Psyllid ID: psy9662

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
MAEWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQKPV
cccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccHHHHHHHcEEEccccccccccccccccccccccc
cccccccccccHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHcHHHHHHcccEEccccccccHHHHHcccccccccc
maeweqqpnfpvgrihrhlknrttshgrvgATAAVYSAAILEYLTAEVLELAGnaskdlkvkritpRHLQLAIRGDEELDSLIKATIagggviphihksligkkgtqkpv
maeweqqpnfpvgrihrhlknrttshgrvgATAAVYSAAILEYLTAEVLELAGnaskdlkvkritPRHLQLAIRGDEELDSLIKATIagggviphihksligkkgtqkpv
MAEWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQKPV
*****************HL***TTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI*********
**EWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHK************
********NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSL**********
*******PNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQKPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query110 2.2.26 [Sep-21-2011]
P08991125 Histone H2A.V (Fragment) yes N/A 0.909 0.8 0.98 6e-51
Q6YNC8128 Histone H2A.Z OS=Ovis ari N/A N/A 0.927 0.796 0.960 1e-50
P0C0S7128 Histone H2A.Z OS=Rattus n yes N/A 0.927 0.796 0.960 1e-50
Q5RC42128 Histone H2A.Z OS=Pongo ab yes N/A 0.927 0.796 0.960 1e-50
P22647128 Histone H2A.Z OS=Oncorhyn N/A N/A 0.927 0.796 0.960 1e-50
P0C0S6128 Histone H2A.Z OS=Mus musc yes N/A 0.927 0.796 0.960 1e-50
P0C0S5128 Histone H2A.Z OS=Homo sap yes N/A 0.927 0.796 0.960 1e-50
P0C0S4128 Histone H2A.Z OS=Bos taur yes N/A 0.927 0.796 0.960 1e-50
Q5ZMD6128 Histone H2A.Z OS=Gallus g yes N/A 0.927 0.796 0.960 2e-50
Q5BJ65128 Histone H2A.V OS=Xenopus yes N/A 0.909 0.781 0.97 5e-50
>sp|P08991|H2AV_STRPU Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1 Back     alignment and function desciption
 Score =  199 bits (505), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 98/100 (98%), Positives = 99/100 (99%)

Query: 9   NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 68
            FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 24  QFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 83

Query: 69  LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQK 108
           LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKG+QK
Sbjct: 84  LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQK 123
Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.
Strongylocentrotus purpuratus (taxid: 7668)
>sp|Q6YNC8|H2AZ_SHEEP Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3 Back     alignment and function description
>sp|P0C0S7|H2AZ_RAT Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2 Back     alignment and function description
>sp|Q5RC42|H2AZ_PONAB Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3 Back     alignment and function description
>sp|P22647|H2AZ_ONCMY Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4 Back     alignment and function description
>sp|P0C0S6|H2AZ_MOUSE Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2 Back     alignment and function description
>sp|P0C0S5|H2AZ_HUMAN Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2 Back     alignment and function description
>sp|P0C0S4|H2AZ_BOVIN Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2 Back     alignment and function description
>sp|Q5ZMD6|H2AZ_CHICK Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3 Back     alignment and function description
>sp|Q5BJ65|H2AV_XENTR Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query110
333980944128 histone H2AV [Scylla paramamosain] 0.927 0.796 0.980 1e-50
380018341172 PREDICTED: histone H2A.V-like [Apis flor 0.918 0.587 0.980 1e-50
307206451135 Histone H2A.V [Harpegnathos saltator] 0.918 0.748 0.980 3e-50
328782338128 PREDICTED: histone H2A.V [Apis mellifera 0.918 0.789 0.980 4e-50
307178968127 Histone H2A.V [Camponotus floridanus] 0.918 0.795 0.980 5e-50
387598225114 histone h2a, partial [Ostrea edulis] 0.909 0.877 0.99 2e-49
242247223128 Histone H2AV (H2A.F/Z)-like [Acyrthosiph 0.918 0.789 0.960 2e-49
211908628128 histone H2A isoform 2 [Haliotis discus d 0.909 0.781 0.98 2e-49
184186115128 histone H2 A.F/Z [Strongylocentrotus pur 0.909 0.781 0.98 2e-49
260830776128 hypothetical protein BRAFLDRAFT_72473 [B 0.909 0.781 0.98 2e-49
>gi|333980944|gb|ACY66386.2| histone H2AV [Scylla paramamosain] Back     alignment and taxonomy information
 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/102 (98%), Positives = 101/102 (99%)

Query: 9   NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 68
            FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 27  QFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 86

Query: 69  LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQKPV 110
           LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKG+QKPV
Sbjct: 87  LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQKPV 128

