Psyllid ID: psy962

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAKA
cccEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEcccEEEEEEEEEccEEEccccccccEEEEEccccccccccccccccccccccccEEEEEEEEEEc
ccccEEEEEcEcccccccEEEEEEEccccEEEEEEEEccccEEcEEEEEccccccccccccccEcccccccccccccccccccEccccEEccccEEEEEEEEccccccccccccccEEEEEccccccccccccccccccccccEEEEEEcEEccc
MPAIKAVCVlnnepvkgtifftqehadspvkvtgeiqgleegnhgfhihefgdntngctsagphfnplgkdhgapsdadrhvgdLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLvvhadpddlgkgghelskttgnagariacgvIGIAKA
MPAIKAVCVLNNEPVKGTIFftqehadspVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGhelskttgnagariaCGVIGIAKA
MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAKA
***IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGC***********************VGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADP**************GNAGARIACGVIGI***
*PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAK*
MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAKA
**AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGK*G*ELS*****AGARIACGVIGIAKA
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MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query155 2.2.26 [Sep-21-2011]
P28755153 Superoxide dismutase [Cu- N/A N/A 0.967 0.980 0.721 5e-58
Q9U4X3153 Superoxide dismutase [Cu- N/A N/A 0.967 0.980 0.701 1e-56
Q9U4X5153 Superoxide dismutase [Cu- N/A N/A 0.967 0.980 0.701 1e-56
Q9U4X2153 Superoxide dismutase [Cu- N/A N/A 0.967 0.980 0.695 2e-56
P10791153 Superoxide dismutase [Cu- N/A N/A 0.967 0.980 0.701 3e-56
P41973153 Superoxide dismutase [Cu- N/A N/A 0.967 0.980 0.708 5e-56
Q95086152 Superoxide dismutase [Cu- yes N/A 0.967 0.986 0.695 5e-56
Q07182153 Superoxide dismutase [Cu- N/A N/A 0.961 0.973 0.713 8e-56
P61852153 Superoxide dismutase [Cu- N/A N/A 0.967 0.980 0.695 9e-56
P61854153 Superoxide dismutase [Cu- N/A N/A 0.967 0.980 0.695 9e-56
>sp|P28755|SODC_CERCA Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2 Back     alignment and function desciption
 Score =  223 bits (567), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 126/151 (83%), Gaps = 1/151 (0%)

Query: 4   IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGP 63
           +KAVCV+N + VKGT+ F Q+ A SPV VTGE+ GL +G HGFH+HEFGDNTNGCTSAGP
Sbjct: 3   VKAVCVINGD-VKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGP 61

Query: 64  HFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHAD 123
           HFNP G  HGAPSD +RH+GDLGNI A+ +   KVEI D +I+L G N+IVGRT+VVHAD
Sbjct: 62  HFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHAD 121

Query: 124 PDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
           PDDLGKGGHELSKTTGNAGAR+ CGVIGI K
Sbjct: 122 PDDLGKGGHELSKTTGNAGARLGCGVIGICK 152
Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
Ceratitis capitata (taxid: 7213)
EC: 1EC: .EC: 1EC: 5EC: .EC: 1EC: .EC: 1
>sp|Q9U4X3|SODC_DROYA Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3 Back     alignment and function description
>sp|Q9U4X5|SODC_DROOR Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3 Back     alignment and function description
>sp|Q9U4X2|SODC_DROTE Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3 Back     alignment and function description
>sp|P10791|SODC_DROVI Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2 Back     alignment and function description
>sp|P41973|SODC_DROWI Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2 Back     alignment and function description
>sp|Q95086|SODC_DROPS Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3 Back     alignment and function description
>sp|Q07182|SODC_CHYAM Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2 Back     alignment and function description
>sp|P61852|SODC_DROSI Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2 Back     alignment and function description
>sp|P61854|SODC_DROSE Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query155
251823681167 copper zinc superoxide dismutase [Diapho 0.993 0.922 0.993 3e-82
359843230154 superoxide dismutase [Schistocerca grega 0.980 0.987 0.769 2e-60
121543935153 putative superoxide dismutase Cu-Zn [Mac 0.987 1.0 0.740 7e-59
442756807154 Putative superoxide dismutase cu-zn [Ixo 0.980 0.987 0.718 1e-58
308208146156 Cu/Zn superoxide dismutase [Bemisia taba 0.967 0.961 0.746 2e-58
242247211152 superoxide dismutase [Cu-Zn]-like [Acyrt 0.974 0.993 0.741 9e-58
149898934154 superoxide dismutase [Triatoma infestans 0.993 1.0 0.735 9e-58
241607909154 superoxide dismutase Cu-Zn [Ixodes scapu 0.980 0.987 0.705 1e-57
56117738154 superoxide dismutase [Gryllotalpa orient 0.987 0.993 0.732 2e-57
427786439154 Putative amby-am-2533 superoxide dismuta 0.987 0.993 0.741 3e-57
>gi|251823681|dbj|BAH83704.1| copper zinc superoxide dismutase [Diaphorina citri] Back     alignment and taxonomy information
 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/154 (99%), Positives = 154/154 (100%)

Query: 1   MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTS 60
           MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTS
Sbjct: 14  MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTS 73

Query: 61  AGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVV 120
           AGPHFNPLGKDHGAP+DADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVV
Sbjct: 74  AGPHFNPLGKDHGAPADADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVV 133

Query: 121 HADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
           HADPDDLGKGGHELSKTTGNAGARIACGVIGIAK
Sbjct: 134 HADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 167

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|359843230|gb|AEV89750.1| superoxide dismutase [Schistocerca gregaria] Back     alignment and taxonomy information
>gi|121543935|gb|ABM55632.1| putative superoxide dismutase Cu-Zn [Maconellicoccus hirsutus] Back     alignment and taxonomy information
>gi|442756807|gb|JAA70562.1| Putative superoxide dismutase cu-zn [Ixodes ricinus] Back     alignment and taxonomy information
>gi|308208146|gb|ADO20320.1| Cu/Zn superoxide dismutase [Bemisia tabaci] Back     alignment and taxonomy information
>gi|242247211|ref|NP_001156243.1| superoxide dismutase [Cu-Zn]-like [Acyrthosiphon pisum] gi|239799399|dbj|BAH70622.1| ACYPI007471 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|149898934|gb|ABR27983.1| superoxide dismutase [Triatoma infestans] Back     alignment and taxonomy information
>gi|241607909|ref|XP_002405905.1| superoxide dismutase Cu-Zn [Ixodes scapularis] gi|215500702|gb|EEC10196.1| superoxide dismutase Cu-Zn [Ixodes scapularis] Back     alignment and taxonomy information
>gi|56117738|gb|AAV73809.1| superoxide dismutase [Gryllotalpa orientalis] Back     alignment and taxonomy information
>gi|427786439|gb|JAA58671.1| Putative amby-am-2533 superoxide dismutase cu-zn [Rhipicephalus pulchellus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query155
FB|FBgn0003462153 Sod "Superoxide dismutase" [Dr 0.967 0.980 0.695 1.1e-55
UNIPROTKB|F1N8Q1155 SOD1 "Superoxide dismutase [Cu 0.980 0.980 0.677 1.5e-53
UNIPROTKB|P80566154 SOD1 "Superoxide dismutase [Cu 0.980 0.987 0.677 1.5e-53
UNIPROTKB|P33431153 SOD1 "Superoxide dismutase [Cu 0.974 0.986 0.686 1.9e-53
UNIPROTKB|Q8HXP8154 SOD1 "Superoxide dismutase [Cu 0.980 0.987 0.673 2.4e-53
UNIPROTKB|P28757152 SODCC2 "Superoxide dismutase [ 0.954 0.973 0.673 3e-53
UNIPROTKB|Q8HXQ0154 SOD1 "Superoxide dismutase [Cu 0.980 0.987 0.666 4.9e-53
UNIPROTKB|Q8HXQ1154 SOD1 "Superoxide dismutase [Cu 0.980 0.987 0.666 4.9e-53
UNIPROTKB|Q8HXQ2154 SOD1 "Superoxide dismutase [Cu 0.980 0.987 0.666 4.9e-53
UNIPROTKB|Q8HXP9154 SOD1 "Superoxide dismutase [Cu 0.980 0.987 0.666 8e-53
FB|FBgn0003462 Sod "Superoxide dismutase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 105/151 (69%), Positives = 127/151 (84%)

