Psyllid ID: psy9636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVGGDH
Secondary Structure (PSIPRED)
cccccHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHccccccccccccccccccHHHcccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
maarrftgskinwSELTSrltdadrpnfntfkAKYDGYLRkvsalpeappkidwalyknkipvpglvDQFQKQYEalqipfpqdtetAKINEEEKQTMAEIKKWIEESQVRIAGYKkeiedeealppvsemtMQEYClaypecaydpekptfwphdeenqitkEDEEWWEKRQknlvggdh
Flexible Loop (DISEMBL)
maarrftgskinwseltsrltdadrpnfNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKkeiedeealppvSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRqknlvggdh
Low Complexity Region (SEG)
MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVGGDH
Disordered region (IsUnstruct)
************************RPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPF*******************IKKWIEESQVRIAGYK**************MTMQEYCLAYPECAYDPEKPTFW****************************
Disordered Region (DISOPRED)
******TGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKV***PEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEE*************RQKNL*****
Disordered Region (DISEMBL)
********SKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKR*********
Disordered Region (DISPRO)
*****FTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWxxxxxxxxxxxxxxxxxxxxxPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVGGDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q24251	178	ATP synthase subunit d, m	yes	N/A	0.939	0.955	0.479	6e-40
O75947	161	ATP synthase subunit d, m	yes	N/A	0.856	0.962	0.348	1e-24
Q9DCX2	161	ATP synthase subunit d, m	yes	N/A	0.856	0.962	0.335	2e-23
P13620	161	ATP synthase subunit d, m	yes	N/A	0.856	0.962	0.329	7e-23
P31399	161	ATP synthase subunit d, m	yes	N/A	0.856	0.962	0.322	2e-22
P0C2C8	173	ATP synthase subunit d, m	N/A	N/A	0.773	0.809	0.290	8e-06
Q9FT52	168	ATP synthase subunit d, m	yes	N/A	0.784	0.845	0.272	0.0002

>sp|Q24251|ATP5H_DROME ATP synthase subunit d, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-d PE=2 SV=2

 Score =  163 bits (412), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 112/171 (65%), Gaps = 1/171 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAARR   S INWS L  R+    + +F  FK K D Y+R V A PE PP+IDWA YK  
Sbjct: 1   MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPPQIDWANYKKL 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +PV GLVD FQKQYEAL++P+PQD  +++++ E K + +EI  + + S+ RI  Y+KEI 
Sbjct: 61  VPVAGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKASQSEIDAYKKASEQRIQNYQKEIA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
             ++L P  +MTM++Y  A+P+ A DP  KPTFWPH  E Q+  + +E  E
Sbjct: 121 HLKSLLPYDQMTMEDYRDAFPDSALDPLNKPTFWPHTPEEQVGYKSKEQLE 171

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
Drosophila melanogaster (taxid: 7227)

>sp|O75947|ATP5H_HUMAN ATP synthase subunit d, mitochondrial OS=Homo sapiens GN=ATP5H PE=1 SV=3

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 90/155 (58%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MA R+     I+W      +    +   ++ K+  +    +++ALPE PP IDWA YK  
Sbjct: 1   MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +   GLVD F+K++ AL++P P+D  TA+++ EEK+ +    +W+  S+ RI  Y+KE+E
Sbjct: 61  VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
             + L P  +MT+++   A+PE   D +K  +WPH
Sbjct: 121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPH 155

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Homo sapiens (taxid: 9606)

>sp|Q9DCX2|ATP5H_MOUSE ATP synthase subunit d, mitochondrial OS=Mus musculus GN=Atp5h PE=1 SV=3

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 88/155 (56%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MA R+     I+W      +    +   N  K+  + +  ++++L E PP IDWA Y+  
Sbjct: 1   MAGRKLALKTIDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRAN 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +  PGLVD F+K+Y AL+IP P+D  TA +++EEK+ +    +++  SQ+RI  Y+K++E
Sbjct: 61  VAKPGLVDDFEKKYNALKIPVPEDKYTALVDQEEKEDVKSCAEFVSGSQLRIQEYEKQLE 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
               + P  +MT+ +    +PE   D +K  +WPH
Sbjct: 121 KMRNIIPFDQMTIDDLNEIFPETKLDKKKYPYWPH 155

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Mus musculus (taxid: 10090)

>sp|P13620|ATP5H_BOVIN ATP synthase subunit d, mitochondrial OS=Bos taurus GN=ATP5H PE=1 SV=2

 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 88/155 (56%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MA R+     I+W      +    +   N+ K+  +    +++ LPE PP IDWA YK  
Sbjct: 1   MAGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKAN 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +   GLVD F+K++ AL++P P+D  TA+++ EEK+ +    +++ +S+ RI  Y+KE+E
Sbjct: 61  VAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELE 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
               + P  +MT+++    +PE   D +K  +WPH
Sbjct: 121 KMRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPH 155

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Bos taurus (taxid: 9913)

>sp|P31399|ATP5H_RAT ATP synthase subunit d, mitochondrial OS=Rattus norvegicus GN=Atp5h PE=1 SV=3