Source: Scylla paramamosain

Species: Scylla paramamosain

Genus: Scylla

Family: Portunidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380018341|ref|XP_003693090.1| PREDICTED: histone H2A.V-like [Apis florea] Back     alignment and taxonomy information
>gi|307206451|gb|EFN84489.1| Histone H2A.V [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328782338|ref|XP_624167.2| PREDICTED: histone H2A.V [Apis mellifera] gi|340729962|ref|XP_003403261.1| PREDICTED: histone H2A.V-like [Bombus terrestris] gi|345494243|ref|XP_001605065.2| PREDICTED: histone H2A.V-like [Nasonia vitripennis] gi|350396372|ref|XP_003484532.1| PREDICTED: histone H2A.V-like [Bombus impatiens] gi|383851127|ref|XP_003701091.1| PREDICTED: histone H2A.V-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307178968|gb|EFN67484.1| Histone H2A.V [Camponotus floridanus] Back     alignment and taxonomy information
>gi|387598225|gb|AFJ91768.1| histone h2a, partial [Ostrea edulis] Back     alignment and taxonomy information
>gi|242247223|ref|NP_001156187.1| Histone H2AV (H2A.F/Z)-like [Acyrthosiphon pisum] gi|239788379|dbj|BAH70875.1| ACYPI005340 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|211908628|gb|ACJ12611.1| histone H2A isoform 2 [Haliotis discus discus] Back     alignment and taxonomy information
>gi|184186115|ref|NP_001116980.1| histone H2 A.F/Z [Strongylocentrotus purpuratus] gi|291239831|ref|XP_002739823.1| PREDICTED: H2A histone family, member Z-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|260830776|ref|XP_002610336.1| hypothetical protein BRAFLDRAFT_72473 [Branchiostoma floridae] gi|229295701|gb|EEN66346.1| hypothetical protein BRAFLDRAFT_72473 [Branchiostoma floridae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query110
UNIPROTKB|F2Z4M5127 H2AFZ "Histone H2A" [Gallus ga 0.918 0.795 0.970 1.1e-46
UNIPROTKB|Q5ZMD6128 H2AFZ "Histone H2A.Z" [Gallus 0.918 0.789 0.970 1.1e-46
UNIPROTKB|F1MT45106 H2AFZ "Histone H2A" [Bos tauru 0.918 0.952 0.970 1.1e-46
UNIPROTKB|P0C0S4128 H2AFZ "Histone H2A.Z" [Bos tau 0.918 0.789 0.970 1.1e-46
UNIPROTKB|E2R678128 H2AFZ "Uncharacterized protein 0.918 0.789 0.970 1.1e-46
UNIPROTKB|F6X834128 H2AFZ "Histone H2A" [Canis lup 0.918 0.789 0.970 1.1e-46
UNIPROTKB|P0C0S5128 H2AFZ "Histone H2A.Z" [Homo sa 0.918 0.789 0.970 1.1e-46
MGI|MGI:1888388128 H2afz "H2A histone family, mem 0.918 0.789 0.970 1.1e-46
RGD|621464128 H2afz "H2A histone family, mem 0.918 0.789 0.970 1.1e-46
ZFIN|ZDB-GENE-050506-24149 h2afvb "H2A histone family, me 0.918 0.677 0.970 1.4e-46
UNIPROTKB|F2Z4M5 H2AFZ "Histone H2A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query:    10 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
             FPVGRIHRHLK+RTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct:    27 FPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 86