Query:     4 IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGP 63
             +KAVCV+N +  KGT+FF QE + +PVKV+GE+ GL +G HGFH+HEFGDNTNGC S+GP
Sbjct:     3 VKAVCVINGD-AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGP 61

Query:    64 HFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHAD 123
             HFNP GK+HGAP D +RH+GDLGNI AT +   KV I DS I+L GA++I+GRT+VVHAD
Sbjct:    62 HFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHAD 121

Query:   124 PDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
              DDLG+GGHELSK+TGNAGARI CGVIGIAK
Sbjct:   122 ADDLGQGGHELSKSTGNAGARIGCGVIGIAK 152
GO:0019430 "removal of superoxide radicals" evidence=NAS
GO:0004784 "superoxide dismutase activity" evidence=IEA;NAS
GO:0008340 "determination of adult lifespan" evidence=IMP;TAS
GO:0005737 "cytoplasm" evidence=NAS
GO:0006801 "superoxide metabolic process" evidence=IEA;NAS
GO:0016209 "antioxidant activity" evidence=NAS
GO:0007568 "aging" evidence=TAS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0008270 "zinc ion binding" evidence=IBA
GO:0005507 "copper ion binding" evidence=IBA
GO:0005829 "cytosol" evidence=IBA
GO:0005634 "nucleus" evidence=IBA
GO:0005739 "mitochondrion" evidence=IBA
UNIPROTKB|F1N8Q1 SOD1 "Superoxide dismutase [Cu-Zn]" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P80566 SOD1 "Superoxide dismutase [Cu-Zn]" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P33431 SOD1 "Superoxide dismutase [Cu-Zn]" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP8 SOD1 "Superoxide dismutase [Cu-Zn]" [Callithrix jacchus (taxid:9483)] Back     alignment and assigned GO terms
UNIPROTKB|P28757 SODCC2 "Superoxide dismutase [Cu-Zn] 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXQ0 SOD1 "Superoxide dismutase [Cu-Zn]" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXQ1 SOD1 "Superoxide dismutase [Cu-Zn]" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXQ2 SOD1 "Superoxide dismutase [Cu-Zn]" [Macaca fuscata fuscata (taxid:9543)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP9 SOD1 "Superoxide dismutase [Cu-Zn]" [Cebus apella (taxid:9515)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9U4X3SODC_DROYA1, ., 1, 5, ., 1, ., 10.70190.96770.9803N/AN/A
Q9U4X2SODC_DROTE1, ., 1, 5, ., 1, ., 10.69530.96770.9803N/AN/A
P80566SODC_CHICK1, ., 1, 5, ., 1, ., 10.67300.98700.9935yesN/A
P28755SODC_CERCA1, ., 1, 5, ., 1, ., 10.72180.96770.9803N/AN/A
Q9U4X5SODC_DROOR1, ., 1, 5, ., 1, ., 10.70190.96770.9803N/AN/A
Q9U4X4SODC_DROER1, ., 1, 5, ., 1, ., 10.69530.96770.9803N/AN/A
P09670SODC_SHEEP1, ., 1, 5, ., 1, ., 10.65130.96120.9802N/AN/A
P08228SODC_MOUSE1, ., 1, 5, ., 1, ., 10.62740.98060.9870yesN/A
P82205SODC_BOMMO1, ., 1, 5, ., 1, ., 10.72250.98060.9870N/AN/A
P60052SODC_PANTR1, ., 1, 5, ., 1, ., 10.66010.98060.9870yesN/A
P04178SODC_PIG1, ., 1, 5, ., 1, ., 10.62740.97410.9869yesN/A
O04996SODC_SOLCS1, ., 1, 5, ., 1, ., 10.62660.96120.9738N/AN/A
Q8HXQ4SODC_PONPY1, ., 1, 5, ., 1, ., 10.66880.98060.9806N/AN/A
Q8HXQ2SODC_MACFU1, ., 1, 5, ., 1, ., 10.66660.98060.9870N/AN/A
Q8HXQ3SODC_HYLLA1, ., 1, 5, ., 1, ., 10.66010.98060.9870N/AN/A
Q8HXQ0SODC_MACMU1, ., 1, 5, ., 1, ., 10.66660.98060.9870yesN/A
Q8HXQ1SODC_MACFA1, ., 1, 5, ., 1, ., 10.66660.98060.9870N/AN/A
P61854SODC_DROSE1, ., 1, 5, ., 1, ., 10.69530.96770.9803N/AN/A
P41973SODC_DROWI1, ., 1, 5, ., 1, ., 10.70860.96770.9803N/AN/A
P23345SODC4_MAIZE1, ., 1, 5, ., 1, ., 10.64660.95480.9736N/AN/A
P61851SODC_DROME1, ., 1, 5, ., 1, ., 10.69530.96770.9803yesN/A
P33431SODC_CAVPO1, ., 1, 5, ., 1, ., 10.68620.97410.9869yesN/A
P61853SODC_DROMA1, ., 1, 5, ., 1, ., 10.69530.96770.9803N/AN/A
O46412SODC_CEREL1, ., 1, 5, ., 1, ., 10.65350.96770.9868N/AN/A
P28757SODC2_ORYSJ1, ., 1, 5, ., 1, ., 10.67330.95480.9736yesN/A
P10791SODC_DROVI1, ., 1, 5, ., 1, ., 10.70190.96770.9803N/AN/A
Q9SQL5SODC_ANACO1, ., 1, 5, ., 1, ., 10.640.95480.9736N/AN/A
O73872SODC_DANRE1, ., 1, 5, ., 1, ., 10.63570.96770.9740yesN/A
Q52RN5SODC_BOSMU1, ., 1, 5, ., 1, ., 10.66010.96770.9868N/AN/A
Q07796SODC_IPOBA1, ., 1, 5, ., 1, ., 10.62660.95480.9736N/AN/A
Q07182SODC_CHYAM1, ., 1, 5, ., 1, ., 10.71330.96120.9738N/AN/A
P23346SODC5_MAIZE1, ., 1, 5, ., 1, ., 10.640.95480.9736N/AN/A
P11428SODC2_MAIZE1, ., 1, 5, ., 1, ., 10.65100.95480.9801N/AN/A
O65768SODC_CARPA1, ., 1, 5, ., 1, ., 10.66660.95480.9736N/AN/A
P54407SODC_DROBS1, ., 1, 5, ., 1, ., 10.72020.92250.9862N/AN/A
Q8L5E0ALL5B_OLEEU1, ., 1, 5, ., 1, ., 10.61330.95480.9736N/AN/A
Q8HXP9SODC_CEBAP1, ., 1, 5, ., 1, ., 10.66660.98060.9870N/AN/A
Q8HXP8SODC_CALJA1, ., 1, 5, ., 1, ., 10.67320.98060.9870yesN/A
A2XGP6SODC1_ORYSI1, ., 1, 5, ., 1, ., 10.64660.95480.9736N/AN/A
Q8WNN6SODC_CANFA1, ., 1, 5, ., 1, ., 10.6250.96770.9803yesN/A
P61852SODC_DROSI1, ., 1, 5, ., 1, ., 10.69530.96770.9803N/AN/A
Q55GQ5SODC1_DICDI1, ., 1, 5, ., 1, ., 10.66440.96120.9738yesN/A
P07632SODC_RAT1, ., 1, 5, ., 1, ., 10.62090.98060.9870yesN/A
Q0DRV6SODC1_ORYSJ1, ., 1, 5, ., 1, ., 10.64660.95480.9736noN/A
P24669SODC_PINSY1, ., 1, 5, ., 1, ., 10.62090.97410.9805N/AN/A
Q95086SODC_DROPS1, ., 1, 5, ., 1, ., 10.69530.96770.9868yesN/A
P80174SODC_CARCR1, ., 1, 5, ., 1, ., 10.59880.98700.9161N/AN/A
P00442SODC_BOVIN1, ., 1, 5, ., 1, ., 10.65350.96770.9868yesN/A
P00443SODC_HORSE1, ., 1, 5, ., 1, ., 10.61840.97410.9805yesN/A
P00441SODC_HUMAN1, ., 1, 5, ., 1, ., 10.66010.98060.9870yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.15.1.10.979
3rd Layer1.15.10.983