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 85/155 (54%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MA R+     I+W      +    +   N  K+  + +  ++++L E PP IDWA Y+  
Sbjct: 1   MAGRKLALKTIDWVSFVEIMPQNQKAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRAN 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +  PGLVD F+ +Y AL+IP P+D  TA ++ EEK+ +    +++  SQ R+  Y+K++E
Sbjct: 61  VDKPGLVDDFKNKYNALKIPVPEDKYTALVDAEEKEDVKNCAQFVTGSQARVREYEKQLE 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
             + + P  +MT+ +    +PE   D  K  +WPH
Sbjct: 121 KIKNMIPFDQMTIDDLNEVFPETKLDKRKYPYWPH 155

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Rattus norvegicus (taxid: 10116)

>sp|P0C2C8|ATP7_ASPTN ATP synthase subunit d, mitochondrial OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atp7 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 8/148 (5%)

Query: 1   MAARRFTGSKINWSELTSRLT--DADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYK 58
           MAAR     KI+W ++TS L        +   FK + D   RKV  L E P  +D+A Y+
Sbjct: 1   MAARS-AALKIDWVKVTSSLGLRGQTAASLQAFKKRNDDARRKVQILSEQPQTVDFAHYR 59

Query: 59  NKIPVPGLVDQFQKQYEALQ-IPFPQDTETAKINEEEKQTM--AEIKKWIEESQVRIAGY 115
             +    +VD+ + Q++  +   +    +   I   E Q +  AE  K   E+++R    
Sbjct: 60  QILKNQAVVDEIENQFKNFKPATYDVSRQLKAIEAFEAQAVQNAEQTKGKVEAELR--NL 117

Query: 116 KKEIEDEEALPPVSEMTMQEYCLAYPEC 143
           +K +E+ E   P  E+T+ E   A PE 
Sbjct: 118 QKTLENIETARPFDELTVDEVAAAQPEI 145

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|Q9FT52|ATP5H_ARATH ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 1   MAARRFTGSK-INWSELTSRL-TDADRPNFNTFKAKYDGYLRKV-SALPEAPPKIDWALY 57
           +A   F  S+ I+W  +   L TD  R  F+  +  +D    ++ +   + P  IDW  Y
Sbjct: 8   IADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYY 67

Query: 58  KNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKK 117
           +  I   G+VD++++ Y++++IP   D  T +   +    + E+K+  ++S       +K
Sbjct: 68  RKGIGA-GIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEK 126

Query: 118 EIED-EEALPPVSEMTMQEYCLAYPEC 143
           EI D +E    +S MT  EY   +PE 
Sbjct: 127 EIADVQEISKKLSTMTADEYFEKHPEL 153

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
110671524	181	putative ATP synthase subunit d [Diaphor	1.0	1.0	1.0	1e-102
321467262	168	hypothetical protein DAPPUDRAFT_231100 [	0.883	0.952	0.462	2e-39
195113655	178	GI10758 [Drosophila mojavensis] gi|19391	0.939	0.955	0.502	2e-39
332373728	174	unknown [Dendroctonus ponderosae]	0.883	0.919	0.490	2e-39
195054094	178	GH18181 [Drosophila grimshawi] gi|193895	0.939	0.955	0.485	6e-39
170051211	172	ATP synthase D chain [Culex quinquefasci	0.883	0.930	0.490	8e-39
195450817	178	GK13576 [Drosophila willistoni] gi|19416	0.939	0.955	0.491	9e-39
195497846	178	ATPsyn-d [Drosophila yakuba] gi|38047613	0.939	0.955	0.485	1e-38
194746695	178	GF16047 [Drosophila ananassae] gi|190628	0.939	0.955	0.485	1e-38
195399484	178	GJ14360 [Drosophila virilis] gi|19414190	0.939	0.955	0.485	1e-38

>gi|110671524|gb|ABG82013.1| putative ATP synthase subunit d [Diaphorina citri]

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK
Sbjct: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE
Sbjct: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVGGD 180
           DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVGGD
Sbjct: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVGGD 180

Query: 181 H 181
           H
Sbjct: 181 H 181

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321467262|gb|EFX78253.1| hypothetical protein DAPPUDRAFT_231100 [Daphnia pulex]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 112/160 (70%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAA+R   S INWS +  +++++ RP FN FK K D YLR+V A PE PP IDWA Y+ +
Sbjct: 1   MAAKRIAQSAINWSAMAEKVSESQRPMFNAFKLKSDQYLRRVMANPENPPAIDWAYYQTR 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           + VPGLV+ F+KQYE LQ+P+P D  TA+++ +EK+    IK+++ ES  R+   + E++
Sbjct: 61  VAVPGLVESFKKQYEGLQVPYPADKVTAQVDAQEKEMQVSIKEFVAESNRRVMDAEAELK 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQ 160
           +  ++ P S+MTM++Y  A+P+ A++   PTFWPHDE +Q
Sbjct: 121 NWASVLPFSQMTMEDYAEAFPDKAWNAANPTFWPHDEASQ 160

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113655|ref|XP_002001383.1| GI10758 [Drosophila mojavensis] gi|193917977|gb|EDW16844.1| GI10758 [Drosophila mojavensis]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 114/171 (66%), Gaps = 1/171 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAARR   S INWS L  R+    + +F  FK K D Y+R V A PE PPKIDWA YK  
Sbjct: 1   MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPENPPKIDWAYYKKL 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           IPV GLVD FQKQYEAL +P+P+DT + +++ E +++ +EI K+ +ES+ RI  Y+KEI 
Sbjct: 61  IPVSGLVDNFQKQYEALSVPYPKDTVSQQVDCEIEESKSEISKYKKESEQRIQNYQKEIA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
             ++L P  +MTM++Y  A+PE A DP  KPTFWPH  E Q+  + +E  E
Sbjct: 121 HLKSLLPYDQMTMEDYRDAFPESALDPINKPTFWPHTPEEQVGYKSKEQLE 171

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373728|gb|AEE62005.1| unknown [Dendroctonus ponderosae]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 114/161 (70%), Gaps = 1/161 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAA+R T S +NW+ ++ R+ +  R  F TFK+K +GYLR+V A PE PP I+W LYK K
Sbjct: 1   MAAKRITQSSVNWAAISERVPEHQRALFLTFKSKSEGYLRRVLAQPEKPPAINWDLYKQK 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +PV G+VD+FQK+Y AL IPFP DT + ++N +EK+  A+++K+  ES  RIA YK+++ 
Sbjct: 61  VPVAGMVDEFQKKYSALSIPFPPDTVSGQLNAQEKEIQADVEKFKTESNARIAQYKQQLA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQ 160
              +L P  EMTM+++  AYP+ A DP  +PT+WPH  E+Q
Sbjct: 121 HINSLLPYDEMTMEDFYDAYPDKALDPINRPTYWPHTPEDQ 161

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054094|ref|XP_001993961.1| GH18181 [Drosophila grimshawi] gi|193895831|gb|EDV94697.1| GH18181 [Drosophila grimshawi]

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 111/171 (64%), Gaps = 1/171 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAARR   S INWS L  R+    + +F  FK K D Y+R V A PE PPKIDWA YK  
Sbjct: 1   MAARRIAASSINWSALAERVPANQKSSFGAFKTKSDIYVRAVMANPETPPKIDWAYYKRL 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +PV GLVD FQKQY+A+ +P+P+DT T ++  E K++ +EI  + + S+ RI  Y+KEI 
Sbjct: 61  VPVAGLVDGFQKQYDAVSVPYPKDTVTPQVEAEIKESQSEIGAYKKASEQRIQNYQKEIA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
             +AL P  +MTM++Y  A+P+ A DP  KPTFWPH  E Q+  + +E  E
Sbjct: 121 HLKALLPYDQMTMEDYRDAFPDSALDPLNKPTFWPHTPEEQVGYKSKEQLE 171

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051211|ref|XP_001861662.1| ATP synthase D chain [Culex quinquefasciatus] gi|167872539|gb|EDS35922.1| ATP synthase D chain [Culex quinquefasciatus]

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 1/161 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MA+RR   S +NW+ L  R+  + +PN   FK+  D YLR V   PE PPKIDWA Y+  
Sbjct: 1   MASRRIAQSSVNWAALAERVPQSQKPNLAAFKSMSDKYLRSVIVNPETPPKIDWAHYQKS 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +P+ G+VD+FQK YEALQIP+P DT TA++  +EKQ   EI K+ ++S+ RIA Y  +I 
Sbjct: 61  VPIAGMVDKFQKAYEALQIPYPADTVTAQVEAQEKQVKEEIAKFCKDSESRIADYASQIA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQ 160
             +AL P  +MTM++Y  A+P+ A DP  +PTFWPH  E Q
Sbjct: 121 ALKALLPYDQMTMEDYRDAFPDQALDPINRPTFWPHSPEEQ 161

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195450817|ref|XP_002072646.1| GK13576 [Drosophila willistoni] gi|194168731|gb|EDW83632.1| GK13576 [Drosophila willistoni]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 111/171 (64%), Gaps = 1/171 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAARR   S INWS L  R+    R +F  FK K D Y+R V A PE PPKIDWA YK  
Sbjct: 1   MAARRVAQSSINWSSLAERVPANQRSSFGAFKTKSDIYVRAVLANPETPPKIDWANYKRL 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           IPV GLVD FQKQY+AL +P+P+DT + +++ E K + +EI  + + S+ RI  Y+KEI 
Sbjct: 61  IPVAGLVDSFQKQYDALTVPYPKDTVSPQVDAEIKDSQSEIASYKKASEQRIQNYQKEIA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
             ++L P  +MTM++Y  A+P+ A DP  KPTFWPH  E Q+  + +E  E
Sbjct: 121 HLKSLLPYEQMTMEDYRDAFPDSALDPINKPTFWPHTPEEQVGYKSKEQLE 171

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195497846|ref|XP_002096273.1| ATPsyn-d [Drosophila yakuba] gi|38047613|gb|AAR09709.1| similar to Drosophila melanogaster ATPsyn-d, partial [Drosophila yakuba] gi|194182374|gb|EDW95985.1| ATPsyn-d [Drosophila yakuba]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 112/171 (65%), Gaps = 1/171 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAARR   S INWS L  R+    + +F  FK K D Y+R V A PE PP+IDWA YK  
Sbjct: 1   MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPPQIDWANYKKL 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +PV GLVD FQKQYEAL++P+PQD  +++++ E K + +EI  + + S+ RI  Y+KEI 
Sbjct: 61  VPVAGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKSSQSEIDAYKKASEQRIQNYQKEIA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
             ++L P  +MTM++Y  A+PE A DP  KPTFWPH  E Q+  + +E  E
Sbjct: 121 HLKSLLPYDQMTMEDYRDAFPESALDPLNKPTFWPHTPEEQVGYKSKEQLE 171

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746695|ref|XP_001955812.1| GF16047 [Drosophila ananassae] gi|190628849|gb|EDV44373.1| GF16047 [Drosophila ananassae]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 1/171 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAARR   S INWS L  R+    + +F  FK K D Y+R V A PE PP+IDWA YK  
Sbjct: 1   MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPPQIDWANYKKL 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +PV GLVD FQKQYEAL++P+P+DT T +++ + K++ +EI  + + S+ RI  Y+KEI 
Sbjct: 61  VPVQGLVDSFQKQYEALKVPYPKDTYTPQVDAQVKESQSEIDSYKKASEQRIQSYQKEIA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
             ++L P  +MTM++Y  A+PE A DP  KPTFWPH  E Q+  + +E  E
Sbjct: 121 HLKSLLPYEQMTMEDYRDAFPESALDPLNKPTFWPHTPEEQVGYKSKEQLE 171

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399484|ref|XP_002058349.1| GJ14360 [Drosophila virilis] gi|194141909|gb|EDW58317.1| GJ14360 [Drosophila virilis]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 111/171 (64%), Gaps = 1/171 (0%)

Query: 1   MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
           MAARR T S INWS L  R+  + + +F  FK K D Y+R V A PE+PPKIDWA YK  
Sbjct: 1   MAARRITQSSINWSALAERVPASQKSSFGAFKTKSDIYVRAVLANPESPPKIDWAYYKRL 60

Query: 61  IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           IPV GLVD FQKQY+ L +P+P+D  +  ++ E +++  EI  + + S+ RI  Y+KEI 
Sbjct: 61  IPVAGLVDSFQKQYDGLSVPYPKDNVSKLVDAEIEESQCEISNYKKASEQRIQNYQKEIA 120

Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
             +AL P  +MTM++Y  A+PE A DP  KPTFWPH  E Q+  + +E  E
Sbjct: 121 HLKALLPYDQMTMEDYRDAFPESALDPINKPTFWPHTPEEQVGYKSKEQLE 171

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
FB|FBgn0016120	178	ATPsyn-d "ATP synthase, subuni	0.939	0.955	0.479	2.3e-39
UNIPROTKB|E1C658	161	ATP5H "Uncharacterized protein	0.856	0.962	0.387	1.6e-29
UNIPROTKB|O75947	161	ATP5H "ATP synthase subunit d,	0.878	0.987	0.35	8.4e-26
ZFIN|ZDB-GENE-040426-1658	161	atp5h "ATP synthase, H+ transp	0.856	0.962	0.341	7.6e-25
MGI|MGI:1918929	161	Atp5h "ATP synthase, H+ transp	0.878	0.987	0.337	1.2e-24
UNIPROTKB|P13620	161	ATP5H "ATP synthase subunit d,	0.856	0.962	0.329	4.2e-24
RGD|620083	161	Atp5h "ATP synthase, H+ transp	0.878	0.987	0.325	2.3e-23
UNIPROTKB|P31399	161	Atp5h "ATP synthase subunit d,	0.878	0.987	0.325	2.3e-23
UNIPROTKB|E2RHH8	161	LOC478252 "Uncharacterized pro	0.856	0.962	0.322	3.8e-23
UNIPROTKB|E2QY34	161	E2QY34 "Uncharacterized protei	0.856	0.962	0.309	7.8e-23

FB|FBgn0016120 ATPsyn-d "ATP synthase, subunit d" [Drosophila melanogaster (taxid:7227)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 82/171 (47%), Positives = 112/171 (65%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MAARR   S INWS L  R+    + +F  FK K D Y+R V A PE PP+IDWA YK  
Sbjct:     1 MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPPQIDWANYKKL 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +PV GLVD FQKQYEAL++P+PQD  +++++ E K + +EI  + + S+ RI  Y+KEI 
Sbjct:    61 VPVAGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKASQSEIDAYKKASEQRIQNYQKEIA 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
               ++L P  +MTM++Y  A+P+ A DP  KPTFWPH  E Q+  + +E  E
Sbjct:   121 HLKSLLPYDQMTMEDYRDAFPDSALDPLNKPTFWPHTPEEQVGYKSKEQLE 171

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=ISS

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|E1C658 ATP5H "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/155 (38%), Positives = 95/155 (61%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MAARR     I+W+    R+    R  FN  K + D    +++ALPE PP IDW  YK  
Sbjct:     1 MAARRTAVKAIDWAAFAERVPANQRAMFNALKTRSDALSARLAALPEKPPAIDWTYYKTA 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +   G+VD+FQK++ AL++P P DT+TAKI+ +E++    I ++++ S+ RIA Y+++++
Sbjct:    61 VAKAGMVDEFQKKFSALKVPEPVDTQTAKIDAQEQEAAKGIVEYVKASKARIAEYEQQLQ 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
                ++ P  +MT ++   A+PE   D EK  FWPH
Sbjct:   121 KLRSMIPFEQMTFEDLHEAFPETRLDREKYPFWPH 155

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|O75947 ATP5H "ATP synthase subunit d, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 56/160 (35%), Positives = 92/160 (57%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MA R+     I+W      +    +   ++ K+  +    +++ALPE PP IDWA YK  
Sbjct:     1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +   GLVD F+K++ AL++P P+D  TA+++ EEK+ +    +W+  S+ RI  Y+KE+E
Sbjct:    61 VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDE-EN 159
               + L P  +MT+++   A+PE   D +K  +WPH   EN
Sbjct:   121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIEN 160

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA;TAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

ZFIN|ZDB-GENE-040426-1658 atp5h "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d" [Danio rerio (taxid:7955)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/155 (34%), Positives = 89/155 (57%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MA RR     I+W     R+    R  FN+ K + D    K+++LPE P  I+W+ Y+  
Sbjct:     1 MAGRRAAVKAIDWLAFAERVPPNQRAMFNSLKTRSDAISAKLASLPEKPSTINWSHYRAV 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +   G+VD+F+K++  L +P P DT+TAKI+ +E++       ++E S+ RIA Y+KE+E
Sbjct:    61 VAKAGMVDEFEKKFAGLTVPEPVDTQTAKIDAQEQEANKSAAAYLEASKARIAEYEKELE 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
                 + P  +MT+++    +PE   D +K  +WP+
Sbjct:   121 KFRNMIPFDQMTIEDLNNTFPETKLDKQKYPYWPY 155

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

MGI|MGI:1918929 Atp5h "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d" [Mus musculus (taxid:10090)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 54/160 (33%), Positives = 90/160 (56%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MA R+     I+W      +    +   N  K+  + +  ++++L E PP IDWA Y+  
Sbjct:     1 MAGRKLALKTIDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRAN 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +  PGLVD F+K+Y AL+IP P+D  TA +++EEK+ +    +++  SQ+RI  Y+K++E
Sbjct:    61 VAKPGLVDDFEKKYNALKIPVPEDKYTALVDQEEKEDVKSCAEFVSGSQLRIQEYEKQLE 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDE-EN 159
                 + P  +MT+ +    +PE   D +K  +WPH   EN
Sbjct:   121 KMRNIIPFDQMTIDDLNEIFPETKLDKKKYPYWPHQPIEN 160

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

UNIPROTKB|P13620 ATP5H "ATP synthase subunit d, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 51/155 (32%), Positives = 88/155 (56%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MA R+     I+W      +    +   N+ K+  +    +++ LPE PP IDWA YK  
Sbjct:     1 MAGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKAN 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +   GLVD F+K++ AL++P P+D  TA+++ EEK+ +    +++ +S+ RI  Y+KE+E
Sbjct:    61 VAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELE 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
                 + P  +MT+++    +PE   D +K  +WPH
Sbjct:   121 KMRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPH 155

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

RGD|620083 Atp5h "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 52/160 (32%), Positives = 87/160 (54%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MA R+     I+W      +    +   N  K+  + +  ++++L E PP IDWA Y+  
Sbjct:     1 MAGRKLALKTIDWVSFVEIMPQNQKAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRAN 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +  PGLVD F+ +Y AL+IP P+D  TA ++ EEK+ +    +++  SQ R+  Y+K++E
Sbjct:    61 VDKPGLVDDFKNKYNALKIPVPEDKYTALVDAEEKEDVKNCAQFVTGSQARVREYEKQLE 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDE-EN 159
               + + P  +MT+ +    +PE   D  K  +WPH   EN
Sbjct:   121 KIKNMIPFDQMTIDDLNEVFPETKLDKRKYPYWPHQPIEN 160

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=ISO;TAS

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA;TAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0016887 "ATPase activity" evidence=ISO

UNIPROTKB|P31399 Atp5h "ATP synthase subunit d, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 52/160 (32%), Positives = 87/160 (54%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MA R+     I+W      +    +   N  K+  + +  ++++L E PP IDWA Y+  
Sbjct:     1 MAGRKLALKTIDWVSFVEIMPQNQKAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRAN 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +  PGLVD F+ +Y AL+IP P+D  TA ++ EEK+ +    +++  SQ R+  Y+K++E
Sbjct:    61 VDKPGLVDDFKNKYNALKIPVPEDKYTALVDAEEKEDVKNCAQFVTGSQARVREYEKQLE 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDE-EN 159
               + + P  +MT+ +    +PE   D  K  +WPH   EN
Sbjct:   121 KIKNMIPFDQMTIDDLNEVFPETKLDKRKYPYWPHQPIEN 160

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|E2RHH8 LOC478252 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 50/155 (32%), Positives = 87/155 (56%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             MA R+     I+W      +    +   N+ K+  +    +++ LPE PP IDWA YK  
Sbjct:     1 MAGRKLALKTIDWVAFGEIIPRNQKAIANSLKSWNEMLTSRLATLPEKPPAIDWAYYKAN 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +   GLVD F+K++ AL++P P+D  T +++ EEK+ +    +++  S+ RI  Y+KE+E
Sbjct:    61 VAKAGLVDDFEKKFNALKVPVPEDKYTVQVDAEEKEDVKSCAEFLSLSKARIEEYEKELE 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
               + + P  +MT+++    +PE   D +K  +WPH
Sbjct:   121 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPH 155

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

UNIPROTKB|E2QY34 E2QY34 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 48/155 (30%), Positives = 87/155 (56%)

Query:     1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
             +  RR      +W +    +    +   N+ K+  +  + +++ LPE PP IDWA YK  
Sbjct:     1 LPGRRSWAELCDWVDFGEIIPQNQKAIANSLKSWNEMLISRLATLPEKPPAIDWAYYKAN 60

Query:    61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
             +   GLVD F+K++ AL++P P+D  T +++ EEK+ +    +++  S+ RI  Y+KE+E
Sbjct:    61 VAKAGLVDDFEKKFNALKVPVPEDKYTVQVDAEEKEDVKSCAEFLSLSKARIEEYEKELE 120

Query:   121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
               + + P  +MT+++    +PE   D +K  +WPH
Sbjct:   121 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPH 155

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P31399	ATP5H_RAT	No assigned EC number	0.3225	0.8563	0.9627	yes	N/A
Q9DCX2	ATP5H_MOUSE	No assigned EC number	0.3354	0.8563	0.9627	yes	N/A
Q24251	ATP5H_DROME	No assigned EC number	0.4795	0.9392	0.9550	yes	N/A
O75947	ATP5H_HUMAN	No assigned EC number	0.3483	0.8563	0.9627	yes	N/A
P13620	ATP5H_BOVIN	No assigned EC number	0.3290	0.8563	0.9627	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	181
pfam05873	160	pfam05873, Mt_ATP-synt_D, ATP synthase D chain, mi	3e-46

>gnl|CDD|114591 pfam05873, Mt_ATP-synt_D, ATP synthase D chain, mitochondrial (ATP5H)

 Score =  148 bits (376), Expect = 3e-46
 Identities = 74/160 (46%), Positives = 105/160 (65%)

Query: 2   AARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKI 61
           AARR   S INWS L  R+    +  FN FK+K + Y  +V+ LPE PP IDWA YK  +
Sbjct: 1   AARRVALSSINWSALAERVPPNQKAEFNAFKSKSETYQSRVAQLPEKPPAIDWAYYKKNV 60

Query: 62  PVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIED 121
           P  GLVD F+K+YEAL++P+P+D  TA+++ EEK+ +  I ++  +S  RI  Y+KE+E 
Sbjct: 61  PKAGLVDSFEKKYEALKVPYPEDKYTAQVDAEEKEDVKRIAEYKTKSADRIQEYEKELEK 120

Query: 122 EEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQI 161
            + + P  +MTM+++  A+PE A D  KPTFWPH  E Q+
Sbjct: 121 WKNMIPYDQMTMEDFNEAFPETALDLNKPTFWPHTPEEQL 160

This family consists of several ATP synthase D chain, mitochondrial (ATP5H) proteins. Subunit d has no extensive hydrophobic sequences, and is not apparently related to any subunit described in the simpler ATP synthases in bacteria and chloroplasts. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PF05873	161	Mt_ATP-synt_D: ATP synthase D chain, mitochondrial	100.0
KOG3366|consensus	172		100.0

>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=4.2e-64  Score=404.55  Aligned_cols=160  Identities=46%  Similarity=0.872  Sum_probs=94.8

Q ss_pred             cccccccccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCC-CchhHHHHHHHhhccccc
Q psy9636           2 AARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIP-VPGLVDQFQKQYEALQIP   80 (181)
Q Consensus         2 Aakr~a~~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~-~~~lVD~fEK~y~s~kvp   80 (181)
                      ||||+|+++|||++|+++||++|+++|++||+|||+++++|.+||++||+|||+|||++|+ |++|||+|||+|++|+||
T Consensus         1 Aakr~a~~aidWa~l~~~vp~~~~~~~~afk~r~d~~~~~v~~~pe~pp~IDwa~Yk~~l~~~~~lVD~feK~y~s~kip   80 (161)
T PF05873_consen    1 AAKRIAASAIDWAKLAERVPPEQKAQFQAFKKRSDEYKRRVSKLPEQPPKIDWAHYKSVLKENPGLVDEFEKQYESFKIP   80 (161)
T ss_dssp             -----------HHHHHTTS-GGGHHHHHHHHHHHHHHHHHHHHS-SS-----HHHHHHC-S-STTHHHHHHHHHCC----
T ss_pred             CcHHHHHHHccHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHhhhhHHHHHHHHHHHhccCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             CCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q psy9636          81 FPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQ  160 (181)
Q Consensus        81 ~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~Pe~~~d~~~pt~wpH~p~~~  160 (181)
                      ||+|++++.|+++++++++++++++++|++||++|+++|++|++++||++||||||+++||++++|.|+||||||+|++|
T Consensus        81 ~p~d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~P~e~mT~dd~~~a~Pe~~~d~~k~~~wPh~p~~~  160 (161)
T PF05873_consen   81 YPVDKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESARPFEQMTVDDYAAAFPEIALDINKPTFWPHTPEEQ  160 (161)
T ss_dssp             ----TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-------------------------------------
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhCCHHHHHHhCcccccccCCCCCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q psy9636         161 I  161 (181)
Q Consensus       161 ~  161 (181)
                      +
T Consensus       161 ~  161 (161)
T PF05873_consen  161 L  161 (161)
T ss_dssp             -
T ss_pred             C
Confidence            5

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.

>KOG3366|consensus

Probab=100.00  E-value=9.7e-55  Score=350.20  Aligned_cols=162  Identities=35%  Similarity=0.663  Sum_probs=157.1

Q ss_pred             Ccc-cccccccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhccc-
Q psy9636           1 MAA-RRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQ-   78 (181)
Q Consensus         1 MAa-kr~a~~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~k-   78 (181)
                      ||+ +++++++|||++|+++||++|+++|.+||++|+++.++|..||+++|+|||+|||++|+|.||||.||++|+||| 
T Consensus         1 ma~~k~aa~~~IdWa~lae~v~~~~~~~~s~fk~~~~~~~~~l~~lpe~~p~IDwa~Yrk~va~a~~VD~~ek~y~slk~   80 (172)
T KOG3366|consen    1 MAGVKSAASSSIDWAKLAERVPPNQAAEFSSFKSRNDEAVSRLLTLPEQPPTIDWAYYRKVVANAGLVDKYEKKYDSLKP   80 (172)
T ss_pred             ChhhHHHHhccccHHHHHHHcCHHHHHHHHHHHHhhHHHHHHHHhcccCCCccCHHHHHHHhhhhHHHHHHHHHHHhccc
Confidence            654 667777799999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCC-CCCCCC-CCCCCCCCC
Q psy9636          79 IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYP-ECAYDP-EKPTFWPHD  156 (181)
Q Consensus        79 vp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~P-e~~~d~-~~pt~wpH~  156 (181)
                      ||+|.|+|+++|+++++.++++|++++..|.+||++|+++|++|+++|||+|||||||+++|| +.+.|+ ++|+||||+
T Consensus        81 v~~~~~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~v~~~~P~demT~ed~~ea~P~~~k~d~~~k~g~W~~p  160 (172)
T KOG3366|consen   81 VPVDEDKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEKVKSARPFDEMTMEDLNEAFPIEKKVDDMVKPGKWPHP  160 (172)
T ss_pred             cCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHhCchhhcccccccCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999 888999 999999999


Q ss_pred             cccccC
Q psy9636         157 EENQIT  162 (181)
Q Consensus       157 p~~~~~  162 (181)
                      |++|..
T Consensus       161 ~~e~~f  166 (172)
T KOG3366|consen  161 PYEQRF  166 (172)
T ss_pred             chhhcc
Confidence            999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
2cly_B	160	Subcomplex Of The Stator Of Bovine Mitochondrial At		3e-23
2wss_U	118	The Structure Of The Membrane Extrinsic Region Of B		2e-16
4b2q_U	120	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		6e-16

>pdb|2CLY|B Chain B, Subcomplex Of The Stator Of Bovine Mitochondrial Atp Synthase Length = 160

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 87/154 (56%)
Query: 2   AARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKI 61
           A R+     I+W      +    +   N+ K+  +    +++ LPE PP IDWA YK  +
Sbjct: 1   AGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANV 60
Query: 62  PVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIED 121
              GLVD F+K++ AL++P P+D  TA+++ EEK+ +    +++ +S+ RI  Y+KE+E 
Sbjct: 61  AKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEK 120
Query: 122 EEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
              + P  +MT+++    +PE   D +K  +WPH
Sbjct: 121 MRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPH 154

>pdb|2WSS|U Chain U, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 118

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 68/118 (57%)
Query: 2   AARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKI 61
           A R+     I+W      +    +   N+ K+  +    +++ LPE PP IDWA YK  +
Sbjct: 1   AGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANV 60
Query: 62  PVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEI 119
              GLVD F+K++ AL++P P+D  TA+++ EEK+ +    +++ +S+ RI  Y+KE+
Sbjct: 61  AKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKEL 118

>pdb|4B2Q|U Chain U, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 120

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 66/110 (60%)
Query: 11  INWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQF 70
           I+W      +    +   N+ K+  +    +++ LPE PP IDWA YK  +   GLVD F
Sbjct: 7   IDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDF 66
Query: 71  QKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           +K++ AL++P P+D  TA+++ EEK+ +    +++ +S+ RI  Y+KE+E
Sbjct: 67  EKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELE 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
2cly_B	160	ATP synthase D chain, mitochondrial; mitochondrion	1e-54
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U* Length = 160

 Score =  169 bits (429), Expect = 1e-54
 Identities = 50/160 (31%), Positives = 88/160 (55%)

Query: 2   AARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKI 61
           A R+     I+W      +    +   N+ K+  +    +++ LPE PP IDWA YK  +
Sbjct: 1   AGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANV 60

Query: 62  PVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIED 121
              GLVD F+K++ AL++P P+D  TA+++ EEK+ +    +++ +S+ RI  Y+KE+E 
Sbjct: 61  AKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEK 120

Query: 122 EEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQI 161
              + P  +MT+++    +PE   D +K  +WPH     +
Sbjct: 121 MRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIETL 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 27/109 (24%)

Query: 68  DQFQKQYEALQIPFPQDTE----------TAKINEEEKQTMAE------IKKWIEESQVR 111
            +++K ++ L + FP                 I  +    + +      ++K  +ES + 
Sbjct: 369 AEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 112 IAG----YKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHD 156
           I       K ++E+E AL       +  Y +      +D +       D
Sbjct: 428 IPSIYLELKVKLENEYAL---HRSIVDHYNIP---KTFDSDDLIPPYLD 470

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
2cly_B	160	ATP synthase D chain, mitochondrial; mitochondrion	100.0

>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*

Probab=100.00  E-value=1.4e-63  Score=400.09  Aligned_cols=159  Identities=31%  Similarity=0.679  Sum_probs=119.6

Q ss_pred             cccccccccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhcccccC
Q psy9636           2 AARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPF   81 (181)
Q Consensus         2 Aakr~a~~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~   81 (181)
                      ||||+|+++|||++|+++||++|+++|++||++||+++++|.+||++||+|||+|||++|+|++|||+|||+|++|+|||
T Consensus         1 a~rr~a~~~idW~~l~~~v~~~~~a~~~afK~~~d~~~~~v~~lpe~pp~IDwa~Yk~~l~~~~lVD~fek~y~s~kvp~   80 (160)
T 2cly_B            1 AGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPI   80 (160)
T ss_dssp             ---CCCCCCCCHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHSCSSCCCCCHHHHHHTCSSTTHHHHHHHHHTTCCCCC
T ss_pred             CchhHHHhhccHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHhCCchHHHHHHHHHHhccCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCCCCCCCC-CCCCCCCCCcccc
Q psy9636          82 PQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQ  160 (181)
Q Consensus        82 p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~Pe~~~d~-~~pt~wpH~p~~~  160 (181)
                      |+|+++++|+++|++++++|++|+++|++||++|++||++|++++||+|||||||+++||++++|+ ++| ||||+|++|
T Consensus        81 ~~d~~~~~i~a~e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~~~P~~~mT~dd~~~a~Pe~~~D~i~~p-~Wph~p~~~  159 (160)
T 2cly_B           81 PEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPFDQMTIEDLNEVFPETKLDKKKYP-YWPHRPIET  159 (160)
T ss_dssp             CCCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhCCHHHHHHhCchhccCcccCC-CCCCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999 899 999999988


Q ss_pred             c
Q psy9636         161 I  161 (181)
Q Consensus       161 ~  161 (181)
                      +
T Consensus       160 ~  160 (160)
T 2cly_B          160 L  160 (160)
T ss_dssp             -
T ss_pred             C
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d2clyb1	120	f.53.1.1 (B:4-123) ATP synthase subunit d, mitocho	2e-40

>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]} Length = 120

class: Membrane and cell surface proteins and peptides
fold: ATP synthase D chain-like
superfamily: ATP synthase D chain-like
family: ATP synthase D chain-like
domain: ATP synthase subunit d, mitochondrial
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  131 bits (330), Expect = 2e-40
 Identities = 38/116 (32%), Positives = 67/116 (57%)

Query: 5   RFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVP 64
           +     I+W      +    +   N+ K+  +    +++ LPE PP IDWA YK  +   
Sbjct: 1   KLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKA 60

Query: 65  GLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
           GLVD F+K++ AL++P P+D  TA+++ EEK+ +    +++ +S+ RI  Y+KE+E
Sbjct: 61  GLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELE 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d2clyb1	120	ATP synthase subunit d, mitochondrial {Cow (Bos ta	100.0

>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: ATP synthase D chain-like
superfamily: ATP synthase D chain-like
family: ATP synthase D chain-like
domain: ATP synthase subunit d, mitochondrial
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-45  Score=281.40  Aligned_cols=120  Identities=32%  Similarity=0.660  Sum_probs=118.1

Q ss_pred             ccccccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhcccccCCCC
Q psy9636           5 RFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQD   84 (181)
Q Consensus         5 r~a~~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~p~d   84 (181)
                      |+|+++|||++|+++||++|+++|++||+|||+++++|.+||++||+|||+|||++|+|+||||+|||+|++|+||||+|
T Consensus         1 r~A~~~idWa~~~~rvp~~q~a~~~afK~~~d~~~~~v~~lpe~pp~IDwa~Yk~~v~~~~~VD~fek~y~alkvp~p~d   80 (120)
T d2clyb1           1 KLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPED   80 (120)
T ss_dssp             CCCCCCCCHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHSCSSCCCCCHHHHHHTCSSTTHHHHHHHHHTTCCCCCCCC
T ss_pred             CchHHHccHHHHHHHcCHhHHHHHHHHHHhhHHHHHHHHhCcCCCCCcCHHHHHHhcccHHHHHHHHHHHhcccCCCChh
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636          85 TETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEA  124 (181)
Q Consensus        85 ~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~  124 (181)
                      ++++.|+++|++++++|++|+++|++||++|+++|++|+|
T Consensus        81 ~~t~~ida~e~e~~~~~~~~~~~s~~rI~~lekeLe~iks  120 (120)
T d2clyb1          81 KYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN  120 (120)
T ss_dssp             CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999986