Query:    70 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQKPV 110
             QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKG QK V
Sbjct:    87 QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV 127
GO:0006334 "nucleosome assembly" evidence=IEA
GO:0046982 "protein heterodimerization activity" evidence=IEA
GO:0000786 "nucleosome" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
UNIPROTKB|Q5ZMD6 H2AFZ "Histone H2A.Z" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MT45 H2AFZ "Histone H2A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0S4 H2AFZ "Histone H2A.Z" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R678 H2AFZ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X834 H2AFZ "Histone H2A" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0S5 H2AFZ "Histone H2A.Z" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1888388 H2afz "H2A histone family, member Z" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621464 H2afz "H2A histone family, member Z" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050506-24 h2afvb "H2A histone family, member Vb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4PHE4H2AZ_USTMANo assigned EC number0.81720.84540.6888N/AN/A
Q5RC42H2AZ_PONABNo assigned EC number0.96070.92720.7968yesN/A
A5DXC6H2AZ_LODELNo assigned EC number0.73680.86360.7142N/AN/A
Q8H7Y8H2AV1_ORYSJNo assigned EC number0.90520.86360.6884yesN/A
Q6DER6H2AZL_XENTRNo assigned EC number0.92150.92720.7968noN/A
Q873G4H2AZ_NEUCRNo assigned EC number0.73680.86360.6643N/AN/A
A4QVR2H2AZ_MAGO7No assigned EC number0.73680.86360.6690N/AN/A
Q6Y237H2AV_PAGMANo assigned EC number0.970.90900.7812N/AN/A
Q3THW5H2AV_MOUSENo assigned EC number0.970.90900.7812yesN/A
Q4IMD1H2AZ_GIBZENo assigned EC number0.73680.86360.6597yesN/A
A5DQL2H2AZ_PICGUNo assigned EC number0.70870.90900.7518N/AN/A
Q32LA7H2AV_BOVINNo assigned EC number0.970.90900.7812yesN/A
Q5AUJ1H2AZ_EMENINo assigned EC number0.74460.85450.6911yesN/A
Q12692H2AZ_YEASTNo assigned EC number0.71840.90900.7462yesN/A
Q71PD7H2AV_DANRENo assigned EC number0.970.90900.7812yesN/A
Q84MP7H2AV3_ORYSJNo assigned EC number0.90520.86360.6934noN/A
P02272H2AV_CHICKNo assigned EC number0.970.90900.7812yesN/A
Q1DTG2H2AZ_COCIMNo assigned EC number0.75530.85450.6811N/AN/A
P08991H2AV_STRPUNo assigned EC number0.980.90900.8yesN/A
Q6GM74H2AV_XENLANo assigned EC number0.970.90900.7812N/AN/A
O23628H2AV1_ARATHNo assigned EC number0.88420.86360.6985yesN/A
P22647H2AZ_ONCMYNo assigned EC number0.96070.92720.7968N/AN/A
A1C5F1H2AZ_ASPCLNo assigned EC number0.74460.85450.6811N/AN/A
Q5ZMD6H2AZ_CHICKNo assigned EC number0.96070.92720.7968yesN/A
Q4WE68H2AZ_ASPFUNo assigned EC number0.74460.85450.6811yesN/A
A1D0C1H2AZ_NEOFINo assigned EC number0.74460.85450.6811N/AN/A
Q9C944H2AV3_ARATHNo assigned EC number0.88420.86360.7089noN/A
Q6YNC8H2AZ_SHEEPNo assigned EC number0.96070.92720.7968N/AN/A
Q8S857H2AV2_ORYSJNo assigned EC number0.88420.86360.6834noN/A
P0CO00H2AZ_CRYNJNo assigned EC number0.75750.90.7173yesN/A
P0CO01H2AZ_CRYNBNo assigned EC number0.75750.90.7173N/AN/A
P08985H2AV_DROMENo assigned EC number0.97910.87270.6808yesN/A
Q2UJ80H2AZ_ASPORNo assigned EC number0.74460.85450.6811yesN/A
P0C0S6H2AZ_MOUSENo assigned EC number0.96070.92720.7968yesN/A
P0C0S7H2AZ_RATNo assigned EC number0.96070.92720.7968yesN/A
P0C0S4H2AZ_BOVINNo assigned EC number0.96070.92720.7968yesN/A
P0C0S5H2AZ_HUMANNo assigned EC number0.96070.92720.7968yesN/A
P70094H2AZL_XENLANo assigned EC number0.92150.92720.7968N/AN/A
O62695H2AV_RABITNo assigned EC number0.960.90900.7812yesN/A
Q6C341H2AZ_YARLINo assigned EC number0.73680.86360.6785yesN/A
Q27511H2AV_CAEELNo assigned EC number0.87120.91810.7214yesN/A
Q2GUP0H2AZ_CHAGBNo assigned EC number0.73680.86360.6643N/AN/A
Q09FM9H2AZ_MONPUNo assigned EC number0.74460.85450.6911N/AN/A
A2R702H2AZ_ASPNCNo assigned EC number0.74460.85450.6811yesN/A
Q5AEE1H2AZ_CANALNo assigned EC number0.74460.85450.7067N/AN/A
Q71UI9H2AV_HUMANNo assigned EC number0.970.90900.7812yesN/A
P48003H2AZ_SCHPONo assigned EC number0.73260.91810.7266yesN/A
Q5BJ65H2AV_XENTRNo assigned EC number0.970.90900.7812yesN/A
P08992H2AV_TETTSNo assigned EC number0.81810.90.6780N/AN/A
Q9SII0H2AV2_ARATHNo assigned EC number0.87360.86360.6985noN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query110
PLN00154136 PLN00154, PLN00154, histone H2A; Provisional 2e-60
PTZ00017134 PTZ00017, PTZ00017, histone H2A; Provisional 7e-54
cd00074115 cd00074, H2A, Histone 2A; H2A is a subunit of the 7e-52
smart00414106 smart00414, H2A, Histone 2A 2e-51
COG5262132 COG5262, HTA1, Histone H2A [Chromatin structure an 9e-40
PLN00157132 PLN00157, PLN00157, histone H2A; Provisional 1e-34
PLN00156139 PLN00156, PLN00156, histone H2AX; Provisional 8e-33
PLN00153129 PLN00153, PLN00153, histone H2A; Provisional 2e-29
pfam0012575 pfam00125, Histone, Core histone H2A/H2B/H3/H4 3e-21
PTZ00252134 PTZ00252, PTZ00252, histone H2A; Provisional 4e-20
PLN0015558 PLN00155, PLN00155, histone H2A; Provisional 2e-04
COG5247113 COG5247, BUR6, Class 2 transcription repressor NC2 4e-04
>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional Back     alignment and domain information 
 Score =  180 bits (459), Expect = 2e-60
 Identities = 85/94 (90%), Positives = 89/94 (94%)