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query155
cd00305144 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc s 2e-63
PLN02386152 PLN02386, PLN02386, superoxide dismutase [Cu-Zn] 4e-63
pfam00080140 pfam00080, Sod_Cu, Copper/zinc superoxide dismutas 2e-59
PLN02642164 PLN02642, PLN02642, copper, zinc superoxide dismut 3e-50
COG2032179 COG2032, SodC, Cu/Zn superoxide dismutase [Inorgan 5e-36
PLN02957238 PLN02957, PLN02957, copper, zinc superoxide dismut 1e-08
PRK10290173 PRK10290, PRK10290, superoxide dismutase; Provisio 7e-08
PRK15388177 PRK15388, PRK15388, Cu/Zn superoxide dismutase; Pr 2e-06
>gnl|CDD|238186 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc superoxide dismutase (SOD) Back     alignment and domain information 
 Score =  190 bits (485), Expect = 2e-63
 Identities = 89/145 (61%), Positives = 101/145 (69%), Gaps = 4/145 (2%)

Query: 5   KAVCVLNNEP--VKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAG 62
            AV VL      V GT+ FTQ+     V +TGE+ GL  G HGFHIHEFGD TNGCTSAG
Sbjct: 2   SAVAVLKGPDGKVVGTVTFTQQ--SGGVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAG 59

Query: 63  PHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHA 122
            HFNP GK HG P+D  RH GDLGNIVA  + VA V + D +ISL G N+I+GR+LVVHA
Sbjct: 60  GHFNPFGKKHGGPNDEGRHAGDLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHA 119

Query: 123 DPDDLGKGGHELSKTTGNAGARIAC 147
             DDLGKG  ELS  TGNAG R+AC
Sbjct: 120 GQDDLGKGPDELSGGTGNAGVRVAC 144

superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730]. Length = 144
>gnl|CDD|166027 PLN02386, PLN02386, superoxide dismutase [Cu-Zn] Back     alignment and domain information
>gnl|CDD|215700 pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC) Back     alignment and domain information
>gnl|CDD|178248 PLN02642, PLN02642, copper, zinc superoxide dismutase Back     alignment and domain information
>gnl|CDD|224943 COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase Back     alignment and domain information
>gnl|CDD|182357 PRK10290, PRK10290, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|185286 PRK15388, PRK15388, Cu/Zn superoxide dismutase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 155
PLN02386152 superoxide dismutase [Cu-Zn] 100.0
PLN02642164 copper, zinc superoxide dismutase 100.0
KOG0441|consensus154 100.0
PF00080142 Sod_Cu: Copper/zinc superoxide dismutase (SODC); I 100.0
cd00305144 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide 100.0
PRK15388177 Cu/Zn superoxide dismutase; Provisional 100.0
PRK10290173 superoxide dismutase; Provisional 100.0
COG2032179 SodC Cu/Zn superoxide dismutase [Inorganic ion tra 100.0
PLN02957238 copper, zinc superoxide dismutase 100.0
KOG4656|consensus247 100.0
PF07452119 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after 85.69
smart00754118 CHRD A domain in the BMP inhibitor chordin and in 80.74
>PLN02386 superoxide dismutase [Cu-Zn] Back     alignment and domain information 
Probab=100.00  E-value=4.3e-52  Score=312.54  Aligned_cols=149  Identities=64%  Similarity=1.115  Sum_probs=142.8

Q ss_pred             eeEEEEEcCC-CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q psy962            4 IKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHV   82 (155)
Q Consensus         4 ~~Ava~l~~~-~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~~   82 (155)
                      .+|+|.|+++ .++|+|+|+|.+++ .+.|+++|+||+||.|+|||||+|+|+++|+|||+||||.++.|+.|.+..+|+
T Consensus         2 ~~a~a~~~~~~~v~G~v~f~q~~~g-~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~   80 (152)
T PLN02386          2 VKAVAVLNSSEGVKGTIFFTQEGDG-PTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHA   80 (152)
T ss_pred             ceEEEEEcCCCCCEEEEEEEEcCCC-CEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCcc
Confidence            6899999987 69999999998764 699999999999999999999999999999999999999999999999889999


Q ss_pred             CCcCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEee
Q psy962           83 GDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIA  153 (155)
Q Consensus        83 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~~  153 (155)
                      ||||||.++++|.+++.+++++++|.++++|+|||||||+.+|||++++++.|+++|++|+|||||||++.
T Consensus        81 GDLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~  151 (152)
T PLN02386         81 GDLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ  151 (152)
T ss_pred             ccccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999975

>PLN02642 copper, zinc superoxide dismutase Back     alignment and domain information
>KOG0441|consensus Back     alignment and domain information
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide [] Back     alignment and domain information
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD) Back     alignment and domain information
>PRK15388 Cu/Zn superoxide dismutase; Provisional Back     alignment and domain information
>PRK10290 superoxide dismutase; Provisional Back     alignment and domain information
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02957 copper, zinc superoxide dismutase Back     alignment and domain information
>KOG4656|consensus Back     alignment and domain information
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins Back     alignment and domain information
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query155
3l9e_A154 Crystal Structures Of Holo And Cu-Deficient CuZNSOD 9e-57
3l9y_A154 Crystal Structures Of Holo And Cu-Deficient CuZNSOD 7e-56
2wko_F154 Structure Of Metal Loaded Pathogenic Sod1 Mutant G9 2e-53
2c9s_A153 1.24 Angstroms Resolution Structure Of Zn-Zn Human 3e-53
3gzp_A153 Human Sod1 G93a Metal-Free Variant Length = 153 4e-53
3gzo_A154 Human Sod1 G93a Variant Length = 154 4e-53
2zky_A159 Crystal Structure Of Human Cu-Zn Superoxide Dismuta 4e-53
4b3e_A154 Structure Of Copper-Zinc Superoxide Dismutase Compl 4e-53
1hl4_A154 The Structure Of Apo Type Human Cu, Zn Superoxide D 6e-53
1hl5_A153 The Structure Of Holo Type Human Cu, Zn Superoxide 6e-53
3gtv_A153 Human-Mouse Sod1 Chimera Length = 153 6e-53
2wyz_A153 L38v Sod1 Mutant Complexed With Ump Length = 153 9e-53
1ozu_A153 Crystal Structure Of Familial Als Mutant S134n Of H 1e-52
1uxl_A153 I113t Mutant Of Human Sod1 Length = 153 1e-52
2wyt_A153 1.0 A Resolution Structure Of L38v Sod1 Mutant Leng 2e-52
1n18_A154 Thermostable Mutant Of Human Superoxide Dismutase, 2e-52
3qqd_A154 Human Sod1 H80r Variant, P212121 Crystal Form Lengt 2e-52
1sos_A154 Atomic Structures Of Wild-type And Thermostable Mut 2e-52
1l3n_A153 The Solution Structure Of Reduced Dimeric Copper Zi 2e-52
1fun_A153 Superoxide Dismutase Mutant With Lys 136 Replaced B 2e-52
1uxm_A153 A4v Mutant Of Human Sod1 Length = 153 2e-52
2vr8_A154 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 2e-52
3gzq_A154 Human Sod1 A4v Metal-Free Variant Length = 154 2e-52
3cqq_A153 Human Sod1 G85r Variant, Structure Ii Length = 153 2e-52
3ltv_A153 Mouse-Human Sod1 Chimera Length = 153 2e-52
3gtt_A153 Mouse Sod1 Length = 153 2e-52
3ecw_A153 Crystal Structure Of The Als-Related Pathological M 2e-52
1oez_W153 Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismu 3e-52
3h2q_A153 Human Sod1 H80r Variant, P21 Crystal Form Length = 3e-52
1p1v_A153 Crystal Structure Of Fals-Associated Human Copper-Z 3e-52
2gbt_A153 C6aC111A CUZN SUPEROXIDE DISMUTASE Length = 153 3e-52
2vr7_A154 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 3e-52
2vr6_A153 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 3e-52
1azv_A153 Familial Als Mutant G37r Cuznsod (Human) Length = 1 3e-52
2zkw_A159 Crystal Structure Of Human Cu-Zn Superoxide Dismuta 4e-52
4a7g_A153 Structure Of Human I113t Sod1 Mutant Complexed With 4e-52
1n19_A154 Structure Of The Hsod A4v Mutant Length = 154 5e-52
3h2p_A153 Human Sod1 D124v Variant Length = 153 6e-52
1ptz_A153 Crystal Structure Of The Human Cu, Zn Superoxide Di 9e-52
3gqf_A153 Structural And Biophysical Properties Of The Pathog 1e-51
2nnx_A154 Crystal Structure Of The H46r, H48q Double Mutant O 1e-51
2r27_A154 Constitutively Zinc-Deficient Mutant Of Human Super 5e-51
1e9o_B152 Crystal Structure Of Bovine Sod - 1 Of 3 Length = 1 6e-51
1e9q_B151 Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Leng 7e-51
1sda_O152 Crystal Structure Of Peroxynitrite-Modified Bovine 9e-51
1q0e_A152 Atomic Resolution (1.15 ) Crystal Structure Of Bovi 1e-50
1cob_A151 Crystal Structure Solution And Refinement Of The Se 1e-50
1mfm_A153 Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC 1e-50
1e9p_B151 Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angst 1e-50
1e9o_A152 Crystal Structure Of Bovine Sod - 1 Of 3 Length = 1 1e-50
1cb4_A151 Crystal Structure Of Copper, Zinc Superoxide Dismut 1e-50
1e9q_A151 Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Leng 1e-50
1e9p_A151 Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angst 2e-50
2gbu_A153 C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase 2e-50
2xjk_A153 Monomeric Human Cu,Zn Superoxide Dismutase Length = 3e-50
1ba9_A153 The Solution Structure Of Reduced Monomeric Superox 3e-50
3mnd_A152 Crystallographic Analysis Of The Cystosolic CuZN SU 6e-50
3sod_O152 Changes In Crystallographic Structure And Thermosta 9e-50
4bcy_A153 Monomeric Human Cu,zn Superoxide Dismutase, Mutatio 2e-49
3f7k_A152 X-Ray Crystal Structure Of An Alvinella Pompejana C 2e-49
1dsw_A153 The Solution Structure Of A Monomeric, Reduced Form 1e-48
1to4_A156 Structure Of The Cytosolic Cu,Zn Sod From S. Manson 3e-48
2xjl_A153 Monomeric Human Cu,Zn Superoxide Dismutase Without 7e-48
2q2l_A152 Crystal Structure Of Superoxide Dismutase From P. A 3e-47
3hff_A153 Monomeric Human Cu,Zn Superoxide Dismutase Without 3e-47
3kbe_A157 Metal-Free C. Elegans Cu,Zn Superoxide Dismutase Le 1e-44
1xso_A150 Three-Dimensional Structure Of Xenopus Laevis Cu,Zn 4e-44
3ce1_A168 Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE 5e-44
1srd_A154 Three-Dimensional Structure Of Cu,Zn-Superoxide Dis 6e-44
3km1_A154 Zinc-Reconstituted Tomato Chloroplast Superoxide Di 6e-42
1f1g_A154 Crystal Structure Of Yeast Cuznsod Exposed To Nitri 2e-38
1sdy_A153 Structure Solution And Molecular Dynamics Refinemen 2e-38
2e46_A157 Crystal Structure Analysis Of The Clock Protein Ea4 5e-38
2e47_A156 Crystal Structure Analysis Of The Clock Protein Ea4 5e-38
1f1a_A154 Crystal Structure Of Yeast H48q Cuznsod Fals Mutant 8e-38
1f18_A154 Crystal Structure Of Yeast Copper-Zinc Superoxide D 1e-37
1jk9_A153 Heterodimer Between H48f-Ysod1 And Yccs Length = 15 1e-37
1f1d_A154 Crystal Structure Of Yeast H46c Cuznsod Mutant Leng 3e-37
1b4t_A153 H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPE 3e-37
1do5_A154 Human Copper Chaperone For Superoxide Dismutase Dom 1e-31
4bcz_A110 Monomeric Human Cu,zn Superoxide Dismutase, Loops I 4e-21
2jlp_A222 Crystal Structure Of Human Extracellular Copper-Zin 1e-20
4bd4_A110 Monomeric Human Cu,zn Superoxide Dismutase, Loops I 4e-20
1xtm_B175 Crystal Structure Of The Double Mutant Y88h-p104h O 2e-09
1oaj_A151 Active Site Copper And Zinc Ions Modulate The Quate 2e-09
1yai_A151 X-Ray Structure Of A Bacterial Copper,Zinc Superoxi 2e-09
1ibd_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 6e-09
1xtl_B175 Crystal Structure Of P104h Mutant Of Sod-Like Prote 6e-09
1oal_A151 Active Site Copper And Zinc Ions Modulate The Quate 7e-09
1ibf_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 9e-09
1bzo_A151 Three-Dimensional Structure Of Prokaryotic Cu,Zn Su 1e-08
1ib5_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 1e-08
1ibb_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 2e-08
1ibh_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 2e-08
2aqs_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 2e-08
2aqt_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 3e-08
2aqr_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 4e-08
2aqn_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 4e-08
2aqq_A164 CuZN SUPEROXID DISMUTATE FROM NEISSERIA MENINGITIDI 4e-08
1s4i_B175 Crystal Structure Of A Sod-like Protein From Bacill 8e-08
1u3n_A162 A Sod-Like Protein From B. Subtilis, Unstructured I 8e-08
2aqp_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 2e-07
2aqm_A154 CuZN SUPEROXIDE DISMUTASE FROM BRUCELLA ABORTUS Len 5e-07
1eso_A154 Monomeric Cu,Zn Superoxide Dismutase From Escherich 7e-06
2k4w_A154 The Solution Structure Of The Monomeric Copper, Zin 4e-05
2wwn_A169 Yersinia Pseudotuberculosis Superoxide Dismutase C 5e-05
1eqw_A156 Crystal Structure Of Salmonella Typhimurium Cu,Zn S 7e-05
1z9p_A155 X-Ray Structure Of A Cu-Zn Superoxide Dismutase Fro 7e-05
1z9n_A177 X-Ray Structure Of A Cu-Zn Superoxide Dismutase Fro 9e-05
2aps_A162 CuZN SUPEROXIDE DISMUTASE FROM ACTINOBACILLUS Pleur 1e-04
>pdb|3L9E|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM THE SILKWORM Bombyx Mori And The Implications In Amyotrophic Lateral Sclerosis Length = 154 Back     alignment and structure 
Iteration: 1

 Score =  215 bits (547), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 125/155 (80%), Gaps = 3/155 (1%)
Query: 1   MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTS 60
           MPA KAVCVL  + V GT+FF Q+   SPV V+GE+QGL +G HGFH+HEFGDNTNGCTS
Sbjct: 1   MPA-KAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTS 58
Query: 61  AGPHFNPLGKDHGAPSDADRHVGDLGNIVATANK-VAKVEIEDSIISLTGANNIVGRTLV 119
           AG HFNP  +DHG PS A RHVGDLGNI A  +  V KV I+DS ISL G N+I+GRTLV
Sbjct: 59  AGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 118
Query: 120 VHADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
           VHADPDDLG GGHELSKTTGNAG RIACGVIG+AK
Sbjct: 119 VHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAK 153
>pdb|3L9Y|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM The Silkworm Bombyx Mori And The Implications In Amyotrophic Lateral Sclerosis Length = 154 Back     alignment and structure
>pdb|2WKO|F Chain F, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a Length = 154 Back     alignment and structure
>pdb|2C9S|A Chain A, 1.24 Angstroms Resolution Structure Of Zn-Zn Human Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3GZP|A Chain A, Human Sod1 G93a Metal-Free Variant Length = 153 Back     alignment and structure
>pdb|3GZO|A Chain A, Human Sod1 G93a Variant Length = 154 Back     alignment and structure
>pdb|2ZKY|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant G93a Length = 159 Back     alignment and structure
>pdb|4B3E|A Chain A, Structure Of Copper-Zinc Superoxide Dismutase Complexed With Bicarbonate. Length = 154 Back     alignment and structure
>pdb|1HL4|A Chain A, The Structure Of Apo Type Human Cu, Zn Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1HL5|A Chain A, The Structure Of Holo Type Human Cu, Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3GTV|A Chain A, Human-Mouse Sod1 Chimera Length = 153 Back     alignment and structure
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump Length = 153 Back     alignment and structure
>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution Length = 153 Back     alignment and structure
>pdb|1UXL|A Chain A, I113t Mutant Of Human Sod1 Length = 153 Back     alignment and structure
>pdb|2WYT|A Chain A, 1.0 A Resolution Structure Of L38v Sod1 Mutant Length = 153 Back     alignment and structure
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a, C111s Length = 154 Back     alignment and structure
>pdb|3QQD|A Chain A, Human Sod1 H80r Variant, P212121 Crystal Form Length = 154 Back     alignment and structure
>pdb|1SOS|A Chain A, Atomic Structures Of Wild-type And Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc Sod: The Structural Effects Of Dimerization Length = 153 Back     alignment and structure
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e, C6a, C111s) Length = 153 Back     alignment and structure
>pdb|1UXM|A Chain A, A4v Mutant Of Human Sod1 Length = 153 Back     alignment and structure
>pdb|2VR8|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.36 A Resolution Length = 154 Back     alignment and structure
>pdb|3GZQ|A Chain A, Human Sod1 A4v Metal-Free Variant Length = 154 Back     alignment and structure
>pdb|3CQQ|A Chain A, Human Sod1 G85r Variant, Structure Ii Length = 153 Back     alignment and structure
>pdb|3LTV|A Chain A, Mouse-Human Sod1 Chimera Length = 153 Back     alignment and structure
>pdb|3GTT|A Chain A, Mouse Sod1 Length = 153 Back     alignment and structure
>pdb|3ECW|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1) Length = 153 Back     alignment and structure
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3H2Q|A Chain A, Human Sod1 H80r Variant, P21 Crystal Form Length = 153 Back     alignment and structure
>pdb|1P1V|A Chain A, Crystal Structure Of Fals-Associated Human Copper-Zinc Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a Length = 153 Back     alignment and structure
>pdb|2GBT|A Chain A, C6aC111A CUZN SUPEROXIDE DISMUTASE Length = 153 Back     alignment and structure
>pdb|2VR7|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.58 A Resolution Length = 154 Back     alignment and structure
>pdb|2VR6|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.3 A Resolution Length = 153 Back     alignment and structure
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human) Length = 153 Back     alignment and structure
>pdb|2ZKW|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant G85r In Space Group P21 Length = 159 Back     alignment and structure
>pdb|4A7G|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 4- Methylpiperazin-1-Yl)quinazoline In The P21 Space Group Length = 153 Back     alignment and structure
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant Length = 154 Back     alignment and structure
>pdb|3H2P|A Chain A, Human Sod1 D124v Variant Length = 153 Back     alignment and structure
>pdb|1PTZ|A Chain A, Crystal Structure Of The Human Cu, Zn Superoxide Dismutase, Familial Amyotrophic Lateral Sclerosis (Fals) Mutant H43r Length = 153 Back     alignment and structure
>pdb|3GQF|A Chain A, Structural And Biophysical Properties Of The Pathogenic Sod1 Variant H46rH48Q Length = 153 Back     alignment and structure
>pdb|2NNX|A Chain A, Crystal Structure Of The H46r, H48q Double Mutant Of Human [cu-Zn] Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|2R27|A Chain A, Constitutively Zinc-Deficient Mutant Of Human Superoxide Dismutase (Sod), C6a, H80s, H83s, C111s Length = 154 Back     alignment and structure
>pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3 Length = 152 Back     alignment and structure
>pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Length = 151 Back     alignment and structure
>pdb|1SDA|O Chain O, Crystal Structure Of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase Length = 152 Back     alignment and structure
>pdb|1Q0E|A Chain A, Atomic Resolution (1.15 ) Crystal Structure Of Bovine Copper, Zinc Superoxide Dismutase Length = 152 Back     alignment and structure
>pdb|1COB|A Chain A, Crystal Structure Solution And Refinement Of The Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase At 2.0 Angstroms Resolution Length = 151 Back     alignment and structure
>pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC Resolution Length = 153 Back     alignment and structure
>pdb|1E9P|B Chain B, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3 Of 3) Length = 151 Back     alignment and structure
>pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3 Length = 152 Back     alignment and structure
>pdb|1CB4|A Chain A, Crystal Structure Of Copper, Zinc Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Length = 151 Back     alignment and structure
>pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3 Of 3) Length = 151 Back     alignment and structure
>pdb|2GBU|A Chain A, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|2XJK|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1BA9|A Chain A, The Solution Structure Of Reduced Monomeric Superoxide Dismutase, Nmr, 36 Structures Length = 153 Back     alignment and structure
>pdb|3MND|A Chain A, Crystallographic Analysis Of The Cystosolic CuZN SUPEROXIDE DISMUTASE From Taenia Solium Length = 152 Back     alignment and structure
>pdb|3SOD|O Chain O, Changes In Crystallographic Structure And Thermostability Of A Cu,Zn Superoxide Dismutase Mutant Resulting From The Removal Of Buried Cysteine Length = 152 Back     alignment and structure
>pdb|4BCY|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Mutation H43f Length = 153 Back     alignment and structure
>pdb|3F7K|A Chain A, X-Ray Crystal Structure Of An Alvinella Pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex Length = 152 Back     alignment and structure
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of Human Copper, Zinc Superoxide Dismutase Bearing The Same Charge As The Native Protein Length = 153 Back     alignment and structure
>pdb|1TO4|A Chain A, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni Length = 156 Back     alignment and structure
>pdb|2XJL|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Cu Ligands Length = 153 Back     alignment and structure
>pdb|2Q2L|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Atrosanguina Length = 152 Back     alignment and structure
>pdb|3HFF|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Zn Ligands Length = 153 Back     alignment and structure
>pdb|3KBE|A Chain A, Metal-Free C. Elegans Cu,Zn Superoxide Dismutase Length = 157 Back     alignment and structure
>pdb|1XSO|A Chain A, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography At 1.5 Angstroms Resolution Length = 150 Back     alignment and structure
>pdb|3CE1|A Chain A, Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE FROM Cryptococcus Liquefaciens Strain N6 Length = 168 Back     alignment and structure
>pdb|1SRD|A Chain A, Three-Dimensional Structure Of Cu,Zn-Superoxide Dismutase From Spinach At 2.0 Angstroms Resolution Length = 154 Back     alignment and structure
>pdb|3KM1|A Chain A, Zinc-Reconstituted Tomato Chloroplast Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1F1G|A Chain A, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide Length = 154 Back     alignment and structure
>pdb|1SDY|A Chain A, Structure Solution And Molecular Dynamics Refinement Of The Yeast Cu,Zn Enzyme Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|2E46|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4 Length = 157 Back     alignment and structure
>pdb|2E47|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4 (Glycosylation Form) Length = 156 Back     alignment and structure
>pdb|1F1A|A Chain A, Crystal Structure Of Yeast H48q Cuznsod Fals Mutant Analog Length = 154 Back     alignment and structure
>pdb|1F18|A Chain A, Crystal Structure Of Yeast Copper-Zinc Superoxide Dismutase Mutant Gly85arg Length = 154 Back     alignment and structure
>pdb|1JK9|A Chain A, Heterodimer Between H48f-Ysod1 And Yccs Length = 153 Back     alignment and structure
>pdb|1F1D|A Chain A, Crystal Structure Of Yeast H46c Cuznsod Mutant Length = 154 Back     alignment and structure
>pdb|1B4T|A Chain A, H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298k) Structure Length = 153 Back     alignment and structure
>pdb|1DO5|A Chain A, Human Copper Chaperone For Superoxide Dismutase Domain Ii Length = 154 Back     alignment and structure
>pdb|4BCZ|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And Vii Deleted, Apo Form. Length = 110 Back     alignment and structure
>pdb|2JLP|A Chain A, Crystal Structure Of Human Extracellular Copper-Zinc Superoxide Dismutase. Length = 222 Back     alignment and structure
>pdb|4BD4|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And Vii Deleted, Apo Form, Mutant H43f Length = 110 Back     alignment and structure
>pdb|1XTM|B Chain B, Crystal Structure Of The Double Mutant Y88h-p104h Of A Sod-like Protein From Bacillus Subtilis. Length = 175 Back     alignment and structure
>pdb|1OAJ|A Chain A, Active Site Copper And Zinc Ions Modulate The Quaternary Structure Of Prokaryotic Cu,Zn Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1YAI|A Chain A, X-Ray Structure Of A Bacterial Copper,Zinc Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1IBD|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant V29a Length = 151 Back     alignment and structure
>pdb|1XTL|B Chain B, Crystal Structure Of P104h Mutant Of Sod-Like Protein From Bacillus Subtilis. Length = 175 Back     alignment and structure
>pdb|1OAL|A Chain A, Active Site Copper And Zinc Ions Modulate The Quaternary Structure Of Prokaryotic Cu,Zn Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1IBF|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant V29g Length = 151 Back     alignment and structure
>pdb|1BZO|A Chain A, Three-Dimensional Structure Of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography Length = 151 Back     alignment and structure
>pdb|1IB5|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83y Length = 151 Back     alignment and structure
>pdb|1IBB|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83f Length = 151 Back     alignment and structure
>pdb|1IBH|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant M41i Length = 151 Back     alignment and structure
>pdb|2AQS|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91E, K94e Double Mutant Length = 164 Back     alignment and structure
>pdb|2AQT|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91Q, K94q Double Mutant Length = 164 Back     alignment and structure
>pdb|2AQR|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91Q Mutant Length = 164 Back     alignment and structure
>pdb|2AQN|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS Length = 164 Back     alignment and structure
>pdb|2AQQ|A Chain A, CuZN SUPEROXID DISMUTATE FROM NEISSERIA MENINGITIDIS K91E MUTANT Length = 164 Back     alignment and structure
>pdb|1S4I|B Chain B, Crystal Structure Of A Sod-like Protein From Bacillus Subtilis Length = 175 Back     alignment and structure
>pdb|1U3N|A Chain A, A Sod-Like Protein From B. Subtilis, Unstructured In Solution, Becomes Ordered In The Crystal: Implications For Function And For Fibrillogenesis Length = 162 Back     alignment and structure
>pdb|2AQP|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS E73A MUTANT Length = 164 Back     alignment and structure
>pdb|2AQM|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM BRUCELLA ABORTUS Length = 154 Back     alignment and structure
>pdb|1ESO|A Chain A, Monomeric Cu,Zn Superoxide Dismutase From Escherichia Coli Length = 154 Back     alignment and structure
>pdb|2K4W|A Chain A, The Solution Structure Of The Monomeric Copper, Zinc Superox Dismutase From Salmonella Enterica Length = 154 Back     alignment and structure
>pdb|2WWN|A Chain A, Yersinia Pseudotuberculosis Superoxide Dismutase C With Bound Azide Length = 169 Back     alignment and structure
>pdb|1EQW|A Chain A, Crystal Structure Of Salmonella Typhimurium Cu,Zn Superoxide Dismutase Length = 156 Back     alignment and structure
>pdb|1Z9P|A Chain A, X-Ray Structure Of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi Length = 155 Back     alignment and structure
>pdb|1Z9N|A Chain A, X-Ray Structure Of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi With Haem Bound At The Dimer Interface Length = 177 Back     alignment and structure
>pdb|2APS|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM ACTINOBACILLUS Pleuropneumoniae Length = 162 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query155
1to4_A156 Superoxide dismutase; beta-barrel, oxidoreductase; 2e-77
2wyt_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, dise 1e-76
3f7l_A152 Copper,zinc superoxide dismutase; oxidoreductase ( 2e-76
3kbe_A157 Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis 8e-76
3pu7_A154 Superoxide dismutase [CU-ZN], chloroplastic; oxido 4e-75
2e47_A156 EA4, TIME interVal measuring enzyme TIME; motallop 4e-75
3l9y_A154 Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY 8e-75
2q2l_A152 Superoxide dismutase; SOD, SAD, antioxidant, oxido 9e-75
1do5_A154 Human copper chaperone for superoxide dismutase do 3e-74
1xso_A150 Copper,zinc superoxide dismutase; oxidoreductase ( 2e-73
3ce1_A168 Superoxide dismutase [CU-ZN]; greek-KEY beta barre 2e-73
1f1g_A154 Cuznsod, copper-zinc superoxide dismutase; nitric 4e-73
1xtm_B175 Hypothetical superoxide dismutase-like protein YO; 5e-61
1pzs_A208 Superoxide dismutase [CU-ZN]; Cu-protein, beta cor 3e-59
1eso_A154 SOD, Cu, Zn superoxide dismutase; oxidoreductase, 1e-58
2aqm_A154 Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10 3e-58
1oal_A151 Superoxide dismutase; oxidoreductase, prokaryotic 8e-58
2aqp_A164 Superoxide dismutase [CU-ZN]; electrostatic guidan 3e-57
1eqw_A156 Cu,Zn superoxide dismutase; greek KEY B-barrel, ox 2e-56
1z9n_A177 Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid 2e-55
2jlp_A222 Extracellular superoxide dismutase (Cu-Zn); glycol 3e-55
1ej8_A140 Lys7; beta barrel, copper chaperone for SOD, domai 7e-42
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 1e-38
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 2e-38
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Length = 156 Back     alignment and structure
 Score =  225 bits (576), Expect = 2e-77
 Identities = 90/154 (58%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 2   PAIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTS 60
             +KAVCV+     VKG + FTQE  + PV V  E  GL+ G HGFH+HEFGD TNGCTS
Sbjct: 2   SNMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTS 61

Query: 61  AGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVV 120
           AG HFNP  ++HGAP D+ RHVGDLGN+VA A+  A     D +ISL G+++I+GR++V+
Sbjct: 62  AGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVI 121

Query: 121 HADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
           H + DDLG+GGHELSK TGNAG R+ACGV+G+A 
Sbjct: 122 HENEDDLGRGGHELSKVTGNAGGRLACGVVGLAA 155
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Length = 153 Back     alignment and structure
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A Length = 152 Back     alignment and structure
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} PDB: 3kbf_A Length = 157 Back     alignment and structure
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 1srd_A Length = 154 Back     alignment and structure
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Length = 156 Back     alignment and structure
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A Length = 154 Back     alignment and structure
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Length = 152 Back     alignment and structure
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Length = 154 Back     alignment and structure
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Length = 150 Back     alignment and structure
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Length = 168 Back     alignment and structure
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Length = 154 Back     alignment and structure
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Length = 175 Back     alignment and structure
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Length = 208 Back     alignment and structure
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Length = 154 Back     alignment and structure
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Length = 154 Back     alignment and structure
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Length = 151 Back     alignment and structure
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Length = 164 Back     alignment and structure
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Length = 156 Back     alignment and structure
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Length = 177 Back     alignment and structure
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Length = 222 Back     alignment and structure
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Length = 140 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query155
3l9y_A154 Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY 100.0
4a7u_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, amyo 100.0
3pu7_A154 Superoxide dismutase [CU-ZN], chloroplastic; oxido 100.0
3f7l_A152 Copper,zinc superoxide dismutase; oxidoreductase ( 100.0
3kbe_A157 Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis 100.0
2q2l_A152 Superoxide dismutase; SOD, SAD, antioxidant, oxido 100.0
1to4_A156 Superoxide dismutase; beta-barrel, oxidoreductase; 100.0
2wyt_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, dise 100.0
1f1g_A154 Cuznsod, copper-zinc superoxide dismutase; nitric 100.0
1xso_A150 Copper,zinc superoxide dismutase; oxidoreductase ( 100.0
2e47_A156 EA4, TIME interVal measuring enzyme TIME; motallop 100.0
3ce1_A168 Superoxide dismutase [CU-ZN]; greek-KEY beta barre 100.0
1do5_A154 Human copper chaperone for superoxide dismutase do 100.0
1xtm_B175 Hypothetical superoxide dismutase-like protein YO; 100.0
2jlp_A222 Extracellular superoxide dismutase (Cu-Zn); glycol 100.0
1eqw_A156 Cu,Zn superoxide dismutase; greek KEY B-barrel, ox 100.0
2aqm_A154 Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10 100.0
1oal_A151 Superoxide dismutase; oxidoreductase, prokaryotic 100.0
2aqp_A164 Superoxide dismutase [CU-ZN]; electrostatic guidan 100.0
1z9n_A177 Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid 100.0
1eso_A154 SOD, Cu, Zn superoxide dismutase; oxidoreductase, 100.0
1pzs_A208 Superoxide dismutase [CU-ZN]; Cu-protein, beta cor 100.0
1ej8_A140 Lys7; beta barrel, copper chaperone for SOD, domai 100.0
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 100.0
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 100.0
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} SCOP: b.1.8.1 PDB: 3l9e_A Back     alignment and structure
Probab=100.00  E-value=6.3e-57  Score=338.56  Aligned_cols=153  Identities=71%  Similarity=1.129  Sum_probs=146.3

Q ss_pred             CceeEEEEEcCCCeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q psy962            2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRH   81 (155)
Q Consensus         2 ~~~~Ava~l~~~~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~   81 (155)
                      ||.+|||+|+| .|+|+|+|+|.+++..+.|+++|+||+||.|+|||||+|||+++|+|||+||||+++.|+.|++..||
T Consensus         1 ~~~~Ava~l~G-~v~G~v~f~q~~~~~~v~v~~~l~GL~pG~hg~HIHe~Gd~s~gc~SaGgHfnP~~~~Hg~p~~~~~h   79 (154)
T 3l9y_A            1 MPAKAVCVLRG-DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRH   79 (154)
T ss_dssp             -CEEEEEEEEE-SSEEEEEEEESSTTSCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGGCSBCCTTCCCCCCTTCSSCC
T ss_pred             CCeEEEEEEcC-CCEEEEEEEEeCCCCcEEEEEEEECCCCCCccEEEEecCcCCCCcccccccccccCCcCCCCCccccc
Confidence            57899999999 49999999999864479999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCeEE-cCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEeecC
Q psy962           82 VGDLGNIVA-TANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAKA  155 (155)
Q Consensus        82 ~GDLg~i~~-~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~~~~  155 (155)
                      +||||||++ +++|.++++|++++|+|+++++|+|||||||+.+|||++++++.|+++||+|+|||||||+++|+
T Consensus        80 ~GDLgni~~~~~~G~a~~~~~d~~~sL~g~~~iiGRsiVIHa~~Dd~g~g~~~~s~~tGnaG~RiaCgvI~~~~~  154 (154)
T 3l9y_A           80 VGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNELSKTTGNAGGRIACGVIGLAKI  154 (154)
T ss_dssp             TTEEEEEEESSTTSEEEEEEEESSCBSSSTTBCTTSEEEEESSCCCTTCSSSTTTTTTTTCCCEEEEEECEECCC
T ss_pred             ccccCCEEEeCCCCeEEEEEEcCceEecCccccCCeEEEEEcCCccCCCCCCcCcccCCCCCCcEEEEEEEEeeC
Confidence            999999999 99999999999999999999999999999999999999999999999999999999999999874
>4a7u_A Superoxide dismutase [CU-ZN]; oxidoreductase, amyotrophic lateral sclerosis, antioxidant, mutation, metal-binding, Zn superoxide dismutase; HET: ALE; 0.98A {Homo sapiens} PDB: 3ecv_A 1uxl_A* 4a7g_F* 4a7q_A* 4a7t_A* 4a7s_A* 4a7v_A* 4b3e_A 4a7g_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A ... Back     alignment and structure
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 3s0p_A 1srd_A Back     alignment and structure
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} SCOP: b.1.8.1 PDB: 3f7k_A Back     alignment and structure
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A Back     alignment and structure
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Back     alignment and structure
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Back     alignment and structure
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Back     alignment and structure
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Back     alignment and structure
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Back     alignment and structure
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Back     alignment and structure
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Back     alignment and structure
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Back     alignment and structure
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Back     alignment and structure
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Back     alignment and structure
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Back     alignment and structure
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Back     alignment and structure
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Back     alignment and structure
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Back     alignment and structure
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Back     alignment and structure
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Back     alignment and structure
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Back     alignment and structure
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 155
d2c9va1153 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD 5e-57
d1to4a_156 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bloo 6e-54
d1f1ga_153 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bake 4e-51
d1srda_154 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spin 4e-49
d1xsoa_150 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Afri 2e-48
d1do5a_154 b.1.8.1 (A:) Copper chaperone for superoxide dismu 3e-47
d1eqwa_155 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salm 4e-38
d2apsa_155 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Acti 2e-37
d1pzsa_171 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Myco 5e-37
d1oala_151 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Phot 6e-37
d1esoa_154 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Esch 1e-35
d1ej8a_140 b.1.8.1 (A:) Copper chaperone for superoxide dismu 2e-31
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (439), Expect = 5e-57
 Identities = 101/153 (66%), Positives = 120/153 (78%), Gaps = 1/153 (0%)

Query: 3   AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSA 61
           A KAVCVL  + PV+G I F Q+ ++ PVKV G I+GL EG HGFH+HEFGDNT GCTSA
Sbjct: 1   ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60

Query: 62  GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVH 121
           GPHFNPL + HG P D +RHVGDLGN+ A  + VA V IEDS+ISL+G + I+GRTLVVH
Sbjct: 61  GPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVH 120

Query: 122 ADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
              DDLGKGG+E S  TGNAG+R+ACGVIGIA+
Sbjct: 121 EKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 153
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Length = 156 Back     information, alignment and structure
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 153 Back     information, alignment and structure
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 154 Back     information, alignment and structure
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 150 Back     information, alignment and structure
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Length = 155 Back     information, alignment and structure
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Length = 155 Back     information, alignment and structure
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Back     information, alignment and structure
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Length = 151 Back     information, alignment and structure
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Length = 154 Back     information, alignment and structure
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query155
d1to4a_156 Cu,Zn superoxide dismutase, SOD {Blood fluke (Schi 100.0
d2c9va1153 Cu,Zn superoxide dismutase, SOD {Human (Homo sapie 100.0
d1srda_154 Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia 100.0
d1f1ga_153 Cu,Zn superoxide dismutase, SOD {Baker's yeast (Sa 100.0
d1xsoa_150 Cu,Zn superoxide dismutase, SOD {African clawed fr 100.0
d1do5a_154 Copper chaperone for superoxide dismutase, C-termi 100.0
d1oala_151 Cu,Zn superoxide dismutase, SOD {Photobacterium le 100.0
d2apsa_155 Cu,Zn superoxide dismutase, SOD {Actinobacillus pl 100.0
d1esoa_154 Cu,Zn superoxide dismutase, SOD {Escherichia coli 100.0
d1eqwa_155 Cu,Zn superoxide dismutase, SOD {Salmonella typhim 100.0
d1pzsa_171 Cu,Zn superoxide dismutase, SOD {Mycobacterium tub 100.0
d1ej8a_140 Copper chaperone for superoxide dismutase, C-termi 100.0
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=100.00  E-value=3.8e-54  Score=322.29  Aligned_cols=152  Identities=59%  Similarity=1.054  Sum_probs=146.3

Q ss_pred             ceeEEEEEcCC-CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q psy962            3 AIKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRH   81 (155)
Q Consensus         3 ~~~Ava~l~~~-~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~   81 (155)
                      ..+|||+|+++ .|+|+|+|+|.+++..++|+++|+||+||.|+|||||+|+|+++|.++|+||||++..|+.|.+..+|
T Consensus         3 ~~~Ava~~~g~~~v~G~v~F~Q~~~~~~v~V~~~l~GL~pG~hg~HIHe~Gd~s~~~~saGgH~nP~~~~hg~~~~~~~h   82 (156)
T d1to4a_           3 NMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRH   82 (156)
T ss_dssp             CCEEEEEEBCSSSCEEEEEEEESSTTSCEEEEEEEESCCSEEEEEEEESCCCCTTTTGGGCSBCCTTCCCCCCTTCSSCC
T ss_pred             ceEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEccCCCcceeeEEcCCCccCCcccccccccccccccccCCCcccCc
Confidence            46899999986 89999999998876679999999999999999999999999999999999999999999999988999


Q ss_pred             CCCcCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEeec
Q psy962           82 VGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAK  154 (155)
Q Consensus        82 ~GDLg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~~~  154 (155)
                      +|||||+.++++|.+++++++++|+|+++++|+|||||||+.+|||++++++.|+++|++|+|||||||++++
T Consensus        83 ~GDlgni~~~~~G~~~~~~~d~~l~l~g~~~iiGRsiVIH~~~Dd~~~~~~~~s~~~G~aG~RiACgvIg~a~  155 (156)
T d1to4a_          83 VGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIHENEDDLGRGGHELSKVTGNAGGRLACGVVGLAA  155 (156)
T ss_dssp             TTEEEEEEECTTSCEEEEEEESSCBSSGGGBCTTSEEEEESSCCCTTCSCSTTHHHHTTCCSEEEEEECEECC
T ss_pred             cCccccEEeCCCceEEEEEECceeecCCcCCcCCcEEEEECCCCccccCCcccccccCCCCceEEEEEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Back     information, alignment and structure
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Back     information, alignment and structure
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure