Psyllid ID: psy961

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MLTDRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVTSIVY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mltdrvsapythltRWYGHVTELKKKQDADVNAALDQaskvkvspidsWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIkpvmadgslIEKANAARTLVTSIVY
Flexible Loop (DISEMBL)
mltdrvsapythltrwYGHVTELKKKQDADVNAALdqaskvkvspidSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIekanaartlvTSIVY
Low Complexity Region (SEG)
MLTDRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVTSIVY
Disordered region (IsUnstruct)
********PYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVT****
Disordered Region (DISOPRED)
*LTDRVSAPYTHLTRWYGHVTELKKKQDADVNA*******VKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVTSIVY
Disordered Region (DISEMBL)
MLTDRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVTSIVY
Disordered Region (DISPRO)
*LTDRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVTSIVY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLTDRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVTSIVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q04462	1264	Valine--tRNA ligase OS=Ra	yes	N/A	0.618	0.057	0.520	7e-16
P26640	1264	Valine--tRNA ligase OS=Ho	yes	N/A	0.618	0.057	0.506	1e-15
Q9Z1Q9	1263	Valine--tRNA ligase OS=Mu	yes	N/A	0.618	0.057	0.493	2e-15
P49696	1217	Valine--tRNA ligase OS=Ta	N/A	N/A	0.542	0.052	0.558	4e-15
Q9U1Q4	1050	Valine--tRNA ligase OS=Ca	yes	N/A	0.457	0.051	0.555	6e-13
Q3U2A8	1060	Valine--tRNA ligase, mito	no	N/A	0.466	0.051	0.527	1e-12
Q6MG21	1065	Valine--tRNA ligase, mito	no	N/A	0.466	0.051	0.527	2e-12
Q5ST30	1063	Valine--tRNA ligase, mito	no	N/A	0.457	0.050	0.537	4e-12
O75005	980	Valine--tRNA ligase OS=Sc	yes	N/A	0.601	0.072	0.422	9e-11
Q767M3	1062	Valine--tRNA ligase, mito	no	N/A	0.466	0.051	0.490	1e-10

>sp|Q04462|SYVC_RAT Valine--tRNA ligase OS=Rattus norvegicus GN=Vars PE=2 SV=2

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 49/73 (67%)

Query: 44   SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
            S +D WI SRLA+AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct: 981  SLVDRWIRSRLAEAVRLSNEGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 1040

Query: 104  EKANAARTLVTSI 116
                A +TL T +
Sbjct: 1041 AADCARQTLYTCL 1053

Rattus norvegicus (taxid: 10116)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 9

>sp|P26640|SYVC_HUMAN Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query: 44   SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
            S +D WI SRL +AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct: 981  SLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 1040

Query: 104  EKANAARTLVTSI 116
                A +TL T +
Sbjct: 1041 AAECARQTLYTCL 1053

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9Z1Q9|SYVC_MOUSE Valine--tRNA ligase OS=Mus musculus GN=Vars PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 48/73 (65%)

Query: 44   SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
            S +D WI SRL +AV   N+ FQ Y+F  +T+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct: 980  SLVDRWIRSRLTEAVRLSNEGFQAYDFPAITTAQYSFWLYELCDVYLECLKPVLNGVDQV 1039

Query: 104  EKANAARTLVTSI 116
                A +TL T +
Sbjct: 1040 AAECARQTLYTCL 1052

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|P49696|SYVC_TAKRU Valine--tRNA ligase OS=Takifugu rubripes GN=vars PE=3 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 47  DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM----ADGSL 102
           D WILSRL+ AVA C+ AF+ Y+F  +T+A YN WLYELCDVYLE +KPV      DGS 
Sbjct: 931 DRWILSRLSTAVAQCDAAFRTYDFPAITTAIYNFWLYELCDVYLESVKPVFIKAKEDGSC 990

Query: 103 IEKANAAR 110
              A   R
Sbjct: 991 ERPAAVCR 998

Takifugu rubripes (taxid: 31033)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9U1Q4|SYV_CAEEL Valine--tRNA ligase OS=Caenorhabditis elegans GN=vrs-2 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 37/54 (68%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM 97
           +P D WILSRLA AV   N+A + Y F   T+  YN WLY+ CDVY+E IKPV+
Sbjct: 762 TPTDLWILSRLAKAVKETNEALKAYNFTQATTVTYNFWLYDFCDVYVETIKPVL 815

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q3U2A8|SYVM_MOUSE Valine--tRNA ligase, mitochondrial OS=Mus musculus GN=Vars2 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
           SP+D+WILSRLA A + C + F   E + VT   Y+ WL+ LCDVYLE +KPV++
Sbjct: 777 SPMDAWILSRLAFAASECERGFLSRELSLVTHTLYHFWLHNLCDVYLEAVKPVLS 831

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q6MG21|SYVM_RAT Valine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Vars2 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
           SP+D+WILSRLA A   C + F   E + VT   Y+ WL+ LCDVYLE +KPV++
Sbjct: 777 SPMDAWILSRLAFAANECERGFLSRELSLVTHTLYHFWLHNLCDVYLEAVKPVLS 831

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q5ST30|SYVM_HUMAN Valine--tRNA ligase, mitochondrial OS=Homo sapiens GN=VARS2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 38/54 (70%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM 97
           SP+D+WILSRLA A   C + F   E + VT A ++ WL+ LCDVYLE +KPV+
Sbjct: 776 SPMDAWILSRLALAAQECERGFLTRELSLVTHALHHFWLHNLCDVYLEAVKPVL 829

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|O75005|SYV_SCHPO Valine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vas2 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
           S ++ WI  RL  A A  NK  ++  F   TSA +  WLYELCDVY+E  K +++DG+ +
Sbjct: 771 SLVEKWIFHRLNIAAAAMNKNMEEMNFLQATSAVHQFWLYELCDVYIENSKYLLSDGTEV 830

Query: 104 EKANAARTLVT 114
           ++ +A +TL T
Sbjct: 831 QQESAKQTLYT 841

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q767M3|SYVM_PIG Valine--tRNA ligase, mitochondrial OS=Sus scrofa GN=VARS2 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
           SP+D+WILS LA     C + F   E   VT A ++ WL+ LCDVYLE +KPV++
Sbjct: 777 SPMDAWILSCLARTAQECERGFLTRELALVTHALHHFWLHNLCDVYLEAVKPVLS 831

Sus scrofa (taxid: 9823)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
242022374	1145	Valyl-tRNA synthetase, putative [Pedicul	0.932	0.096	0.454	3e-21
157105567	1048	valyl-trna synthetase [Aedes aegypti] gi	0.618	0.069	0.602	2e-18
328787158	1146	PREDICTED: valyl-tRNA synthetase isoform	0.906	0.093	0.398	4e-18
380016086	1157	PREDICTED: valine--tRNA ligase-like [Api	0.906	0.092	0.374	9e-18
194754701	1048	GF11945 [Drosophila ananassae] gi|190620	0.677	0.076	0.530	1e-17
194883432	1049	GG20362 [Drosophila erecta] gi|190658992	0.644	0.072	0.526	1e-17
195485094	1049	Aats-val [Drosophila yakuba] gi|19417704	0.644	0.072	0.526	1e-17
170049395	1038	valyl-tRNA synthetase [Culex quinquefasc	0.618	0.070	0.561	2e-17
391346451	1036	PREDICTED: valine--tRNA ligase-like [Met	0.627	0.071	0.554	2e-17
195380978	1048	GJ20865 [Drosophila virilis] gi|19414403	0.618	0.069	0.547	3e-17

>gi|242022374|ref|XP_002431615.1| Valyl-tRNA synthetase, putative [Pediculus humanus corporis] gi|212516923|gb|EEB18877.1| Valyl-tRNA synthetase, putative [Pediculus humanus corporis]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 74/121 (61%), Gaps = 11/121 (9%)

Query: 2    LTDRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKV--------SPIDSWILSR 53
            +TD +++ + H+TRW+ H+  L+   D          S+ +V        SP+D WILSR
Sbjct: 887  ITD-LNSEFPHVTRWWRHIDSLR--LDPMFRRCFLNDSEGRVFYKVLSDASPMDRWILSR 943

Query: 54   LADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLV 113
            L+ AV  CN  F  Y+F  VT+ACYNLWLYELCDVYLEC+KPVM +G   E +   +TL 
Sbjct: 944  LSAAVEACNSGFAAYDFPKVTTACYNLWLYELCDVYLECLKPVMYNGQPNEISAGKQTLY 1003

Query: 114  T 114
            T
Sbjct: 1004 T 1004

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105567|ref|XP_001648925.1| valyl-trna synthetase [Aedes aegypti] gi|108880047|gb|EAT44272.1| AAEL004327-PA [Aedes aegypti]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 52/73 (71%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
           S ID WILSRLA+ +   NK F+KYEF   TSACY  WLY+LCDVYLEC+KPV   GS  
Sbjct: 768 SNIDRWILSRLANCIDVSNKGFEKYEFAQTTSACYEFWLYDLCDVYLECLKPVFQSGSEE 827

Query: 104 EKANAARTLVTSI 116
            KA+A +TL T +
Sbjct: 828 AKASARKTLYTCL 840

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787158|ref|XP_395202.3| PREDICTED: valyl-tRNA synthetase isoform 1 [Apis mellifera]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 16/123 (13%)

Query: 10  YTHLTRWYGHVTELKKKQDADVNAAL------------DQASKVKV----SPIDSWILSR 53
           Y HL RWY H+T    ++ +  +A              D  ++ K     S IDSW+LSR
Sbjct: 822 YPHLHRWYKHMTSYNNQERSMFHAEKGKILSQCGCKIHDHNNRKKQLHYESNIDSWMLSR 881

Query: 54  LADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLV 113
           ++ A+ TCN+A  +Y+F T T+ACYNLWLY+LCD+YLE +KPV     +  K  A +TL 
Sbjct: 882 VSYAIKTCNEAMTQYDFPTATTACYNLWLYDLCDIYLEYLKPVFQSDDVERKYAAKKTLF 941

Query: 114 TSI 116
            ++
Sbjct: 942 KTL 944

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016086|ref|XP_003692022.1| PREDICTED: valine--tRNA ligase-like [Apis florea]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 24/131 (18%)

Query: 10  YTHLTRWYGHVTELKKKQDADVNAAL------------DQASKVKV------------SP 45
           Y HL RWY H+     ++ +  +A              D   K +V            S 
Sbjct: 822 YPHLRRWYKHIASYNNQEKSMFHAEKGKILSQCGCKIHDHNRKKQVNYIDLLIIINDKSN 881

Query: 46  IDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEK 105
           IDSW+LSR++ A+ TCN+A  +Y+F T T+ACYNLWLY+LCD+YLE +KPV     +  K
Sbjct: 882 IDSWMLSRVSYAIKTCNEAMTQYDFPTATTACYNLWLYDLCDIYLEYLKPVFQSDDIERK 941

Query: 106 ANAARTLVTSI 116
             A +TL  ++
Sbjct: 942 YAAKKTLFKTL 952

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194754701|ref|XP_001959633.1| GF11945 [Drosophila ananassae] gi|190620931|gb|EDV36455.1| GF11945 [Drosophila ananassae]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 38  ASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM 97
           AS+V V+ +D+WILSRL+ A+  CN+ F+ Y+F   TSACY  WLY+LCDVYLEC+KP+ 
Sbjct: 767 ASEV-VNQMDAWILSRLSAAIEACNQGFETYDFAAATSACYAFWLYDLCDVYLECLKPIF 825

Query: 98  ADGSLIEKANAARTLVTSIVY 118
             GS  ++A A RTL   + Y
Sbjct: 826 QSGSEQQQAAARRTLYVCLDY 846

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194883432|ref|XP_001975805.1| GG20362 [Drosophila erecta] gi|190658992|gb|EDV56205.1| GG20362 [Drosophila erecta]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 53/76 (69%)

Query: 43  VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSL 102
           ++ +D+WILSRLA A+  CN  F+ Y+F   TSACY  WLY+LCDVYLEC+KP+   GS 
Sbjct: 772 INQMDAWILSRLAAAIEACNTGFESYDFAAATSACYAFWLYDLCDVYLECLKPIFQSGSE 831

Query: 103 IEKANAARTLVTSIVY 118
            ++A A RTL   + Y
Sbjct: 832 EQQAAARRTLYVCLDY 847

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195485094|ref|XP_002090947.1| Aats-val [Drosophila yakuba] gi|194177048|gb|EDW90659.1| Aats-val [Drosophila yakuba]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 53/76 (69%)

Query: 43  VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSL 102
           ++ +D+WILSRLA A+  CN  F+ Y+F   TSACY  WLY+LCDVYLEC+KP+   GS 
Sbjct: 772 INQMDAWILSRLAAAIEACNTGFESYDFAAATSACYAFWLYDLCDVYLECLKPIFQSGSE 831

Query: 103 IEKANAARTLVTSIVY 118
            ++A A RTL   + Y
Sbjct: 832 EQQAAARRTLYVCLDY 847

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170049395|ref|XP_001855875.1| valyl-tRNA synthetase [Culex quinquefasciatus] gi|167871251|gb|EDS34634.1| valyl-tRNA synthetase [Culex quinquefasciatus]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 51/73 (69%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
           S ID WILSRLA+ +   NK F+KYEF   T+ACY+ WLY+LCD+YLEC+KP    GS  
Sbjct: 756 STIDQWILSRLANCIDVSNKGFEKYEFALATNACYDFWLYDLCDIYLECLKPTFQSGSEE 815

Query: 104 EKANAARTLVTSI 116
            K+ A RTL T +
Sbjct: 816 AKSAARRTLYTCL 828

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391346451|ref|XP_003747487.1| PREDICTED: valine--tRNA ligase-like [Metaseiulus occidentalis]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/74 (55%), Positives = 52/74 (70%)

Query: 39  SKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
           +KV  SPID WILSRL  A A   K F +Y+F  +T+ACY+ WLY+LCD+YLE +KPV  
Sbjct: 752 AKVSRSPIDKWILSRLTLACANAQKGFSEYDFPAITTACYSFWLYDLCDLYLESLKPVFQ 811

Query: 99  DGSLIEKANAARTL 112
            GS+  K  AA+TL
Sbjct: 812 SGSIEAKTAAAQTL 825

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195380978|ref|XP_002049233.1| GJ20865 [Drosophila virilis] gi|194144030|gb|EDW60426.1| GJ20865 [Drosophila virilis]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query: 46  IDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEK 105
           +D+WILSRLA  + TCN  F  Y+F  VTSACY  WLY++CDVYLEC+KP+   GS  ++
Sbjct: 774 MDAWILSRLAATIETCNAGFDTYDFAAVTSACYAFWLYDVCDVYLECLKPIFQSGSAEQQ 833

Query: 106 ANAARTLVTSIVY 118
           A A RTL   + Y
Sbjct: 834 AAARRTLYVCLDY 846

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
FB|FBgn0027079	1049	Aats-val "Valyl-tRNA synthetas	0.686	0.077	0.481	1.1e-17
ZFIN|ZDB-GENE-010601-1	1264	vars "valyl-tRNA synthetase" [	0.593	0.055	0.547	5.3e-15
UNIPROTKB|E7EVJ6	676	VARS "Valine--tRNA ligase" [Ho	0.618	0.107	0.506	3.2e-14
RGD|3950	1264	Vars "valyl-tRNA synthetase" [	0.618	0.057	0.520	3.8e-14
UNIPROTKB|E1BLV6	1001	VARS "Uncharacterized protein"	0.618	0.072	0.506	5.8e-14
UNIPROTKB|H0Y4A6	1183	VARS "Valine--tRNA ligase" [Ho	0.618	0.061	0.506	7.2e-14
UNIPROTKB|B0V043	1264	VARS "Valine--tRNA ligase" [Ho	0.618	0.057	0.506	7.8e-14
UNIPROTKB|P26640	1264	VARS "Valine--tRNA ligase" [Ho	0.618	0.057	0.506	7.8e-14
MGI|MGI:90675	1263	Vars "valyl-tRNA synthetase" [	0.618	0.057	0.493	1e-13
UNIPROTKB|E2RTJ7	1264	VARS "Uncharacterized protein"	0.618	0.057	0.506	1.3e-13

FB|FBgn0027079 Aats-val "Valyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 228 (85.3 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 39/81 (48%), Positives = 54/81 (66%)

Query:    38 ASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM 97
             ++   ++ +D+WILSRLA A+  CN  F+ Y+F   TSACY  WLY+LCDVYLEC+KP+ 
Sbjct:   767 SASAAINQMDAWILSRLAAAIEACNTGFESYDFAAATSACYAFWLYDLCDVYLECLKPIF 826

Query:    98 ADGSLIEKANAARTLVTSIVY 118
               GS  ++  A RTL   + Y
Sbjct:   827 QSGSEEQQTAARRTLYVCLDY 847

GO:0004832 "valine-tRNA ligase activity" evidence=ISS

GO:0006438 "valyl-tRNA aminoacylation" evidence=ISS

GO:0004818 "glutamate-tRNA ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-010601-1 vars "valyl-tRNA synthetase" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 40/73 (54%), Positives = 52/73 (71%)

Query:    47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA--DGSLIE 104
             D WILSRL+ AVA C+  F+ Y+F T+T+A YN WLYELCDVYLEC+KPV +  D    +
Sbjct:   980 DRWILSRLSAAVALCDGGFKAYDFPTITTAIYNFWLYELCDVYLECVKPVFSRTDSKGQK 1039

Query:   105 KANAAR-TLVTSI 116
             +A+  R TL T +
Sbjct:  1040 QADVCRQTLYTCL 1052

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004832 "valine-tRNA ligase activity" evidence=IEA

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|E7EVJ6 VARS "Valine--tRNA ligase" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query:    44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
             S +D WI SRL +AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct:   393 SLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 452

Query:   104 EKANAARTLVTSI 116
                 A +TL T +
Sbjct:   453 AAECARQTLYTCL 465

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004832 "valine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

RGD|3950 Vars "valyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 38/73 (52%), Positives = 49/73 (67%)

Query:    44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
             S +D WI SRLA+AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct:   981 SLVDRWIRSRLAEAVRLSNEGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 1040

Query:   104 EKANAARTLVTSI 116
                 A +TL T +
Sbjct:  1041 AADCARQTLYTCL 1053

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004832 "valine-tRNA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|E1BLV6 VARS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 5.8e-14, P = 5.8e-14
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query:    44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
             S +D WI SRL +AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct:   718 SLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 777

Query:   104 EKANAARTLVTSI 116
                 A +TL T +
Sbjct:   778 AAECARQTLYTCL 790

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004832 "valine-tRNA ligase activity" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|H0Y4A6 VARS "Valine--tRNA ligase" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 7.2e-14, P = 7.2e-14
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query:    44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
             S +D WI SRL +AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct:   900 SLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 959

Query:   104 EKANAARTLVTSI 116
                 A +TL T +
Sbjct:   960 AAECARQTLYTCL 972

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004832 "valine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|B0V043 VARS "Valine--tRNA ligase" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 7.8e-14, P = 7.8e-14
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query:    44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
             S +D WI SRL +AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct:   981 SLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 1040

Query:   104 EKANAARTLVTSI 116
                 A +TL T +
Sbjct:  1041 AAECARQTLYTCL 1053

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004832 "valine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|P26640 VARS "Valine--tRNA ligase" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 7.8e-14, P = 7.8e-14
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query:    44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
             S +D WI SRL +AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct:   981 SLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 1040

Query:   104 EKANAARTLVTSI 116
                 A +TL T +
Sbjct:  1041 AAECARQTLYTCL 1053

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006414 "translational elongation" evidence=NAS

GO:0004832 "valine-tRNA ligase activity" evidence=IDA

GO:0005622 "intracellular" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:90675 Vars "valyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 192 (72.6 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/73 (49%), Positives = 48/73 (65%)

Query:    44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
             S +D WI SRL +AV   N+ FQ Y+F  +T+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct:   980 SLVDRWIRSRLTEAVRLSNEGFQAYDFPAITTAQYSFWLYELCDVYLECLKPVLNGVDQV 1039

Query:   104 EKANAARTLVTSI 116
                 A +TL T +
Sbjct:  1040 AAECARQTLYTCL 1052

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004832 "valine-tRNA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|E2RTJ7 VARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query:    44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
             S +D WI SRL +AV   N+ FQ Y+F  VT+A Y+ WLYELCDVYLEC+KPV+     +
Sbjct:   981 SLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGMDHV 1040

Query:   104 EKANAARTLVTSI 116
                 A +TL T +
Sbjct:  1041 VAECARQTLYTCL 1053

GO:0006438 "valyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004832 "valine-tRNA ligase activity" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q04462	SYVC_RAT	6, ., 1, ., 1, ., 9	0.5205	0.6186	0.0577	yes	N/A
P26640	SYVC_HUMAN	6, ., 1, ., 1, ., 9	0.5068	0.6186	0.0577	yes	N/A
Q9U1Q4	SYV_CAEEL	6, ., 1, ., 1, ., 9	0.5555	0.4576	0.0514	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
cd07962	135	cd07962, Anticodon_Ia_Val, Anticodon-binding domai	6e-26
PTZ00419	995	PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro	7e-21
pfam08264	148	pfam08264, Anticodon_1, Anticodon-binding domain o	5e-17
COG0525	877	COG0525, ValS, Valyl-tRNA synthetase [Translation,	5e-17
TIGR00422	861	TIGR00422, valS, valyl-tRNA synthetase	3e-15
PRK05729	874	PRK05729, valS, valyl-tRNA synthetase; Reviewed	4e-14
PLN02381	1066	PLN02381, PLN02381, valyl-tRNA synthetase	4e-11
PRK13208	800	PRK13208, valS, valyl-tRNA synthetase; Reviewed	5e-10
PRK14900	1052	PRK14900, valS, valyl-tRNA synthetase; Provisional	4e-08
cd07960	180	cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding d	2e-07
PRK05743	912	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe	3e-06
COG0060	933	COG0060, IleS, Isoleucyl-tRNA synthetase [Translat	4e-05
TIGR00392	861	TIGR00392, ileS, isoleucyl-tRNA synthetase	1e-04

>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases

 Score = 93.8 bits (234), Expect = 6e-26
 Identities = 26/71 (36%), Positives = 34/71 (47%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
           S  D WILSRL   V    +A + Y F+   +A Y  +  + CD YLE +KP +      
Sbjct: 41  SLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLELVKPRLYGEDEE 100

Query: 104 EKANAARTLVT 114
           EK  A  TL  
Sbjct: 101 EKKAARATLYY 111

This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. Length = 135

>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional

 Score = 85.8 bits (213), Expect = 7e-21
 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 25  KKQDADVNAALDQASKVKVSP-IDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLY 83
            K     N+ L + + V+  P  D WIL RL  A+    + F++Y+F+  T A YN WLY
Sbjct: 688 LKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLY 747

Query: 84  ELCDVYLECIKPVMADGSLIEKAN-AARTLVTSI 116
           ELCDVYLE IKP ++  S  E+   A   L T +
Sbjct: 748 ELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVL 781

Length = 995

>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA

 Score = 71.3 bits (175), Expect = 5e-17
 Identities = 24/70 (34%), Positives = 34/70 (48%)

Query: 47  DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKA 106
           D WILSRL   +    +A++KY FNT  SA Y  +  +L D YLE  K  +   +     
Sbjct: 1   DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDR 60

Query: 107 NAARTLVTSI 116
           +A   L   +
Sbjct: 61  SAQTVLYEVL 70

This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA. Length = 148

>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 75.0 bits (185), Expect = 5e-17
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 35  LDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK 94
            D    + +S  D WILSRL + V    +A   Y F+    A Y     + CD YLE  K
Sbjct: 595 PDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAK 654

Query: 95  PVMADGSLIEKANAARTLVT 114
           P +  G   EK  A  TL  
Sbjct: 655 PRLYGGEE-EKRAARATLYY 673

Length = 877

>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase

 Score = 70.1 bits (172), Expect = 3e-15
 Identities = 26/75 (34%), Positives = 36/75 (48%)

Query: 40  KVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD 99
           + K+S  D WILS+L   +    KA  KY F     A Y     + CD Y+E +K  + +
Sbjct: 600 EEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYN 659

Query: 100 GSLIEKANAARTLVT 114
           G+  EK  A  TL  
Sbjct: 660 GNEAEKKAARDTLYY 674

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861

>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed

 Score = 66.7 bits (164), Expect = 4e-14
 Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
           S  D WILSRL   VA   +A  KY F+    A Y     E CD YLE  KPV+ +    
Sbjct: 600 SLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQEA--- 656

Query: 104 EKANAARTLVT 114
            K     TL  
Sbjct: 657 AKRATRATLAY 667

Length = 874

>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase

 Score = 58.4 bits (141), Expect = 4e-11
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 45  PIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA-DGSLI 103
               WILS L  A++    +   YEF+   S  Y+ W Y+ CDV++E IKP  A D    
Sbjct: 774 FSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEF 833

Query: 104 EKANAA 109
               AA
Sbjct: 834 ASERAA 839

Length = 1066

>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed

 Score = 54.8 bits (133), Expect = 5e-10
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 45  PIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP-VMADGSLI 103
           P+D WIL++LA  V    +A + Y+F        + + +  CD YLE +K     +    
Sbjct: 610 PLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEE 669

Query: 104 EKANAARTLVTSI 116
           E+ +A  TL T +
Sbjct: 670 EQKSARYTLYTVL 682

Length = 800

>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 39  SKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
           +++  +P D WIL+RL  AV    +A + + FN   +A Y    +ELCD Y+E  K  +A
Sbjct: 614 ARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALA 673

Query: 99  DGSLIEKANAARTLVTSI 116
                 + +    LV  +
Sbjct: 674 SEDPEARRSVQAVLVHCL 691

Length = 1052

>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 30 DVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVY 89
          D + A D     ++  +D + L RL + +    +A++ YEF+ V  A  N    +L   Y
Sbjct: 29 DFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFY 88

Query: 90 LECIK 94
          L+ IK
Sbjct: 89 LDIIK 93

This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 180

>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed

 Score = 44.3 bits (106), Expect = 3e-06
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query: 29  ADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDV 88
            D + A D     ++  +D W L RLA+      +A++ Y+F+ V    +N    +L   
Sbjct: 657 NDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAF 716

Query: 89  YLECIK 94
           YL+ IK
Sbjct: 717 YLDIIK 722

Length = 912

>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 29  ADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDV 88
            D +   D     ++  +D WILSRL   V    +A++ Y+F+ V  A  N    +L + 
Sbjct: 667 DDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNW 726

Query: 89  YLECIKPVM 97
           YL+ IK  +
Sbjct: 727 YLDIIKDRL 735

Length = 933

>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 42  KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP 95
           K    D WILSRL   V   N+A +KY F+ V  A  +  + EL + Y+  I+ 
Sbjct: 692 KFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRD 745

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
COG0060	933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	99.88
COG0525	877	ValS Valyl-tRNA synthetase [Translation, ribosomal	99.86
cd07961	183	Anticodon_Ia_Ile_ABEc Anticodon-binding domain of	99.8
cd07960	180	Anticodon_Ia_Ile_BEm Anticodon-binding domain of b	99.76
KOG0433|consensus	937		99.74
PLN02381	1066	valyl-tRNA synthetase	99.73
PLN02843	974	isoleucyl-tRNA synthetase	99.71
KOG0432|consensus	995		99.69
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	99.67
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	99.67
PF08264	153	Anticodon_1: Anticodon-binding domain of tRNA; Int	99.67
PLN02943	958	aminoacyl-tRNA ligase	99.65
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	99.65
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	99.64
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	99.62
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	99.6
PLN02882	1159	aminoacyl-tRNA ligase	99.6
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	99.56
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	99.56
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	99.46
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	99.43
cd07375	117	Anticodon_Ia_like Anticodon-binding domain of clas	99.15
cd07962	135	Anticodon_Ia_Val Anticodon-binding domain of valyl	99.08
cd07959	117	Anticodon_Ia_Leu_AEc Anticodon-binding domain of a	99.07
KOG0434|consensus	1070		99.01
cd07957	129	Anticodon_Ia_Met Anticodon-binding domain of methi	98.98
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	98.87
PRK12268	556	methionyl-tRNA synthetase; Reviewed	98.73
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	98.72
cd07958	117	Anticodon_Ia_Leu_BEm Anticodon-binding domain of b	98.64
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	98.5
PLN02610	801	probable methionyl-tRNA synthetase	98.45
PLN02959	1084	aminoacyl-tRNA ligase	98.43
PRK12267	648	methionyl-tRNA synthetase; Reviewed	98.42
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	98.37
PRK11893	511	methionyl-tRNA synthetase; Reviewed	98.34
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	97.96
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	97.95
PLN02224	616	methionine-tRNA ligase	97.9
PLN02563	963	aminoacyl-tRNA ligase	97.55
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	97.1
PTZ00399	651	cysteinyl-tRNA-synthetase; Provisional	95.51
COG0143	558	MetG Methionyl-tRNA synthetase [Translation, ribos	94.79
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	94.22
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	90.44
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	86.51

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.8e-22  Score=172.25  Aligned_cols=102  Identities=25%  Similarity=0.328  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      ++||+++|.+.++  ++|+|+.+.++.+++..+|||||++++.++++++++|++|+|+++++.+.+|+.++||+|||+++
T Consensus       654 ~irNt~rF~l~nl--~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~  731 (933)
T COG0060         654 KIRNTYRFLLGNL--DDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDII  731 (933)
T ss_pred             HHHHHHHHHHHhc--cCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            4799999999984  46999887666678899999999999999999999999999999999999999999999999999


Q ss_pred             cccccC--CChHHHHHHHHHHHHHhc
Q psy961           94 KPVMAD--GSLIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~--~~~~~r~~a~~tL~~vl~  117 (118)
                      |+|+|+  +++++|++||+||++||+
T Consensus       732 kdr~y~~~~~s~~rraa~~~Ly~il~  757 (933)
T COG0060         732 KDRLYTEAADSPDRRAAQTTLYHILK  757 (933)
T ss_pred             HHHhhhcCCCCHHHHHHHHHHHHHHH
Confidence            999996  578999999999999985

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1e-21  Score=166.41  Aligned_cols=109  Identities=30%  Similarity=0.433  Sum_probs=92.3

Q ss_pred             ccccccchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhH
Q psy961            4 DRVSAPYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWL   82 (118)
Q Consensus         4 ~~~~~~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~   82 (118)
                      .|+++.+.... +||+.+|.+++..+..+.+...    ...+++||||+++|++++++++++|++|+|..|+++||+|+|
T Consensus       567 ~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~----~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W  642 (877)
T COG0525         567 KRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDL----LALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIW  642 (877)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcccccCcccccc----cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhH
Confidence            46666666665 6999999999875544333221    233689999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHhhcccccCCChHHHHHHHHHHHHHhc
Q psy961           83 YELCDVYLECIKPVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        83 ~~ls~~Yle~~K~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      ++|||||||++|.++|++ ..++++++.||++||+
T Consensus       643 ~~fcD~YlEl~K~~l~~~-~~~~~~a~~tL~~vl~  676 (877)
T COG0525         643 NDFCDWYLELAKPRLYGG-EEEKRAARATLYYVLD  676 (877)
T ss_pred             HHHHHHHHHHhhhhhcCc-HHHHHHHHHHHHHHHH
Confidence            999999999999999988 6678899999999985

>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases

Probab=99.80  E-value=6.3e-19  Score=126.24  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=87.4

Q ss_pred             ccccccch-hhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q psy961            4 DRVSAPYT-HLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLW   81 (118)
Q Consensus         4 ~~~~~~~~-~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~   81 (118)
                      ++|.++.+ .+. +||+.+|.+......+++|+....+...++.+|+||++++++++++++++|++|+|+.|++.++.|+
T Consensus         4 ~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f~   83 (183)
T cd07961           4 KGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFI   83 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34556666 444 7999999975222224655432222334688999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHhhcccccCCC-hHHHHHHHHHHHHHhc
Q psy961           82 LYELCDVYLECIKPVMADGS-LIEKANAARTLVTSIV  117 (118)
Q Consensus        82 ~~~ls~~Yle~~K~~ly~~~-~~~r~~a~~tL~~vl~  117 (118)
                      + .+++||+|++|+++|+++ +..+++++.++.++++
T Consensus        84 ~-~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~  119 (183)
T cd07961          84 D-ELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLL  119 (183)
T ss_pred             H-HhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHH
Confidence            7 467999999999999753 4456788999988774

This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.

>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases

Probab=99.76  E-value=9.8e-18  Score=119.78  Aligned_cols=101  Identities=23%  Similarity=0.305  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhc
Q psy961           15 RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK   94 (118)
Q Consensus        15 ~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K   94 (118)
                      +||+++|.+....  +++|.........++..|+||+++++++++++.++|++|+|+.|++.+++|+++++|++|++.+|
T Consensus        16 l~N~~rf~~~~~~--~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~Yi~~~k   93 (180)
T cd07960          16 IRNTFRFLLGNLN--DFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIK   93 (180)
T ss_pred             HHHHHHHHHHccc--CCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7999999876543  36554321112346789999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC--ChHHHHHHHHHHHHHhc
Q psy961           95 PVMADG--SLIEKANAARTLVTSIV  117 (118)
Q Consensus        95 ~~ly~~--~~~~r~~a~~tL~~vl~  117 (118)
                      ++++++  +++.+++++.+++.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~l~  118 (180)
T cd07960          94 DRLYCDAKDSLERRSAQTVLYHILD  118 (180)
T ss_pred             cceecCCCCCHHHHHHHHHHHHHHH
Confidence            999964  34556778889988874

This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.

>KOG0433|consensus

Probab=99.74  E-value=1e-17  Score=139.42  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=95.2

Q ss_pred             cchhhHHHHH-HHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhH
Q psy961            9 PYTHLTRWYG-HVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCD   87 (118)
Q Consensus         9 ~~~~l~~wn~-~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~   87 (118)
                      +.+.+..|.. ++|++.+.+  +|++....++...+..+|+++|+.|..++++++++|++|+|+++++.+..|+.+++|+
T Consensus       665 v~e~l~K~R~T~RfllGnl~--d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa  742 (937)
T KOG0433|consen  665 VDEKLIKFRNTFRFLLGNLQ--DFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSA  742 (937)
T ss_pred             HHHHHHHHHhHHHHHhhccc--ccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhH
Confidence            3455555544 478888876  4888877788888999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCC--ChHHHHHHHHHHHHHhc
Q psy961           88 VYLECIKPVMADG--SLIEKANAARTLVTSIV  117 (118)
Q Consensus        88 ~Yle~~K~~ly~~--~~~~r~~a~~tL~~vl~  117 (118)
                      +|++++||||||+  ++..|+++|+||++++.
T Consensus       743 ~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~  774 (937)
T KOG0433|consen  743 FYFDIVKDRLYCDKVGSESRRSAQTTLHHLLH  774 (937)
T ss_pred             HHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHH
Confidence            9999999999986  78999999999999874

>PLN02381 valyl-tRNA synthetase

Probab=99.73  E-value=2.6e-17  Score=143.62  Aligned_cols=111  Identities=29%  Similarity=0.459  Sum_probs=88.2

Q ss_pred             cccccchhh-HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHH
Q psy961            5 RVSAPYTHL-TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLY   83 (118)
Q Consensus         5 ~~~~~~~~l-~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~   83 (118)
                      |+.+....+ ++||+..|.+.+.. ++|+|+.. ++...++++|+||+++|++++++++++|++|+|++|++.+++|+|+
T Consensus       735 ~v~~~r~f~nKlwNa~rf~~~~~~-~~~~~~~~-~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~  812 (1066)
T PLN02381        735 RVVGYRQWCNKLWNAVRFAMSKLG-DDYTPPAT-LSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQY  812 (1066)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc-cccCcccc-cCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344333333 37999999887653 24655421 1223467899999999999999999999999999999999999999


Q ss_pred             hhhHHHHHhhcccccCCC---hHHHHHHHHHHHHHhc
Q psy961           84 ELCDVYLECIKPVMADGS---LIEKANAARTLVTSIV  117 (118)
Q Consensus        84 ~ls~~Yle~~K~~ly~~~---~~~r~~a~~tL~~vl~  117 (118)
                      +||+||||.+|+++++.+   +.+|++|+.||+++++
T Consensus       813 dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~  849 (1066)
T PLN02381        813 QFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLD  849 (1066)
T ss_pred             HhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHH
Confidence            999999999999999753   3567889999999875

>PLN02843 isoleucyl-tRNA synthetase

Probab=99.71  E-value=1e-16  Score=138.96  Aligned_cols=101  Identities=15%  Similarity=0.246  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      ++||+++|.+.++.  +|+|. ..++...++.+|+||+++++++++++.++|++|+|++|++.|++|++.++|++||+.+
T Consensus       672 kl~n~~rf~lgnl~--~~~~~-~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~  748 (974)
T PLN02843        672 KLRGTLRYLLGNLH--DWKPD-NAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVA  748 (974)
T ss_pred             HHHHHHHHHHhCcc--CCCcc-cccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence            37999999987765  46652 2233345678899999999999999999999999999999999999999999999999


Q ss_pred             cccccCC--ChHHHHHHHHHHHHHhc
Q psy961           94 KPVMADG--SLIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~~--~~~~r~~a~~tL~~vl~  117 (118)
                      |+++|++  ++..|+++|+||+.+++
T Consensus       749 Kprly~~~~~~~~r~~~qtvL~~iLe  774 (974)
T PLN02843        749 KDRLYVGGTTSFTRRSCQTVLAAHLL  774 (974)
T ss_pred             chhhhccCCCHHHHHHHHHHHHHHHH
Confidence            9999975  56778899999999875

>KOG0432|consensus

Probab=99.69  E-value=1.8e-16  Score=133.80  Aligned_cols=103  Identities=34%  Similarity=0.555  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      ++||+++|.+.... .+|.|+....+......+|+||+|+|+..++++.+.|+.|+|..|++++++|+..+|||.|+|.+
T Consensus       683 KlWNa~rF~l~~lg-~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~  761 (995)
T KOG0432|consen  683 KLWNATRFALQRLG-ENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEAT  761 (995)
T ss_pred             HHHHHHHHHHHhcc-cCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            37999999998743 35777653322222223999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCChHHHHHHHHHHHHHhc
Q psy961           94 KPVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      |+.+++++...+.+|+.||+.||+
T Consensus       762 Kp~l~~~~~~~~~~a~~vL~~~ld  785 (995)
T KOG0432|consen  762 KPLLWGDSEALAYEARRVLYRCLD  785 (995)
T ss_pred             hHHhcCCcHHHHHHHHHHHHHHHH
Confidence            999998887889999999999986

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=99.67  E-value=4e-16  Score=135.18  Aligned_cols=102  Identities=16%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      ++||.++|.+.+..  +|+|..+.++...+..+|+||++++++++++++++|++|+|++|++.+++|+|+++|++||+++
T Consensus       682 kL~N~~rf~l~nl~--~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~  759 (961)
T PRK13804        682 KLRNTLRWLLGNLA--HFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIR  759 (961)
T ss_pred             HHHHHHHHHHhccc--cCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47999988877654  4666543333345678899999999999999999999999999999999999999999999999


Q ss_pred             cccccCC--ChHHHHHHHHHHHHHhc
Q psy961           94 KPVMADG--SLIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~~--~~~~r~~a~~tL~~vl~  117 (118)
                      |+++|+.  ++..|+++++||+.+++
T Consensus       760 K~rl~~~~~~~~~r~~~~~vL~~il~  785 (961)
T PRK13804        760 KDALYCDAPSSLRRRAAQTVFYEIFV  785 (961)
T ss_pred             hHhhhcCCCCcHHHHHHHHHHHHHHH
Confidence            9999974  56678899999999875

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=99.67  E-value=2.6e-16  Score=135.81  Aligned_cols=102  Identities=22%  Similarity=0.296  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      ++||..+|.+.+..  +|+|..+.++...+..+|+||++++++++++++++|++|+|++|++.|++|+|+++|++|||++
T Consensus       644 kl~N~~rf~~~nl~--~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~  721 (912)
T PRK05743        644 RIRNTLRFLLGNLN--DFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDII  721 (912)
T ss_pred             HHHHHHHHHHhCcc--CCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheec
Confidence            47999999887654  3666433333345678999999999999999999999999999999999999999999999999


Q ss_pred             cccccCC--ChHHHHHHHHHHHHHhc
Q psy961           94 KPVMADG--SLIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~~--~~~~r~~a~~tL~~vl~  117 (118)
                      |+|||+.  ++..|+++++||+.+++
T Consensus       722 K~rly~~~~~~~~r~~~~~vL~~~l~  747 (912)
T PRK05743        722 KDRLYTDAADSLARRSAQTALYHILE  747 (912)
T ss_pred             cHhhhcCCCCcHHHHHHHHHHHHHHH
Confidence            9999974  45678899999999875

>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6

Probab=99.67  E-value=2.6e-16  Score=108.89  Aligned_cols=70  Identities=31%  Similarity=0.494  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCCCh-HHHHHHHHHHHHHhc
Q psy961           47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSL-IEKANAARTLVTSIV  117 (118)
Q Consensus        47 DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~~~-~~r~~a~~tL~~vl~  117 (118)
                      |+||++++++++++++++|++|+|+.|++.+++|+++++|++|++.+|++++++++ ..|+ ++.++..+++
T Consensus         1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~   71 (153)
T PF08264_consen    1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILK   71 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999997532 3356 9999998875

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....

>PLN02943 aminoacyl-tRNA ligase

Probab=99.65  E-value=1.1e-15  Score=132.49  Aligned_cols=107  Identities=16%  Similarity=0.306  Sum_probs=85.0

Q ss_pred             ccchhh-HHHHHHHHHHHhcCCC------------CCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHH
Q psy961            8 APYTHL-TRWYGHVTELKKKQDA------------DVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVT   74 (118)
Q Consensus         8 ~~~~~l-~~wn~~~f~l~~~~~~------------~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~   74 (118)
                      .....+ ++||+..|.+.+..+.            .|++..   +...++..|+||++++++++++++++|++|+|++|+
T Consensus       628 ~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~  704 (958)
T PLN02943        628 SNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEE---SLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVG  704 (958)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccccccccCCccc---cccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence            334444 4799999988765321            133221   112457899999999999999999999999999999


Q ss_pred             HHHHHHhHHhhhHHHHHhhcccccCCC-hHHHHHHHHHHHHHhc
Q psy961           75 SACYNLWLYELCDVYLECIKPVMADGS-LIEKANAARTLVTSIV  117 (118)
Q Consensus        75 ~~i~~F~~~~ls~~Yle~~K~~ly~~~-~~~r~~a~~tL~~vl~  117 (118)
                      +.+++|+|+++|+||||.+|+++|+.+ ...+++++.||+++++
T Consensus       705 ~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~  748 (958)
T PLN02943        705 REIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFE  748 (958)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999754 3457789999998875

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=99.65  E-value=1.2e-15  Score=134.31  Aligned_cols=102  Identities=11%  Similarity=0.099  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhcCC------CCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhH
Q psy961           14 TRWYGHVTELKKKQD------ADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCD   87 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~------~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~   87 (118)
                      ++||+..|.+.+..+      .+|++.+... ......+|+||++++++++++|+++|++|+|+.|++.|++|++ ++|+
T Consensus       775 klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~-~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsn  852 (1205)
T PTZ00427        775 PFYHSFRFFSQEVTRYECLNKKQFLFNTDYI-YKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTN  852 (1205)
T ss_pred             HHHHHHHHHHhccccccccccccCCcCcccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-Hhcc
Confidence            579999998875431      1343322111 1235678999999999999999999999999999999999996 5999


Q ss_pred             HHHHhhcccccCC-ChHHHHHHHHHHHHHhc
Q psy961           88 VYLECIKPVMADG-SLIEKANAARTLVTSIV  117 (118)
Q Consensus        88 ~Yle~~K~~ly~~-~~~~r~~a~~tL~~vl~  117 (118)
                      |||+++|+|||++ +.+++.+|++||+++|+
T Consensus       853 wYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~  883 (1205)
T PTZ00427        853 WYIRLNRDRMRGSLGEENCLQSLCTTYRTLH  883 (1205)
T ss_pred             HHHHHcchhhccCCCcHHHHHHHHHHHHHHH
Confidence            9999999999975 35567889999999985

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=99.64  E-value=1.8e-15  Score=131.55  Aligned_cols=113  Identities=33%  Similarity=0.474  Sum_probs=86.1

Q ss_pred             cccccchhh-HHHHHHHHHHHhcCCCCCCccccc---cCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q psy961            5 RVSAPYTHL-TRWYGHVTELKKKQDADVNAALDQ---ASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNL   80 (118)
Q Consensus         5 ~~~~~~~~l-~~wn~~~f~l~~~~~~~f~~~~~~---~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F   80 (118)
                      ++......+ ++||+..|.+.+..+....+....   .+...++.+|+||++++++++++++++|++|+|+.|++.+++|
T Consensus       665 ~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F  744 (995)
T PTZ00419        665 RVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNF  744 (995)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            344333333 479999999876543211111100   1123456789999999999999999999999999999999999


Q ss_pred             hHHhhhHHHHHhhcccccC-CChHHHHHHHHHHHHHhc
Q psy961           81 WLYELCDVYLECIKPVMAD-GSLIEKANAARTLVTSIV  117 (118)
Q Consensus        81 ~~~~ls~~Yle~~K~~ly~-~~~~~r~~a~~tL~~vl~  117 (118)
                      +|+++|+||||++|++++. .++.++++++.||+++++
T Consensus       745 ~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~  782 (995)
T PTZ00419        745 WLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLD  782 (995)
T ss_pred             HHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999953 355567889999999875

>TIGR00422 valS valyl-tRNA synthetase

Probab=99.62  E-value=4e-15  Score=127.72  Aligned_cols=99  Identities=29%  Similarity=0.482  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHhcCCC-CCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHh
Q psy961           14 TRWYGHVTELKKKQDA-DVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLEC   92 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~-~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~   92 (118)
                      ++||+.+|...+.... ++++.     .......|+||+++++.++++++++|++|+|++|++.+++|+|+++|+|||+.
T Consensus       578 kl~N~~rf~~~~~~~~~~~~~~-----~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~  652 (861)
T TIGR00422       578 KLWNASRFVLMNLSDDLELSGG-----EEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIEL  652 (861)
T ss_pred             HHHHHHHHHHhccccccccccc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799888887654321 12111     12356789999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCChHHHHHHHHHHHHHhc
Q psy961           93 IKPVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        93 ~K~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      +|+++++++..++++++.||+++++
T Consensus       653 ~k~~~~~~~~~~~~~~~~~l~~~l~  677 (861)
T TIGR00422       653 VKYRLYNGNEAEKKAARDTLYYVLD  677 (861)
T ss_pred             hHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            9999997666678899999999875

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=99.60  E-value=9.5e-15  Score=127.63  Aligned_cols=101  Identities=26%  Similarity=0.448  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhc
Q psy961           15 RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK   94 (118)
Q Consensus        15 ~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K   94 (118)
                      +||+.+|.+.+..  +|.++........++..|+||+++++.++++++++|++|+|+.|++.+++|+|+++|+|||+.+|
T Consensus       592 l~N~~R~~~~~~~--~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k  669 (1052)
T PRK14900        592 LWNASRFALMNLS--GYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAK  669 (1052)
T ss_pred             HHHHHHHHHHhhh--ccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence            6998788776543  35443221112235678999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCChHHHHHHHHHHHHHhc
Q psy961           95 PVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        95 ~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      ++|++.+...+++++.+|+.+|+
T Consensus       670 ~~l~~~~~~~~~~~~~~L~~~L~  692 (1052)
T PRK14900        670 EALASEDPEARRSVQAVLVHCLQ  692 (1052)
T ss_pred             HhhccCCHHHHHHHHHHHHHHHH
Confidence            99998766667788999988875

>PLN02882 aminoacyl-tRNA ligase

Probab=99.60  E-value=9.6e-15  Score=128.47  Aligned_cols=104  Identities=14%  Similarity=0.139  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHhcCC------CCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhh
Q psy961           13 LTRWYGHVTELKKKQD------ADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELC   86 (118)
Q Consensus        13 l~~wn~~~f~l~~~~~------~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls   86 (118)
                      .++||+..|.+.+...      ++|.|............+|+||+++++++++++.++|++|+|++|++.|++|++ ++|
T Consensus       668 ~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~-~ls  746 (1159)
T PLN02882        668 LPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFID-NLT  746 (1159)
T ss_pred             HHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHh
Confidence            4589999888876432      346654210000124678999999999999999999999999999999999995 699


Q ss_pred             HHHHHhhcccccCC-ChHHHHHHHHHHHHHhc
Q psy961           87 DVYLECIKPVMADG-SLIEKANAARTLVTSIV  117 (118)
Q Consensus        87 ~~Yle~~K~~ly~~-~~~~r~~a~~tL~~vl~  117 (118)
                      +|||+.+|+|+|++ ++++++++++||+++|+
T Consensus       747 N~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~  778 (1159)
T PLN02882        747 NIYVRFNRKRLKGRTGEEDCRTALSTLYNVLL  778 (1159)
T ss_pred             HHHHHhCCHhhhCCCChHHHHHHHHHHHHHHH
Confidence            99999999999964 45678899999999885

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=99.56  E-value=3.1e-14  Score=123.73  Aligned_cols=104  Identities=20%  Similarity=0.235  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHh
Q psy961           13 LTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLEC   92 (118)
Q Consensus        13 l~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~   92 (118)
                      .++||.+.|.+.....++|++.....+...+.+.|+||++++++++++++++|++|+|+.|++.|++|+ +++|+||+++
T Consensus       645 ~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~  723 (975)
T PRK06039        645 LTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRR  723 (975)
T ss_pred             HHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHH
Confidence            457999988764322234544321112234578999999999999999999999999999999999999 8999999999


Q ss_pred             hcccccCC-ChHHHHHHHHHHHHHhc
Q psy961           93 IKPVMADG-SLIEKANAARTLVTSIV  117 (118)
Q Consensus        93 ~K~~ly~~-~~~~r~~a~~tL~~vl~  117 (118)
                      +|+|+|+. ++.+++++++||+++|+
T Consensus       724 ~k~r~w~~~~~~~~~~a~~~L~~~L~  749 (975)
T PRK06039        724 SRRRFWKEEDDPDKLAAYATLYTVLE  749 (975)
T ss_pred             hhhhhccCCCcHHHHHHHHHHHHHHH
Confidence            99999964 34567889999999875

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=99.56  E-value=3.4e-14  Score=122.27  Aligned_cols=97  Identities=31%  Similarity=0.479  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhc
Q psy961           15 RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK   94 (118)
Q Consensus        15 ~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K   94 (118)
                      +||+.+|.+.+..+  +.+.. ..+...+...|+||+++++++++++.++|++|+|+.|++.|++|+|+++|+||||++|
T Consensus       574 l~N~~Rf~~~~~~~--~~~~~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k  650 (874)
T PRK05729        574 LWNASRFVLMNLEG--ADVGE-LPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAK  650 (874)
T ss_pred             HHHHHHHHHHhccc--CCccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69988888766432  22211 1112245788999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCChHHHHHHHHHHHHHhc
Q psy961           95 PVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        95 ~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      +++| . . .+++++.||+++++
T Consensus       651 ~~l~-~-~-~~~~~~~~l~~~l~  670 (874)
T PRK05729        651 PVLQ-E-A-AKRATRATLAYVLE  670 (874)
T ss_pred             HHhh-h-h-HHHHHHHHHHHHHH
Confidence            9998 2 2 37789999999875

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=99.46  E-value=7.2e-13  Score=113.92  Aligned_cols=101  Identities=27%  Similarity=0.380  Sum_probs=80.0

Q ss_pred             HHHHHHHHH--HhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHh
Q psy961           15 RWYGHVTEL--KKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLEC   92 (118)
Q Consensus        15 ~wn~~~f~l--~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~   92 (118)
                      +||.+.|.+  .+.  .+|+|+...++...+...|+|++++++++++++.++|++|+|+.|++.+++|+++++|++|++.
T Consensus       665 l~N~~~~~~~~~~l--~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~  742 (861)
T TIGR00392       665 RWNTYRFLLTYANL--DKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRI  742 (861)
T ss_pred             HHHHHHHHHHHhcc--ccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588888876  433  3455542222223457789999999999999999999999999999999999988899999999


Q ss_pred             hcccccCC-ChHHHHHHHHHHHHHhc
Q psy961           93 IKPVMADG-SLIEKANAARTLVTSIV  117 (118)
Q Consensus        93 ~K~~ly~~-~~~~r~~a~~tL~~vl~  117 (118)
                      +|+++|+. .+..+++++++|+.+++
T Consensus       743 ~k~~lw~~~~~~~~~~~~~~l~~~l~  768 (861)
T TIGR00392       743 IRDRLYCEAKDNDKRAAQTTLYYALL  768 (861)
T ss_pred             hhHHhccCCCCHHHHHHHHHHHHHHH
Confidence            99999964 22333489999988875

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=99.43  E-value=1.3e-12  Score=111.61  Aligned_cols=103  Identities=26%  Similarity=0.400  Sum_probs=78.6

Q ss_pred             cchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhH
Q psy961            9 PYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCD   87 (118)
Q Consensus         9 ~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~   87 (118)
                      ..+.+. +||...+..........  .    ....+...|+|++++++.+++++.++|++|+|+.|++.|++|+++++|+
T Consensus       579 ~~~~l~kl~N~~r~~~~~~~~~~~--~----~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n  652 (800)
T PRK13208        579 GRRLLTKLWNASRFVLHFSADPEP--D----KAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCD  652 (800)
T ss_pred             HHHHHHHHHHHHHHHHhccccccc--C----ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH
Confidence            333443 68887776532111111  0    1123567899999999999999999999999999999999999989999


Q ss_pred             HHHHhhcccccCCCh-HHHHHHHHHHHHHhc
Q psy961           88 VYLECIKPVMADGSL-IEKANAARTLVTSIV  117 (118)
Q Consensus        88 ~Yle~~K~~ly~~~~-~~r~~a~~tL~~vl~  117 (118)
                      +||+.+|+++++++. ..+++++.+++++++
T Consensus       653 ~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~  683 (800)
T PRK13208        653 DYLELVKSRAYGEDEEEEQKSARYTLYTVLD  683 (800)
T ss_pred             HHHHHhhHHhcCCCCcHHHHHHHHHHHHHHH
Confidence            999999999996543 236788899988875

>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains

Probab=99.15  E-value=6.9e-10  Score=72.41  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=71.5

Q ss_pred             cccccchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHH
Q psy961            5 RVSAPYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLY   83 (118)
Q Consensus         5 ~~~~~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~   83 (118)
                      .|.++.+.+. .|+...+.......  ..|...   .......|+|+++++++++++++++|++|+|+.|++.+++|++ 
T Consensus         3 ~v~~~~~~~n~~~r~~~~~~~~~~~--~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~-   76 (117)
T cd07375           3 RLKQARAFLNRLYRLLSFFRKALGG--TQPKWD---NELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTN-   76 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcC---hhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence            3455555555 47777665443221  222211   0123567999999999999999999999999999999999984 


Q ss_pred             hhhHHHHHhhcccccCCChHHHHHHHHHHHHHh
Q psy961           84 ELCDVYLECIKPVMADGSLIEKANAARTLVTSI  116 (118)
Q Consensus        84 ~ls~~Yle~~K~~ly~~~~~~r~~a~~tL~~vl  116 (118)
                      .+ ++|++..|++.++++  .+.++..++..++
T Consensus        77 ~~-n~y~~~~~pw~~~~~--~~~~~~~~~~~~l  106 (117)
T cd07375          77 EL-NWYLDELKPALQTEE--LREAVLAVLRAAL  106 (117)
T ss_pred             hc-cHHHHHhhHHHcCch--hHHHHHHHHHHHH
Confidence            43 999999999988653  2334555665554

This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.

>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases

Probab=99.08  E-value=2.8e-09  Score=72.73  Aligned_cols=108  Identities=29%  Similarity=0.474  Sum_probs=75.1

Q ss_pred             cccccchhhHH-HHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHH
Q psy961            5 RVSAPYTHLTR-WYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLY   83 (118)
Q Consensus         5 ~~~~~~~~l~~-wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~   83 (118)
                      .|+++.+.|.. ||...|.......  +++.++  +.......|+|++++++++++++.++|++|+|++|++.++.++.+
T Consensus         5 ~~~~~~~~l~k~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~   80 (135)
T cd07962           5 RVEGGRNFCNKLWNAARFVLMNLED--DDEPEE--DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN   80 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccc--cCcccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            35566677764 6666665342121  122111  112345689999999999999999999999999999999999865


Q ss_pred             hhhHHHHHhhcccccCCChHHHHHHHHHHHHHh
Q psy961           84 ELCDVYLECIKPVMADGSLIEKANAARTLVTSI  116 (118)
Q Consensus        84 ~ls~~Yle~~K~~ly~~~~~~r~~a~~tL~~vl  116 (118)
                      +++++|++..++.....++.+..+...++..++
T Consensus        81 ~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l  113 (135)
T cd07962          81 DFCDWYLELVKPRLYGEDEEEKKAARATLYYVL  113 (135)
T ss_pred             HHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHH
Confidence            699999999999755444333444555555544

This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.

>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases

Probab=99.07  E-value=9.2e-10  Score=72.68  Aligned_cols=52  Identities=27%  Similarity=0.393  Sum_probs=46.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH-HHHhHHhhhHHHHHhhccc
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSAC-YNLWLYELCDVYLECIKPV   96 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i-~~F~~~~ls~~Yle~~K~~   96 (118)
                      ++..|+|+++++++++++++++|++|+|++|++.+ +.|. + .+++|++.+|++
T Consensus        33 ~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~-~-~~~~Y~~~~~~~   85 (117)
T cd07959          33 LTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQ-N-DLDWYRERGGAG   85 (117)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-H-HHHHHHHHhCcc
Confidence            46789999999999999999999999999999998 6664 4 699999999986

This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.

>KOG0434|consensus

Probab=99.01  E-value=1.9e-09  Score=90.51  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=82.2

Q ss_pred             hhHHHHHHHHHHHhcC------CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhh
Q psy961           12 HLTRWYGHVTELKKKQ------DADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYEL   85 (118)
Q Consensus        12 ~l~~wn~~~f~l~~~~------~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~l   85 (118)
                      .|+.||++.|.+.+..      ..+|+++.. ++  ..+.+||||++..+.++..+++.|+.|++..++..+..|+ +++
T Consensus       654 ~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~-~~--S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfi-D~L  729 (1070)
T KOG0434|consen  654 LLPWYNSYRFLVQNAALLKKETGKDFVFDDS-VT--SSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DEL  729 (1070)
T ss_pred             hhhhhHHHHHHHHHHHHhccccCCccccccc-cc--cchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHH-HHh
Confidence            4567999999987632      224555432 21  3467999999999999999999999999999999999998 899


Q ss_pred             hHHHHHhhcccccCCC-hHHHHHHHHHHHHHh
Q psy961           86 CDVYLECIKPVMADGS-LIEKANAARTLVTSI  116 (118)
Q Consensus        86 s~~Yle~~K~~ly~~~-~~~r~~a~~tL~~vl  116 (118)
                      .+||+.+-+.||.+.+ ..+.-.|.++|..+|
T Consensus       730 TNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL  761 (1070)
T KOG0434|consen  730 TNWYIRFNRRRLKGENGEHDCHNALNVLFEVL  761 (1070)
T ss_pred             hhhheehhhhhhcCCCchHHHHHHHHHHHHHH
Confidence            9999999999999643 345678899998876

>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases

Probab=98.98  E-value=2.9e-09  Score=71.12  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=50.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccC
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD   99 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~   99 (118)
                      .+..|+|+++++++++++++++|++|+|++|++.+++|+  ++|++|++..|+-..+
T Consensus        34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~   88 (129)
T cd07957          34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLA   88 (129)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHH
Confidence            466899999999999999999999999999999999998  6899999999986554

This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.

>TIGR00398 metG methionyl-tRNA synthetase

Probab=98.87  E-value=2.7e-08  Score=81.62  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCCChHHHHHHHHHHHHHhc
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      ....|+|++++++++.+.+.++|++|+|+.|++.+++|+  ++|++|++.+|+..+.+++++++++++++.++++
T Consensus       408 ~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~~l~  480 (530)
T TIGR00398       408 TDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWELFKQSPRLKELLAVCSMLIR  480 (530)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhhcCChHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999998  6899999999998776655577889999988875

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=98.73  E-value=5.3e-08  Score=80.32  Aligned_cols=55  Identities=13%  Similarity=0.141  Sum_probs=50.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccC
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD   99 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~   99 (118)
                      ++..|+|++++++++++.+.++|++|+|+.|++.+++|+  ++|++|++..|+....
T Consensus       414 ~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw~~~  468 (556)
T PRK12268        414 LGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPWKLA  468 (556)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCChhhh
Confidence            467899999999999999999999999999999999998  5999999999996543

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=98.72  E-value=7.8e-08  Score=83.57  Aligned_cols=62  Identities=19%  Similarity=0.380  Sum_probs=53.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCCChHHHHHHHHHHHHHh
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVTSI  116 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~~~~~r~~a~~tL~~vl  116 (118)
                      +...|+|+++++++++++++++|++|+|+.|++.++.|++++ ++||++.+|+           +++.+|++++
T Consensus       647 ~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~-~n~Yi~~~k~-----------~~~~~l~~~l  708 (897)
T PRK12300        647 LRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLND-LRWYLRRVGE-----------ANNKVLREVL  708 (897)
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHhcch-----------HHHHHHHHHH
Confidence            467899999999999999999999999999999998888776 6899999886           3555666554

>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases

Probab=98.64  E-value=4.1e-07  Score=59.59  Aligned_cols=80  Identities=19%  Similarity=0.217  Sum_probs=56.5

Q ss_pred             ccccccchhhHH-HHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhH
Q psy961            4 DRVSAPYTHLTR-WYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWL   82 (118)
Q Consensus         4 ~~~~~~~~~l~~-wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~   82 (118)
                      +++.++...+.+ |+.........     .|..   +....+..|+|++++++++++++.++|++|+|++|++.+++|+ 
T Consensus         4 ~~~~~~~n~l~R~~~~~~~~~~~~-----~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~-   74 (117)
T cd07958           4 SGVEGAYRFLNRVWRLVTELAEAL-----AAPA---AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV-   74 (117)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhc-----cccc---cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH-
Confidence            466777777776 55444322211     1110   0123456899999999999999999999999999999999998 


Q ss_pred             HhhhHHHHHhh
Q psy961           83 YELCDVYLECI   93 (118)
Q Consensus        83 ~~ls~~Yle~~   93 (118)
                      + .++.|++..
T Consensus        75 ~-~~n~~~~~~   84 (117)
T cd07958          75 N-ALYKYKKKD   84 (117)
T ss_pred             H-HHHHhhccc
Confidence            3 367776543

This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=98.50  E-value=1e-06  Score=75.89  Aligned_cols=72  Identities=17%  Similarity=0.242  Sum_probs=54.0

Q ss_pred             cccchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhh
Q psy961            7 SAPYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYEL   85 (118)
Q Consensus         7 ~~~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~l   85 (118)
                      ..+.+.+. +||...+.+.+.  ..+++        ....+|+|+++++++++++++++|++|+|+.|++.+++|+ +++
T Consensus       615 ~~~~~~l~kl~~~~~~~~~~~--~~~~~--------~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-n~l  683 (805)
T PRK00390        615 EGAYRFLQRVWRLVVDAKGEA--GALDV--------AALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV-NAL  683 (805)
T ss_pred             HHHHHHHHHHHHHHHHhhhcc--cccCc--------ccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHH
Confidence            34445555 477777743332  12221        2346899999999999999999999999999999999998 577


Q ss_pred             hHHH
Q psy961           86 CDVY   89 (118)
Q Consensus        86 s~~Y   89 (118)
                      +.+|
T Consensus       684 sk~~  687 (805)
T PRK00390        684 YKAE  687 (805)
T ss_pred             HHHH
Confidence            7776

>PLN02610 probable methionyl-tRNA synthetase

Probab=98.45  E-value=1.1e-06  Score=75.66  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=57.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc-cccCCChHHHHHHHHHHHHHh
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP-VMADGSLIEKANAARTLVTSI  116 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~-~ly~~~~~~r~~a~~tL~~vl  116 (118)
                      ...+|+|++++++++++++.++|++|+|++|++.|++|.  ++|++||+..|+ .|..++..+...+..++.+++
T Consensus       436 ~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~--~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~l  508 (801)
T PLN02610        436 SHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLV  508 (801)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHH
Confidence            356799999999999999999999999999999999986  789999999988 665544433344444444444

>PLN02959 aminoacyl-tRNA ligase

Probab=98.43  E-value=1.3e-06  Score=77.36  Aligned_cols=62  Identities=15%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHH-HHhhcc--cccCCChHHHHHHHHHHHHHhc
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVY-LECIKP--VMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Y-le~~K~--~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      ++.+|+||++++++++++++++|++|+|++|++.          .|| |+.+|+  |+|++++   ..++.+|+++|+
T Consensus       792 ~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~----------~~Yel~~~k~~yr~~~~~~---~~~~~~L~~vl~  856 (1084)
T PLN02959        792 STYADRVFENEINIAIAETEKNYEAMMFREALKS----------GFYDLQAARDEYRLSCGSG---GMNRDLVWRFMD  856 (1084)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHhHHHHhhccccc---hHHHHHHHHHHH
Confidence            4679999999999999999999999999999884          356 777888  8887532   145777777764

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=98.42  E-value=9.2e-07  Score=74.42  Aligned_cols=73  Identities=12%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCCC---hHHHHHHHHHHHHHh
Q psy961           42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGS---LIEKANAARTLVTSI  116 (118)
Q Consensus        42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~~---~~~r~~a~~tL~~vl  116 (118)
                      ..+..|+|++++++++++++.++|++|+|++|++.+++|+  ..|++|++..|+--...+   ..+.+++.+++.+++
T Consensus       379 ~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l  454 (648)
T PRK12267        379 NVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKDEGKKERLATVMYHLAESL  454 (648)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999998  479999999998322222   223344555555544

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=98.37  E-value=2e-06  Score=72.81  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=56.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhccc-ccCCChHHHHHHHHHHHHHh
Q psy961           44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPV-MADGSLIEKANAARTLVTSI  116 (118)
Q Consensus        44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~-ly~~~~~~r~~a~~tL~~vl  116 (118)
                      ...|+|++++++++++++.++|++|+|+.|++.+++|+  ++|++|++..|+. +..++..+.+.+..++.+++
T Consensus       408 ~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l  479 (673)
T PRK00133        408 ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLF  479 (673)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999999999997  6899999999994 33334333444555554443

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=98.34  E-value=2.8e-06  Score=69.23  Aligned_cols=73  Identities=16%  Similarity=0.177  Sum_probs=60.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccC-CChHHHHHHHHHHHHHhc
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD-GSLIEKANAARTLVTSIV  117 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~-~~~~~r~~a~~tL~~vl~  117 (118)
                      +...|+|++++++++.+.+.++|++|+|+.|++.+++|+  ..+++|++..|+.... ++...++++..+++++++
T Consensus       380 ~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~  453 (511)
T PRK11893        380 LTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLR  453 (511)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998  4689999999985432 344455667777776653

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=97.96  E-value=3e-05  Score=68.02  Aligned_cols=51  Identities=24%  Similarity=0.309  Sum_probs=44.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhcCcHHHHH-HHHHHHhHHhhhHHHHHhhcc
Q psy961           43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVT-SACYNLWLYELCDVYLECIKP   95 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~-~~i~~F~~~~ls~~Yle~~K~   95 (118)
                      .+..|+|+++++++++++++++|++|+|++|+ ..+++|++  .|+||++..|+
T Consensus       693 ~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~--~~n~Yl~~~~~  744 (938)
T TIGR00395       693 TSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQA--DVDWYRRRGGV  744 (938)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHHHHHHhCcc
Confidence            46789999999999999999999999999999 66899984  38999987544

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=97.95  E-value=3.9e-05  Score=66.62  Aligned_cols=75  Identities=16%  Similarity=0.157  Sum_probs=54.5

Q ss_pred             ccccchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCc-HHHHHHHHHHHhHH
Q psy961            6 VSAPYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYE-FNTVTSACYNLWLY   83 (118)
Q Consensus         6 ~~~~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~-f~~a~~~i~~F~~~   83 (118)
                      +..+.+.+. +||...+.+.+...  +.    ..+...++..|+||++++++++++|+++|++|+ |+.|++.+++|+ |
T Consensus       648 l~~~~~~l~kl~~~~~~~~~~~~~--~~----~~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~-n  720 (842)
T TIGR00396       648 LEGARRFLDRVWNLFYNILGELDG--KT----YLTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILL-N  720 (842)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc--cc----cCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-H
Confidence            344455555 57777776554321  21    011123567899999999999999999999999 999999999998 5


Q ss_pred             hhhH
Q psy961           84 ELCD   87 (118)
Q Consensus        84 ~ls~   87 (118)
                      ++++
T Consensus       721 ~L~~  724 (842)
T TIGR00396       721 ALYK  724 (842)
T ss_pred             HHHh
Confidence            6665

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>PLN02224 methionine-tRNA ligase

Probab=97.90  E-value=6.9e-05  Score=63.15  Aligned_cols=71  Identities=10%  Similarity=0.194  Sum_probs=55.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccc--cCCC-hHH-HHHHHHHHHHHh
Q psy961           44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM--ADGS-LIE-KANAARTLVTSI  116 (118)
Q Consensus        44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~l--y~~~-~~~-r~~a~~tL~~vl  116 (118)
                      ...|+|++++++++++++.++|++|+|++|++.+++|+  ..+++|++..++.-  ..++ +.+ ..++..++.+++
T Consensus       448 ~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~l  522 (616)
T PLN02224        448 AAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVM  522 (616)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHH
Confidence            44589999999999999999999999999999999997  67999999988873  2221 222 344555565554

>PLN02563 aminoacyl-tRNA ligase

Probab=97.55  E-value=0.00021  Score=62.91  Aligned_cols=77  Identities=18%  Similarity=0.113  Sum_probs=52.8

Q ss_pred             cccccchhhHH-HHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHH
Q psy961            5 RVSAPYTHLTR-WYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLY   83 (118)
Q Consensus         5 ~~~~~~~~l~~-wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~   83 (118)
                      .+.++++.|.. ||.......  .+..|.+..  .+  .....|+|+++++++++++|+++|++|+|+.|++.+++|+ +
T Consensus       766 ~V~g~~rfL~rlwn~~~~~~~--~~~~~~~~~--~~--~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~-n  838 (963)
T PLN02563        766 GVEGVHRFLGRTWRLVVGAPL--PDGSFRDGT--VV--TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFT-N  838 (963)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh--cccccCccc--cc--cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H
Confidence            45667777764 666543211  122232211  11  1134699999999999999999999999999999999998 4


Q ss_pred             hhhHH
Q psy961           84 ELCDV   88 (118)
Q Consensus        84 ~ls~~   88 (118)
                      .+++|
T Consensus       839 ~l~~~  843 (963)
T PLN02563        839 AAYKW  843 (963)
T ss_pred             HHhCc
Confidence            56553

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=97.10  E-value=0.004  Score=51.28  Aligned_cols=45  Identities=16%  Similarity=0.215  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHH
Q psy961           44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVY   89 (118)
Q Consensus        44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Y   89 (118)
                      ++.|+|+++++.++.+.+.+++++|+.+.+++.+++|. +.|++||
T Consensus       421 ~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la-~~f~~fY  465 (507)
T PRK01611        421 EEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFY  465 (507)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHH
Confidence            57899999999999999999999999999999999997 8999999

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional

Probab=95.51  E-value=0.048  Score=46.54  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHh-hcCcHHHHHHHHHHHhHHhhhHHHHH
Q psy961           43 VSPIDSWILSRLADAVATCNKAF-QKYEFNTVTSACYNLWLYELCDVYLE   91 (118)
Q Consensus        43 l~~~DrWils~l~~~~~~v~~~~-e~~~f~~a~~~i~~F~~~~ls~~Yle   91 (118)
                      +...|+|++..+..+.+.+.++| ++|+++.|+..|++|+  ..++.|++
T Consensus       390 ~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv--~~~N~yi~  437 (651)
T PTZ00399        390 WTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLI--SATNTYLN  437 (651)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHHHHHHh
Confidence            35689999999999999999999 7899999999999998  45899996

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=94.79  E-value=0.15  Score=42.82  Aligned_cols=49  Identities=22%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc
Q psy961           45 PIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP   95 (118)
Q Consensus        45 ~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~   95 (118)
                      ..|+-++.+...+.+.+.++|++++|++|+..+..+.  ..++.||.-.+|
T Consensus       417 ~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~~~P  465 (558)
T COG0143         417 EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDEQAP  465 (558)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhcCCC
Confidence            6899999999999999999999999999999999998  669999998766

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=94.22  E-value=0.31  Score=39.87  Aligned_cols=45  Identities=18%  Similarity=0.186  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHhHHhhhHHHHH
Q psy961           45 PIDSWILSRLADAVATCNKAFQ-KYEFNTVTSACYNLWLYELCDVYLE   91 (118)
Q Consensus        45 ~~DrWils~l~~~~~~v~~~~e-~~~f~~a~~~i~~F~~~~ls~~Yle   91 (118)
                      ..|+|++++++.+++.+.++|+ +|++..|+..|++|+ ++ .+.|++
T Consensus       330 ~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv-~~-~n~~~~  375 (463)
T PRK00260        330 EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELA-RE-INRALE  375 (463)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HH-HHHHhh
Confidence            3689999999999999999995 999999999999997 44 566664

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=90.44  E-value=3.3  Score=36.56  Aligned_cols=80  Identities=25%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             ccccccchhhHHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHH
Q psy961            4 DRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLY   83 (118)
Q Consensus         4 ~~~~~~~~~l~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~   83 (118)
                      +=|.++.++|.++..+.+........   ..    ..+. ...|+|.+|++.+.+++..+++  +.|+.+...+|.|+ |
T Consensus       621 ~gv~g~~rfL~r~~~l~~~~~~~~~~---~~----~~~~-~~~~~~~~h~~~~~v~~~~e~~--~~~nt~i~~~m~l~-N  689 (814)
T COG0495         621 SGVEGARRFLQRVWNLVKEHLEKLVE---EL----TKEQ-GKEDRWLLHRTIKKVTEDFEAR--QTFNTAIAALMELL-N  689 (814)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhcccc---cc----cchh-hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-H
Confidence            34677888888877776665432100   00    0111 1689999998887766666665  78888889999998 5


Q ss_pred             hhhHHHHHhhcc
Q psy961           84 ELCDVYLECIKP   95 (118)
Q Consensus        84 ~ls~~Yle~~K~   95 (118)
                      + .++|....+.
T Consensus       690 ~-l~~~~~~~~~  700 (814)
T COG0495         690 A-LRKYLRRTEG  700 (814)
T ss_pred             H-HHHHHhcccc
Confidence            5 5778765444

>TIGR00456 argS arginyl-tRNA synthetase

Probab=86.51  E-value=6.5  Score=33.02  Aligned_cols=54  Identities=19%  Similarity=0.226  Sum_probs=43.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCC
Q psy961           44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADG  100 (118)
Q Consensus        44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~  100 (118)
                      .+.++-++..+.++.+.+.+++++++++.++..++++.  ...+-|++.. +.+-.+
T Consensus       479 ~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La--~~~N~yy~~~-~Vl~~~  532 (566)
T TIGR00456       479 EEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA--SLFSSFYKAC-PVLDAE  532 (566)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHhcC-ccCCCC
Confidence            56678899999999999999999999999999999998  3466666654 445433

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	2e-14
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	7e-07
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	5e-05
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	3e-04

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 19/81 (23%), Positives = 30/81 (37%)

Query: 32  NAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLE 91
           +    QA +   +  D ++ SRL+  V      ++  +        Y L   E CD YLE
Sbjct: 592 SREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLE 651

Query: 92  CIKPVMADGSLIEKANAARTL 112
             KP +  G+          L
Sbjct: 652 AAKPALKAGNAHTLRTLEEVL 672

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 14/66 (21%), Positives = 31/66 (46%)

Query: 29  ADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDV 88
            D N   D   + ++  +D ++L+RL +  A+    ++ +++  +     N    EL + 
Sbjct: 660 NDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNF 719

Query: 89  YLECIK 94
           YL+  K
Sbjct: 720 YLDYGK 725

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 44  SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM-ADGSL 102
             +D W+L+R+ D +    +A + Y+  T   A  +  + +L   Y+   +     +   
Sbjct: 674 PEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDA 733

Query: 103 IEKANAARTL 112
           +++  A  TL
Sbjct: 734 LDREAAYATL 743

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 4   DRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNK 63
             V      + R+Y  +++  + +             V++  ID W+L RL  A+     
Sbjct: 692 KEVGKLRKQIERFYELISQFAEYEVKG---------NVELKDIDRWMLHRLNKAIKETTN 742

Query: 64  AFQKYEFNTVTSACYNLWLYELCDVYLE 91
           A +++   T     +   +      YL 
Sbjct: 743 ALEEFRTRTAVQWAFYS-IMNDLRWYLR 769

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	99.57
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	99.53
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	99.33
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	99.22
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	99.04
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	99.03
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	98.74
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	98.69
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	98.64
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	98.51
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	98.32
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	98.28
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	98.1
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	98.07
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	97.95
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	96.22

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=99.57  E-value=4.7e-15  Score=126.89  Aligned_cols=102  Identities=17%  Similarity=0.232  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      ++||+.+|.+.+..  +|+|..+.++...++.+|+||++++++++++++++|++|+|+.|++.|++|+++++|++|++++
T Consensus       647 kl~n~~r~~l~nl~--~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~  724 (917)
T 1ffy_A          647 KIRNTLRFMLGNIN--DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG  724 (917)
T ss_dssp             HHHHHHHHHHHTST--TCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred             HHHHHHHHHHhhhh--ccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47899999887754  4665322233334678999999999999999999999999999999999999889999999999


Q ss_pred             cccccCC--ChHHHHHHHHHHHHHhc
Q psy961           94 KPVMADG--SLIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~~--~~~~r~~a~~tL~~vl~  117 (118)
                      |+|+|+.  ++.+|++++++|+.+++
T Consensus       725 k~rl~~~~~~~~~r~~~~~~l~~~l~  750 (917)
T 1ffy_A          725 KDILYIEQRDSHIRRSMQTVLYQILV  750 (917)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHHHH
T ss_pred             chhhhccCCCcHHHHHHHHHHHHHHH
Confidence            9999974  45678899999999875

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=99.53  E-value=2.8e-14  Score=121.46  Aligned_cols=92  Identities=24%  Similarity=0.391  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhc
Q psy961           15 RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK   94 (118)
Q Consensus        15 ~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K   94 (118)
                      +||+.+|.+.+..  ++.|.     ...++.+|+||++++++++++++++|++|+|+.|++.|++|+|+++|+||+|++|
T Consensus       582 l~N~~rf~~~~~~--~~~~~-----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k  654 (862)
T 1gax_A          582 LYNAARFVLLSRE--GFQAK-----EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAK  654 (862)
T ss_dssp             HHHHHHHHHHHSS--SCCCC-----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             HHHHHHHHHhccc--CCCCc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcc
Confidence            6999888887654  24332     1236789999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCChHHHHHHHHHHHHHhc
Q psy961           95 PVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        95 ~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      +++|++    +++++.||+++|+
T Consensus       655 ~~l~~~----~~~~~~~l~~~l~  673 (862)
T 1gax_A          655 PALKAG----NAHTLRTLEEVLA  673 (862)
T ss_dssp             HHHHTT----BHHHHHHHHHHHH
T ss_pred             hhhhcc----HHHHHHHHHHHHH
Confidence            999865    5678899988875

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=99.33  E-value=1.5e-12  Score=110.17  Aligned_cols=101  Identities=17%  Similarity=0.248  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhcCCCCCCc-cccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           15 RWYGHVTELKKKQDADVNA-ALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        15 ~wn~~~f~l~~~~~~~f~~-~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      +||.+.+.+......++.| ....  ...+...|+|++++++++++++.++|++|+|+.|++.|++|+|+++|++|++.+
T Consensus       646 l~N~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~  723 (821)
T 1ile_A          646 LWNVYSFFVTYANLDRPDLKNPPP--PEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRN  723 (821)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCC--STTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHH
T ss_pred             HHHHHHHHHHhhccccCCcccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6888877542211123444 2111  224578999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCC-hHHHHHHHHHHHHHhc
Q psy961           94 KPVMADGS-LIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~~~-~~~r~~a~~tL~~vl~  117 (118)
                      |+++|+.. +.+|++++.+|+++++
T Consensus       724 k~~~~~~~~~~~r~~~~~~l~~~l~  748 (821)
T 1ile_A          724 RRRFWKNEDALDREAAYATLYEALV  748 (821)
T ss_dssp             HHHHHTCTTTSSTTHHHHHHHHHHH
T ss_pred             hhhcccCCCcHHHHHHHHHHHHHHH
Confidence            99999643 2346688899988874

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=99.22  E-value=6e-11  Score=95.79  Aligned_cols=97  Identities=9%  Similarity=0.057  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhc
Q psy961           15 RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK   94 (118)
Q Consensus        15 ~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K   94 (118)
                      +||...+.+....    ++.........++.+|+||++++++++++++++|++|+|++|++.|++|+  ++|++|++..|
T Consensus       379 l~N~~~r~~~~~~----~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~Y~~~~~  452 (542)
T 3u1f_A          379 LGNLVMRCTSAKI----NVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINAYVTDMA  452 (542)
T ss_dssp             HHHHHHHHHCTTT----STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhh----cccCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcC
Confidence            5776666554321    11212222345788999999999999999999999999999999999998  57999999999


Q ss_pred             c-cccCCChHHHHHHHHHHHHHhc
Q psy961           95 P-VMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        95 ~-~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      + ++...+..+++++++++.++++
T Consensus       453 pw~l~k~d~~~~~~~l~~~~~~l~  476 (542)
T 3u1f_A          453 PWKLVKTDPERLRTVLYITLEGVR  476 (542)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCHHHHHHHHHHHHHHHH
Confidence            8 5665566566667777666653

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=99.04  E-value=2.2e-09  Score=87.62  Aligned_cols=97  Identities=9%  Similarity=0.046  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhc-CCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHh
Q psy961           14 TRWYGHVTELKKK-QDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLEC   92 (118)
Q Consensus        14 ~~wn~~~f~l~~~-~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~   92 (118)
                      .+||...+.+... ..+++.|+     ...+...|+|++++++++++++.++|++|+|+.|++.|++|+  .+|++|++.
T Consensus       394 ~l~N~~~R~~~~~~~~~g~~p~-----~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~~~n~Y~~~  466 (564)
T 3kfl_A          394 TLGNLVSRCVAPKINVNGMWPE-----PAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--RSLNAYVTE  466 (564)
T ss_dssp             THHHHHHHHHCTTTSTTSBCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHHHh
Confidence            3577776665432 22233333     124578999999999999999999999999999999999998  479999999


Q ss_pred             hcc-cccCCChHHHHHHHHHHHHHhc
Q psy961           93 IKP-VMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        93 ~K~-~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      .|+ +|++++..+.++++.++..+++
T Consensus       467 ~kpW~l~~~~~~~~~~~~~~l~~~l~  492 (564)
T 3kfl_A          467 NAPWKLVKMDTARLGTVLYVTMEGLR  492 (564)
T ss_dssp             HCHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             cCChhhhcCCHHHHHHHHHHHHHHHH
Confidence            999 8887666556677888877764

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=99.03  E-value=8.7e-10  Score=89.24  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc-cccCCChHHHHHHHHHHHHHhc
Q psy961           42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP-VMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~-~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      .+...|+|++++++++++++.++|++|+|++|++.|++|+  ++|++|++..|+ ++..++..++.+++.++..+++
T Consensus       401 ~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~  475 (536)
T 4dlp_A          401 AFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLR  475 (536)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999998  689999999998 6665555555667777777653

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=98.74  E-value=4.6e-08  Score=84.21  Aligned_cols=94  Identities=16%  Similarity=0.170  Sum_probs=69.2

Q ss_pred             ccccchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHh
Q psy961            6 VSAPYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE   84 (118)
Q Consensus         6 ~~~~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~   84 (118)
                      +..+.+.+. +||...+.+.+.     .|.     ...++.+|+||++++++++++++++|++|+|+.|++.++.|+++.
T Consensus       694 ~~~~~~~l~rl~n~~~~~~~~~-----~~~-----~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~  763 (967)
T 1wz2_A          694 VGKLRKQIERFYELISQFAEYE-----VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND  763 (967)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSC-----CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC-----CCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            344445555 466666553221     111     123577999999999999999999999999999999887777765


Q ss_pred             hhHHHHHhhcccccCCChHHHHHHHHHHHHHhc
Q psy961           85 LCDVYLECIKPVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        85 ls~~Yle~~K~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                       +++|++.+|++-       +++++.+|+++|+
T Consensus       764 -~n~Yi~~~k~~~-------~~~~~~~l~~~l~  788 (967)
T 1wz2_A          764 -LRWYLRRTEGRD-------DEAKRYVLRTLAD  788 (967)
T ss_dssp             -HHHHHHHTTTCC-------CHHHHHHHHHHHH
T ss_pred             -HHHHHHhccchh-------HHHHHHHHHHHHH
Confidence             789999999641       2478888888875

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=98.69  E-value=7.3e-08  Score=80.74  Aligned_cols=73  Identities=11%  Similarity=0.220  Sum_probs=60.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCCCh-HHHHHHHHHHHHHh
Q psy961           42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSL-IEKANAARTLVTSI  116 (118)
Q Consensus        42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~~~-~~r~~a~~tL~~vl  116 (118)
                      .+...|+|++++++++++++.++|++|+|+.|++.|++|+  ++|++|++..|+.++..++ .+.+++.+++.+++
T Consensus       424 ~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l  497 (722)
T 1rqg_A          424 ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIV  497 (722)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999998  6899999999998876433 33344555555554

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=98.64  E-value=9.9e-08  Score=76.80  Aligned_cols=73  Identities=11%  Similarity=0.166  Sum_probs=58.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc-cccCCC---h-HHHHHHHHHHHHHh
Q psy961           42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP-VMADGS---L-IEKANAARTLVTSI  116 (118)
Q Consensus        42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~-~ly~~~---~-~~r~~a~~tL~~vl  116 (118)
                      .+...|+|++++++++++.+.++|++|+|+.|++.|++|+  ..+++|++..|+ +++++.   + .+.+++..++.+++
T Consensus       390 ~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l  467 (524)
T 2x1l_A          390 EFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVL--GAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVV  467 (524)
T ss_dssp             CCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999998  479999999999 677542   2 22234455555554

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=98.51  E-value=2.6e-07  Score=75.03  Aligned_cols=71  Identities=15%  Similarity=0.216  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccC---CChHHHHHHHHHHHHHhc
Q psy961           45 PIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD---GSLIEKANAARTLVTSIV  117 (118)
Q Consensus        45 ~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~---~~~~~r~~a~~tL~~vl~  117 (118)
                      ..|+|+++++++++++++++|++|+|+.|++.+++|+  ++|++|++..|+....   .+..++..++.++.++++
T Consensus       425 ~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~  498 (560)
T 3h99_A          425 LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFR  498 (560)
T ss_dssp             CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999999999998  7899999999985332   233445566667666654

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=98.32  E-value=2.8e-06  Score=71.75  Aligned_cols=67  Identities=21%  Similarity=0.319  Sum_probs=54.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCCChHHHHHH-HHHHHHHhc
Q psy961           42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANA-ARTLVTSIV  117 (118)
Q Consensus        42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~~~~~r~~a-~~tL~~vl~  117 (118)
                      .++..|+|++++++++++++.++|++|+|+.|++.++.++++. +++|++.+|++    +   + ++ +.+|+++++
T Consensus       721 ~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~-~n~yi~~~k~~----~---~-~~~~~~l~~~l~  788 (810)
T 1wkb_A          721 ELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND-LRWYLRRTEGR----D---D-EAKRYVLRTLAD  788 (810)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH-HHHHHHHTTTC----C---C-HHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHhcCc----c---h-hHHHHHHHHHHH
Confidence            3567899999999999999999999999999999886566665 78999999964    1   1 33 677777764

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=98.28  E-value=1.2e-06  Score=70.05  Aligned_cols=71  Identities=11%  Similarity=0.129  Sum_probs=56.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCC--ChHHHHHHHHHHHHHh
Q psy961           44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADG--SLIEKANAARTLVTSI  116 (118)
Q Consensus        44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~--~~~~r~~a~~tL~~vl  116 (118)
                      ...|+|++++++++++.+.++|++|+|+.|++.+++|+  ..+++|++..|+.....  +..+.+++..++.+++
T Consensus       372 ~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l  444 (497)
T 2csx_A          372 GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERKKEELQKVLYALVDGL  444 (497)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHH
Confidence            34699999999999999999999999999999999999  47999999999863322  2223345556665554

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=98.10  E-value=8.6e-06  Score=69.71  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             ccccccchhhHH-HHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHh
Q psy961            4 DRVSAPYTHLTR-WYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQ-KYEFNTVTSACYNLW   81 (118)
Q Consensus         4 ~~~~~~~~~l~~-wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e-~~~f~~a~~~i~~F~   81 (118)
                      ++++++.+.+.+ ||...+.+.....    +.   .+...++..|+|+++++++++++|+++|+ +|+|+.|++.|++|+
T Consensus       681 ~~ie~a~rfl~rlwn~~~~~~~~~~~----~~---~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv  753 (880)
T 4arc_A          681 SGVEGANRFLKRVWKLVYEHTAKGDV----AA---LNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM  753 (880)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCC----CC---CCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc----cc---cccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence            345666677764 7777666553211    11   11234678999999999999999999999 899999999999998


Q ss_pred             HHhhhH
Q psy961           82 LYELCD   87 (118)
Q Consensus        82 ~~~ls~   87 (118)
                       ++++.
T Consensus       754 -n~l~k  758 (880)
T 4arc_A          754 -NKLAK  758 (880)
T ss_dssp             -HHHHT
T ss_pred             -HHHHh
Confidence             66654

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=98.07  E-value=1.6e-06  Score=69.26  Aligned_cols=68  Identities=10%  Similarity=0.036  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccC-CChHHHHHHHHHHHHHh
Q psy961           47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD-GSLIEKANAARTLVTSI  116 (118)
Q Consensus        47 DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~-~~~~~r~~a~~tL~~vl  116 (118)
                      ++|++++++++++++.++|++|+|+.|++.|++|+  ..+++|++..|+.... ++..+.+++..++.+++
T Consensus       377 ~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l  445 (500)
T 2d5b_A          377 AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKKEPEEARAVLYRVVEGL  445 (500)
T ss_dssp             CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999  5799999999986442 23223345566666554

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=97.95  E-value=1.8e-05  Score=67.64  Aligned_cols=77  Identities=12%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             ccccchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHh
Q psy961            6 VSAPYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE   84 (118)
Q Consensus         6 ~~~~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~   84 (118)
                      +.++.+.+. +||...+.+....     |....++...++..|+|+++++++++++|+++|++|+|+.|++.|++|+ ++
T Consensus       681 v~~~~~~l~Rl~n~~~~~~~~~~-----~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~  754 (878)
T 2v0c_A          681 VQGAWRFLNRIYRRVAEDREALL-----ETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NA  754 (878)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-----TCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-----ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HH
Confidence            444445555 4776665544321     0000111224578999999999999999999999999999999999999 57


Q ss_pred             hhHH
Q psy961           85 LCDV   88 (118)
Q Consensus        85 ls~~   88 (118)
                      ++.+
T Consensus       755 l~k~  758 (878)
T 2v0c_A          755 LYEY  758 (878)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            7654

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=96.22  E-value=0.025  Score=45.18  Aligned_cols=49  Identities=18%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHH
Q psy961           42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLE   91 (118)
Q Consensus        42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle   91 (118)
                      .++..|+|++.++.++.+.+.+++++++++.+++.++++. ..++++|-+
T Consensus       368 ~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La-~~~n~fY~~  416 (464)
T 3fnr_A          368 SLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLA-ANFHKFYNE  416 (464)
T ss_dssp             TCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHH-HHHHHHHHH
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHh
Confidence            4555699999999999999999999999999999999997 688988865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1ffya1	273	a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (Il	1e-06

>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 273

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 43.1 bits (100), Expect = 1e-06
 Identities = 14/72 (19%), Positives = 33/72 (45%)

Query: 30  DVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVY 89
           D N   D   + ++  +D ++L+RL +  A+    ++ +++  +     N    EL + Y
Sbjct: 17  DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 76

Query: 90  LECIKPVMADGS 101
           L+  K ++    
Sbjct: 77  LDYGKDILYIEQ 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1ffya1	273	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	99.94
d1ilea1	180	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	99.91
d1ivsa2	218	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	99.87
d1h3na1	128	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	98.99
d1rqga1	210	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	98.69
d1pfva1	162	Methionyl-tRNA synthetase (MetRS) {Escherichia col	97.64
d2d5ba1	152	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	97.51

>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=2.3e-27  Score=176.31  Aligned_cols=102  Identities=17%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      ++||+++|.|.|+.  +|+|+.+.++..+++.+|||||++|+.++++|+++|++|+|++|++.|++|+|++||+|||+++
T Consensus         3 KirNt~RFlL~nl~--~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y~~~~   80 (273)
T d1ffya1           3 KIRNTLRFMLGNIN--DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG   80 (273)
T ss_dssp             HHHHHHHHHHHTST--TCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred             hHHHHHHHHHHhcc--CCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHHHhhc
Confidence            68999999998875  5999887777778999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCC--ChHHHHHHHHHHHHHhc
Q psy961           94 KPVMADG--SLIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~~--~~~~r~~a~~tL~~vl~  117 (118)
                      |+||||+  ++..|+++|+||++||+
T Consensus        81 Kdrly~~~~ds~~r~~~~~~l~~il~  106 (273)
T d1ffya1          81 KDILYIEQRDSHIRRSMQTVLYQILV  106 (273)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHH
Confidence            9999974  67889999999999985

>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=1.6e-25  Score=157.68  Aligned_cols=104  Identities=18%  Similarity=0.263  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHh
Q psy961           13 LTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLEC   92 (118)
Q Consensus        13 l~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~   92 (118)
                      .++||+.+|.+.+.+.++|+++.. .+.++++.+||||++++++++++|+++|++|+|++|++.+++|+|++||+||+|+
T Consensus         3 ~klWN~~rF~~~~~~~~~~~~~~~-~~~~~l~~~D~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~~~Y~e~   81 (180)
T d1ilea1           3 LTLWNVYSFFVTYANLDRPDLKNP-PPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRR   81 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCTTSC-CCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHH
T ss_pred             cHHHHHHHHHHHhccccCCCccCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhhHHHHHh
Confidence            478999999887654455666543 4456788999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCC-ChHHHHHHHHHHHHHhc
Q psy961           93 IKPVMADG-SLIEKANAARTLVTSIV  117 (118)
Q Consensus        93 ~K~~ly~~-~~~~r~~a~~tL~~vl~  117 (118)
                      +|+|+|++ ++..|++++.||++|++
T Consensus        82 ~K~~l~~~~~~~~~~~~~~~l~~il~  107 (180)
T d1ilea1          82 NRRRFWKNEDALDREAAYATLYEALV  107 (180)
T ss_dssp             HHHHHHTCTTTSSTTHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhHHHHHHHHHHHHH
Confidence            99999964 45668899999999885

>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=4.3e-22  Score=143.54  Aligned_cols=93  Identities=23%  Similarity=0.361  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961           14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI   93 (118)
Q Consensus        14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~   93 (118)
                      ++||+.+|.+.+..  +|+|+.     +..+.+|+||++++++++++++++|++|+|++|++.+++|+|++||+||+|++
T Consensus         3 KlwNa~rF~~~~~~--~~~~~~-----~~~~~~Dkwil~~l~~~i~~v~~~~~~y~f~~a~~~l~~F~~~~l~d~Y~e~~   75 (218)
T d1ivsa2           3 KLYNAARFVLLSRE--GFQAKE-----DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAA   75 (218)
T ss_dssp             HHHHHHHHHHHHSS--SCCCCB-----CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred             HHHHHHHHHHhCcC--CCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhHHHHHHHH
Confidence            58999999988754  566653     23577899999999999999999999999999999999999999999999999


Q ss_pred             cccccCCChHHHHHHHHHHHHHhc
Q psy961           94 KPVMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        94 K~~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      |+++++++.    +++.||+++++
T Consensus        76 k~~~~~~~~----~~~~~l~~~l~   95 (218)
T d1ivsa2          76 KPALKAGNA----HTLRTLEEVLA   95 (218)
T ss_dssp             HHHHHTTBH----HHHHHHHHHHH
T ss_pred             hhhcccccc----cccchhHHHHH
Confidence            999997754    46677777664

>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=4e-09  Score=68.62  Aligned_cols=48  Identities=15%  Similarity=0.237  Sum_probs=43.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHH
Q psy961           41 VKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVY   89 (118)
Q Consensus        41 ~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Y   89 (118)
                      ..++..|+|+++++++++++|+++|++|+|+.|++.+++|+ |.++++.
T Consensus        26 ~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~l~~f~-n~l~~~~   73 (128)
T d1h3na1          26 EALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NALYEYR   73 (128)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh-cccchhh
Confidence            45678999999999999999999999999999999999997 7777654

>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.69  E-value=7.1e-08  Score=67.58  Aligned_cols=74  Identities=12%  Similarity=0.240  Sum_probs=60.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc-cccCCChHHHHHHHHHHHHHhc
Q psy961           42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP-VMADGSLIEKANAARTLVTSIV  117 (118)
Q Consensus        42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~-~ly~~~~~~r~~a~~tL~~vl~  117 (118)
                      .++..|+|++.+++.+++++.++|++|+|++|++.+++++  ..+++|++-.+| .+...+..+..++.+++.++++
T Consensus        28 ~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~N~yi~~~~PW~l~k~~~~~~~~vl~~~~~~~~  102 (210)
T d1rqga1          28 ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVK  102 (210)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999998  459999999888 3444555555566666655543

>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=6.6e-05  Score=50.12  Aligned_cols=49  Identities=20%  Similarity=0.342  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc
Q psy961           45 PIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP   95 (118)
Q Consensus        45 ~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~   95 (118)
                      ..|..++..+..+.+++.++|++|+|++|++.+..++  ..++.|++-.+|
T Consensus        24 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~--~~~Nkyi~~~~P   72 (162)
T d1pfva1          24 LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAP   72 (162)
T ss_dssp             CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHhh
Confidence            3588899999999999999999999999999999998  679999999887

>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=4.7e-05  Score=50.30  Aligned_cols=42  Identities=10%  Similarity=0.149  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc
Q psy961           52 SRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP   95 (118)
Q Consensus        52 s~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~   95 (118)
                      .++..+++++.++|++|+|++|++.+++++  ..++.||+-.+|
T Consensus        34 ~~~~~~~~~~~~~~e~~~~~~al~~i~~~~--~~~N~yi~~~~P   75 (152)
T d2d5ba1          34 AEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKP   75 (152)
T ss_dssp             GGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            456788999999999999999999999998  569999998887