Query: 10  FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
           FPVGRIHR LK R ++HGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 39  FPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHL 98

Query: 70  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 103
           QLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 99  QLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132

Length = 136
>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional Back     alignment and domain information
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome Back     alignment and domain information
>gnl|CDD|197711 smart00414, H2A, Histone 2A Back     alignment and domain information
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional Back     alignment and domain information
>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional Back     alignment and domain information
>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional Back     alignment and domain information
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4 Back     alignment and domain information
>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional Back     alignment and domain information
>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional Back     alignment and domain information
>gnl|CDD|227572 COG5247, BUR6, Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 110
PLN00154136 histone H2A; Provisional 100.0
PTZ00252134 histone H2A; Provisional 100.0
PLN00153129 histone H2A; Provisional 100.0
PLN00157132 histone H2A; Provisional 100.0
PLN00156139 histone H2AX; Provisional 100.0
PTZ00017134 histone H2A; Provisional 100.0
smart00414106 H2A Histone 2A. 100.0
KOG1756|consensus131 100.0
cd00074115 H2A Histone 2A; H2A is a subunit of the nucleosome 100.0
COG5262132 HTA1 Histone H2A [Chromatin structure and dynamics 100.0
KOG1757|consensus131 100.0
PLN0015558 histone H2A; Provisional 99.7
PF0012575 Histone: Core histone H2A/H2B/H3/H4 histone h2a si 99.6
COG5247113 BUR6 Class 2 transcription repressor NC2, alpha su 99.44
KOG1659|consensus 224 99.2
PF0080865 CBFD_NFYB_HMF: Histone-like transcription factor ( 99.19
smart0080365 TAF TATA box binding protein associated factor. TA 99.09
COG203691 HHT1 Histones H3 and H4 [Chromatin structure and d 99.09
PLN00035103 histone H4; Provisional 98.92
smart0041774 H4 Histone H4. 98.88
cd0007685 H4 Histone H4, one of the four histones, along wit 98.88
PTZ00015102 histone H4; Provisional 98.83
cd07979117 TAF9 TATA Binding Protein (TBP) Associated Factor 98.26
cd0798172 TAF12 TATA Binding Protein (TBP) Associated Factor 98.24
KOG1657|consensus236 98.21
COG5208286 HAP5 CCAAT-binding factor, subunit C [Transcriptio 98.08
smart0057677 BTP Bromodomain transcription factors and PHD doma 97.82
PF0296966 TAF: TATA box binding protein associated factor (T 97.82
cd08050 343 TAF6 TATA Binding Protein (TBP) Associated Factor 97.75
smart00428105 H3 Histone H3. 97.74
cd0804885 TAF11 TATA Binding Protein (TBP) Associated Factor 97.39
KOG0869|consensus168 97.3
smart0042789 H2B Histone H2B. 97.08
PLN00158116 histone H2B; Provisional 96.95
PF1563076 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 96.84
PTZ00463117 histone H2B; Provisional 96.81
KOG3219|consensus195 96.28
PLN0016097 histone H3; Provisional 96.25
PF0471990 TAFII28: hTAFII28-like protein conserved region; I 96.23
KOG0871|consensus156 96.22
PF15511414 CENP-T: Centromere kinetochore component CENP-T; P 96.21
PLN00121136 histone H3; Provisional 96.07
PF02291129 TFIID-31kDa: Transcription initiation factor IID, 96.04
PF0941572 CENP-X: CENP-S associating Centromere protein X; I 95.99
PF0752477 Bromo_TP: Bromodomain associated; InterPro: IPR006 95.88
PLN00161135 histone H3; Provisional 95.87
PF0384768 TFIID_20kDa: Transcription initiation factor TFIID 95.85
PTZ00018136 histone H3; Provisional 95.82
KOG0870|consensus172 95.52
PF0226993 TFIID-18kDa: Transcription initiation factor IID, 94.36
KOG1745|consensus137 94.29
KOG1142|consensus258 93.96
KOG1658|consensus162 93.77
KOG3467|consensus103 93.13
KOG1744|consensus127 93.12
cd0797892 TAF13 The TATA Binding Protein (TBP) Associated Fa 91.82
COG5094145 TAF9 Transcription initiation factor TFIID, subuni 86.8
KOG3334|consensus148 86.14
COG5150148 Class 2 transcription repressor NC2, beta subunit 85.15
>PLN00154 histone H2A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-46  Score=263.94  Aligned_cols=105  Identities=81%  Similarity=1.155  Sum_probs=100.3

Q ss_pred             cccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhh
Q psy9662           3 EWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL   82 (110)
Q Consensus         3 ~~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L   82 (110)
                      +.||||||||+||+|+|++++++.+||+++|||||+||||||++||||+|+|.|++++++||+|+||++||+||+||++|
T Consensus        32 S~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrnDeEL~~L  111 (136)
T PLN00154         32 SSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL  111 (136)
T ss_pred             ccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccCcHHHHHH
Confidence            46899999999999999998754589999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCcccccccccccCCcCCC
Q psy9662          83 IKATIAGGGVIPHIHKSLIGKKGTQ  107 (110)
Q Consensus        83 ~~~~i~~~g~~p~~~~~~~~~k~~~  107 (110)
                      |+.||++|||+|+||++++++|++|
T Consensus       112 l~~TIa~GGVlP~i~~~l~~k~~~~  136 (136)
T PLN00154        112 IKGTIAGGGVIPHIHKSLINKSTKK  136 (136)
T ss_pred             hcCCccCCccCCCcchhhcccccCC
Confidence            9999999999999999999998765

>PTZ00252 histone H2A; Provisional Back     alignment and domain information
>PLN00153 histone H2A; Provisional Back     alignment and domain information
>PLN00157 histone H2A; Provisional Back     alignment and domain information
>PLN00156 histone H2AX; Provisional Back     alignment and domain information
>PTZ00017 histone H2A; Provisional Back     alignment and domain information
>smart00414 H2A Histone 2A Back     alignment and domain information
>KOG1756|consensus Back     alignment and domain information
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome Back     alignment and domain information
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1757|consensus Back     alignment and domain information
>PLN00155 histone H2A; Provisional Back     alignment and domain information
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ] Back     alignment and domain information
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription] Back     alignment and domain information
>KOG1659|consensus Back     alignment and domain information
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin Back     alignment and domain information
>smart00803 TAF TATA box binding protein associated factor Back     alignment and domain information
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics] Back     alignment and domain information
>PLN00035 histone H4; Provisional Back     alignment and domain information
>smart00417 H4 Histone H4 Back     alignment and domain information
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution Back     alignment and domain information
>PTZ00015 histone H4; Provisional Back     alignment and domain information
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG1657|consensus Back     alignment and domain information
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription] Back     alignment and domain information
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins Back     alignment and domain information
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>smart00428 H3 Histone H3 Back     alignment and domain information
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG0869|consensus Back     alignment and domain information
>smart00427 H2B Histone H2B Back     alignment and domain information
>PLN00158 histone H2B; Provisional Back     alignment and domain information
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C Back     alignment and domain information
>PTZ00463 histone H2B; Provisional Back     alignment and domain information
>KOG3219|consensus Back     alignment and domain information
>PLN00160 histone H3; Provisional Back     alignment and domain information
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex Back     alignment and domain information
>KOG0871|consensus Back     alignment and domain information
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T Back     alignment and domain information
>PLN00121 histone H3; Provisional Back     alignment and domain information
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] Back     alignment and domain information
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex Back     alignment and domain information
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO) Back     alignment and domain information
>PLN00161 histone H3; Provisional Back     alignment and domain information
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] Back     alignment and domain information
>PTZ00018 histone H3; Provisional Back     alignment and domain information
>KOG0870|consensus Back     alignment and domain information
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18) Back     alignment and domain information
>KOG1745|consensus Back     alignment and domain information
>KOG1142|consensus Back     alignment and domain information
>KOG1658|consensus Back     alignment and domain information
>KOG3467|consensus Back     alignment and domain information
>KOG1744|consensus Back     alignment and domain information
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG3334|consensus Back     alignment and domain information
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query110
1f66_C128 2.6 A Crystal Structure Of A Nucleosome Core Partic 1e-51
2jss_A192 Nmr Structure Of Chaperone Chz1 Complexed With Hist 5e-35
1eqz_A129 X-Ray Structure Of The Nucleosome Core Particle At 2e-26
2hio_A128 Histone Octamer (Chicken), Chromosomal Protein Leng 2e-26
2cv5_C130 Crystal Structure Of Human Nucleosome Core Particle 2e-26
2f8n_K149 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc 3e-26
3a6n_C133 The Nucleosome Containing A Testis-Specific Histone 3e-26
1m18_C129 Ligand Binding Alters The Structure And Dynamics Of 4e-26
1zbb_C129 Structure Of The 4_601_167 Tetranucleosome Length = 4e-26
3kwq_C107 Structural Characterization Of H3k56q Nucleosomes A 4e-26
3c1b_C129 The Effect Of H3 K79 Dimethylation And H4 K20 Trime 4e-26
1aoi_C116 Complex Between Nucleosome Core Particle (H3,H4,H2a 4e-26
1s32_C119 Molecular Recognition Of The Nucleosomal 'supergroo 4e-26
2nqb_C123 Drosophila Nucleosome Structure Length = 123 7e-26
1id3_C131 Crystal Structure Of The Yeast Nucleosome Core Part 8e-26
2pyo_C120 Drosophila Nucleosome Core Length = 120 1e-25
1kx3_C128 X-Ray Structure Of The Nucleosome Core Particle, Nc 2e-25
1zla_C129 X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L 3e-25
1hio_A95 Histone Octamer (Chicken), Chromosomal Protein, Alp 2e-24
1u35_C120 Crystal Structure Of The Nucleosome Core Particle C 2e-23
2xql_A91 Fitting Of The H2a-H2b Histones In The Electron Mic 3e-22
1q9c_A191 Crystal Structure Of The Histone Domain Of Son Of S 5e-05
3ksy_A 1049 Crystal Structure Of The Histone Domain, Dh-Ph Unit 1e-04
>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 128 Back     alignment and structure 
Iteration: 1

 Score =  197 bits (501), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/102 (96%), Positives = 99/102 (97%)
Query: 9   NFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 68
            FPVGRIHRHLK+RTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 27  QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 86
Query: 69  LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQKPV 110
           LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKG QK V
Sbjct: 87  LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV 128
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192 Back     alignment and structure
>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 129 Back     alignment and structure
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein Length = 128 Back     alignment and structure
>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle Length = 130 Back     alignment and structure
>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 149 Back     alignment and structure
>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 133 Back     alignment and structure
>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 129 Back     alignment and structure
>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome Length = 129 Back     alignment and structure
>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 107 Back     alignment and structure
>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 129 Back     alignment and structure
>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116 Back     alignment and structure
>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 119 Back     alignment and structure
>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure Length = 123 Back     alignment and structure
>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 131 Back     alignment and structure
>pdb|2PYO|C Chain C, Drosophila Nucleosome Core Length = 120 Back     alignment and structure
>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 128 Back     alignment and structure
>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 129 Back     alignment and structure
>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 95 Back     alignment and structure
>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 120 Back     alignment and structure
>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 91 Back     alignment and structure
>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of Sevenless Length = 191 Back     alignment and structure
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query110
1f66_C128 Histone H2A.Z; nucleosome, chromatin, histone vari 8e-34
2f8n_K149 Histone H2A type 1; nucleosome, NCP, macroh2A, his 3e-33
1tzy_A129 Histone H2A-IV; histone-fold, tetramer-dimer-dimer 8e-33
2nqb_C123 Histone H2A; nucleosome, NCP, chromatin, structura 3e-30
2f8n_G120 Core histone macro-H2A.1; nucleosome, NCP, macroh2 6e-30
1id3_C131 Histone H2A.1; nucleosome core particle, chromatin 1e-28
2jss_A192 Chimera of histone H2B.1 and histone H2A.Z; histon 1e-25
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 2e-14
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 2e-09
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 3e-08
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Length = 128 Back     alignment and structure
 Score =  113 bits (282), Expect = 8e-34
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query: 10  FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
           FPVGRIHRHLK+RTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 28  FPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 87

