHHHHH---HHTT-TSCEEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccC----C-HHHHHHH---Hhcc-CCCEEEE
Confidence            3444444333322135666666667788888888888889999999987432    2 3344433   3334 7999999


Q ss_pred             eCCC
Q psy9602         229 HIPM  232 (239)
Q Consensus       229 N~P~  232 (239)
                      |.+.
T Consensus        94 ~~~~   97 (289)
T 1dbq_A           94 DWGE   97 (289)
T ss_dssp             ECSS
T ss_pred             ccCC
Confidence            8753

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=82.70  E-value=3.1  Score=33.94  Aligned_cols=87  Identities=13%  Similarity=0.001  Sum_probs=50.2

Q ss_pred             hcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC---
Q psy9602         125 MAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF---  200 (239)
Q Consensus       125 ~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y---  200 (239)
                      .+.|.+ +++.+..+      .+.-.++++.+.+.    .+++++.+....  +..+.++.+.+.|+|.+.+.|-+-   
T Consensus        74 ~~~Gad~v~v~~~~~------~~~~~~~~~~~~~~----g~~~~v~~~~~~--t~~~~~~~~~~~g~d~i~v~~g~~g~~  141 (211)
T 3f4w_A           74 FDAGADYVTVLGVTD------VLTIQSCIRAAKEA----GKQVVVDMICVD--DLPARVRLLEEAGADMLAVHTGTDQQA  141 (211)
T ss_dssp             HHTTCSEEEEETTSC------HHHHHHHHHHHHHH----TCEEEEECTTCS--SHHHHHHHHHHHTCCEEEEECCHHHHH
T ss_pred             HhcCCCEEEEeCCCC------hhHHHHHHHHHHHc----CCeEEEEecCCC--CHHHHHHHHHHcCCCEEEEcCCCcccc
Confidence            455555 44543332      23335666666554    357766543332  246778889999999987753211   


Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         201 FTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       201 ~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      +.+    ...++++.+.+..|++||++
T Consensus       142 ~~~----~~~~~i~~l~~~~~~~~i~~  164 (211)
T 3f4w_A          142 AGR----KPIDDLITMLKVRRKARIAV  164 (211)
T ss_dssp             TTC----CSHHHHHHHHHHCSSCEEEE
T ss_pred             cCC----CCHHHHHHHHHHcCCCcEEE
Confidence            111    13567777877765788865

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=82.69  E-value=11  Score=35.56  Aligned_cols=63  Identities=16%  Similarity=-0.005  Sum_probs=40.6

Q ss_pred             HhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         122 TLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       122 ~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      ...++.+..++++. ..|.     .+...++++.+.+...  .+||++|-.. +    .+.++.+.++|||++.+.
T Consensus       235 ~~l~~aG~d~I~id~a~g~-----~~~~~~~v~~i~~~~p--~~~Vi~g~v~-t----~e~a~~l~~aGaD~I~vg  298 (490)
T 4avf_A          235 AALVAAGVDVVVVDTAHGH-----SKGVIERVRWVKQTFP--DVQVIGGNIA-T----AEAAKALAEAGADAVKVG  298 (490)
T ss_dssp             HHHHHTTCSEEEEECSCCS-----BHHHHHHHHHHHHHCT--TSEEEEEEEC-S----HHHHHHHHHTTCSEEEEC
T ss_pred             HHHhhcccceEEecccCCc-----chhHHHHHHHHHHHCC--CceEEEeeeC-c----HHHHHHHHHcCCCEEEEC
Confidence            33456667665443 3332     2455567777777663  5899997322 2    356788999999999983

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=82.64  E-value=6.8  Score=33.48  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++-+.+.+...+..+++..+..+.+...+..+...+.++|++++.|+.   . +.+.    +..++... ++|+++
T Consensus        78 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~-~~~~----~~~~~~~~-~iPvV~  148 (338)
T 3dbi_A           78 FSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF---L-SVDE----IDDIIDAH-SQPIMV  148 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS---S-CHHH----HHHHHHHC-SSCEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC---C-ChHH----HHHHHHcC-CCCEEE
Confidence            3444444444443335677777777788888888898899999999998743   2 3333    33445556 799999


Q ss_pred             EeCCC
Q psy9602         228 YHIPM  232 (239)
Q Consensus       228 YN~P~  232 (239)
                      .|.+.
T Consensus       149 ~~~~~  153 (338)
T 3dbi_A          149 LNRRL  153 (338)
T ss_dssp             ESSCC
T ss_pred             EcCCC
Confidence            98753

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=82.59  E-value=9.8  Score=32.53  Aligned_cols=109  Identities=15%  Similarity=-0.003  Sum_probs=70.8

Q ss_pred             HHhhHHhhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602         117 LLVGITLRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC  195 (239)
Q Consensus       117 l~~~v~~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV  195 (239)
                      ....++..++.|.+ +-+.=..|..-+=..++-.+-+..+++.+.+..+|||+-.+-.+.++....++.|.++|||.|=.
T Consensus        73 k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKT  152 (220)
T 1ub3_A           73 KALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKT  152 (220)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred             HHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence            33456667777764 31222233222224466677777777777543589999888888999999999999999999988


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         196 LPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       196 ~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      ..-|.....+.+++..+-+.+  .. .+||..-
T Consensus       153 sTGf~~~gat~~dv~~m~~~v--g~-~v~Vkaa  182 (220)
T 1ub3_A          153 STGFGPRGASLEDVALLVRVA--QG-RAQVKAA  182 (220)
T ss_dssp             CCSSSSCCCCHHHHHHHHHHH--TT-SSEEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHhh--CC-CCeEEEE
Confidence            754432222677776665555  33 5777653

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=82.26  E-value=5.6  Score=34.11  Aligned_cols=95  Identities=12%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             EEEeccccCCc--CCCHHHHHHHHHHHHHHh-------------------cCCCceEEEecC--CCCHHHHHHHHHHHHh
Q psy9602         131 QMVNGTTGEGV--SMTTAERKLNLEAWMTEA-------------------KTHGFTVMVQIG--GTCFQEVVELAKHAES  187 (239)
Q Consensus       131 lvV~GstGE~~--sLT~eER~~li~~vve~~-------------------~G~rvpVIaGVg--~~St~eAIelar~A~~  187 (239)
                      ++.+-+..|+-  .++.++|.++++.+++..                   .+ .+.||+.--  ..+.++.+++.+.+++
T Consensus        61 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~~~i~~~~~-~~kvI~S~Hdf~~tp~el~~~~~~~~~  139 (231)
T 2ocz_A           61 IFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEMLD-FPNLILSYHNFEETPENLMEAFSEMTK  139 (231)
T ss_dssp             EEECCBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEEETTTTGGGGGGGTT-CSSEEEEEEESSCCCTTHHHHHHHHHH
T ss_pred             EEEEeecccCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCHHHHHHhhc-CCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence            44444444432  489999999999998763                   22 256776442  1223789999999999


Q ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHHH---hhCCCCcEEEEeC
Q psy9602         188 LNVHAVLCLPELFFTPASVEDLVDYLRDVG---EAAPATPLFYYHI  230 (239)
Q Consensus       188 aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va---eatpdLPIiLYN~  230 (239)
                      .|||-+=+....   . +.++..+-++...   ...++.|++.|+.
T Consensus       140 ~gaDivKia~~a---~-~~~D~l~ll~~~~~~~~~~~~~P~I~~~M  181 (231)
T 2ocz_A          140 LAPRVVKIAVMP---Q-SEQDVLDLMNYTRGFKTLNPEQEFATISM  181 (231)
T ss_dssp             TCCSEEEEEECC---S-SHHHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCCCEEEEEeec---C-CHHHHHHHHHHHHHHhhccCCCCEEEEEc
Confidence            999988666432   2 5555555554443   2234789999986

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=82.18  E-value=2.6  Score=37.32  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=47.5

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC---C-C---
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP---A-S---  205 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~---~-s---  205 (239)
                      ..|+||.-..++ ++-.++++.+.+.+   ++||++|.|=.+.+++    +.+.+.|||+++|-.-..-..   . +   
T Consensus       182 ~~GvTG~~~~~~-~~~~~~v~~vr~~~---~~Pv~vGfGIst~e~~----~~~~~~gADgvIVGSAiv~~i~~~~~~~~~  253 (271)
T 3nav_A          182 RAGVTGAETKAN-MPVHALLERLQQFD---APPALLGFGISEPAQV----KQAIEAGAAGAISGSAVVKIIETHLDNPAK  253 (271)
T ss_dssp             CC--------CC-HHHHHHHHHHHHTT---CCCEEECSSCCSHHHH----HHHHHTTCSEEEESHHHHHHHHHTTTCHHH
T ss_pred             ccCCCCcccCCc-hhHHHHHHHHHHhc---CCCEEEECCCCCHHHH----HHHHHcCCCEEEECHHHHHHHHhhccchHH
Confidence            468999987776 45677888887765   4799999988776655    445668999999975332100   0 1   


Q ss_pred             -HHHHHHHHHHHHhhC
Q psy9602         206 -VEDLVDYLRDVGEAA  220 (239)
Q Consensus       206 -~e~iv~yf~~Vaeat  220 (239)
                       .+.+.+|.+.+..++
T Consensus       254 ~~~~~~~~~~~l~~~~  269 (271)
T 3nav_A          254 QLTELANFTQAMKKAT  269 (271)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence             245667777776654

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}

Probab=82.08  E-value=15  Score=31.36  Aligned_cols=71  Identities=10%  Similarity=-0.075  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++++-+.+.+...+..+++.....+.+...+..+...+.++|++++.|+.   . ++ .   .++.+.+ . ++|++++
T Consensus        84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~---~-~~-~---~~~~l~~-~-~iPvV~i  153 (344)
T 3kjx_A           84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE---H-SE-A---ARAMLDA-A-GIPVVEI  153 (344)
T ss_dssp             HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC---C-CH-H---HHHHHHH-C-SSCEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC---C-CH-H---HHHHHHh-C-CCCEEEE
Confidence            455555555555445778887787888888888888899999999998643   2 22 2   3344444 4 7999999


Q ss_pred             e
Q psy9602         229 H  229 (239)
Q Consensus       229 N  229 (239)
                      +
T Consensus       154 ~  154 (344)
T 3kjx_A          154 M  154 (344)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=82.04  E-value=3.3  Score=37.61  Aligned_cols=81  Identities=10%  Similarity=0.059  Sum_probs=53.1

Q ss_pred             CHHHHHH----HHHHHHHHhcCCCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC---CCHHHH
Q psy9602         144 TTAERKL----NLEAWMTEAKTHGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTP---ASVEDL  209 (239)
Q Consensus       144 T~eER~~----li~~vve~~~G~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~---~s~e~i  209 (239)
                      |.+.|.+    +++.+.+.++. ++||.+=++       +.+.++++++++..+++ +|.+-+....+...   ..+..-
T Consensus       188 slenR~rf~~eiv~aVr~avg~-d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~  265 (343)
T 3kru_A          188 SIENRARFLIEVIDEVRKNWPE-NKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQ  265 (343)
T ss_dssp             SHHHHTHHHHHHHHHHHHTSCT-TSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTT
T ss_pred             chHhHHHHHHHHHHHHHhcCCc-cCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCcee
Confidence            5666754    55555555554 678887444       34689999999999999 99999953222110   011223


Q ss_pred             HHHHHHHHhhCCCCcEEE
Q psy9602         210 VDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       210 v~yf~~VaeatpdLPIiL  227 (239)
                      .++.+.|.+++ ++||+.
T Consensus       266 ~~~~~~ir~~~-~iPVi~  282 (343)
T 3kru_A          266 VKYAETIKKRC-NIKTSA  282 (343)
T ss_dssp             HHHHHHHHHHH-TCEEEE
T ss_pred             ehHHHHHHHhc-Ccccce
Confidence            56677788888 799886

>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}

Probab=81.99  E-value=13  Score=31.69  Aligned_cols=59  Identities=14%  Similarity=0.119  Sum_probs=43.4

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P  231 (239)
                      +..+++.....+.+...++.+...+.++|++++.|+..    ++    ..++.+.+ . ++|+++++.+
T Consensus        92 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~----~~----~~~~~l~~-~-~iPvV~~~~~  150 (339)
T 3h5o_A           92 GYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSH----AE----PFERILSQ-H-ALPVVYMMDL  150 (339)
T ss_dssp             TCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC----CT----THHHHHHH-T-TCCEEEEESC
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC----CH----HHHHHHhc-C-CCCEEEEeec
Confidence            46777777888888888999999999999999987542    11    12333433 4 7999999764

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=81.82  E-value=8.5  Score=31.86  Aligned_cols=72  Identities=13%  Similarity=0.073  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCce-EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602         145 TAERKLNLEAWMTEAKTHGFT-VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT  223 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvp-VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL  223 (239)
                      ..=..++++-+.+.+...+.. +++.....+.....+..+...+.++|++++.|+...             .+ ... ++
T Consensus        22 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------------~~-~~~-~i   86 (277)
T 3hs3_A           22 NRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAFTIP-------------PN-FHL-NT   86 (277)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCCCC-------------TT-CCC-SS
T ss_pred             ChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcchHHH-------------HH-HhC-CC
Confidence            344455555555554433567 777778888888889999999999999999983221             12 344 79


Q ss_pred             cEEEEeCC
Q psy9602         224 PLFYYHIP  231 (239)
Q Consensus       224 PIiLYN~P  231 (239)
                      |++++|.+
T Consensus        87 PvV~~~~~   94 (277)
T 3hs3_A           87 PLVMYDSA   94 (277)
T ss_dssp             CEEEESCC
T ss_pred             CEEEEccc
Confidence            99999976

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=81.81  E-value=8.5  Score=31.72  Aligned_cols=55  Identities=11%  Similarity=0.167  Sum_probs=41.1

Q ss_pred             cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         170 IGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       170 Vg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      ....+.+...+..+.+.+.++|++++.|+..      +....+++.+.+.  ++|++++|.+.
T Consensus        50 ~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~------~~~~~~~~~~~~~--~iPvV~~~~~~  104 (304)
T 3gbv_A           50 YDPYDYNSFVATSQAVIEEQPDGVMFAPTVP------QYTKGFTDALNEL--GIPYIYIDSQI  104 (304)
T ss_dssp             ECSSCHHHHHHHHHHHHTTCCSEEEECCSSG------GGTHHHHHHHHHH--TCCEEEESSCC
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEECCCCh------HHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            3456788888899999999999999997532      2234456666665  79999999754

>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A

Probab=81.74  E-value=7.5  Score=37.50  Aligned_cols=105  Identities=10%  Similarity=-0.029  Sum_probs=64.2

Q ss_pred             HHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHhCCC
Q psy9602         116 MLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       116 ~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~aGA  190 (239)
                      .++.-+.....||.+++=.= .-+.-.++..+||...+..+++    .++. +.-..++|++.+.++.++.+++|.++|+
T Consensus       193 ~~a~~~ye~~~GGlDfiKDDE~l~~qpf~p~~eR~~~v~eai~rA~~eTGe-~k~~~~NiTa~~~~eM~~Ra~~a~e~G~  271 (493)
T 1bwv_A          193 NYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGE-VKGHYLNVTAATMEEMYARANFAKELGS  271 (493)
T ss_dssp             HHHHHHHHHHHHTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHTS-CCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCCcccCccccCCCCCCcHHHHHHHHHHHHHHHHHhhCC-cceeeccCCCCCHHHHHHHHHHHHHhCC
Confidence            33333333445555554211 1234556788999865444433    4544 4556679999999999999999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .++|+-+-.  .. +   .+...+..++.. ++||.++
T Consensus       272 ~~~mvd~~~--G~-~---a~~~l~~~~r~~-~l~lh~H  302 (493)
T 1bwv_A          272 VIIMIDLVI--GY-T---AIQTMAKWARDN-DMILHLH  302 (493)
T ss_dssp             SEEEEEGGG--CH-H---HHHHHHHHHHHT-TCEEEEE
T ss_pred             CeEEEeccc--Ch-H---HHHHHHHHHhhc-CcEEEec
Confidence            999987422  22 1   222223333345 7887766

>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A

Probab=81.74  E-value=5.1  Score=35.69  Aligned_cols=78  Identities=5%  Similarity=0.018  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEecCCCC------------------------------HHHHHHHHHHHHhCCCCEEEE
Q psy9602         146 AERKLNLEAWMTEAKTHGFTVMVQIGGTC------------------------------FQEVVELAKHAESLNVHAVLC  195 (239)
Q Consensus       146 eER~~li~~vve~~~G~rvpVIaGVg~~S------------------------------t~eAIelar~A~~aGAdaVlV  195 (239)
                      ....+.++.+.+..++ ++|+|..+++.=                              ++..+++++...++|||++++
T Consensus       131 ~~v~eai~~l~~~l~~-~~pligf~g~P~Tla~~l~~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i  209 (348)
T 4ay7_A          131 PVVLEAIKIIREKVGP-DVPIVGGMEGPVTVASDLVSVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAI  209 (348)
T ss_dssp             HHHHHHHHHHHHHHCT-TSCEEEEEECHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHhCC-CeeEEEeccchHHHHHhcccchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCccee
Confidence            3456667777777877 889887776531                              344556777778899999999


Q ss_pred             CCCCCCCC-CCHHHH----HHHHHHHHhhCCCCc
Q psy9602         196 LPELFFTP-ASVEDL----VDYLRDVGEAAPATP  224 (239)
Q Consensus       196 ~PP~y~~~-~s~e~i----v~yf~~VaeatpdLP  224 (239)
                      ..+..... .+++..    ..|++.|.++..+.|
T Consensus       210 ~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~~  243 (348)
T 4ay7_A          210 ADPVASPDLMSPDSFRQFLKSRLQKFASSVNSVT  243 (348)
T ss_dssp             ECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred             eccccccccCCHHHHHHHhhHHHHHHHhhccCCc
Confidence            98764321 265654    456889999984434

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=81.48  E-value=11  Score=34.76  Aligned_cols=109  Identities=9%  Similarity=-0.023  Sum_probs=62.9

Q ss_pred             cceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHH
Q psy9602         100 AKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVV  179 (239)
Q Consensus       100 ~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAI  179 (239)
                      ...-++.-|+..-....|+..+  ...|  ++.++..     .+|.||..+.++.    ++   ..+.+.++.  ..+..
T Consensus        41 l~~Pii~ApM~~vte~~lA~A~--a~~G--g~gvi~~-----~~s~ee~~~~i~~----~~---~~~~~~~g~--~~~~~  102 (361)
T 3r2g_A           41 LNLPVISANMDTITESNMANFM--HSKG--AMGALHR-----FMTIEENIQEFKK----CK---GPVFVSVGC--TENEL  102 (361)
T ss_dssp             ESSCEEECCSTTTCSHHHHHHH--HHTT--CEEBCCS-----CSCHHHHHHHHHT----CC---SCCBEEECS--SHHHH
T ss_pred             cCCCEEECCCCCchHHHHHHHH--HHcC--CCEEEeC-----CCCHHHHHHHHhh----cc---eEEEEEcCC--CHHHH
Confidence            3444555555333334443331  1223  3444442     2788887765432    22   223333332  36788


Q ss_pred             HHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         180 ELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       180 elar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      ++++.+.++|+|.+.+-.++.+    .+.+.+..+.|.+..|++||+.=|.
T Consensus       103 e~~~~a~~aGvdvI~id~a~G~----~~~~~e~I~~ir~~~~~~~Vi~G~V  149 (361)
T 3r2g_A          103 QRAEALRDAGADFFCVDVAHAH----AKYVGKTLKSLRQLLGSRCIMAGNV  149 (361)
T ss_dssp             HHHHHHHHTTCCEEEEECSCCS----SHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHcCCCEEEEeCCCCC----cHhHHHHHHHHHHhcCCCeEEEcCc
Confidence            9999999999998887555532    2456667777777767899998554

>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}

Probab=81.47  E-value=12  Score=31.22  Aligned_cols=62  Identities=18%  Similarity=0.296  Sum_probs=42.3

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +..+++..+..+.....+..+...+.++|++++.|.....  . +..   ++.+.+ . ++|++++|.+.
T Consensus        32 g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~--~-~~~---~~~~~~-~-~iPvV~~~~~~   93 (306)
T 2vk2_A           32 GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG--W-EPV---LKEAKD-A-EIPVFLLDRSI   93 (306)
T ss_dssp             TCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS--C-HHH---HHHHHH-T-TCCEEEESSCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh--H-HHH---HHHHHH-C-CCCEEEecCCC
Confidence            3566666666777877888888888899999998744211  1 223   344444 4 79999998753

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=81.31  E-value=4  Score=34.98  Aligned_cols=76  Identities=16%  Similarity=0.035  Sum_probs=51.5

Q ss_pred             HHHHHHHhcCCCceEEEecCC----CCHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHhhCCC--Cc
Q psy9602         152 LEAWMTEAKTHGFTVMVQIGG----TCFQEVVELAKHAESLNVHAVLCLPELFF-TPASVEDLVDYLRDVGEAAPA--TP  224 (239)
Q Consensus       152 i~~vve~~~G~rvpVIaGVg~----~St~eAIelar~A~~aGAdaVlV~PP~y~-~~~s~e~iv~yf~~Vaeatpd--LP  224 (239)
                      ++.+.+...+.+++|...++.    .+++.-+..++.|.+.|||.|-+..++.. +..+.+.+.+-..+|.+++++  +|
T Consensus        43 v~~~~~~l~~~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lk  122 (220)
T 1ub3_A           43 VAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLK  122 (220)
T ss_dssp             HHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEE
T ss_pred             HHHHHHHhCCCCceEEEEecCCCCCCchHHHHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCce
Confidence            344444444434665544433    67888888999999999999988776643 112788899999999998732  45


Q ss_pred             EEE
Q psy9602         225 LFY  227 (239)
Q Consensus       225 IiL  227 (239)
                      +||
T Consensus       123 vIl  125 (220)
T 1ub3_A          123 VIL  125 (220)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            444

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=81.21  E-value=3.5  Score=35.76  Aligned_cols=62  Identities=26%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             CceEEEecCCCCH-------HHHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602         163 GFTVMVQIGGTCF-------QEVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI  230 (239)
Q Consensus       163 rvpVIaGVg~~St-------~eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~  230 (239)
                      +.+||+-+-..|.       .+..++++.+++.||+++.+.. +.||.. +    .++++.+.+++ ++||+.-++
T Consensus        45 ~~~~IaE~k~aSPskg~i~~~~p~~~A~~~~~~GA~~isvlt~~~~f~G-~----~~~l~~i~~~v-~lPvl~kdf  114 (254)
T 1vc4_A           45 GLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVLTEPHRFGG-S----LLDLKRVREAV-DLPLLRKDF  114 (254)
T ss_dssp             SCEEEEEECSCCTTTCCCCSCCHHHHHHHHHHTTCSEEEEECCCSSSCC-C----HHHHHHHHHHC-CSCEEEESC
T ss_pred             CCcEEeeecCCCcCCCcCCCCCHHHHHHHHHHcCCCEEEEecchhhhcc-C----HHHHHHHHHhc-CCCEEECCc
Confidence            3678886652222       3568999999999999999964 666665 3    34778888898 899987664

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=81.11  E-value=17  Score=32.64  Aligned_cols=97  Identities=12%  Similarity=0.081  Sum_probs=67.4

Q ss_pred             CCCCEEEec------cccC--CcCCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602         127 PIIDQMVNG------TTGE--GVSMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCL  196 (239)
Q Consensus       127 gg~glvV~G------stGE--~~sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~  196 (239)
                      |...+++.|      +.|-  ...+|.+|....++.++..+   ++||++=.  |..+..++.+.++..+++||++|-+-
T Consensus        42 Gf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~---~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iE  118 (298)
T 3eoo_A           42 GFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT---NLPLLVDIDTGWGGAFNIARTIRSFIKAGVGAVHLE  118 (298)
T ss_dssp             TCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC---CSCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc---CCeEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEC
Confidence            445566655      2232  23579999999999998876   57999932  22378899999999999999999875


Q ss_pred             CCCC--------CCCC-CHHHHHHHHHHHHhhCCCCcEE
Q psy9602         197 PELF--------FTPA-SVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       197 PP~y--------~~~~-s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      --.+        -+.. +.++.++..++..++..+.+++
T Consensus       119 Dq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~  157 (298)
T 3eoo_A          119 DQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFV  157 (298)
T ss_dssp             CBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSE
T ss_pred             CCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeE
Confidence            4221        1112 7888888888887775233433

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=80.98  E-value=6.2  Score=38.77  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=68.3

Q ss_pred             hHHhhhcCCCCEEEeccc-----cCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC----------------
Q psy9602         120 GITLRMAPIIDQMVNGTT-----GEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT----------------  173 (239)
Q Consensus       120 ~v~~~~~gg~glvV~Gst-----GE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~----------------  173 (239)
                      .+..+-.+|.|+++.+.+     |-.     ..|..++..+-++.+.+.+.....++++++.+.                
T Consensus        44 ~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~p  123 (729)
T 1o94_A           44 HRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGP  123 (729)
T ss_dssp             HHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHHTTTCEEEEEEECCGGGSCCTTTCCCCEES
T ss_pred             HHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHHHHHhCCCeEEEEecCCCccccccccCCCCcCC
Confidence            344555788888765544     211     245557766666666665544357888888662                


Q ss_pred             -----------------------CHHHHHHHHHHHHhCCCCEEEECCCC-----------CCCCC-----CH----HHHH
Q psy9602         174 -----------------------CFQEVVELAKHAESLNVHAVLCLPEL-----------FFTPA-----SV----EDLV  210 (239)
Q Consensus       174 -----------------------St~eAIelar~A~~aGAdaVlV~PP~-----------y~~~~-----s~----e~iv  210 (239)
                                             ..++-.+-|+.|+++|+|+|-+.-.+           ..+-.     +-    .-+.
T Consensus       124 s~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~  203 (729)
T 1o94_A          124 SQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWL  203 (729)
T ss_dssp             SCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHH
T ss_pred             CcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHH
Confidence                                   03566678889999999999997644           22110     11    2355


Q ss_pred             HHHHHHHhhCC-CCcEEEEeCC
Q psy9602         211 DYLRDVGEAAP-ATPLFYYHIP  231 (239)
Q Consensus       211 ~yf~~Vaeatp-dLPIiLYN~P  231 (239)
                      +-.++|.++++ +.||.+==.|
T Consensus       204 eiv~avr~~vg~~~pv~vrls~  225 (729)
T 1o94_A          204 ETLEKVKHAVGSDCAIATRFGV  225 (729)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEEE
T ss_pred             HHHHHHHHHhCCCceEEEEEcc
Confidence            56666666664 6788774433

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}

Probab=80.59  E-value=12  Score=31.15  Aligned_cols=75  Identities=9%  Similarity=0.120  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++-+.+.+...+..+++.....+.....+..+...+.++|++++.|+..    +.+.   .++.+.+ . ++|+++
T Consensus        35 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~----~~~~---~~~~~~~-~-~iPvV~  105 (293)
T 2iks_A           35 YTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP----PEHP---FYQRWAN-D-PFPIVA  105 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSC----TTCH---HHHTTTT-S-SSCEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC----CcHH---HHHHHHh-C-CCCEEE
Confidence            34455554444433245666666666777778888888888999999987532    1122   2333433 4 799999


Q ss_pred             EeCC
Q psy9602         228 YHIP  231 (239)
Q Consensus       228 YN~P  231 (239)
                      +|.+
T Consensus       106 ~~~~  109 (293)
T 2iks_A          106 LDRA  109 (293)
T ss_dssp             EESC
T ss_pred             ECCc
Confidence            9875

>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1

Probab=80.59  E-value=3.1  Score=37.41  Aligned_cols=85  Identities=13%  Similarity=0.175  Sum_probs=56.6

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC--------CHHHHHHHHHHHHhCCCCEEEECC-----CCCCCCCCHH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT--------CFQEVVELAKHAESLNVHAVLCLP-----ELFFTPASVE  207 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~--------St~eAIelar~A~~aGAdaVlV~P-----P~y~~~~s~e  207 (239)
                      ..|+.++|.++|+.+.+     ...|+.-+|..        ++.+-|++++...++||+.||+-.     --.|.. ..+
T Consensus       134 i~l~~~~~~~lI~~a~~-----~f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEaRESG~~Gi~~~-~g~  207 (276)
T 1u83_A          134 LPMTNKEKAAYIADFSD-----EFLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARESGTGGICSS-SGD  207 (276)
T ss_dssp             SCCCHHHHHHHHHHHTT-----TSEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC----------------
T ss_pred             ccCCHHHHHHHHHHHHh-----hcEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEeeeccCCCCccCC-CCC
Confidence            45999999999996554     35677766654        448999999999999999999986     212222 222


Q ss_pred             HHHHHH-HHHHhhCCCCcEEEEeCCC
Q psy9602         208 DLVDYL-RDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       208 ~iv~yf-~~VaeatpdLPIiLYN~P~  232 (239)
                      --.+-. ..|.+.. ++.-++|..|.
T Consensus       208 ~r~d~v~~~i~~~l-~~eklifEAp~  232 (276)
T 1u83_A          208 VRFQIVDDIISSDI-DINRLIFEAPN  232 (276)
T ss_dssp             ---CCHHHHHTTTS-CGGGEEEECCS
T ss_pred             CcHHHHHHHHHhhC-ChhhEEEECCC
Confidence            222445 6667777 67778888875

>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}

Probab=80.53  E-value=15  Score=34.31  Aligned_cols=138  Identities=13%  Similarity=0.134  Sum_probs=94.8

Q ss_pred             hhhhhcc--cccccc-ccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEE-EeccccCCcCCCHHHHHHHH
Q psy9602          77 RRKRLRN--AHGEVV-MIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNL  152 (239)
Q Consensus        77 ~~~~~~~--~~p~~~-~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glv-V~GstGE~~sLT~eER~~li  152 (239)
                      -|...+-  |.++-. ..|| .....++|--     ++-|-.-       ..+-|-|+- .+-+.--+.-|....-++||
T Consensus        34 sR~ayaAAHVVaDP~ad~~P-~~~aaiDWda-----TLafR~~-------Lws~GLGVAEAMDTAQRGMGLDW~~a~ELI  100 (396)
T 4dnh_A           34 SRVAFAAAHVVADPLADNDP-WLAPAIDWER-----TLAFRHR-------LWDLGLGVAESMDTAQRGMGLGWPEARELI  100 (396)
T ss_dssp             SSCEEEECCCCBCTTSCCCT-TTCCCBCHHH-----HHHHHHH-------HHHTTCEEEETCGGGTBTTTBCHHHHHHHH
T ss_pred             chhhhhhhhhccCccccCCC-CCcccCChHH-----HHHHHHH-------HHHccccHHHHHHHhhccCCCCcHHHHHHH
Confidence            3445544  333322 3333 4578899982     3333332       245566665 77888999999999999999


Q ss_pred             HHHHHHhcCC-CceEEEecCCC--------CHHHHH----HHHHHHHhCCCCEEEECCCCC--CCCCCHHHHHHHHHHHH
Q psy9602         153 EAWMTEAKTH-GFTVMVQIGGT--------CFQEVV----ELAKHAESLNVHAVLCLPELF--FTPASVEDLVDYLRDVG  217 (239)
Q Consensus       153 ~~vve~~~G~-rvpVIaGVg~~--------St~eAI----elar~A~~aGAdaVlV~PP~y--~~~~s~e~iv~yf~~Va  217 (239)
                      +....+++.. ...|..|++..        ++++++    |+....++.|+..||...=..  ... ++++..+-|..|.
T Consensus       101 rRs~aeA~~~pg~~ia~G~GTDqL~~~~~~~l~~V~~AY~EQ~~~Ve~~G~~~ILMASRaLA~~A~-~pdDY~~VY~~vL  179 (396)
T 4dnh_A          101 RRSLAEARGRPDALIACGAGTDHLAPGPDVSIDDILAAYESQIEAIEAEGGRIILMASRALAAAAK-GPEDYIRVYDRVL  179 (396)
T ss_dssp             HHHHHHHHTSSSCCEEEEECCTTSCCCTTCCHHHHHHHHHHHHHHHHHTTCCEEECCCHHHHHHCC-SHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCeeeeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEehhHHHHHHhC-CHHHHHHHHHHHH
Confidence            9988776541 25677788732        455554    477888999988887664322  122 8899999999999


Q ss_pred             hhCCCCcEEEEe
Q psy9602         218 EAAPATPLFYYH  229 (239)
Q Consensus       218 eatpdLPIiLYN  229 (239)
                      +.+ +-||||+=
T Consensus       180 ~q~-~~PVILHW  190 (396)
T 4dnh_A          180 SQV-KEPVIIHW  190 (396)
T ss_dssp             HHC-SSCEEEEE
T ss_pred             Hhc-CCCEEEEe
Confidence            999 99999973

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=80.44  E-value=3.5  Score=37.94  Aligned_cols=62  Identities=13%  Similarity=0.122  Sum_probs=45.8

Q ss_pred             CceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEEC--------CCCC--CCC---------------CCHHHHHHHHH
Q psy9602         163 GFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCL--------PELF--FTP---------------ASVEDLVDYLR  214 (239)
Q Consensus       163 rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~--------PP~y--~~~---------------~s~e~iv~yf~  214 (239)
                      .+-||++++   ..|.+.+.++++.|+++|||+|=..        .|+.  |+.               ++. +-+..+.
T Consensus        19 ~~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~-e~~~~L~   97 (349)
T 2wqp_A           19 EPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNE-EDEIKLK   97 (349)
T ss_dssp             CCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCH-HHHHHHH
T ss_pred             ceEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCH-HHHHHHH
Confidence            367888776   4689999999999999999999876        6654  431               133 3345566


Q ss_pred             HHHhhCCCCcEE
Q psy9602         215 DVGEAAPATPLF  226 (239)
Q Consensus       215 ~VaeatpdLPIi  226 (239)
                      +.++.. +++++
T Consensus        98 ~~~~~~-Gi~~~  108 (349)
T 2wqp_A           98 EYVESK-GMIFI  108 (349)
T ss_dssp             HHHHHT-TCEEE
T ss_pred             HHHHHh-CCeEE
Confidence            677777 78887

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=80.43  E-value=6.8  Score=32.56  Aligned_cols=75  Identities=11%  Similarity=-0.053  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..++++.+.+.+...+..+++.....+.+...++.+...+.++|++++.|+..    ++ +   .++.+.+ . ++|+++
T Consensus        25 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~-~---~~~~l~~-~-~iPvV~   94 (288)
T 3gv0_A           25 TSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEP----ND-P---RVRFMTE-R-NMPFVT   94 (288)
T ss_dssp             HHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCT----TC-H---HHHHHHH-T-TCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCC----Cc-H---HHHHHhh-C-CCCEEE
Confidence            45556655555544356677665555555555566667778999999986432    11 2   2344444 4 799999


Q ss_pred             EeCCC
Q psy9602         228 YHIPM  232 (239)
Q Consensus       228 YN~P~  232 (239)
                      +|.+.
T Consensus        95 i~~~~   99 (288)
T 3gv0_A           95 HGRSD   99 (288)
T ss_dssp             ESCCC
T ss_pred             ECCcC
Confidence            98753

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=80.33  E-value=3.8  Score=33.60  Aligned_cols=57  Identities=16%  Similarity=0.117  Sum_probs=35.7

Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC--CCCC-CHHHHHHHHHHHHhhCCC-CcEEE
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF--FTPA-SVEDLVDYLRDVGEAAPA-TPLFY  227 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y--~~~~-s~e~iv~yf~~Vaeatpd-LPIiL  227 (239)
                      +++|++..+..+    ++.+.+.|+|.+++.|-+.  .++. ....-.++++.+.+.. + +||++
T Consensus       117 ~~~~~s~~t~~e----~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~-~~~pvia  177 (227)
T 2tps_A          117 MILGVSAHTMSE----VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG-ISIPIVG  177 (227)
T ss_dssp             SEEEEEECSHHH----HHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT-CCCCEEE
T ss_pred             cEEEEecCCHHH----HHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC-CCCCEEE
Confidence            667877667665    3556788999999865221  1110 0011256778888877 5 89875

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=80.06  E-value=6  Score=33.93  Aligned_cols=78  Identities=8%  Similarity=0.034  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEecC----CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHh--
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQIG----GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGE--  218 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaGVg----~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vae--  218 (239)
                      .+...++++.+.   ++ ++.||+.--    ..+.++.+++.+.+++.|||-+=+....   . +.++....++....  
T Consensus       111 ~~~~~~l~~~~~---~~-~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKia~~a---~-~~~D~l~ll~~~~~~~  182 (238)
T 1sfl_A          111 IEKHQRIITHLQ---QY-NKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMP---H-NKNDVLNLLQAMSTFS  182 (238)
T ss_dssp             HHHHHHHHHHHH---HT-TCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEEECC---S-SHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH---hc-CCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEEEecC---C-CHHHHHHHHHHHHHHh
Confidence            333444444433   23 577887542    4567899999999999999988666432   2 55665555544333  


Q ss_pred             -hCCCCcEEEEeCC
Q psy9602         219 -AAPATPLFYYHIP  231 (239)
Q Consensus       219 -atpdLPIiLYN~P  231 (239)
                       .. +.|++.|+.=
T Consensus       183 ~~~-~~P~I~~~MG  195 (238)
T 1sfl_A          183 DTM-DCKVVGISMS  195 (238)
T ss_dssp             HHC-SSEEEEEECT
T ss_pred             hcC-CCCEEEEECC
Confidence             34 7999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1o5ka_	295	c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermo	9e-15
d1xkya1	292	c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {B	5e-14
d1xxxa1	296	c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {M	8e-12
d2a6na1	292	c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {E	9e-09
d1f74a_	293	c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophil	9e-04

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Length = 295

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

 Score = 69.9 bits (170), Expect = 9e-15
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V GTTGE  ++   ER+  L +   E       V+V  G    ++ ++L K AE L  + 
Sbjct: 41  VLGTTGESPTVNEDERE-KLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANG 99

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF 233
           VL +   +  P + E L  + + + E      +  Y++P  
Sbjct: 100 VLVVTPYYNKP-TQEGLYQHYKYISERTDL-GIVVYNVPGR 138

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Length = 292

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

 Score = 67.6 bits (164), Expect = 5e-14
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
           V GTTGE  ++T+ E+       ++        V+   G       ++L K A  + V A
Sbjct: 43  VGGTTGESPTLTSEEKVALYRHVVSVVD-KRVPVIAGTGSNNTHASIDLTKKATEVGVDA 101

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
           V+ +   +  P S E +  + + + E+ P  P+  Y++P  + V +
Sbjct: 102 VMLVAPYYNKP-SQEGMYQHFKAIAESTPL-PVMLYNVPGRSIVQI 145

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 296

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 61.5 bits (148), Expect = 8e-12
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
           +V+GTTGE  + T  E+   L A +         +    G       + LAK   +   H
Sbjct: 46  VVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA-GTYDTAHSIRLAKACAAEGAH 104

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
            +L +   +  P     L  +   V +A    P+  Y IP  +
Sbjct: 105 GLLVVTPYYSKP-PQRGLQAHFTAVADATE-LPMLLYDIPGRS 145

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

 Score = 52.2 bits (124), Expect = 9e-09
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
             GTTGE  ++   E   ++     +       V+   G     E + L +      +  
Sbjct: 41  SVGTTGESATLNHDEHA-DVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVG 99

Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
            L +   +  P S E L  + + + E     P   Y++P  T   L
Sbjct: 100 CLTVTPYYNRP-SQEGLYQHFKAIAEHTDL-PQILYNVPSATGCDL 143

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} Length = 293

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
            V G+TGE   ++T E+K        EAK     ++ Q+G    +E VEL K+A  L   
Sbjct: 43  YVGGSTGENFMLSTEEKKEIFRIAKDEAKDQ-IALIAQVGSVNLKEAVELGKYATELGYD 101

Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRV 236
            +  +   ++        + +  D   A   + +  Y IP  T V
Sbjct: 102 CLSAVTPFYY--KFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGV 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	99.97
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	99.97
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	99.97
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	99.97
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	99.96
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	99.96
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	99.95
d1geha1	307	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	94.56
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	94.13
d2d69a1	291	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	93.37
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	92.88
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	92.79
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	92.73
d2f6ka1	306	Putative amidohydrolase LP2961 {Lactobacillus plan	91.47
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	91.23
d2hbva1	331	2-amino-3-carboxymuconate 6-semialdehyde decarboxy	91.16
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	90.94
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	90.01
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	89.49
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	89.43
d2dria_	271	D-ribose-binding protein {Escherichia coli, strain	89.29
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	89.08
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	88.61
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	88.37
d2fvya1	305	Galactose/glucose-binding protein {Escherichia col	88.12
d2dvta1	325	Thermophilic reversible gamma-resorcylate decarbox	87.57
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	87.4
d5ruba1	320	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	86.79
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	86.75
d1guda_	288	D-allose-binding protein {Escherichia coli [TaxId:	85.87
d1rqba2	303	Transcarboxylase 5S subunit, N-terminal domain {Pr	85.57
d1bwva1	328	Ribulose 1,5-bisphosphate carboxylase-oxygenase {G	85.49
d1f61a_	418	Isocitrate lyase {Mycobacterium tuberculosis [TaxI	85.4
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	84.28
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	83.96
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	83.49
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	83.36
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	81.82
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	81.74
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	80.84
d2nzug1	275	Glucose-resistance amylase regulator CcpA, C-termi	80.77
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	80.75
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	80.21
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	80.2

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=4.5e-33  Score=244.62  Aligned_cols=130  Identities=21%  Similarity=0.303  Sum_probs=119.8

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      .+++||++++.+.++|++                    -.|+.|++++|+|||+++||.+||+++++.+++.+++ ++||
T Consensus        15 ~d~~iD~~~~~~~i~~l~--------------------~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~v   73 (295)
T d1o5ka_          15 KNGELDLESYERLVRYQL--------------------ENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-KIPV   73 (295)
T ss_dssp             ETTEECHHHHHHHHHHHH--------------------HTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-SSCE
T ss_pred             CCCcCCHHHHHHHHHHHH--------------------HcCCCEEEECeeccchhhCCHHHHHHHhhhhcccccc-CCce
Confidence            567777777777777762                    2456689999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|+++.|++++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||++||+|..+|+.++
T Consensus        74 i~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP~y~~~-s~~~i~~~~~~ia~a~-~~pi~iYn~P~~~g~~~~  144 (295)
T d1o5ka_          74 IVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKP-TQEGLYQHYKYISERT-DLGIVVYNVPGRTGVNVL  144 (295)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHTTC-SSCEEEEECHHHHSCCCC
T ss_pred             EeecccccHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-CHHHHHHHHHHHHhcc-CCCeeEEeccchhcccch
Confidence            9999999999999999999999999999999999999 9999999999999998 899999999999998875

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=99.97  E-value=4.2e-32  Score=238.47  Aligned_cols=130  Identities=22%  Similarity=0.318  Sum_probs=119.0

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      +|++||++++.+.++|++                    -.|+.|++++|++||+++||.+||.++++.+++.+++ ++||
T Consensus        17 ~d~~iD~~~~~~~i~~l~--------------------~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~-~~~v   75 (292)
T d1xkya1          17 INGNIDFAKTTKLVNYLI--------------------DNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK-RVPV   75 (292)
T ss_dssp             TTSSBCHHHHHHHHHHHH--------------------HTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCE
T ss_pred             CCcCcCHHHHHHHHHHHH--------------------HCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCC-CceE
Confidence            577777777777777662                    2445588999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|+++.|++++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||++||+|..+|+.++
T Consensus        76 i~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~-s~~~i~~~~~~v~~~~-~~pi~iYn~P~~~~~~~~  146 (292)
T d1xkya1          76 IAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKP-SQEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQIS  146 (292)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCC-CHHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCC
T ss_pred             EEecCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCC-CHHHHHHHHHHHhccC-CCcEEEEeCCcccCCccC
Confidence            9999999999999999999999999999999999999 9999999999999999 799999999999998775

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.4e-32  Score=239.05  Aligned_cols=130  Identities=19%  Similarity=0.262  Sum_probs=120.7

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++++++.++|++                    -.|+.|++++|++||+++||.+||+++++.+++.+++ ++||
T Consensus        15 ~d~~iD~~~~~~~i~~l~--------------------~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~v   73 (292)
T d2a6na1          15 EKGNVCRASLKKLIDYHV--------------------ASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADG-RIPV   73 (292)
T ss_dssp             TTSSBCHHHHHHHHHHHH--------------------HHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-SSCE
T ss_pred             CCCCCCHHHHHHHHHHHH--------------------HcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccc-ccee
Confidence            677888888877777772                    2456689999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|+++.|++++++++++|+++|+|+++++||+|+++ +++++++||+.|++++ ++||++||+|..+|+.++
T Consensus        74 i~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~-~~~~i~~~f~~v~~~~-~~pi~iYn~P~~~g~~~~  144 (292)
T d2a6na1          74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP-SQEGLYQHFKAIAEHT-DLPQILYNVPSATGCDLL  144 (292)
T ss_dssp             EEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCSSCC-CHHHHHHHHHHHHHTC-SSCEEEEECHHHHSCCCC
T ss_pred             EeecccchHHHHHHHhccHHhcCCcceeccCCCCCCC-CHHHHHHHHHHHhhcc-CCcEEEEEeccccCCccC
Confidence            9999999999999999999999999999999999998 9999999999999999 899999999999999875

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.2e-31  Score=237.00  Aligned_cols=130  Identities=22%  Similarity=0.268  Sum_probs=119.9

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++++.+.++|++                    -.|+.|++++|++||+++||.+||+++++.+++.+++ ++||
T Consensus        21 ~dg~iD~~~l~~~i~~li--------------------~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~-~~~v   79 (296)
T d1xxxa1          21 GDGSLDTATAARLANHLV--------------------DQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD-RARV   79 (296)
T ss_dssp             TTSCBCHHHHHHHHHHHH--------------------HTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT-TSEE
T ss_pred             CCcCcCHHHHHHHHHHHH--------------------HcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhcc-ccce
Confidence            577788877777777772                    2455689999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|+++.|++++++++++|+++|+|++|++||+|+++ +++++++||++|++++ ++||++||+|..+|+.++
T Consensus        80 i~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~-~~~~l~~~~~~v~~~~-~~pi~lYn~p~~~g~~~~  150 (296)
T d1xxxa1          80 IAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKP-PQRGLQAHFTAVADAT-ELPMLLYDIPGRSAVPIE  150 (296)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHTTC-SSCEEEEECHHHHSSCCC
T ss_pred             EeccccchhHHHHHHHHHHHHhcCCeEEEEeccCCCC-CHHHHHHHHHHHHHhc-CCCEEEEECccccCCCCC
Confidence            9999999999999999999999999999999999999 9999999999999999 899999999999998775

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.96  E-value=4.1e-31  Score=232.91  Aligned_cols=130  Identities=24%  Similarity=0.368  Sum_probs=118.8

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT  165 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp  165 (239)
                      ++++||++++.+.++|++                    .+ |+.|++++|++||++.||.+||.++++.+++.+++ ++|
T Consensus        17 ~dg~iD~~~l~~~i~~li--------------------~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~-~~~   75 (293)
T d1f74a_          17 EDGTINEKGLRQIIRHNI--------------------DKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIA   75 (293)
T ss_dssp             TTSCBCHHHHHHHHHHHH--------------------HTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSE
T ss_pred             CCCCcCHHHHHHHHHHHH--------------------HhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccC-ccc
Confidence            577777777777777662                    24 55688999999999999999999999999999999 999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      ||+|+++.+++++++++++|+++|||++|++||+|+++ +++++++||+.+++++ ++||++||+|..||++|+
T Consensus        76 vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP~~~~~-s~~~~~~~~~~v~~~~-~~pi~iYn~P~~tg~~l~  147 (293)
T d1f74a_          76 LIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF-SFPEIKHYYDTIIAET-GSNMIVYSIPFLTGVNMG  147 (293)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHTCSEEECCCCCSSCC-CHHHHHHHHHHHHHHH-CCCEEEECCSSCSCHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHcCCCEeeccCcccccc-chHHHHHHHhcccccC-CceEEEEeeccceecccc
Confidence            99999999999999999999999999999999999999 9999999999999998 899999999999998763

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.3e-30  Score=227.93  Aligned_cols=131  Identities=26%  Similarity=0.374  Sum_probs=121.4

Q ss_pred             cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602          87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV  166 (239)
Q Consensus        87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV  166 (239)
                      ++++||++++.+.++|++                    -.|+.|++++|++||+++||.+||.++++.+++.+++ ++|+
T Consensus        16 ~dg~iD~~~l~~~i~~l~--------------------~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~-~~pv   74 (295)
T d1hl2a_          16 QQQALDKASLRRLVQFNI--------------------QQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG-KIKL   74 (295)
T ss_dssp             TTSSBCHHHHHHHHHHHH--------------------HHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-TSEE
T ss_pred             CCcCcCHHHHHHHHHHHH--------------------HcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhcc-ccce
Confidence            678888888888888772                    2456689999999999999999999999999999999 9999


Q ss_pred             EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                      |+|+++.|++++++++++|+++|||++|++||+|+.+ +++++++||.+++++++++|+++||+|..+|++++
T Consensus        75 i~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~~~-~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~  146 (295)
T d1hl2a_          75 IAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPF-SFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLT  146 (295)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCC
T ss_pred             eeccccchhhHHHHHHHHHHhcCCceeeeeeccccCC-ChHHHHHHHHHHhcccCcCcccccccccccccccc
Confidence            9999999999999999999999999999999999998 99999999999999887899999999999999875

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=4.3e-29  Score=219.87  Aligned_cols=131  Identities=25%  Similarity=0.396  Sum_probs=116.3

Q ss_pred             ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602          84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT  161 (239)
Q Consensus        84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G  161 (239)
                      ++|  ++++||++++.+.++|++                    -.|+.|++++|+|||++.||.+||.++++.+++.   
T Consensus         8 ~TPf~~dg~iD~~~~~~~i~~l~--------------------~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~---   64 (293)
T d1w3ia_           8 ITPFTKDNRIDKEKLKIHAENLI--------------------RKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV---   64 (293)
T ss_dssp             CCCBCTTSSBCHHHHHHHHHHHH--------------------HTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT---
T ss_pred             eCCCCCCcCCCHHHHHHHHHHHH--------------------HcCCCEEEECeechhhhhCCHHHHHHHHHHHHhh---
Confidence            455  788899998888888873                    2456689999999999999999999999988875   


Q ss_pred             CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602         162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK  239 (239)
Q Consensus       162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls  239 (239)
                       ..++|+||++.|++++++++++|+++|+|+++++||+||...+++++++||++|++++ ++||++||+|.+||++++
T Consensus        65 -~~~~i~gv~~~st~~~i~~a~~a~~~Ga~~~~~~~P~~~~~~~~~~i~~~f~~Ia~a~-~~pi~lYn~P~~~g~~l~  140 (293)
T d1w3ia_          65 -TNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS-PHPVYLYNYPTATGKDID  140 (293)
T ss_dssp             -CSCEEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred             -ccccccccccchhhhhhhhhhhhhhhccccccccccchhccchHHHHHHHHHHHHHhh-ccceeeeccccccccccc
Confidence             4578999999999999999999999999999999998664339999999999999999 899999999999999875

>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]

Probab=94.56  E-value=0.038  Score=47.98  Aligned_cols=106  Identities=10%  Similarity=-0.033  Sum_probs=69.1

Q ss_pred             HHHHhhHHhhhcCCCCEEEe-ccccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCC
Q psy9602         115 CMLLVGITLRMAPIIDQMVN-GTTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLN  189 (239)
Q Consensus       115 ~~l~~~v~~~~~gg~glvV~-GstGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aG  189 (239)
                      +.|+.-+.....||.+++=- =....-.+...+||.+.+..+++.    ++. ++-..+++++ ++++.++.++.|+++|
T Consensus        35 ~~~a~~~~~~~~GGvD~IKDDe~la~~~~~p~~eRv~~~~~a~~~a~~~TG~-~~lYa~NiT~-~~~em~~ra~~a~~~G  112 (307)
T d1geha1          35 EEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGE-KKTWFANITA-DLLEMEQRLEVLADLG  112 (307)
T ss_dssp             HHHHHHHHHHHHTTCCEEECCTTCCCCTTSCHHHHHHHHHHHHHHHHHHTCS-CCEEECBCCS-SHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCeeeCCccccCCCCCcHHHHHHHHHHHHHHHHHHhCC-eeEEEEEccC-ChHHHHHHHHHHHHcC
Confidence            33433344445677776622 123566788899999666666654    443 4444457775 8899999999999999


Q ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         190 VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       190 AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      ++++|+.+..+ .    =..+..++.+.+.. ++||+.+
T Consensus       113 ~~~vmi~~~~~-G----~~al~~lr~~~~~~-~lpIh~H  145 (307)
T d1geha1         113 LKHAMVDVVIT-G----WGALRYIRDLAADY-GLAIHGH  145 (307)
T ss_dssp             CCEEEEEHHHH-C----HHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CCEEEEecccc-c----hHHHHHHHHhhccC-CeEEEec
Confidence            99999996322 1    12446666666666 6777554

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.14  Score=43.79  Aligned_cols=84  Identities=12%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC---CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT---CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV  210 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~---St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv  210 (239)
                      +|+.+=-..++.+|...-++.+++...+.++-||+=+-+.   +.+++|+.++.+.++|||++++..+    . +.+++ 
T Consensus       121 ~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~----~-~~~~~-  194 (289)
T d1muma_         121 CGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI----T-ELAMY-  194 (289)
T ss_dssp             TTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC----C-CHHHH-
T ss_pred             cccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhcCCcEEEecCC----C-CHHHH-
Confidence            3555444567999999999999987665345577755443   6999999999999999999987543    2 55554 


Q ss_pred             HHHHHHHhhCCCCcEEE
Q psy9602         211 DYLRDVGEAAPATPLFY  227 (239)
Q Consensus       211 ~yf~~VaeatpdLPIiL  227 (239)
                         +.++++. +.|+++
T Consensus       195 ---~~~~~~~-~~Pl~~  207 (289)
T d1muma_         195 ---RQFADAV-QVPILA  207 (289)
T ss_dssp             ---HHHHHHH-CSCBEE
T ss_pred             ---HHHHHhc-CCCEEE
Confidence               4555666 467754

>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.37  E-value=0.055  Score=46.61  Aligned_cols=105  Identities=12%  Similarity=-0.060  Sum_probs=68.7

Q ss_pred             HHHhhHHhhhcCCCCEEEe-ccccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCCC
Q psy9602         116 MLLVGITLRMAPIIDQMVN-GTTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       116 ~l~~~v~~~~~gg~glvV~-GstGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aGA  190 (239)
                      .|+.-+.....+|.+++=- =....-.+...+||.+.+..+++.    ++. ++-..+++++ ++++.++.++.++++|+
T Consensus        36 ~~a~~~~~~~~GGvD~IKDDe~l~~~~~~p~~eRv~~~~~a~~~a~~~tG~-~~~Ya~Nit~-~~~~m~~ra~~~~~~G~  113 (291)
T d2d69a1          36 EYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGE-TKEYLINITG-PVNIMEKRAEMVANEGG  113 (291)
T ss_dssp             HHHHHHHHHHHTTCSEEECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSS-CCEEECBCCS-SHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHccCCceecCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eeEEEEeccC-CHHHHHHHHHHHHHcCC
Confidence            3333344456677776511 122556788899999777666654    444 5555558875 79999999999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +++|+.+..+-     =..+..++..++.. ++||..+
T Consensus       114 ~~vmi~~~~~G-----~~al~~l~~~~~~~-~l~ih~H  145 (291)
T d2d69a1         114 QYVMIDIVVAG-----WSALQYMREVTEDL-GLAIHAH  145 (291)
T ss_dssp             CEEEEEHHHHC-----HHHHHHHHHHHHHH-TCEEEEE
T ss_pred             CEEEecccccc-----hHHHHHHHHhhccc-cceeeec
Confidence            99999863321     12455556655555 5666554

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.88  E-value=0.79  Score=38.20  Aligned_cols=86  Identities=16%  Similarity=0.075  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CCCC---------CCCCHHHHHHH
Q psy9602         144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--ELFF---------TPASVEDLVDY  212 (239)
Q Consensus       144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~y~---------~~~s~e~iv~y  212 (239)
                      ..+++.+.++........ ..+++.-..+.+.++-++.++.+++.|||++-+--  |..-         .. +++.+.+.
T Consensus        85 g~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~-~~~~~~~i  162 (312)
T d1gtea2          85 TAAYWCQSVTELKADFPD-NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQ-DPELVRNI  162 (312)
T ss_dssp             CHHHHHHHHHHHHHHCTT-SEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGG-CHHHHHHH
T ss_pred             chhhhhhhhccccccccc-cccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhh-hHHHHHHH
Confidence            357777888777766654 44444455677888899999999999999998843  3311         11 56778888


Q ss_pred             HHHHHhhCCCCcEEEEeCCC
Q psy9602         213 LRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       213 f~~VaeatpdLPIiLYN~P~  232 (239)
                      .+.+.+.+ ++||++==-|.
T Consensus       163 ~~~v~~~~-~~pv~vKl~~~  181 (312)
T d1gtea2         163 CRWVRQAV-QIPFFAKLTPN  181 (312)
T ss_dssp             HHHHHHHC-SSCEEEEECSC
T ss_pred             HHHHhhcc-CCceeeccccc
Confidence            99999988 89999865454

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=92.79  E-value=0.37  Score=40.57  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC----CCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602         140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG----GTCFQEVVELAKHAESLNVHAVLCLPE  198 (239)
Q Consensus       140 ~~sLT~eER~~li~~vve~~~G~rvpVIaGVg----~~St~eAIelar~A~~aGAdaVlV~PP  198 (239)
                      ....+.+|...-++.+++...+.+.-|++=+-    ..+.+++|+.++.+.++|||++++..+
T Consensus       127 ~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~  189 (275)
T d1s2wa_         127 QPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSK  189 (275)
T ss_dssp             CCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             cccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeeeccc
Confidence            45788999999999998876543566777443    357999999999999999999998654

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.73  E-value=0.11  Score=45.39  Aligned_cols=106  Identities=10%  Similarity=-0.119  Sum_probs=69.9

Q ss_pred             HHHhhHHhhhcCCCCEEEe-ccccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCCC
Q psy9602         116 MLLVGITLRMAPIIDQMVN-GTTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       116 ~l~~~v~~~~~gg~glvV~-GstGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aGA  190 (239)
                      .|+.-+.....||.+++=- =....-.+...+||.+.+..+++.    ++. +.-..+++++.+.++.++.++.|+++|+
T Consensus        34 ~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~eTG~-~k~y~~nit~~~~~em~~ra~~a~e~G~  112 (325)
T d1wdda1          34 NYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGE-IKGHYLNATAGTCEEMIKRAVFARELGV  112 (325)
T ss_dssp             HHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSS-CCEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHhhCC-ceeEEeccCCCCHHHHHHHHHHHHHcCC
Confidence            3333344456677777621 123566788899998777655554    333 5667779999999999999999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +++|+.+-.+ .    =..+.+.+..+... ++||..+
T Consensus       113 ~~~mi~~~~~-G----~~a~~~l~~~~~~~-~l~ih~H  144 (325)
T d1wdda1         113 PIVMHDYLTG-G----FTANTSLAHYCRDN-GLLLHIH  144 (325)
T ss_dssp             SEEEEEHHHH-C----HHHHHHHHHHHHHH-TCEEEEE
T ss_pred             CEEEEecccc-c----HHHHHHHHHhhhhc-Cceeecc
Confidence            9999975322 1    12344455554444 6776653

>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative amidohydrolase LP2961
species: Lactobacillus plantarum [TaxId: 1590]

Probab=91.47  E-value=0.42  Score=39.40  Aligned_cols=88  Identities=9%  Similarity=-0.081  Sum_probs=60.0

Q ss_pred             ccCCcCCCHHHHHHHHHH-------HHHHhcCCCceEEEecCCCCHHHHHHHHHHHH-hCCCCEEEECCCCC-CCCCCHH
Q psy9602         137 TGEGVSMTTAERKLNLEA-------WMTEAKTHGFTVMVQIGGTCFQEVVELAKHAE-SLNVHAVLCLPELF-FTPASVE  207 (239)
Q Consensus       137 tGE~~sLT~eER~~li~~-------vve~~~G~rvpVIaGVg~~St~eAIelar~A~-~aGAdaVlV~PP~y-~~~~s~e  207 (239)
                      ......+..++-..+.+.       ++..-.+ |.-.++.+.-.+.+++++.++++. +.|+.++.+.|++- +.. +++
T Consensus        57 ~p~~~~~~~~~~~~~~~~~Nd~~~~~~~~~P~-Rf~~~a~vp~~~~~~a~~el~r~~~~~G~~Gi~~~~~~~~~~~-~dp  134 (306)
T d2f6ka1          57 SPHVNFGDKAETIRLVEAANDDGKSLAQQYPD-QLGYLASLPIPYELDAVKTVQQALDQDGALGVTVPTNSRGLYF-GSP  134 (306)
T ss_dssp             SSCSCSSCHHHHHHHHHHHHHHHHHHHHHCTT-TEEEEECCCTTCHHHHHHHHHHHHHTSCCSEEEEESEETTEET-TCG
T ss_pred             CcccccCCHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeecccchhhHHHHHHHHHHhcccceEEEecCccccccC-CCc
Confidence            334455677766655432       2333345 666666676678999999888764 67999999876542 223 667


Q ss_pred             HHHHHHHHHHhhCCCCcEEEE
Q psy9602         208 DLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       208 ~iv~yf~~VaeatpdLPIiLY  228 (239)
                      .+...|+.+.+ . ++||+++
T Consensus       135 ~~~pi~~~~~e-~-~lpv~~H  153 (306)
T d2f6ka1         135 VLERVYQELDA-R-QAIVALH  153 (306)
T ss_dssp             GGHHHHHHHHT-T-TCEEEEE
T ss_pred             cchHHHHHHHH-c-CCceEec
Confidence            78888887766 4 8999997

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.23  E-value=0.27  Score=41.94  Aligned_cols=106  Identities=11%  Similarity=-0.031  Sum_probs=72.1

Q ss_pred             HHHHHHhhHHhhhcCCCCEEEe-ccccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602         113 LTCMLLVGITLRMAPIIDQMVN-GTTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAES  187 (239)
Q Consensus       113 ~~~~l~~~v~~~~~gg~glvV~-GstGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~  187 (239)
                      +-+.|+.-+.....||.+++=- =..+.-.+...+||...+..+++.    ++. ++-..++|+ .++++.++.++.+++
T Consensus        33 sp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~-~~lya~NiT-~~~~em~~ra~~~~~  110 (283)
T d1ykwa1          33 SPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGE-PKIYLANIT-DEVDSLMEKHDVAVR  110 (283)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSS-CCEEEEECC-CCGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCC-eeEEeeecC-CCHHHHHHHHHHHHH
Confidence            3334444444556777777632 133456777889998877666654    333 566667887 599999999999999


Q ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       188 aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      +|++++|+.+-.+ .       +.-++.+++.+ ++||..+-
T Consensus       111 ~G~~~~mv~~~~~-G-------~~a~~~l~~~~-~lpi~~H~  143 (283)
T d1ykwa1         111 NGANALLINALPV-G-------LSAVRMLSNYT-QVPLIGHF  143 (283)
T ss_dssp             HTCCEEEEEHHHH-C-------HHHHHHHHHHC-SSCEEEEC
T ss_pred             hCCCEEEEecccc-h-------HHHHHHHHhhc-CCCeEeee
Confidence            9999999986221 1       23455666666 88888764

>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=91.16  E-value=0.58  Score=38.29  Aligned_cols=92  Identities=12%  Similarity=-0.009  Sum_probs=62.2

Q ss_pred             cCCcCCCHHHHHHHHH----HHHHHhcCC--CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH
Q psy9602         138 GEGVSMTTAERKLNLE----AWMTEAKTH--GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD  211 (239)
Q Consensus       138 GE~~sLT~eER~~li~----~vve~~~G~--rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~  211 (239)
                      ...+....++-.++.+    .+.+.+..+  |+..++.+.-.+.+++++..+.+.+.|+.++.+.+++...+.++..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~Nd~~~~~~~~~p~R~~~~~~v~~~~~~~a~~el~r~~~~g~~g~~l~~~~~~~~~~d~~~~p  160 (331)
T d2hbva1          81 MFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEASRAVAAGHLGIQIGNHLGDKDLDDATLEA  160 (331)
T ss_dssp             GCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTSHHHHHHHHHHHHHHTCCCEEEESCBTTBCTTSHHHHH
T ss_pred             ccccccchhhhhhHHHHhhHHHHHHHhhccCcceeeeEeecccchhhhhHHHHhhhhcceeeeecccccCcccccchhhH
Confidence            3445555555444432    233333321  4555555556678999999999999999999987654322228889999


Q ss_pred             HHHHHHhhCCCCcEEEEeCC
Q psy9602         212 YLRDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       212 yf~~VaeatpdLPIiLYN~P  231 (239)
                      .|+.+.+.  ++||+++-.+
T Consensus       161 ~~~~~~e~--~~pv~iH~~~  178 (331)
T d2hbva1         161 FLTHCANE--DIPILVHPWD  178 (331)
T ss_dssp             HHHHHHHT--TCCEEEECCS
T ss_pred             HHHHHhcc--CCceEEecCC
Confidence            99999885  8999998543

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.94  E-value=0.87  Score=38.09  Aligned_cols=83  Identities=11%  Similarity=0.082  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEecC--------CCC-HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q psy9602         145 TAERKLNLEAWMTEAKTHGFTVMVQIG--------GTC-FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRD  215 (239)
Q Consensus       145 ~eER~~li~~vve~~~G~rvpVIaGVg--------~~S-t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~  215 (239)
                      .+++.+.++.+.+.+....+|+++=+.        ..+ .+..+..++.+.++|+|-+-+-.|..... ..++.+.+|+.
T Consensus       135 ~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~~~-~~~~~~~~~~~  213 (291)
T d1to3a_         135 AQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKG-ARSDLLTASQR  213 (291)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGCS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCchh-hhHHHHHHHHH
Confidence            467778888887776655799887331        122 33467788999999999999998876665 78899999999


Q ss_pred             HHhhCCCCcEEEEe
Q psy9602         216 VGEAAPATPLFYYH  229 (239)
Q Consensus       216 VaeatpdLPIiLYN  229 (239)
                      +.+++ +.|+++--
T Consensus       214 ~~~~~-~~p~vvLs  226 (291)
T d1to3a_         214 LNGHI-NMPWVILS  226 (291)
T ss_dssp             HHHTC-CSCEEECC
T ss_pred             HhhcC-CCcEEEEe
Confidence            99999 79988753

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=0.55  Score=37.53  Aligned_cols=74  Identities=4%  Similarity=-0.136  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602         147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF  226 (239)
Q Consensus       147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi  226 (239)
                      +..+-++.+.+..+   ..++. ++..+.++.++.++.+...|+|++++.|+..      +..-..++.+.++  ++||+
T Consensus        18 ~~~~g~~~aa~~~G---~~~i~-~~~~d~~~q~~~i~~li~~~vDgiIi~~~~~------~~~~~~~~~a~~~--giPVV   85 (305)
T d8abpa_          18 TEWKFADKAGKDLG---FEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDP------KLGSAIVAKARGY--DMKVI   85 (305)
T ss_dssp             HHHHHHHHHHHHHT---EEEEE-EECCSHHHHHHHHHHHHHTTCCEEEEECSCG------GGHHHHHHHHHHT--TCEEE
T ss_pred             HHHHHHHHHHHHcC---CEEEE-EcCCCHHHHHHHHHHHHHcCCCEEEEccccc------cccHHHHHHHHhc--CCCEE
Confidence            34444455555443   44433 3456788899999999999999999998642      2344455556554  79999


Q ss_pred             EEeCCC
Q psy9602         227 YYHIPM  232 (239)
Q Consensus       227 LYN~P~  232 (239)
                      .+|.|.
T Consensus        86 ~~d~~~   91 (305)
T d8abpa_          86 AVDDQF   91 (305)
T ss_dssp             EESSCC
T ss_pred             EEcCcc
Confidence            998653

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.49  E-value=0.32  Score=40.96  Aligned_cols=59  Identities=19%  Similarity=0.190  Sum_probs=46.4

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL  199 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~  199 (239)
                      ..|.||+-..++.+- .+.++.+.+..   ++||++|.|=.+.+++-++.    +.|||+++|-.-.
T Consensus       174 ~~GvTG~~~~~~~~~-~~~i~~ik~~t---~~Pi~vGFGI~~~e~v~~~~----~~gaDGvIVGSai  232 (261)
T d1rd5a_         174 VNGVTGPRANVNPRV-ESLIQEVKKVT---NKPVAVGFGISKPEHVKQIA----QWGADGVIIGSAM  232 (261)
T ss_dssp             SSCCBCTTSCBCTHH-HHHHHHHHHHC---SSCEEEESCCCSHHHHHHHH----HTTCSEEEECHHH
T ss_pred             ccCcccccccchhHH-HHHHHHhhhcc---CCCeEEEcCCCCHHHHHHHH----hcCCCEEEECHHH
Confidence            579999999888754 67777777764   57999999988887765554    4699999998643

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=1  Score=35.82  Aligned_cols=82  Identities=10%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP  221 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp  221 (239)
                      |+..=.-++++.+.+.+...+.-+++..+. .+.++..+..+...+.++||+++.++..    ..+   .....+. .. 
T Consensus        10 l~~~~~~~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~----~~~---~~~~~~~-~~-   80 (271)
T d1jyea_          10 LALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLD----DQD---AIAVEAA-CT-   80 (271)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC----HHH---HHHHHHH-TT-
T ss_pred             CCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeccccC----chh---HHHHHHH-hc-
Confidence            444444555555555554435677776554 5677777888888888999999976431    122   2233343 34 


Q ss_pred             CCcEEEEeCCCC
Q psy9602         222 ATPLFYYHIPMF  233 (239)
Q Consensus       222 dLPIiLYN~P~~  233 (239)
                      ++|++++|.+..
T Consensus        81 ~iPvV~~d~~~~   92 (271)
T d1jyea_          81 NVPALFLDVSDQ   92 (271)
T ss_dssp             TSCEEESSSCTT
T ss_pred             CCCeeeeecccc
Confidence            799999998743

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-ribose-binding protein
species: Escherichia coli, strain k-12 [TaxId: 562]

Probab=89.29  E-value=1.2  Score=34.29  Aligned_cols=83  Identities=10%  Similarity=0.005  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA  222 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd  222 (239)
                      ++..=+.++++-+.+++..+..-+++..+..+.+...+.++.+...|+|++++.|...-.      +.+.++.+.+.  +
T Consensus        11 ~~~~f~~~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~------~~~~~~~~~~~--~   82 (271)
T d2dria_          11 LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDA------VGNAVKMANQA--N   82 (271)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTT------THHHHHHHHHT--T
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCcccccccccccc------hHHHHHHHhhc--c
Confidence            444344445554444333324677777788899999999999999999999998754322      23344555554  7


Q ss_pred             CcEEEEeCCCC
Q psy9602         223 TPLFYYHIPMF  233 (239)
Q Consensus       223 LPIiLYN~P~~  233 (239)
                      +|++++|.+..
T Consensus        83 ipvV~~~~~~~   93 (271)
T d2dria_          83 IPVITLDRQAT   93 (271)
T ss_dssp             CCEEEESSCCS
T ss_pred             eeEEEeccccc
Confidence            99999997643

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=89.08  E-value=0.83  Score=37.70  Aligned_cols=70  Identities=17%  Similarity=0.188  Sum_probs=57.3

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +-.|++-+.+.+.++.++.++.+...|||.+=+=-=++....+.+++.+..+.+-+..+++||++=.-+.
T Consensus        15 ~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~   84 (252)
T d1gqna_          15 MPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSA   84 (252)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBG
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEech
Confidence            5567778999999999999999999999999887665543326789999999999888679999855443

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.61  E-value=0.98  Score=35.20  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602         150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH  229 (239)
Q Consensus       150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN  229 (239)
                      ++++-+.+++...+..+++..+..+.+...+..+.+...++|+++++++..    + +....   ...+.. ++|+++++
T Consensus        17 ~~~~gi~~~~~~~gy~~~~~~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~----~-~~~~~---~~~~~~-~iPvV~~~   87 (282)
T d1dbqa_          17 EIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY----P-EPLLA---MLEEYR-HIPMVVMD   87 (282)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCC----C-HHHHH---HHHHTT-TSCEEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEeeecccc----c-chhhh---hHHhhc-CCCceEEE
Confidence            444443333322246778888889999999999999999999999987643    2 22221   222334 79999998


Q ss_pred             CCC
Q psy9602         230 IPM  232 (239)
Q Consensus       230 ~P~  232 (239)
                      .+.
T Consensus        88 ~~~   90 (282)
T d1dbqa_          88 WGE   90 (282)
T ss_dssp             CSS
T ss_pred             ecc
Confidence            643

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.37  E-value=0.48  Score=39.61  Aligned_cols=57  Identities=21%  Similarity=0.102  Sum_probs=39.4

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP  197 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P  197 (239)
                      ..|.||.-..+.. +-.+.++.+.+..   ++||++|.|=.+.+++.+.    .+.|||+++|-.
T Consensus       165 ~~GvTG~~~~~~~-~~~~~v~~vk~~t---~~Pv~vGFGI~~~e~v~~~----~~~~ADGvIVGS  221 (248)
T d1geqa_         165 LYGTTGAREEIPK-TAYDLLRRAKRIC---RNKVAVGFGVSKREHVVSL----LKEGANGVVVGS  221 (248)
T ss_dssp             CC-------CCCH-HHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHH----HHTTCSEEEECH
T ss_pred             cccccccchhhhh-hHHHHHHHHhhhc---ccceeeecccCCHHHHHHH----HhcCCCEEEECH
Confidence            7899999998885 5567888888875   5799999998887776554    457999999974

>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Galactose/glucose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=1.9  Score=33.73  Aligned_cols=82  Identities=7%  Similarity=-0.034  Sum_probs=58.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCC-CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy9602         143 MTTAERKLNLEAWMTEAKTH-GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP  221 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~-rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp  221 (239)
                      |+..=+..+.+-+.+.++.. .+.+++.-+..+..+.++.++.+.+.|+|++++.|...      ..+..-+....+.  
T Consensus        11 ~~~~f~~~i~~gi~~~a~~~~~~~l~~~~~~~~~~~q~~~i~~li~~~vDgiii~~~~~------~~~~~~~~~~~~~--   82 (305)
T d2fvya1          11 YDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP------AAAGTVIEKARGQ--   82 (305)
T ss_dssp             TTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG------GGHHHHHHHHHTT--
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEeecccc------cccHHHHHHHHhc--
Confidence            44444455666665555321 47788877888999999999999999999999997432      3344455555554  


Q ss_pred             CCcEEEEeCCC
Q psy9602         222 ATPLFYYHIPM  232 (239)
Q Consensus       222 dLPIiLYN~P~  232 (239)
                      ++|++++|.+.
T Consensus        83 ~ipvv~~~~~~   93 (305)
T d2fvya1          83 NVPVVFFNKEP   93 (305)
T ss_dssp             TCCEEEESSCC
T ss_pred             CCceeeeeecc
Confidence            79999999864

>d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Thermophilic reversible gamma-resorcylate decarboxylase
species: Rhizobium sp. MTP-10005 [TaxId: 267998]

Probab=87.57  E-value=1.5  Score=36.12  Aligned_cols=68  Identities=9%  Similarity=0.038  Sum_probs=51.9

Q ss_pred             HHhcCCCceEEEecCCCCHHHHHHHHHHH-HhCCCCEEEECCCCCC-------CCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         157 TEAKTHGFTVMVQIGGTCFQEVVELAKHA-ESLNVHAVLCLPELFF-------TPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       157 e~~~G~rvpVIaGVg~~St~eAIelar~A-~~aGAdaVlV~PP~y~-------~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +.-.+ |..-++.+.-.+.+++++..+.+ ++.|+.++.+.+.+..       .. +++.+...|+.+.+.  ++||+++
T Consensus        89 ~~~P~-Rf~~~~~v~~~~~~~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~-~d~~~~pi~~~~~e~--~lpv~iH  164 (325)
T d2dvta1          89 AKRPD-RFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYY-DLPQYRPFWGEVEKL--DVPFYLH  164 (325)
T ss_dssp             HHCTT-TEEEEECCCTTSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCT-TSGGGHHHHHHHHHH--TCCEEEE
T ss_pred             ccCCC-eEEEEEEccccccchhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccc-cCcccchHHHHHhhC--CceEEEe
Confidence            34455 77778888888889999888876 5679999998764321       12 667888999988886  8999987

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.40  E-value=1.1  Score=38.03  Aligned_cols=82  Identities=18%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHH----HhcCCCceEEEec-------CCCCHHHHHHHHHHHHhCCCCEEEECC-------CCCCCCCC
Q psy9602         144 TTAERKLNLEAWMT----EAKTHGFTVMVQI-------GGTCFQEVVELAKHAESLNVHAVLCLP-------ELFFTPAS  205 (239)
Q Consensus       144 T~eER~~li~~vve----~~~G~rvpVIaGV-------g~~St~eAIelar~A~~aGAdaVlV~P-------P~y~~~~s  205 (239)
                      |.|.|.+++..+++    .++. +.+|.+=+       +..+.++++++++..+++|+|.+.+..       |.+..+..
T Consensus       186 s~enR~Rf~~Eii~air~~vg~-d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~  264 (330)
T d1ps9a1         186 DYRNRMRFAVEVVRAVRERVGN-DFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVP  264 (330)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCS-SSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSC
T ss_pred             cHhhhhHHHHHHHHHHHHHcCC-CceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCc
Confidence            45777776665554    4544 56666533       355789999999999999999998742       22222212


Q ss_pred             HHHHHHHHHHHHhhCCCCcEEE
Q psy9602         206 VEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       206 ~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ......+.+.|-..+ ++||+.
T Consensus       265 ~~~~~~~~~~ik~~~-~~pvi~  285 (330)
T d1ps9a1         265 RGAFSWVTRKLKGHV-SLPLVT  285 (330)
T ss_dssp             TTTTHHHHHHHTTSC-SSCEEE
T ss_pred             chhHHHHHHHHHhhC-CceEEE
Confidence            223444556676777 899986

>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.79  E-value=1.5  Score=37.70  Aligned_cols=104  Identities=11%  Similarity=-0.070  Sum_probs=65.6

Q ss_pred             HHHHhhHHhhhcCCCCEEEe-ccccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCC
Q psy9602         115 CMLLVGITLRMAPIIDQMVN-GTTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLN  189 (239)
Q Consensus       115 ~~l~~~v~~~~~gg~glvV~-GstGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aG  189 (239)
                      +.|+.-+.....|| +++=- =....-.+...+||.+.+..+++.    ++. ++-..+++++.+.++.++.++.+.+.|
T Consensus        37 ~~~a~~~~e~~~GG-D~IKDDE~lad~~~~p~~eRv~~~~~av~~a~~eTG~-~~lYa~NiT~~~~~em~~ra~~~~e~g  114 (320)
T d5ruba1          37 KPFAEACHAFWLGG-DFIKNDEPQGNQPFAPLRDTIALVADAMRRAQDETGE-AKLFSANITADDPFEIIARGEYVLETF  114 (320)
T ss_dssp             HHHHHHHHHHTTTC-SEEECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSS-CCEEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-cceeeecccCCCHHHHHHHHHHHHHhc
Confidence            33333333345677 77622 234566788899999777666654    444 556677999889999999999998876


Q ss_pred             C-----CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602         190 V-----HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY  228 (239)
Q Consensus       190 A-----daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY  228 (239)
                      +     .++|+.. +...       ...++.+.+..+++||..+
T Consensus       115 g~~~~~~~lmi~~-~~~G-------~~~~~~lr~~~~~~~ih~H  150 (320)
T d5ruba1         115 GENASHVALLVDG-YVAG-------AAAITTARRRFPDNFLHYH  150 (320)
T ss_dssp             GGGGGGEEEEEET-TTSC-------HHHHHHHHHHCTTSCEEEE
T ss_pred             CccccceeEeecc-cccH-------HHHHHHHHHhccccccccc
Confidence            5     4556553 2111       2344556677656765443

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=86.75  E-value=4  Score=34.06  Aligned_cols=77  Identities=9%  Similarity=-0.022  Sum_probs=60.1

Q ss_pred             CcCCCHHHHHHHHHHHHHHhcCCCceEEEe----cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q psy9602         140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQ----IGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRD  215 (239)
Q Consensus       140 ~~sLT~eER~~li~~vve~~~G~rvpVIaG----Vg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~  215 (239)
                      ....|.||-..-.+.++..++  +.-+++.    ....+.+++++-++...+.|||++-+-.-        .++.+..+.
T Consensus        55 T~~vt~d~mi~h~~aV~rga~--~~~~i~dmPf~sy~~~~~~~~~a~~~~~~~gadavk~eg~--------~~~~~~i~~  124 (260)
T d1o66a_          55 TLPVSLRDMCYHTECVARGAK--NAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGG--------VWMAETTEF  124 (260)
T ss_dssp             STTCCHHHHHHHHHHHHHHCS--SSEEEEECCTTSSSSCHHHHHHHHHHHHHTTCSEEEEECS--------GGGHHHHHH
T ss_pred             ccccchhhhhhhhHHHHccCc--ceeeecchhhhhhcchhHHHHHHHHHHHHhhhhhccccch--------hhhhHHHHH
Confidence            346789999999999999876  4566654    45677889999888899999999988731        345667888


Q ss_pred             HHhhCCCCcEEEE
Q psy9602         216 VGEAAPATPLFYY  228 (239)
Q Consensus       216 VaeatpdLPIiLY  228 (239)
                      |.++  ++||+=+
T Consensus       125 l~~~--gIPV~gH  135 (260)
T d1o66a_         125 LQMR--GIPVCAH  135 (260)
T ss_dssp             HHHT--TCCEEEE
T ss_pred             HHHc--CCeeEee
Confidence            8886  7999854

>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-allose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=85.87  E-value=3.8  Score=31.83  Aligned_cols=62  Identities=13%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      ++-++.+-+..+....++.++.+...|+|++++.|... .     .....++.+.+.  ++||+.+|.+.
T Consensus        33 ~~~i~~~~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~-~-----~~~~~l~~~~~~--gipvv~~d~~~   94 (288)
T d1guda_          33 SVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS-V-----NLVMPVARAWKK--GIYLVNLDEKI   94 (288)
T ss_dssp             CEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSS-S-----TTHHHHHHHHHT--TCEEEEESSCC
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCCc-c-----hhhHHHHHHHhC--CCeEEEeCCCC
Confidence            45555556677888999999999999999999986433 2     234455677665  69999998754

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

Probab=85.57  E-value=2.5  Score=34.26  Aligned_cols=57  Identities=9%  Similarity=0.073  Sum_probs=47.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC-CCCcEEEE--eCC
Q psy9602         173 TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA-PATPLFYY--HIP  231 (239)
Q Consensus       173 ~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat-pdLPIiLY--N~P  231 (239)
                      .+.+..+++++.+.++|+|.+.+.......  ++.++.++++.|.+.. |++||-++  |..
T Consensus       158 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~--~P~~v~~li~~l~~~~~~~i~i~~H~Hnd~  217 (303)
T d1rqba2         158 HTVEGYVKLAGQLLDMGADSIALKDMAALL--KPQPAYDIIKAIKDTYGQKTQINLHCHSTT  217 (303)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEEETTCCC--CHHHHHHHHHHHHHHHCTTCCEEEEEBCTT
T ss_pred             CCHHHHHHHHHHHHhcCCcEEeecCccchh--hhHHHHHHHHHHHhhcCCcccceeccCchH
Confidence            357889999999999999999998877543  7899999999999876 67898877  544

>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Galdieria partita [TaxId: 83374]

Probab=85.49  E-value=2.4  Score=36.52  Aligned_cols=102  Identities=10%  Similarity=-0.030  Sum_probs=66.1

Q ss_pred             HHHhhHHhhhcCCCCEEEe-ccccCCcCCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHhCCC
Q psy9602         116 MLLVGITLRMAPIIDQMVN-GTTGEGVSMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAESLNV  190 (239)
Q Consensus       116 ~l~~~v~~~~~gg~glvV~-GstGE~~sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~aGA  190 (239)
                      .|+.-+.....||.+++=- =....-.+...+||...+..+++    .++. +.-..+++++.+.++.++.++.+++.|+
T Consensus        35 ~~a~~~~e~a~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~av~~a~~eTG~-~~~ya~NiT~~~~~~m~~ra~~~~~~g~  113 (328)
T d1bwva1          35 NYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGE-VKGHYLNVTAATMEEMYARANFAKELGS  113 (328)
T ss_dssp             HHHHHHHHHHHHTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHTS-CCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCCeeeCCccccCCCccchHHHHHHHHHHHHHHHHHhCC-eeEEEEeccCCCHHHHHHHHHHHHhcCC
Confidence            3333333445566666521 12356678889999977666665    4444 5667779999999999999999999999


Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602         191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL  225 (239)
Q Consensus       191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI  225 (239)
                      .++|+-.  .+..    ..+..+...++.. ++|+
T Consensus       114 ~~lm~~~--~~G~----~~l~~la~~~~~~-~l~i  141 (328)
T d1bwva1         114 VIIMIDL--VIGY----TAIQTMAKWARDN-DMIL  141 (328)
T ss_dssp             SEEEEEG--GGCH----HHHHHHHHHHHHT-TCEE
T ss_pred             eEEEEcc--ccch----HHHHHHHHHhhhc-Ceee
Confidence            9988863  2221    2444455555444 3443

>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Isocitrate lyase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.40  E-value=4.9  Score=35.78  Aligned_cols=93  Identities=16%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             eccccCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEecCC-------------------------------CCHHHHHH
Q psy9602         134 NGTTGEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQIGG-------------------------------TCFQEVVE  180 (239)
Q Consensus       134 ~GstGE~~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~-------------------------------~St~eAIe  180 (239)
                      +|+.+==..++.+|...-++.++.+.+  +...-||+=+-+                               .++++||+
T Consensus       191 CGH~~GK~lvp~~e~~~ki~Aa~~a~d~~~~~~~iiARTDA~~a~~i~s~~d~~D~~~i~g~rt~eG~y~~~~g~e~AI~  270 (418)
T d1f61a_         191 CGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIA  270 (418)
T ss_dssp             CSTTCBCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCSCSTTTGGGEEEEECTTSCEEECCSHHHHHH
T ss_pred             ccccCCcccCCHHHHHHHHHHHHHhhhcCCCCeEEEEEcchhhhcccccccccccccccccccCccccccccCCHHHHHH
Confidence            577777778899999888888775532  214455554333                               35789999


Q ss_pred             HHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC-CC
Q psy9602         181 LAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI-PM  232 (239)
Q Consensus       181 lar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~-P~  232 (239)
                      .++...+.|++.++..++    + +.+++..+-+.|....| ..++.||+ |.
T Consensus       271 Ra~aya~~gd~i~~e~~~----~-~~ee~~~f~~~v~~~~~-~~~l~~~~sPs  317 (418)
T d1f61a_         271 RAKAYAPFADLIWMETGT----P-DLEAARQFSEAVKAEYP-DQMLAYNCSPS  317 (418)
T ss_dssp             HHHHHGGGCSEEEECCSS----C-CHHHHHHHHHHHHTTCT-TCEEEEECCSS
T ss_pred             HHHhhhhccCeEEeccCC----C-CHHHHHHHHhhcCCCcc-hhhcccCcccC
Confidence            999999998777776654    3 78999999999988884 78888988 44

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=84.28  E-value=1.4  Score=37.51  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHHHHhcC-CCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC-C--CHHHHHHH
Q psy9602         144 TTAERKLNLEAWMTEAKT-HGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTP-A--SVEDLVDY  212 (239)
Q Consensus       144 T~eER~~li~~vve~~~G-~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~-~--s~e~iv~y  212 (239)
                      |.|-|.+++..+++.+.. ...|+++.++       ..+.++.+++++..+++|+|.+-+..-.+..+ .  .+.-...+
T Consensus       188 s~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~  267 (337)
T d1z41a1         188 SPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSF  267 (337)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHH
T ss_pred             hhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHH
Confidence            467776665555554322 0246666554       56899999999999999999998865443222 0  22333455


Q ss_pred             HHHHHhhCCCCcEEE
Q psy9602         213 LRDVGEAAPATPLFY  227 (239)
Q Consensus       213 f~~VaeatpdLPIiL  227 (239)
                      .+.|-+.+ ++||+.
T Consensus       268 ~~~ik~~~-~~pvi~  281 (337)
T d1z41a1         268 AEKIREQA-DMATGA  281 (337)
T ss_dssp             HHHHHHHH-CCEEEE
T ss_pred             HHHHHHhc-CceEEE
Confidence            56777777 899986

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=83.96  E-value=4.9  Score=31.10  Aligned_cols=77  Identities=10%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         149 KLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                      ..+.+-+.+.+..+++.+++ +-+..+....++.++.+...|+|++++.|...      ..+...++...+.  ++|++.
T Consensus        19 ~~~~~g~~~~a~~~G~~v~~~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~------~~~~~~~~~a~~~--gi~vv~   90 (316)
T d1tjya_          19 TSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSP------DGLCPALKRAMQR--GVKILT   90 (316)
T ss_dssp             HHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSS------STTHHHHHHHHHT--TCEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCeeeeccccc------chhhhhhhhhhcc--ccccee
Confidence            33434333333322456554 55667899999999999999999999997543      2345566666664  699999


Q ss_pred             EeCCCC
Q psy9602         228 YHIPMF  233 (239)
Q Consensus       228 YN~P~~  233 (239)
                      +|.+..
T Consensus        91 ~d~~~~   96 (316)
T d1tjya_          91 WDSDTK   96 (316)
T ss_dssp             ESSCCC
T ss_pred             cccccc
Confidence            998653

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.49  E-value=1.9  Score=35.93  Aligned_cols=86  Identities=13%  Similarity=0.189  Sum_probs=61.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecCC--------CCHHHHHHHHHHHHhCCCCEEEECC------CCCCCCCCH
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG--------TCFQEVVELAKHAESLNVHAVLCLP------ELFFTPASV  206 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~--------~St~eAIelar~A~~aGAdaVlV~P------P~y~~~~s~  206 (239)
                      ..|+.++|.++++.+.+.    ...|+.=+|.        .++++.|+.++...++||+.|++-.      .-.+.+ ..
T Consensus       109 ~~i~~~~~~~~I~~~~~~----G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEarEsg~~~Gi~~~-~g  183 (251)
T d1qwga_         109 SDISLEERNNAIKRAKDN----GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDK-EG  183 (251)
T ss_dssp             SCCCHHHHHHHHHHHHHT----TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCT-TS
T ss_pred             cCCCHHHHHHHHHHHHhC----CCEEeecccCCCCCCccccCHHHHHHHHHHHHHCCCceeEeehhhcCCccceecC-CC
Confidence            369999999999999875    3677765553        4678899999999999999999973      222332 11


Q ss_pred             HHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602         207 EDLVDYLRDVGEAAPATPLFYYHIPM  232 (239)
Q Consensus       207 e~iv~yf~~VaeatpdLPIiLYN~P~  232 (239)
                      +--.+-+..|++.. ++.-+++..|.
T Consensus       184 ~~r~~~i~~i~~~l-~~~kiifEAP~  208 (251)
T d1qwga_         184 KVKENELDVLAKNV-DINKVIFEAPQ  208 (251)
T ss_dssp             CBCHHHHHHHHTTS-CGGGEEEECCS
T ss_pred             ChhHHHHHHHHHhC-CcccEEEECCC
Confidence            11223445777777 68888888775

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.36  E-value=1.5  Score=36.31  Aligned_cols=83  Identities=10%  Similarity=0.052  Sum_probs=56.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC------------------
Q psy9602         141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT------------------  202 (239)
Q Consensus       141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~------------------  202 (239)
                      ...+.+.-.++++.+.+.+   ++||++=++.. ..+..++++.+++.|++++.+....+..                  
T Consensus       152 ~~~~~~~~~~i~~~v~~~~---~~pv~vKl~~~-~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~  227 (312)
T d1gtea2         152 CGQDPELVRNICRWVRQAV---QIPFFAKLTPN-VTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKR  227 (312)
T ss_dssp             GGGCHHHHHHHHHHHHHHC---SSCEEEEECSC-SSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTB
T ss_pred             hhhhHHHHHHHHHHHhhcc---CCceeeccccc-chhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccc
Confidence            3456677778888877765   57999866543 2345678899999999999987542100                  


Q ss_pred             --------CCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602         203 --------PASVEDLVDYLRDVGEAAPATPLFY  227 (239)
Q Consensus       203 --------~~s~e~iv~yf~~VaeatpdLPIiL  227 (239)
                              +.-..--+++.+.+.+..|++||+-
T Consensus       228 ~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~  260 (312)
T d1gtea2         228 TTYGGVSGTAIRPIALRAVTTIARALPGFPILA  260 (312)
T ss_dssp             BCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEE
T ss_pred             cccccccCcCcchhhHHHHHHHHHHcCCCcEEE
Confidence                    0012334788888888887799863

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=81.82  E-value=4.7  Score=32.29  Aligned_cols=74  Identities=16%  Similarity=0.051  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHhcCCCceEEE---ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC-CCCc
Q psy9602         149 KLNLEAWMTEAKTHGFTVMV---QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA-PATP  224 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIa---GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat-pdLP  224 (239)
                      .+.++.+.+..    ..+++   ..+..+.+...+.++.+.+.|++.+.+.......  +++++.++++.+.+.. |++|
T Consensus       122 ~~~~~~a~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~G~~--~P~~v~~~v~~l~~~~~~~~~  195 (289)
T d1nvma2         122 KQHIEYARNLG----MDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAM--SMNDIRDRMRAFKAVLKPETQ  195 (289)
T ss_dssp             HHHHHHHHHHT----CEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCC--CHHHHHHHHHHHHHHSCTTSE
T ss_pred             hHHHHHHHHhC----CceeeEeeeccccCchhhhHHHHhhccccceeeeecchhhcc--cchhHHHHHHHHHHHhccccc
Confidence            44555555442    33333   5567788889999999999999999888766543  7899999999998876 5677


Q ss_pred             EEEE
Q psy9602         225 LFYY  228 (239)
Q Consensus       225 IiLY  228 (239)
                      +-++
T Consensus       196 i~~H  199 (289)
T d1nvma2         196 VGMH  199 (289)
T ss_dssp             EEEE
T ss_pred             ceee
Confidence            7654

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=81.74  E-value=10  Score=30.62  Aligned_cols=89  Identities=15%  Similarity=0.007  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCC-CCEEEE--CCCCCCCC---C-CHHHHHHHHHH
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLN-VHAVLC--LPELFFTP---A-SVEDLVDYLRD  215 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aG-AdaVlV--~PP~y~~~---~-s~e~iv~yf~~  215 (239)
                      ...++..+-+......... +.||++.+++.+..+-.+.++..++++ +|++-+  .-|.....   . +.+.+.+..+.
T Consensus        74 ~g~~~~~~~~~~~~~~~~~-~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~  152 (311)
T d1juba_          74 LGFDYYLDYVLKNQKENAQ-EGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKE  152 (311)
T ss_dssp             SCHHHHHHHHHHHHHHTCS-SSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHhhhhccc-CCCceeeccccccchhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHH
Confidence            3445555444444444333 689999999999999999999988887 777533  33443211   1 57889999999


Q ss_pred             HHhhCCCCcEEEEeCCCC
Q psy9602         216 VGEAAPATPLFYYHIPMF  233 (239)
Q Consensus       216 VaeatpdLPIiLYN~P~~  233 (239)
                      +.+.. +.|+++=--|..
T Consensus       153 v~~~~-~~pv~vKl~p~~  169 (311)
T d1juba_         153 VFTFF-TKPLGVKLPPYF  169 (311)
T ss_dssp             HTTTC-CSCEEEEECCCC
T ss_pred             hhccc-ccceeecccccc
Confidence            99998 899999887754

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.84  E-value=1.1  Score=37.67  Aligned_cols=57  Identities=12%  Similarity=0.027  Sum_probs=43.2

Q ss_pred             EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602         133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP  197 (239)
Q Consensus       133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P  197 (239)
                      +.|.||+-..+.. +-.+.++.+.+..   ++||++|.|=.+.+++.+    +.+.|||+++|-.
T Consensus       179 ~~GvTG~~~~~~~-~~~~~i~~ik~~t---~~Pv~vGFGI~~~e~v~~----~~~~~ADGvIVGS  235 (267)
T d1qopa_         179 RSGVTGAENRGAL-PLHHLIEKLKEYH---AAPALQGFGISSPEQVSA----AVRAGAAGAISGS  235 (267)
T ss_dssp             SSSCCCSSSCC---CCHHHHHHHHHTT---CCCEEEESSCCSHHHHHH----HHHTTCSEEEECH
T ss_pred             ccccCCcccccch-hHHHHHHHHhhhc---cCCceeecccCCHHHHHH----HHhcCCCEEEECH
Confidence            7899999877754 4567777777765   589999999888776543    4457999999984

>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Glucose-resistance amylase regulator CcpA, C-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=80.77  E-value=5.1  Score=30.83  Aligned_cols=80  Identities=8%  Similarity=0.056  Sum_probs=56.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602         143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA  222 (239)
Q Consensus       143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd  222 (239)
                      |+..=..++++-+.+.+...+..+++..+..+.+.-.+......+.++|++++.++..    ++. ..   ..+.+ . +
T Consensus        13 l~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~e~~~i~~~~~~~vdgii~~~~~~----~~~-~~---~~l~~-~-~   82 (275)
T d2nzug1          13 ISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV----TEE-HV---EELKK-S-P   82 (275)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEECCSCC----CHH-HH---HHHHH-C-S
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHhcCCceeeccccch----hhH-HH---HHHhh-c-c
Confidence            4555555666666666555467888888888998889999999999999999997543    222 22   33444 4 6


Q ss_pred             CcEEEEeCCC
Q psy9602         223 TPLFYYHIPM  232 (239)
Q Consensus       223 LPIiLYN~P~  232 (239)
                      +|+++.|.+.
T Consensus        83 ~pvv~~~~~~   92 (275)
T d2nzug1          83 VPVVLAASIE   92 (275)
T ss_dssp             SCEEEESCCC
T ss_pred             cccccccccc
Confidence            9999998753

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.75  E-value=1.4  Score=33.84  Aligned_cols=54  Identities=9%  Similarity=0.008  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH
Q psy9602         149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL  213 (239)
Q Consensus       149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf  213 (239)
                      .+++..+.+.+   ++|||++-|=.+.+++.+    +.++|||++++-... .   +++++.+.|
T Consensus       164 ~~~i~~~~~~~---~iPVia~GGI~t~~d~~~----~~~~GAdgV~iGsAi-~---rp~~~~~~f  217 (222)
T d1y0ea_         164 FQFLKDVLQSV---DAKVIAEGNVITPDMYKR----VMDLGVHCSVVGGAI-T---RPKEITKRF  217 (222)
T ss_dssp             HHHHHHHHHHC---CSEEEEESSCCSHHHHHH----HHHTTCSEEEECHHH-H---CHHHHHHHH
T ss_pred             HHHHHHHHhcC---CCcEEEeCCCCCHHHHHH----HHHcCCCEEEEchhh-c---CHHHHHHHH
Confidence            45566665554   689998666555665554    456899999999743 2   346655544

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.21  E-value=1.6  Score=36.46  Aligned_cols=134  Identities=11%  Similarity=-0.067  Sum_probs=81.2

Q ss_pred             HHHhhhhhccccccccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCC-CCEEEeccccCCcCCCHHHHHHHH
Q psy9602          74 RKRRRKRLRNAHGEVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPI-IDQMVNGTTGEGVSMTTAERKLNL  152 (239)
Q Consensus        74 ~~~~~~~~~~~~p~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg-~glvV~GstGE~~sLT~eER~~li  152 (239)
                      +=.+.+.++..-|--..+..+++.+.++...+-|-.+..-...+   +....+.+ .++.|.           ..+..+ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~la~~ID~TlL~p~~t~e~i~~l---c~~A~~~~~aaVcV~-----------P~~v~~-   77 (251)
T d1o0ya_          13 AVAKYREFYEFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKKL---CLEARENRFHGVCVN-----------PCYVKL-   77 (251)
T ss_dssp             HHHHHHHHCCCCCSSSCCCHHHHHHHEEEEECCTTCCHHHHHHH---HHHHHHHTCSEEEEC-----------GGGHHH-
T ss_pred             HHHHhhhcccccchhhhhCHHHHHHhccccCCCCCCCHHHHHHH---HHHHhhcCceEEEEC-----------HHHHHH-
Confidence            33333334443343344566677788887765554444432222   33333333 345565           233444 


Q ss_pred             HHHHHHhcCCCceEE--Eec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHhhCCCCc
Q psy9602         153 EAWMTEAKTHGFTVM--VQI--GGTCFQEVVELAKHAESLNVHAVLCLPELFF-TPASVEDLVDYLRDVGEAAPATP  224 (239)
Q Consensus       153 ~~vve~~~G~rvpVI--aGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y~-~~~s~e~iv~yf~~VaeatpdLP  224 (239)
                        +.+.++++.+.|.  +|.  |..+++.-+..++.|.+.|||-+-+.+|+.+ +....+.+.+-.+.+.+++++.+
T Consensus        78 --a~~~L~gs~v~v~tVigFP~G~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~  152 (251)
T d1o0ya_          78 --AREELEGTDVKVVTVVGFPLGANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKV  152 (251)
T ss_dssp             --HHHHHTTSCCEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSE
T ss_pred             --HHHHhcCCCceEEeeccCCCCCCcHHHHHHHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccc
Confidence              4444444344443  344  6778888899999999999999988887742 22278889999999988875444

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=80.20  E-value=6.7  Score=31.90  Aligned_cols=96  Identities=14%  Similarity=0.110  Sum_probs=62.2

Q ss_pred             EEEeccccCC--cCCCHHHHHHHHHHHHHHh------------------------cCCCceEEEecC----CCCHHHHHH
Q psy9602         131 QMVNGTTGEG--VSMTTAERKLNLEAWMTEA------------------------KTHGFTVMVQIG----GTCFQEVVE  180 (239)
Q Consensus       131 lvV~GstGE~--~sLT~eER~~li~~vve~~------------------------~G~rvpVIaGVg----~~St~eAIe  180 (239)
                      ++.+-+..|+  +.++.++|.++++.+++.-                        .. ++.||+..-    ..+.++..+
T Consensus        78 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~-~~~vI~S~Hdf~~TP~~~~l~~  156 (252)
T d1gqna_          78 LFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAH-NVYVVMSNHDFHQTPSAEEMVS  156 (252)
T ss_dssp             EEECCBGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHT-TCEEEEEEEESSCCCCHHHHHH
T ss_pred             EEEEechhhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcC-CCeEEEEecCCCCCCCHHHHHH
Confidence            4455555553  3567777777777776531                        12 456776442    345689999


Q ss_pred             HHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH---HHHHhhCCCCcEEEEeCC
Q psy9602         181 LAKHAESLNVHAVLCLPELFFTPASVEDLVDYL---RDVGEAAPATPLFYYHIP  231 (239)
Q Consensus       181 lar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf---~~VaeatpdLPIiLYN~P  231 (239)
                      +.+.+.+.|||.+=+....   . +.++..+.+   ..+.+..++.|++.++.=
T Consensus       157 ~~~~m~~~gaDivKia~~a---~-~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG  206 (252)
T d1gqna_         157 RLRKMQALGADIPKIAVMP---Q-SKHDVLTLLTATLEMQQHYADRPVITMSMA  206 (252)
T ss_dssp             HHHHHHHTTCSEEEEEECC---S-SHHHHHHHHHHHHHHHHHTCSSCCEEEECT
T ss_pred             HHHHHHHhCCCeEEEEecC---C-CHHHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence            9999999999988776432   2 555555554   444445458999999873