Query: 70  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGTQKPV 110
           QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKG QK V
Sbjct: 88  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV 128
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Length = 149 Back     alignment and structure
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Length = 129 Back     alignment and structure
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Length = 123 Back     alignment and structure
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Length = 120 Back     alignment and structure
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Length = 131 Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192 Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Length = 98 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Length = 97 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query110
1f66_C128 Histone H2A.Z; nucleosome, chromatin, histone vari 100.0
2nqb_C123 Histone H2A; nucleosome, NCP, chromatin, structura 100.0
1id3_C131 Histone H2A.1; nucleosome core particle, chromatin 100.0
2f8n_G120 Core histone macro-H2A.1; nucleosome, NCP, macroh2 100.0
1tzy_A129 Histone H2A-IV; histone-fold, tetramer-dimer-dimer 100.0
2f8n_K149 Histone H2A type 1; nucleosome, NCP, macroh2A, his 100.0
2jss_A192 Chimera of histone H2B.1 and histone H2A.Z; histon 100.0
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 99.92
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 99.91
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 99.83
4g92_C119 HAPE; transcription factor, nucleosome, minor groo 99.8
2byk_A140 Chrac-16; nucleosome sliding, histone fold, DNA-bi 99.68
1f1e_A154 Histone fold protein; archaeal histone protein, DN 99.56
2yfw_B103 Histone H4, H4; cell cycle, kinetochore, centromer 99.51
1tzy_D103 Histone H4-VI; histone-fold, tetramer-dimer-dimer, 99.51
1ku5_A70 HPHA, archaeal histon; histone fold, DNA binding p 99.39
1b67_A68 Protein (histone HMFA); DNA binding protein; 1.48A 99.32
2byk_B128 Chrac-14; nucleosome sliding, histone fold, DNA-bi 99.18
1n1j_A93 NF-YB; histone-like PAIR, DNA binding protein; 1.6 99.14
2hue_C84 Histone H4; mini beta sheet, elongated beta sandwh 99.03
1taf_B70 TFIID TBP associated factor 62; transcription init 99.0
1id3_B102 Histone H4; nucleosome core particle, chromatin, p 98.98
1f1e_A154 Histone fold protein; archaeal histone protein, DN 98.94
3b0c_W76 CENP-W, centromere protein W; histone fold, DNA bi 98.94
3b0c_T111 CENP-T, centromere protein T; histone fold, DNA bi 98.75
1taf_A68 TFIID TBP associated factor 42; transcription init 98.72
1jfi_B179 DR1 protein, transcription regulator NC2 beta chai 98.59
2hue_B77 Histone H3; mini beta sheet, elongated beta sandwh 98.42
4dra_A113 Centromere protein S; DNA binding complex, DNA dam 98.4
3v9r_A90 MHF1, uncharacterized protein YOL086W-A; histone f 98.38
3b0b_B107 CENP-S, centromere protein S; histone fold, DNA bi 98.28
3nqj_A82 Histone H3-like centromeric protein A; alpha helix 98.24
2yfv_A100 Histone H3-like centromeric protein CSE4; cell cyc 98.21
1tzy_C136 Histone H3; histone-fold, tetramer-dimer-dimer, DN 98.16
3vh5_A140 CENP-S; histone fold, chromosome segregation, DNA 98.12
3nqu_A140 Histone H3-like centromeric protein A; alpha helix 98.11
3r45_A156 Histone H3-like centromeric protein A; histone fol 98.1
2l5a_A235 Histone H3-like centromeric protein CSE4, protein 98.07
2nqb_D123 Histone H2B; nucleosome, NCP, chromatin, structura 97.99
1tzy_B126 Histone H2B; histone-fold, tetramer-dimer-dimer, D 97.95
2ly8_A121 Budding yeast chaperone SCM3; centromere protein, 97.93
4dra_E84 Centromere protein X; DNA binding complex, DNA dam 97.62
2jss_A192 Chimera of histone H2B.1 and histone H2A.Z; histon 97.44
3b0b_C81 CENP-X, centromere protein X; histone fold, DNA bi 96.76
1bh9_B89 TAFII28; histone fold, tata binding protein, trans 96.67
1h3o_B76 Transcription initiation factor TFIID 20/15 kDa su 95.16
2l5a_A 235 Histone H3-like centromeric protein CSE4, protein 93.57
1wwi_A148 Hypothetical protein TTHA1479; structural genomics 93.05
1r4v_A171 Hypothetical protein AQ_328; structural genomics, 89.33
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 89.18
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 82.75
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 82.69
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 81.67
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Back     alignment and structure
Probab=100.00  E-value=1.6e-45  Score=257.10  Aligned_cols=106  Identities=92%  Similarity=1.253  Sum_probs=94.7

Q ss_pred             ccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhhh
Q psy9662           4 WEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI   83 (110)
Q Consensus         4 ~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L~   83 (110)
                      .||||||||+||+|||++++++.+||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||+||+||++||
T Consensus        22 ~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll  101 (128)
T 1f66_C           22 QRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI  101 (128)
T ss_dssp             HHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHC
T ss_pred             ccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhh
Confidence            58999999999999999998644699999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCcccccccccccCCcCCCCC
Q psy9662          84 KATIAGGGVIPHIHKSLIGKKGTQKP  109 (110)
Q Consensus        84 ~~~i~~~g~~p~~~~~~~~~k~~~~~  109 (110)
                      +.||++|||+|+||++|+++|+++|.
T Consensus       102 ~~tia~ggv~P~i~~~l~~k~~~~~~  127 (128)
T 1f66_C          102 KATIAGGGVIPHIHKSLIGKKGQQKT  127 (128)
T ss_dssp             CSEETTCCCCCCCCGGGC--------
T ss_pred             cceecCCccCCCCCHHhcCcccccCC
Confidence            98999999999999999999988764
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Back     alignment and structure
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Back     alignment and structure
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Back     alignment and structure
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C* Back     alignment and structure
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} Back     alignment and structure
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... Back     alignment and structure
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Back     alignment and structure
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Back     alignment and structure
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Back     alignment and structure
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B Back     alignment and structure
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W Back     alignment and structure
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T Back     alignment and structure
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Back     alignment and structure
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A Back     alignment and structure
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} Back     alignment and structure
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Back     alignment and structure
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Back     alignment and structure
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Back     alignment and structure
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A Back     alignment and structure
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Back     alignment and structure
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Back     alignment and structure
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Back     alignment and structure
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Back     alignment and structure
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Back     alignment and structure
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D Back     alignment and structure
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B* Back     alignment and structure
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A Back     alignment and structure
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4 Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Back     alignment and structure
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 110
d1u35c1106 a.22.1.1 (C:814-919) macro-H2A.1, histone domain { 3e-45
d1tzya_106 a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus) 7e-43
d1f66c_103 a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), v 2e-42
d1q9ca_172 a.22.1.3 (A:) Histone domain of Son of sevenless p 9e-32
d1jfia_66 a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chai 7e-18
d1n1jb_78 a.22.1.3 (B:) Nuclear transcription factor Y subun 1e-17
d1f1ea_151 a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy 1e-08
d1f1ea_151 a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy 4e-04
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (353), Expect = 3e-45
 Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 2/96 (2%)

Query: 10  FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 69
           FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELA NA++D K  R+TPRH+
Sbjct: 12  FPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHI 70

Query: 70  QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 104
            LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK
Sbjct: 71  LLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 106
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 106 Back     information, alignment and structure
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172 Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151 Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query110
d1u35c1106 macro-H2A.1, histone domain {Human (Homo sapiens) 100.0
d1tzya_106 Histone H2A {Chicken (Gallus gallus), erythrocytes 100.0
d1f66c_103 Histone H2A {Human (Homo sapiens), variant H2A.Z [ 100.0
d1q9ca_172 Histone domain of Son of sevenless protein {Human 99.96
d1jfia_66 Negative cofactor 2, NC2, alpha chain {Human (Homo 99.7
d1n1jb_78 Nuclear transcription factor Y subunit gamma (Nf-Y 99.61
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 99.5
d1htaa_68 Archaeal histone {Archaeon Methanothermus fervidus 99.36
d1ku5a_66 Archaeal histone {Archaeon (Pyrococcus horikoshii) 99.34
d1n1ja_87 Nuclear transcription factor Y subunit beta (Nf-Yb 99.18
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 98.97
d1jfib_135 Negative cofactor 2, NC2, beta chain {Human (Homo 98.89
d2huec182 Histone H4 {African clawed frog (Xenopus laevis) [ 98.79
d2bykb189 Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax 98.7
d2byka172 Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax 98.65
d1tzyc_95 Histone H3 {Chicken (Gallus gallus), erythrocytes 97.45
d1tzyb_92 Histone H2B {Chicken (Gallus gallus), erythrocytes 97.44
d1tafb_70 TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta 97.36
d1bh9b_89 TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]} 96.55
d1tafa_68 TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta 96.53
d1h3ob_74 TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom 94.47
d1wwia1148 Hypothetical protein TTHA1479 {Thermus thermophilu 93.15
d1k6ka_142 N-terminal, ClpS-binding domain of ClpA, an Hsp100 91.32
d1qvra1145 N-terminal domain of ClpB (heat shock protein F84. 88.76
d1khya_139 N-terminal domain of ClpB (heat shock protein F84. 87.16
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 84.62
d1r4va_151 Hypothetical protein Aq_328 {Aquifex aeolicus [Tax 83.55
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-47  Score=255.19  Aligned_cols=101  Identities=53%  Similarity=0.800  Sum_probs=97.2

Q ss_pred             cccCCCccchhhhhhhhhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccccccccccCchhhhhh
Q psy9662           3 EWEQQPNFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL   82 (110)
Q Consensus         3 ~~ragl~fPV~ri~r~Lk~~~~~~~Rvs~~A~vyLaavLEyl~~EIlelA~~~A~~~~~k~I~p~hI~~Ai~nD~EL~~L   82 (110)
                      +.||||||||+||+|+|+++++ ++||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+||+||++|
T Consensus         5 s~ragL~FpV~ri~r~Lk~~~~-~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lairnD~EL~~L   83 (106)
T d1u35c1           5 SAKAGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQL   83 (106)
T ss_dssp             HHHHTCSSCHHHHHHHHHHHST-TSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHH
T ss_pred             cccCCcccCHHHHHHHHhCCCC-ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhcccCHHHHHHH
Confidence            4689999999999999999876 589999999999999999999999999999999999999999999999999999999


Q ss_pred             hh-hhhcCCcccccccccccCCc
Q psy9662          83 IK-ATIAGGGVIPHIHKSLIGKK  104 (110)
Q Consensus        83 ~~-~~i~~~g~~p~~~~~~~~~k  104 (110)
                      |+ +||++|||+|+||++|++||
T Consensus        84 ~~~vtI~~GGv~p~Ih~~Ll~kk  106 (106)
T d1u35c1          84 LKGVTIASGGVLPNIHPELLAKK  106 (106)
T ss_dssp             TTTEEETTCCCCCCCCGGGSCCC
T ss_pred             HcCCeEeCCcccCCcCHHhcCCC
Confidence            95 89999999999999999987
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure