Psyllid ID: psy9679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MLVNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEEEccccEEEEEEcccccEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
ccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccHEEcccccEEEEEEEcccccEEEcccccccEEEccccHEEcc
Coil and Loop (DISEMBL)
mlvnpngkmihyvprpvdavvsesssstqhnhrksnsldassasspvasdpnnrkpkpqpvptvrerfrcivpyppnseyeLELRVGDLIYVhkkrddgwykgtlqrtgrtglfpasfvesf
Flexible Loop (DISEMBL)
mlvnpngkmihyvprPVDAVVSESSsstqhnhrksnsldassasspvasdpnnrkpkpqpvptvrerfRCIVpyppnseyeleLRVGDLIYVHkkrddgwykgtlqrtgrtglfpasfvesf
Low Complexity Region (SEG)
MLVNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKsnsldassasspvasdpnnRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF
Disordered region (IsUnstruct)
****************************************************************RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP*******
Disordered Region (DISOPRED)
*******************************************************************FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF
Disordered Region (DISEMBL)
MLVNPNGKMIHYVPRPVDA******************************************PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF
Disordered Region (DISPRO)
******GKMIHY**************************************************TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q8C120	878	SH3 domain-containing RIN	yes	N/A	0.729	0.101	0.563	6e-25
Q8TEJ3	882	SH3 domain-containing RIN	yes	N/A	0.672	0.092	0.571	1e-24
Q5RBR0	888	E3 ubiquitin-protein liga	yes	N/A	0.852	0.117	0.491	1e-23
Q7Z6J0	888	E3 ubiquitin-protein liga	no	N/A	0.852	0.117	0.491	1e-23
Q69ZI1	892	E3 ubiquitin-protein liga	no	N/A	0.721	0.098	0.541	6e-23
Q71F54	894	E3 ubiquitin-protein liga	no	N/A	0.721	0.098	0.541	8e-23
A5D7F8	840	E3 ubiquitin-protein liga	no	N/A	0.745	0.108	0.521	1e-21
A5D8S5	867	E3 ubiquitin-protein liga	yes	N/A	0.418	0.058	0.688	1e-21
Q28E95	861	E3 ubiquitin-protein liga	no	N/A	0.885	0.125	0.445	3e-21
Q6NRD3	826	E3 ubiquitin-protein liga	N/A	N/A	0.762	0.112	0.467	2e-20

>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus GN=Sh3rf3 PE=2 SV=2

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 5/94 (5%)

Query: 32  HRKSNSLDASSASSP---VASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGD 88
           HRK+ SLD + + SP         + +P+P+P+P  RER+R +V YPP SE E+EL+ GD
Sbjct: 787 HRKAGSLDLNFSLSPSRQATLSMASIRPEPKPLP--RERYRVVVSYPPQSEAEIELKEGD 844

Query: 89  LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           +++VHKK +DGW+KGTLQR GRTGLFP SFVESF
Sbjct: 845 IVFVHKKHEDGWFKGTLQRNGRTGLFPGSFVESF 878

Mus musculus (taxid: 10090)

>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens GN=SH3RF3 PE=1 SV=2

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 66/91 (72%)

Query: 32  HRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIY 91
           HRK+ SLD +  S    +  +    +P+P    RER+R +V YPP SE E+EL+ GD+++
Sbjct: 792 HRKAGSLDLNFTSPSRQAPLSMAAIRPEPKLLPRERYRVVVSYPPQSEAEIELKEGDIVF 851

Query: 92  VHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           VHKKR+DGWYKGTLQR GRTGLFP SFVESF
Sbjct: 852 VHKKREDGWYKGTLQRNGRTGLFPGSFVESF 882

Homo sapiens (taxid: 9606)

>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 8/112 (7%)

Query: 16  PVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPV-----PTVRERFRC 70
           PV   V+ ++ +    HRK++SLD++    P+A  P        PV     P V ER R 
Sbjct: 780 PVTTAVAGAALAQDAFHRKASSLDSAV---PIAPPPRQACSSLGPVLNESRPVVCERHRV 836

Query: 71  IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+ 
Sbjct: 837 VVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI 888

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 8/112 (7%)

Query: 16  PVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPV-----PTVRERFRC 70
           PV   V+ ++ +    HRK++SLD++    P+A  P        PV     P V ER R 
Sbjct: 780 PVTTAVAGAALAQDAFHRKASSLDSAV---PIAPPPRQACSSLGPVLNESRPVVCERHRV 836

Query: 71  IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+ 
Sbjct: 837 VVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI 888

Plays an essential role in the targeting of HIV-1 Gag to the plasma membrane, this function is dependent on it's RING domain, and hence it's E3 ligase activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1 SV=2

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 66/96 (68%), Gaps = 8/96 (8%)

Query: 32  HRKSNSLDASSASSPVASDPNNRKPKPQPV-----PTVRERFRCIVPYPPNSEYELELRV 86
           HRK++SLD++    P+A  P        PV     P V ER R +V YPP SE ELEL+ 
Sbjct: 800 HRKTSSLDSAV---PIAPPPRQACSSLGPVMNEARPVVCERHRVVVSYPPQSEAELELKE 856

Query: 87  GDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+ 
Sbjct: 857 GDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI 892

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1 PE=1 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 66/96 (68%), Gaps = 8/96 (8%)

Query: 32  HRKSNSLDASSASSPVASDPNNRKPKPQPV-----PTVRERFRCIVPYPPNSEYELELRV 86
           HRK++SLD++    P+A  P        PV     P V ER R +V YPP SE ELEL+ 
Sbjct: 802 HRKTSSLDSAV---PIAPPPRQACSSLGPVMNEARPVVCERHRVVVSYPPQSEAELELKE 858

Query: 87  GDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+ 
Sbjct: 859 GDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI 894

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 1/92 (1%)

Query: 32  HRKSNSLDASSASSPVASDPNNRKPKPQPV-PTVRERFRCIVPYPPNSEYELELRVGDLI 90
            R+++SLD++  + P     ++  P    V P V ER R +V YPP SE ELEL+ GD++
Sbjct: 749 QRRASSLDSAPVAPPPRQPCSSLGPAASEVRPAVCERHRVVVSYPPQSEAELELKEGDIV 808

Query: 91  YVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           +VHKKR+DGW+KGTLQR G+TGLFP SFVE+ 
Sbjct: 809 FVHKKREDGWFKGTLQRNGKTGLFPGSFVENI 840

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination. Stimulates ubiquitination of potassium channel KCNJ1, enhancing it's dynamin-dependent and clathrin-independent endocytosis.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2 SV=2

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 51/61 (83%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           P V ER+R +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR GRTGLFP SFV+S
Sbjct: 807 PIVCERYRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGRTGLFPGSFVDS 866

Query: 122 F 122
            
Sbjct: 867 I 867

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis GN=sh3rf1 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 20/128 (15%)

Query: 3   VNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDP--------NNR 54
           VN NG++       VD  +  +S+  Q N RK  SLD +   +P    P        N+ 
Sbjct: 746 VNGNGRVASCT---VDCDLVSASALVQDN-RKPASLDTNVPIAPPPRQPCSSLGTVLNDS 801

Query: 55  KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 114
           +P         ER+R +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR G+TGLF
Sbjct: 802 RPC--------ERYRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLF 853

Query: 115 PASFVESF 122
           P SFVE+ 
Sbjct: 854 PGSFVENI 861

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 16/109 (14%)

Query: 22  SESSSSTQHNHRKSNSLDASSASSP--------VASDPNNRKPKPQPVPTVRERFRCIVP 73
           S S+S+   ++RK  SLD +   +P        + S  N+ +P         ER+R +V 
Sbjct: 726 SVSASTPAQDNRKPASLDNNIPIAPPPRQPCSSLGSVLNDSRPC--------ERYRVMVS 777

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+ 
Sbjct: 778 YPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI 826

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as ube2d1 or ube2n and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitination.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
427788663	905	Putative e3 ubiquitin-protein ligase [Rh	0.754	0.101	0.653	2e-30
157110169	771	Plenty of SH3s, putative [Aedes aegypti]	0.704	0.111	0.707	3e-29
350415760	894	PREDICTED: SH3 domain-containing RING fi	0.655	0.089	0.673	6e-29
350415763	888	PREDICTED: SH3 domain-containing RING fi	0.655	0.090	0.673	6e-29
340728739	894	PREDICTED: LOW QUALITY PROTEIN: putative	0.655	0.089	0.673	6e-29
350415757	838	PREDICTED: SH3 domain-containing RING fi	0.655	0.095	0.673	7e-29
345487941	908	PREDICTED: SH3 domain-containing RING fi	0.721	0.096	0.643	2e-28
383851890	894	PREDICTED: SH3 domain-containing RING fi	0.655	0.089	0.673	2e-28
383851892	888	PREDICTED: SH3 domain-containing RING fi	0.655	0.090	0.673	2e-28
307195492	917	SH3 domain-containing RING finger protei	0.680	0.090	0.673	5e-28

>gi|427788663|gb|JAA59783.1| Putative e3 ubiquitin-protein ligase [Rhipicephalus pulchellus]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 9/101 (8%)

Query: 22  SESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYE 81
           SE   S Q  H+K++SLD +        D    +PK QP P VRERFRCIVPYPPNSEYE
Sbjct: 814 SEVLGSQQALHKKTSSLDGN--------DSLKARPK-QPAPLVRERFRCIVPYPPNSEYE 864

Query: 82  LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           LEL+ GD++YVHKKR+DGW+KGTLQRTG+TGLFP SFVESF
Sbjct: 865 LELKQGDVVYVHKKREDGWFKGTLQRTGKTGLFPGSFVESF 905

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110169|ref|XP_001650981.1| Plenty of SH3s, putative [Aedes aegypti] gi|108883932|gb|EAT48157.1| AAEL000763-PA, partial [Aedes aegypti]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 72/89 (80%), Gaps = 3/89 (3%)

Query: 32  HRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIY 91
           HRKS SLDAS+  S +   P+  K   Q   TVRERF+CIVPYPPNSEYELELRVGD++ 
Sbjct: 682 HRKSQSLDASAIISHMNGTPSKSKGHSQ---TVRERFKCIVPYPPNSEYELELRVGDIVL 738

Query: 92  VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           VHKKRD+GWYKGT QR+G+TGLFPASFVE
Sbjct: 739 VHKKRDNGWYKGTHQRSGKTGLFPASFVE 767

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415760|ref|XP_003490742.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 2 [Bombus impatiens]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 73/98 (74%), Gaps = 18/98 (18%)

Query: 30  HNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRER-----FRCIVPYPPNSEYELEL 84
           ++HRKSNSLDA             ++ K QP    RER     FRCIVPYPPNSE+ELEL
Sbjct: 810 NHHRKSNSLDAGMG----------KQTKQQPT---RERERVYRFRCIVPYPPNSEFELEL 856

Query: 85  RVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           RVGD+IYVHKKRDDGWYKGT QRTGRTGLFPASFVE+F
Sbjct: 857 RVGDIIYVHKKRDDGWYKGTQQRTGRTGLFPASFVEAF 894

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415763|ref|XP_003490743.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 3 [Bombus impatiens]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 73/98 (74%), Gaps = 18/98 (18%)

Query: 30  HNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRER-----FRCIVPYPPNSEYELEL 84
           ++HRKSNSLDA             ++ K QP    RER     FRCIVPYPPNSE+ELEL
Sbjct: 804 NHHRKSNSLDAGMG----------KQTKQQPT---RERERVYRFRCIVPYPPNSEFELEL 850

Query: 85  RVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           RVGD+IYVHKKRDDGWYKGT QRTGRTGLFPASFVE+F
Sbjct: 851 RVGDIIYVHKKRDDGWYKGTQQRTGRTGLFPASFVEAF 888

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728739|ref|XP_003402674.1| PREDICTED: LOW QUALITY PROTEIN: putative E3 ubiquitin-protein ligase SH3RF1-like [Bombus terrestris]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 73/98 (74%), Gaps = 18/98 (18%)

Query: 30  HNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRER-----FRCIVPYPPNSEYELEL 84
           ++HRKSNSLDA             ++ K QP    RER     FRCIVPYPPNSE+ELEL
Sbjct: 810 NHHRKSNSLDAGMG----------KQTKQQPT---RERERVYRFRCIVPYPPNSEFELEL 856

Query: 85  RVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           RVGD+IYVHKKRDDGWYKGT QRTGRTGLFPASFVE+F
Sbjct: 857 RVGDIIYVHKKRDDGWYKGTQQRTGRTGLFPASFVEAF 894

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415757|ref|XP_003490741.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 1 [Bombus impatiens]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 73/98 (74%), Gaps = 18/98 (18%)

Query: 30  HNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRER-----FRCIVPYPPNSEYELEL 84
           ++HRKSNSLDA             ++ K QP    RER     FRCIVPYPPNSE+ELEL
Sbjct: 754 NHHRKSNSLDAGMG----------KQTKQQPT---RERERVYRFRCIVPYPPNSEFELEL 800

Query: 85  RVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           RVGD+IYVHKKRDDGWYKGT QRTGRTGLFPASFVE+F
Sbjct: 801 RVGDIIYVHKKRDDGWYKGTQQRTGRTGLFPASFVEAF 838

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487941|ref|XP_001606578.2| PREDICTED: SH3 domain-containing RING finger protein 3-like [Nasonia vitripennis]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 75/101 (74%), Gaps = 13/101 (12%)

Query: 25  SSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRER---FRCIVPYPPNSEYE 81
           + +  ++HRKSNSLDA +           ++ K Q     RER   FRCIVPYPPNSE+E
Sbjct: 818 TGTMSNHHRKSNSLDAGTG----------KQVKQQLSSRDRERMYRFRCIVPYPPNSEFE 867

Query: 82  LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           LELRVGD+IYVHKKRDDGWYKGT QRTGRTGLFPASFVE+F
Sbjct: 868 LELRVGDIIYVHKKRDDGWYKGTQQRTGRTGLFPASFVEAF 908

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851890|ref|XP_003701464.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 1 [Megachile rotundata]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 73/98 (74%), Gaps = 18/98 (18%)

Query: 30  HNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRER-----FRCIVPYPPNSEYELEL 84
           ++HRKSNSLDA             ++ K QP    RER     FRCIVPYPPNSE+ELEL
Sbjct: 810 NHHRKSNSLDAGMG----------KQIKQQPS---RERERVYRFRCIVPYPPNSEFELEL 856

Query: 85  RVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           RVGD+IYVHKKRDDGWYKGT QRTGRTGLFPASFVE+F
Sbjct: 857 RVGDIIYVHKKRDDGWYKGTQQRTGRTGLFPASFVEAF 894

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851892|ref|XP_003701465.1| PREDICTED: SH3 domain-containing RING finger protein 3-like isoform 2 [Megachile rotundata]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 73/98 (74%), Gaps = 18/98 (18%)

Query: 30  HNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRER-----FRCIVPYPPNSEYELEL 84
           ++HRKSNSLDA             ++ K QP    RER     FRCIVPYPPNSE+ELEL
Sbjct: 804 NHHRKSNSLDAGMG----------KQIKQQPS---RERERVYRFRCIVPYPPNSEFELEL 850

Query: 85  RVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           RVGD+IYVHKKRDDGWYKGT QRTGRTGLFPASFVE+F
Sbjct: 851 RVGDIIYVHKKRDDGWYKGTQQRTGRTGLFPASFVEAF 888

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195492|gb|EFN77378.1| SH3 domain-containing RING finger protein 3 [Harpegnathos saltator]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 12/95 (12%)

Query: 30  HNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRE--RFRCIVPYPPNSEYELELRVG 87
           ++HRKSNSLDA             ++ K QP        RFRCIVPYPPNSE+ELELRVG
Sbjct: 833 NHHRKSNSLDAGMG----------KQTKQQPSRDRDRVYRFRCIVPYPPNSEFELELRVG 882

Query: 88  DLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           D+IYVHKKRDDGWYKGT QRTGRTGLFPASFVE+F
Sbjct: 883 DIIYVHKKRDDGWYKGTQQRTGRTGLFPASFVEAF 917

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
UNIPROTKB|F1PBV0	882	SH3RF3 "Uncharacterized protei	0.540	0.074	0.696	3.8e-23
UNIPROTKB|F1N2S5	844	SH3RF3 "Uncharacterized protei	0.540	0.078	0.691	6.6e-23
UNIPROTKB|Q8TEJ3	882	SH3RF3 "SH3 domain-containing	0.540	0.074	0.676	5.5e-22
MGI|MGI:2444637	878	Sh3rf3 "SH3 domain containing	0.540	0.075	0.661	2e-21
UNIPROTKB|F1NYR2	892	SH3RF1 "Uncharacterized protei	0.491	0.067	0.683	2.6e-19
RGD|735154	894	Sh3rf1 "SH3 domain containing	0.491	0.067	0.683	2.7e-19
UNIPROTKB|Q71F54	894	Sh3rf1 "E3 ubiquitin-protein l	0.491	0.067	0.683	2.7e-19
ZFIN|ZDB-GENE-030131-6288	880	sh3rf1 "SH3 domain containing	0.491	0.068	0.7	4.5e-19
FB|FBgn0040294	838	POSH "Plenty of SH3s" [Drosoph	0.5	0.072	0.688	5.8e-19
UNIPROTKB|G5E517	709	SH3RF1 "E3 ubiquitin-protein l	0.491	0.084	0.683	1.4e-18

UNIPROTKB|F1PBV0 SH3RF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 269 (99.8 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
 Identities = 46/66 (69%), Positives = 56/66 (84%)

Query:    57 KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
             +P+P P  RER+R +V YPP SE E+EL+ GD+++VHKKR+DGWYKGTLQR GRTGLFP 
Sbjct:   817 RPEPKPLSRERYRVVVSYPPQSEAEIELKEGDIVFVHKKREDGWYKGTLQRNGRTGLFPG 876

Query:   117 SFVESF 122
             SFVESF
Sbjct:   877 SFVESF 882

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N2S5 SH3RF3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 270 (100.1 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
 Identities = 47/68 (69%), Positives = 59/68 (86%)

Query:    55 KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 114
             +P+P+P+P  RER+R +V YPP SE E+EL+ GD+++VHKKR+DGWYKGTLQR GRTGLF
Sbjct:   779 RPEPKPLP--RERYRVVVSYPPQSEAEIELKEGDVVFVHKKREDGWYKGTLQRNGRTGLF 836

Query:   115 PASFVESF 122
             P SFVESF
Sbjct:   837 PGSFVESF 844

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8TEJ3 SH3RF3 "SH3 domain-containing RING finger protein 3" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
 Identities = 46/68 (67%), Positives = 58/68 (85%)

Query:    55 KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 114
             +P+P+ +P  RER+R +V YPP SE E+EL+ GD+++VHKKR+DGWYKGTLQR GRTGLF
Sbjct:   817 RPEPKLLP--RERYRVVVSYPPQSEAEIELKEGDIVFVHKKREDGWYKGTLQRNGRTGLF 874

Query:   115 PASFVESF 122
             P SFVESF
Sbjct:   875 PGSFVESF 882

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2444637 Sh3rf3 "SH3 domain containing ring finger 3" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 45/68 (66%), Positives = 58/68 (85%)

Query:    55 KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 114
             +P+P+P+P  RER+R +V YPP SE E+EL+ GD+++VHKK +DGW+KGTLQR GRTGLF
Sbjct:   813 RPEPKPLP--RERYRVVVSYPPQSEAEIELKEGDIVFVHKKHEDGWFKGTLQRNGRTGLF 870

Query:   115 PASFVESF 122
             P SFVESF
Sbjct:   871 PGSFVESF 878

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NYR2 SH3RF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 41/60 (68%), Positives = 51/60 (85%)

Query:    62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
             P V ER+R +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+
Sbjct:   832 PLVCERYRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVEN 891

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

RGD|735154 Sh3rf1 "SH3 domain containing ring finger 1" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
 Identities = 41/60 (68%), Positives = 50/60 (83%)

Query:    62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
             P V ER R +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+
Sbjct:   834 PVVCERHRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVEN 893

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0046328 "regulation of JNK cascade" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q71F54 Sh3rf1 "E3 ubiquitin-protein ligase SH3RF1" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
 Identities = 41/60 (68%), Positives = 50/60 (83%)

Query:    62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
             P V ER R +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+
Sbjct:   834 PVVCERHRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVEN 893

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6288 sh3rf1 "SH3 domain containing ring finger 1" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 42/60 (70%), Positives = 51/60 (85%)

Query:    62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
             P V ER+R +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR GRTGLFP SFV+S
Sbjct:   820 PIVCERYRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGRTGLFPGSFVDS 879

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

FB|FBgn0040294 POSH "Plenty of SH3s" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
 Identities = 42/61 (68%), Positives = 49/61 (80%)

Query:    60 PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
             P  T   RFRCIVPYPPNS+ ELEL +GD+IYV +K+ +GWYKGT  RT +TGLFPASFV
Sbjct:   775 PYCTRESRFRCIVPYPPNSDIELELHLGDIIYVQRKQKNGWYKGTHARTHKTGLFPASFV 834

Query:   120 E 120
             E
Sbjct:   835 E 835

GO:0008340 "determination of adult lifespan" evidence=NAS;IMP

GO:0008104 "protein localization" evidence=IMP

GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

GO:0030159 "receptor signaling complex scaffold activity" evidence=NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

UNIPROTKB|G5E517 SH3RF1 "E3 ubiquitin-protein ligase SH3RF1" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 41/60 (68%), Positives = 50/60 (83%)

Query:    62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
             P V ER R +V YPP SE ELEL+ GD+++VHKKR+DGW+KGTLQR G+TGLFP SFVE+
Sbjct:   649 PAVCERHRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVEN 708

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8C120	SH3R3_MOUSE	No assigned EC number	0.5638	0.7295	0.1013	yes	N/A
A5D8S5	SH3R1_DANRE	6, ., 3, ., 2, ., -	0.6885	0.4180	0.0588	yes	N/A
Q8TEJ3	SH3R3_HUMAN	No assigned EC number	0.5714	0.6721	0.0929	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.4.1.68	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	122
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	6e-36
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	4e-20
smart00326	56	smart00326, SH3, Src homology 3 domains	5e-17
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-16
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	9e-15
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	1e-14
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	1e-13
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	2e-13
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	2e-13
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	8e-13
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	4e-12
cd11792	55	cd11792, SH3_Fut8, Src homology 3 domain of Alpha1	8e-12
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	1e-11
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	1e-11
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	1e-11
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	1e-11
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	2e-11
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	2e-11
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	4e-11
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	6e-11
pfam00018	47	pfam00018, SH3_1, SH3 domain	7e-11
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	7e-11
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	1e-10
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	1e-10
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	1e-10
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	2e-10
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	2e-10
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	2e-10
cd11918	58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	2e-10
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	3e-10
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	3e-10
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	4e-10
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	4e-10
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	4e-10
cd11925	57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	9e-10
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	1e-09
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	1e-09
cd11788	59	cd11788, SH3_RasGAP, Src Homology 3 domain of Ras	2e-09
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	4e-09
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	5e-09
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	6e-09
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	8e-09
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	1e-08
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-08
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	1e-08
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	1e-08
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	2e-08
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	2e-08
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	4e-08
cd11942	55	cd11942, SH3_JIP2, Src homology 3 domain of JNK-in	7e-08
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	1e-07
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	1e-07
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	1e-07
cd11872	56	cd11872, SH3_DOCK_AB, Src Homology 3 domain of Cla	1e-07
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	1e-07
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	1e-07
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	1e-07
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	2e-07
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	3e-07
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	3e-07
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	4e-07
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	5e-07
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	5e-07
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	5e-07
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	6e-07
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	8e-07
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	9e-07
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	1e-06
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	1e-06
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	1e-06
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	1e-06
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	1e-06
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	1e-06
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	2e-06
cd11851	62	cd11851, SH3_RIM-BP, Src homology 3 domains of Rab	2e-06
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	2e-06
cd11943	55	cd11943, SH3_JIP1, Src homology 3 domain of JNK-in	2e-06
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	2e-06
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	2e-06
cd12050	56	cd12050, SH3_DOCK2_A, Src Homology 3 domain of Cla	3e-06
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	3e-06
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	3e-06
cd12051	56	cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of C	3e-06
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	3e-06
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	4e-06
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	4e-06
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	5e-06
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	5e-06
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	5e-06
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	6e-06
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	6e-06
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	6e-06
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	7e-06
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	7e-06
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	8e-06
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	8e-06
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	1e-05
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	1e-05
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	1e-05
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	1e-05
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	1e-05
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	1e-05
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	1e-05
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	2e-05
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	2e-05
cd11936	62	cd11936, SH3_UBASH3B, Src homology 3 domain of Ubi	2e-05
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	2e-05
cd12012	62	cd12012, SH3_RIM-BP_2, Second Src homology 3 domai	2e-05
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	3e-05
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	3e-05
cd11865	55	cd11865, SH3_Nbp2-like, Src Homology 3 domain of S	3e-05
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	3e-05
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	4e-05
cd12014	62	cd12014, SH3_RIM-BP_1, First Src homology 3 domain	4e-05
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	5e-05
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	5e-05
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	6e-05
cd11910	75	cd11910, SH3_PI3K_p85alpha, Src Homology 3 domain	7e-05
cd11937	60	cd11937, SH3_UBASH3A, Src homology 3 domain of Ubi	7e-05
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	7e-05
cd11776	72	cd11776, SH3_PI3K_p85, Src Homology 3 domain of th	7e-05
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	8e-05
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	9e-05
cd11795	54	cd11795, SH3_DNMBP_N2, Second N-terminal Src homol	1e-04
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	1e-04
cd11994	59	cd11994, SH3_Intersectin2_4, Fourth Src homology 3	2e-04
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	2e-04
cd11896	55	cd11896, SH3_SNX33, Src Homology 3 domain of Sorti	2e-04
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	2e-04
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	2e-04
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	3e-04
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	3e-04
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	3e-04
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	3e-04
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	3e-04
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	3e-04
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	3e-04
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	4e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	4e-04
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	5e-04
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	6e-04
cd12065	54	cd12065, SH3_GRAF2, Src Homology 3 domain of GTPas	6e-04
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	8e-04
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	9e-04
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	9e-04
cd12062	62	cd12062, SH3_Caskin1, Src Homology 3 domain of CAS	0.001
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	0.001
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	0.001
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	0.002
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	0.002
cd11912	55	cd11912, SH3_Bzz1_1, First Src Homology 3 domain o	0.002
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	0.002
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	0.003
cd11897	55	cd11897, SH3_SNX18, Src Homology 3 domain of Sorti	0.003
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	0.003
cd11880	61	cd11880, SH3_Caskin, Src Homology 3 domain of CASK	0.004
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	0.004
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	0.004
cd11871	54	cd11871, SH3_p67phox_N, N-terminal (or first) Src	0.004

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score =  116 bits (293), Expect = 6e-36
 Identities = 42/55 (76%), Positives = 50/55 (90%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           R+R IVPYPP SE ELEL+ GD+++VHKKR+DGW+KGTLQRTG+TGLFP SFVES
Sbjct: 1   RYRVIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVES 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 77.0 bits (190), Expect = 4e-20
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R+R +  Y P +E ELELR GD++YV +K DDGW+ GT +RTG  G FP ++V 
Sbjct: 1   RYRALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYVA 54

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 68.7 bits (169), Expect = 5e-17
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 64  VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
              + R +  Y      EL  + GD+I V +K DDGW+KG L R G+ GLFP+++VE
Sbjct: 1   EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 67.9 bits (167), Expect = 1e-16
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
             R +  Y    + EL  + GD+I V +K DDGW++G L   GR GLFPA++
Sbjct: 1   YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNG-GREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 63.1 bits (154), Expect = 9e-15
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 69  RC--IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           RC  +  Y  N E EL L+ GD+I VH+K+DDGW+ G L   G+ G+FPA++VE
Sbjct: 1   RCKALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELN--GKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 62.7 bits (153), Expect = 1e-14
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASFVE 120
           R + PY P  E ELEL  GD IYV  +      DGW +GT   TG +GL P ++ E
Sbjct: 3   RVLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYTE 58

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 60.4 bits (147), Expect = 1e-13
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVE 120
           R +  Y   +E EL LR GD++ +  K   D GW+KG L   G+ G+FP +FVE
Sbjct: 3   RVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELN--GKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 59.7 bits (145), Expect = 2e-13
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG---RTGLFPASFVE 120
           + I P+   +E +L L VG L+ V KK   GW++G LQ  G   + G FPA++V+
Sbjct: 3   QVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 59.3 bits (144), Expect = 2e-13
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             +  Y  + + EL  + GD+IYV KK DDGWY+G L   G TGLFP ++VE
Sbjct: 3   VALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLN--GVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 58.1 bits (141), Expect = 8e-13
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 69  RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           RC V   Y P +E ELEL+VGD I V  + ++GW++G L   G+ G+FP++FV+
Sbjct: 1   RCKVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLN--GKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 56.6 bits (136), Expect = 4e-12
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           E+   I  Y  + E EL  + G +IYV KK DDGWY+G +   G TGLFP ++VES
Sbjct: 3   EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVES 56

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212726 cd11792, SH3_Fut8, Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)

 Score = 55.7 bits (135), Expect = 8e-12
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 71  IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           I P+ P +  E+ELRVGD+I V     DG+ KG  +RTG+TGL+P+  V+
Sbjct: 5   IYPHKPRNHDEIELRVGDIIGVAGNHWDGYSKGRNRRTGKTGLYPSYKVK 54

Fut8 catalyzes the alpha1,6-linkage of a fucose residue from a donor substrate to N-linked oligosaccharides on glycoproteins in a process called core fucosylation, which is crucial for growth factor receptor-mediated biological functions. Fut8-deficient mice show severe growth retardation, early death, and a pulmonary emphysema-like phenotype. Fut8 is also implicated to play roles in aging and cancer metastasis. It contains an N-terminal coiled-coil domain, a catalytic domain, and a C-terminal SH3 domain. The SH3 domain of Fut8 is located in the lumen and its role in glycosyl transfer is unclear. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 55.4 bits (133), Expect = 1e-11
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           +  I PY P  E ELELR G++  V ++  DGW+KGT   T + G+FP ++V
Sbjct: 2   YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYV 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 55.1 bits (133), Expect = 1e-11
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           PY P    ELELR G++  V +K  DGW+KGT  RTG++G+FP ++V+ 
Sbjct: 7   PYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYVQP 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 55.4 bits (133), Expect = 1e-11
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ++ +  Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP ++V+
Sbjct: 4   YQALYSYAPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 56

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 55.0 bits (133), Expect = 1e-11
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  Y    + E+    GD+I   ++ D+GW+ G     G+ GLFPA++VE
Sbjct: 3   KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVN-AKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 55.0 bits (132), Expect = 2e-11
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           +R+R +  Y    E E+  + GD I   ++ DDGW  GT++RTG TG+ PA++VE+
Sbjct: 3   KRYRAVYDYNAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEA 58

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 54.6 bits (131), Expect = 2e-11
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E F+ +  Y P +E ELELR GD+I V +K DDGW+ GT +RT   G FP ++V+
Sbjct: 5   EPFQALYNYMPRNEDELELREGDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVK 59

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 53.8 bits (129), Expect = 4e-11
 Identities = 23/47 (48%), Positives = 38/47 (80%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y P +E ELEL+VGD+I ++++ ++GW+ GTL   G++GLFP++FV+
Sbjct: 9   YVPQNEDELELKVGDIIDINEEVEEGWWSGTL--NGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 53.2 bits (129), Expect = 6e-11
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             R I  Y      EL L+ GD++ V  K D+GW++G   R GR GL P+S+VE
Sbjct: 1   YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGE--RGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 53.0 bits (128), Expect = 7e-11
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
            Y      EL  + GD+I V +K DDGW+KG L+  G+ GL P+
Sbjct: 5   DYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLK-GGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 53.0 bits (128), Expect = 7e-11
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
                 Y      EL L+VGD+I   KK ++GW++GTL   G+ G+FP +FV+
Sbjct: 2   VIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLN--GKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 52.7 bits (126), Expect = 1e-10
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           FR +  Y    + E+  + GD I   +  D+GW  GT+QRTG+TG+ PA++VE+
Sbjct: 4   FRAMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYVEA 57

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 52.7 bits (126), Expect = 1e-10
 Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 69  RCIVP--YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           RC V   Y P +E ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F++
Sbjct: 1   RCQVAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNFIK 52

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 52.7 bits (126), Expect = 1e-10
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +R +  Y    E E+  R GD I   +  D+GW  GT+QRTGRTG+ PA+++E
Sbjct: 3   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYIE 55

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 52.3 bits (126), Expect = 2e-10
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R + P+   S  EL L+ GD+IY+ ++ D  WY+G  +  GR G+FPAS+VE
Sbjct: 3   RALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEG--EHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 52.3 bits (126), Expect = 2e-10
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 70  CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           C+  Y      EL L  GD++ V +K  DGWY+G   R G  G FP+S+ E
Sbjct: 4   CVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 52.3 bits (126), Expect = 2e-10
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 76  PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           P  E E+EL +GD +YV ++ DD W +GT  RTG+ G+FPA++V
Sbjct: 10  PRHEDEIELDIGDPVYVEQEADDLWCEGTNLRTGQRGIFPAAYV 53

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 52.3 bits (125), Expect = 2e-10
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           R  ++ +  Y P +E ELELR GD + V ++ DDGW+ G  +RT + G FP ++V
Sbjct: 1   RTPYKAVYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 51.7 bits (124), Expect = 3e-10
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 74  YPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVE 120
           Y P +  EL L+ GD+I V  K   D+GW++G L   GR G FP +FV 
Sbjct: 8   YNPVAPDELALKKGDVIEVISKETEDEGWWEGELN--GRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 51.3 bits (123), Expect = 3e-10
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 69  RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
            C+    Y  +   ELEL+ G+ + V  K  +GW +G    TGR G+FP+++V
Sbjct: 1   MCVALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGRVGIFPSNYV 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 51.2 bits (123), Expect = 4e-10
 Identities = 22/54 (40%), Positives = 36/54 (66%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R+R +  Y    + E+  + GD+I   +  DDGW +GT+QRTG++G+ PA++VE
Sbjct: 1   RYRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVE 54

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 51.6 bits (123), Expect = 4e-10
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 71  IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           I  Y  + + EL    G +IYV KK DDGWY+G       TGLFP ++VES
Sbjct: 5   IYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGV--TGLFPGNYVES 53

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 51.1 bits (123), Expect = 4e-10
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           FR +  Y      EL    GDL+Y+  K D  W+K T    G+TGL P+++VE 
Sbjct: 2   FRALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCG--GKTGLIPSNYVEE 53

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 50.4 bits (120), Expect = 9e-10
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           Y P    ELELR G++  V +K  DGW+KGT  RTG +G+FP ++V
Sbjct: 9   YKPQKNDELELRKGEMYRVIEKCQDGWFKGTSLRTGVSGVFPGNYV 54

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 49.9 bits (119), Expect = 1e-09
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           Y    E EL + VGD+I   KK D GW++G ++  GR GLFP +FV
Sbjct: 8   YKAQHEDELTITVGDIITKIKKDDGGWWEGEIK--GRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 49.7 bits (119), Expect = 1e-09
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           EL+LR GD++ +    D GW++G L   GR G+FP  FV
Sbjct: 15  ELDLREGDVVTITGILDKGWFRGELN--GRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212722 cd11788, SH3_RasGAP, Src Homology 3 domain of Ras GTPase-Activating Protein 1

 Score = 49.7 bits (119), Expect = 2e-09
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 65  RERFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R R R I+PY   P+++ EL  + GD+  VH + +DGW   T  RTG +GL     VE
Sbjct: 1   RRRVRAILPYNKVPDTD-ELSFQKGDIFVVHNELEDGWLWVTSLRTGESGLVFRDLVE 57

RasGAP, also called Ras p21 protein activator, RASA1, or p120RasGAP, is part of the GAP1 family of GTPase-activating proteins. It is a 120kD cytosolic protein containing an SH3 domain flanked by two SH2 domains at the N-terminal end, a pleckstrin homology (PH) domain, a calcium dependent phospholipid binding domain (CaLB/C2), and a C-terminal catalytic GAP domain. It stimulates the GTPase activity of normal RAS p21. It acts as a positive effector of Ras in tumor cells. It also functions as a regulator downstream of tyrosine receptors such as those of PDGF, EGF, ephrin, and insulin, among others. The SH3 domain of RasGAP is unable to bind proline-rich sequences but have been shown to interact with protein partners such as the G3BP protein, Aurora kinases, and the Calpain small subunit 1. The RasGAP SH3 domain is necessary for the downstream signaling of Ras and it also influences Rho-mediated cytoskeletal reorganization. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 48.8 bits (116), Expect = 4e-09
 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%)

Query: 78  SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           S  EL L+ GD++Y+HK+ D  W +G  +  GR G+FPA++VE
Sbjct: 13  SPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 48.4 bits (116), Expect = 5e-09
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y    E EL LR GD + V +K  DGW++G     G+ G FP+++V 
Sbjct: 8   YEAQREDELSLRKGDRVLVLEKSSDGWWRGECN--GQVGWFPSNYVT 52

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 48.0 bits (115), Expect = 6e-09
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 76  PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P +E EL  + GD+I +  + D+ WY+G +   G++G FP ++VE
Sbjct: 11  PENEGELGFKEGDIITLTNQIDENWYEGMVN--GQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 47.8 bits (114), Expect = 8e-09
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + + +  Y      EL    GD+I + K+   GW+ G L+  G+ GLFP ++VE
Sbjct: 1   QCKALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLR--GKEGLFPGNYVE 52

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 47.5 bits (113), Expect = 1e-08
 Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 77  NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SFV+
Sbjct: 11  NSKLELNFKAGDVIFLLSRVNKDWLEGTVR--GATGIFPLSFVK 52

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 47.7 bits (113), Expect = 1e-08
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)

Query: 64  VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           V+ RF     +   +E EL +  GD+IYV +  + GW++GTL   G+TG FP+++V   
Sbjct: 4   VKARFN----FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GKTGWFPSNYVREI 56

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 47.3 bits (113), Expect = 1e-08
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 63  TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            VR +F     +   +E EL    GD+I V +  + GW++GTL   G+TG FP+++V+
Sbjct: 1   LVRAKF----NFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLN--GKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 47.2 bits (113), Expect = 1e-08
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 76  PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P    ELE R GD+I V    D  W+KG L+  GR G+FPA++V+
Sbjct: 10  PQEPGELEFRRGDIITVLDSSDPDWWKGELR--GRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 46.9 bits (112), Expect = 2e-08
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 74  YPPNSEYELEL--RVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y   +E E EL    G +I  V    + GW +GTL   GRTGL P ++VE
Sbjct: 6   YACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLN--GRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 46.6 bits (111), Expect = 2e-08
 Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASF 118
              I  +   SE EL L+ GD I +  + D    DGWY G   RTG TGLFP  F
Sbjct: 2   LIVIHDFNARSEDELTLKPGDKIEL-IEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 46.2 bits (110), Expect = 4e-08
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 76  PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            ++  EL  R GD+I + ++ D+ WY+G +   GR G+FP S+V+
Sbjct: 10  ADTGVELSFRKGDVITLTRRVDENWYEGRI--GGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212875 cd11942, SH3_JIP2, Src homology 3 domain of JNK-interacting protein 2

 Score = 45.3 bits (107), Expect = 7e-08
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
           R +  + P  E ELEL V D + V  + DD WY+G   RTG  G+FPA +
Sbjct: 3   RAVFRFIPRHEDELELDVDDPLLVEAEEDDYWYRGYNMRTGERGIFPAFY 52

JNK-interacting protein 2 (JIP2) is also called Mitogen-activated protein kinase 8-interacting protein 2 (MAPK8IP2) or Islet-brain-2 (IB2). It is widely expressed in the brain, where it forms complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. JIP2 is enriched in postsynaptic densities and may play a role in motor and cognitive function. In addition to a JNK binding domain, JIP2 also contains SH3 and Phosphotyrosine-binding (PTB) domains. The SH3 domain of the related protein JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 79  EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E EL  R G+ I + +K ++ WY+G +  TGR G+FPAS+V+
Sbjct: 14  EVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 2/40 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           EL L+ GD++Y++K+ D  WY+G  +  GR G+FP S++E
Sbjct: 16  ELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 45.0 bits (107), Expect = 1e-07
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 69  RCIVPYPP-NSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFVE 120
           R +  + P N E EL L+ GD++ V  K D       W+KG   R GR G FP+++VE
Sbjct: 3   RALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRT-RDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212805 cd11872, SH3_DOCK_AB, Src Homology 3 domain of Class A and B Dedicator of Cytokinesis proteins

 Score = 44.9 bits (107), Expect = 1e-07
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASFV 119
           +  + E++L L+VGD + + ++  +GWY+G   R     G+FP S+V
Sbjct: 8   FQGDGEHQLSLQVGDTVQILEE-CEGWYRGFSLRNKSLKGIFPKSYV 53

DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. They are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1, 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. This subfamily includes only Class A and B DOCKs, which also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus. Class A/B DOCKs are mostly specific GEFs for Rac, except Dock4 which activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. The SH3 domain of class A/B DOCKs have been shown to bind Elmo, a scaffold protein that promotes GEF activity of DOCKs by releasing DHR-2 autoinhibition by the intramolecular SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 44.7 bits (106), Expect = 1e-07
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  Y      +L  + GD+I + K+ D+ WY G     G+ G FPAS+V+
Sbjct: 3   KALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECN--GKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 44.6 bits (106), Expect = 1e-07
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL---QRTGRTGLFPASF 118
             +  + P S+ +L  + GD+IYV  K   GW+ G +       + G FP+++
Sbjct: 3   VALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 44.7 bits (105), Expect = 1e-07
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 64  VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           VR +F     +   +E EL    GD+I+V +  + GW++GT    GRTG FP+++V
Sbjct: 2   VRAKFN----FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 44.0 bits (104), Expect = 2e-07
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           R I  + P+   EL L  GD+I V K  D+ W  GT  + G TG FP+SFV
Sbjct: 3   RAIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGT--KEGVTGQFPSSFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 44.1 bits (104), Expect = 3e-07
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  ++  EL LR GD + + K+ D  WY+G +  T R G+FP S+VE
Sbjct: 9   FNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYVE 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 43.9 bits (104), Expect = 3e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 73  PYPPNSEYELELRVGDLIYV-----HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            Y      EL    GD+I V      +++D+GW  G  + TG  G+FP +F E
Sbjct: 10  DYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFPENFTE 62

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 43.6 bits (103), Expect = 4e-07
 Identities = 20/51 (39%), Positives = 24/51 (47%)

Query: 70  CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           CI  Y      EL L   D+I V ++  DGW +G     G  G FP S VE
Sbjct: 4   CIRSYKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 43.2 bits (102), Expect = 5e-07
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           EL  + G++I V    D  W+KG+  R    GLFPA+FV +
Sbjct: 16  ELTFKAGEIITVLDDSDPNWWKGSNHR--GEGLFPANFVTA 54

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 43.3 bits (102), Expect = 5e-07
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVE 120
           + + PY   +E EL ++ GD++ +  K   D GW++G L   GR G+FP +FV+
Sbjct: 3   KVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGEL--NGRRGVFPDNFVK 54

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 43.1 bits (101), Expect = 5e-07
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R +  +   +  EL  + GD +Y+ +K D  WY+G  +  GR G+FP S+VE
Sbjct: 4   RAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVE 53

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 43.2 bits (102), Expect = 6e-07
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 74  YPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFVES 121
           Y  ++E EL LR GD + V  K      D+GW+ G +    R G+FP+++V S
Sbjct: 8   YEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKIN--DRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 42.8 bits (101), Expect = 8e-07
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 71  IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + PY   +E EL  + GD+I V  K D  W++G L   G+TGLFP+++VE
Sbjct: 5   LFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELN--GQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 42.5 bits (100), Expect = 9e-07
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 69  RCIVP--YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R +V   Y  + + E+EL  G+++   +  D+ W+ GT  + G +GLFP+++VE
Sbjct: 1   RAVVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSK-GESGLFPSNYVE 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFVE 120
           ++R +  +   +  E+  + GD+I V + +    GW  G L+  G+TG FPA++VE
Sbjct: 1   KYRALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELK--GKTGWFPANYVE 54

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 42.1 bits (99), Expect = 1e-06
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
           +   +E +L  + GD I V +  D  W +G L   GR G+FP +F
Sbjct: 8   FTGETEEDLSFQRGDRILVTEHLDAEWSRGRLN--GREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 42.0 bits (99), Expect = 1e-06
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
           EL+  VGD I +    +DGW +G L+  GR G+FP  F
Sbjct: 15  ELDFEVGDRIRIIATLEDGWLEGELK--GRRGIFPHRF 50

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFV 119
           +E  + +  Y   +E EL+ + G++I +  K   + GW+KG L   G+ G+FP +FV
Sbjct: 1   KEYCKALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELN--GKEGVFPDNFV 55

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 42.1 bits (99), Expect = 1e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 74  YPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y    E EL +RVG++I  V K  ++GW +G L   GR G+FP +FV+
Sbjct: 8   YDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELN--GRRGMFPDNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 76  PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVES 121
            ++E EL  R GD+I V  + D DG+Y G L   G+ GL P++F+E 
Sbjct: 17  VDAEVELSFRAGDIITVFGEMDEDGFYYGELN--GQRGLVPSNFLEE 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 74  YPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFV 119
           Y  + E EL LR GD++ V  +      DDGW+ G ++   R G+FPA++V
Sbjct: 8   YEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRH--RLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212785 cd11851, SH3_RIM-BP, Src homology 3 domains of Rab3-interacting molecules (RIMs) binding proteins

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 76  PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVES 121
            + E EL    GD++ V+   D DG+Y G L+  GR GL P++FV+ 
Sbjct: 17  DDPEEELSFHAGDVVRVYGPMDEDGFYYGELEG-GRKGLVPSNFVQE 62

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120
             R +  Y      EL  + GD++   ++ D+ GW KG L   GR GL+PA++VE
Sbjct: 1   PVRALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLD--GRVGLYPANYVE 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212876 cd11943, SH3_JIP1, Src homology 3 domain of JNK-interacting protein 1

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
           R +  + P    ELEL V D + V  + +D WY+    RTG  G+FPA +
Sbjct: 3   RAVFRFVPRHPDELELEVDDPLLVEVQAEDYWYEAYNMRTGARGIFPAYY 52

JNK-interacting protein 1 (JIP1) is also called Islet-brain 1 (IB1) or Mitogen-activated protein kinase 8-interacting protein 1 (MAPK8IP1). It is highly expressed in neurons, where it functions as an adaptor linking motor to cargo during axonal transport. It also affects microtubule dynamics in neurons. JIP1 is also found in pancreatic beta-cells, where it is involved in regulating insulin secretion. In addition to a JNK binding domain, JIP1 also contains SH3 and Phosphotyrosine-binding (PTB) domains. Its SH3 domain homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 41.5 bits (97), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R R +  Y      EL  + G+ L+ + ++ + GW KG L  +GR GL+PA++VE
Sbjct: 3   RVRALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLL-SGRIGLYPANYVE 56

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 41.3 bits (97), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           + +  +   +E +L    GDLI V    D  W+ G L+R G  G+FP++FV
Sbjct: 3   KAVYSWAGETEGDLGFLEGDLIEVLSIGDGSWWSGKLRRNGAEGIFPSNFV 53

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|212983 cd12050, SH3_DOCK2_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis protein 2

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFV 119
           +L L++GD++++ +  +D WYKG L R     G+FP SF+
Sbjct: 15  QLSLQIGDVVHIQETCED-WYKGYLVRHKDLQGIFPKSFI 53

Dock2 is a hematopoietic cell-specific, class A DOCK and is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. It plays an important role in lymphocyte migration and activation, T-cell differentiation, neutrophil chemotaxis, and type I interferon induction. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock2 binds to DHR-2 in an autoinhibitory manner; binding of the scaffold protein Elmo to the SH3 domain of Dock2 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +P     +L L  G+++Y+ +K D  WY+G  +    TG+FPA+ V+
Sbjct: 8   FPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCK--NTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R R +  Y    + E+    GD+I   ++ D+GW++GT    G  GLFPA++VE
Sbjct: 1   RARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGP-DGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212984 cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis proteins 1 and 5

 Score = 41.3 bits (97), Expect = 3e-06
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 71  IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPASFV 119
           I  Y      EL L++GD +++ +  + GWY+G TL++  + G+FPAS++
Sbjct: 5   IYNYDARGPDELSLQIGDTVHILETYE-GWYRGYTLRKKSKKGIFPASYI 53

Dock1, also called Dock180, and Dock5 are class A DOCKs and are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock1 binds to DHR-2 in an autoinhibitory manner; binding of Elmo to the SH3 domain of Dock1 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 41.0 bits (96), Expect = 3e-06
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           EL L+  D++ V +   DGWY G   R G  G FP+S  +
Sbjct: 15  ELSLQQADVVLVLQTESDGWYYGERLRDGERGWFPSSCAK 54

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 40.7 bits (95), Expect = 4e-06
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 81  ELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASFVE 120
           EL L+ GD++ ++ KK   GW++G +   GR G FP+++VE
Sbjct: 15  ELSLKEGDVVKIYNKKGQQGWWRGEIN--GRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 40.8 bits (96), Expect = 4e-06
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           R + + P+    E +L    GD+I  +  +  DGW+ G  +R+GR G FP ++ E 
Sbjct: 2   RVKALYPHAAGGETQLSFEEGDVITLLGPEPRDGWHYGENERSGRRGWFPIAYTEP 57

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 40.8 bits (96), Expect = 5e-06
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASF 118
           EL    G++I V  + DD W++G ++    R G+FP SF
Sbjct: 15  ELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 40.7 bits (95), Expect = 5e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 81  ELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           EL L+ GD+I + +KK   GW++G +   GR G FPA++VE
Sbjct: 15  ELSLKEGDIIKILNKKGQQGWWRGEIY--GRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 40.6 bits (95), Expect = 5e-06
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           + P    +LE+R GD I +    ++ W+KG ++   R G FPA+FV
Sbjct: 8   FKPQENEDLEMRPGDKITLLDDSNEDWWKGKIED--RVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 40.5 bits (95), Expect = 6e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASFVE 120
           R +  Y   S+ EL    G +I + +K     DDGW++G     GR G+FP+  VE
Sbjct: 3   RALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFN--GRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 40.3 bits (94), Expect = 6e-06
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +R I  Y  +S+ E+ L+ GD++ V +K ++GW+    Q   + G  PAS++E
Sbjct: 2   YRAIADYEKSSKSEMALKTGDVVEVVEKSENGWW--FCQLKAKRGWVPASYLE 52

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 40.8 bits (95), Expect = 6e-06
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 81  ELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVE 120
           EL LR GD++ ++ +   D GW+KG  +  GR G FP+++VE
Sbjct: 16  ELSLREGDVVRIYSRIGGDQGWWKG--ETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 40.1 bits (94), Expect = 7e-06
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           PY  N   +L    GD+I V KK  + W+ GT+    RTG+FP+++V
Sbjct: 7   PYESNEPGDLTFNAGDVILVTKKDGE-WWTGTIG--DRTGIFPSNYV 50

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 40.3 bits (94), Expect = 7e-06
 Identities = 19/52 (36%), Positives = 26/52 (50%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +C+ PY      EL L + D++ +  K DDGW  G        G FP+S VE
Sbjct: 3   QCVHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVVE 54

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 40.0 bits (94), Expect = 8e-06
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ++  +  Y    + EL +  GD++ V +K +DGW+  T++R G+ GL P +++E
Sbjct: 1   KYSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWW--TVERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 40.2 bits (94), Expect = 8e-06
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y    + E+     + I   +  D+GW+KGT    G  GLFPA++VE
Sbjct: 9   YQGEGDDEISFDPQETITDIEMVDEGWWKGTCH--GHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  + P  + EL  R GD I V    D  W+KG     G+TG+FP ++V 
Sbjct: 3   QALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACH--GQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           R R +  Y    + EL  + GD L  +  + + GW KG L  +G+ GL+PA++VE 
Sbjct: 2   RVRALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLD-SGQVGLYPANYVEP 56

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y    + E+     D+I   +  D+GW++G  +  G+ GLFPA++VE
Sbjct: 8   YQAADDDEISFDPDDIITNIEMIDEGWWRGVCR--GKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y  N+E EL    G LI V  K D  W++G +   G TGLFP+++V+
Sbjct: 9   YTANNEDELSFSKGQLINVLNKDDPDWWQGEIN--GVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 68  FRCIVPYPPNSEYE--LELRVGDLIYVHKKRDDGWYKGTLQR---TGRTGLFPASFVE 120
           F+    YP  S++E  L   VG LI V ++ D  WY G         + G+FP +FVE
Sbjct: 2   FKVKALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFVE 59

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 29/44 (65%)

Query: 77  NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +++ E+  R G+ I + ++ D+ WY+G +  T R G+FP ++V+
Sbjct: 12  DTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 55

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 81  ELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFV 119
           +L  + GD I V  + D    W++G L+  GR G+FPA++V
Sbjct: 15  DLSFQAGDRITVLTRTDSQFDWWEGRLR--GRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFVE 120
           + I  Y      +L L  G LI + KK   GW++G LQ  G+    G FPA++V+
Sbjct: 7   QVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVK 61

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R +  +    + EL    GD+I V    +  W+KG L   G+ GLFPA++V 
Sbjct: 3   RALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLH--GKLGLFPANYVA 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212869 cd11936, SH3_UBASH3B, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein B

 Score = 39.3 bits (91), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYV----HKKRDDGWYKGTLQRTGRTGLFPASFV 119
           E  + I PY P ++ ELEL  GD I++         +GW  GT   TG +GL P +++
Sbjct: 2   ETLQVIYPYTPQNDDELELVPGDYIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 59

UBASH3B, also called Suppressor of T cell receptor Signaling (STS)-1 or T cell Ubiquitin LigAnd (TULA)-2 is an active phosphatase that is expressed ubiquitously. The phosphatase activity of UBASH3B is essential for its roles in the suppression of TCR signaling and the regulation of EGFR. It also interacts with Syk and functions as a negative regulator of platelet glycoprotein VI signaling. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 38.8 bits (91), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
           + R +  +      EL LR G+++ + ++   DGW +G   R G  GLFP+S+VE
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSR-GEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212945 cd12012, SH3_RIM-BP_2, Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
           P P  +E EL  + G LI V+  +D DG+Y G  +  GR GL P + V 
Sbjct: 15  PNPDAAEEELPFKEGQLIKVYGDKDADGFYLG--EINGRRGLVPCNMVS 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 81  ELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVE 120
           EL L  GD++ ++ K   +GW++G  +  GR G FP+++VE
Sbjct: 16  ELSLLKGDVVKIYTKMSTNGWWRG--EVNGRVGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTG-RTGLFPASFVE 120
           +      +L  + GD+I + KK D  + W+ G   R G R G+FPA++VE
Sbjct: 8   FAGEQPGDLAFQKGDIITILKKSDSQNDWWTG---RIGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212799 cd11865, SH3_Nbp2-like, Src Homology 3 domain of Saccharomyces cerevisiae Nap1-binding protein 2 and similar fungal proteins

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + P  + EL    G ++++  K   GW     +  G+TGL P  FV 
Sbjct: 8   FEPEHDNELGFAEGQILFILYKHGQGWLIAEDESGGKTGLVPEEFVS 54

This subfamily includes Saccharomyces cerevisiae Nbp2 (Nucleosome assembly protein 1 (Nap1)-binding protein 2), Schizosaccharomyces pombe Skb5, and similar proteins. Nbp2 interacts with Nap1, which is essential for maintaining proper nucleosome structures in transcription and replication. It is also the binding partner of the yeast type II protein phosphatase Ptc1p and serves as a scaffolding protein that brings seven kinases in close contact to Ptc1p. Nbp2 plays a role many cell processes including organelle inheritance, mating hormone response, cell wall stress, mitotic cell growth at elevated temperatures, and high osmolarity. Skb5 interacts with the p21-activated kinase (PAK) homolog Shk1, which is critical for fission yeast cell viability. Skb5 activates Shk1 and plays a role in regulating cell morphology and growth under hypertonic conditions. Nbp2 and Skb5 contain an SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +LE + GD+I V  K ++ W +G  Q  G+ G+FP++FVE
Sbjct: 15  DLEFQKGDVILVLSKVNEDWLEG--QCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  Y      +L+   GD+I + +K D+ WY G L   G  G  PAS+++
Sbjct: 4   KALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELN--GCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212947 cd12014, SH3_RIM-BP_1, First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 38.5 bits (90), Expect = 4e-05
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 77  NSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
           N E EL L  GD +YV+   D DG+Y+G L   GR GL P++FVE
Sbjct: 18  NPEAELPLNAGDYVYVYGDMDEDGFYEGELL-DGRRGLVPSNFVE 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 38.0 bits (88), Expect = 5e-05
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           Y  N + +L  + GD+I V KK  D W+ GT+    +TG+FP+++V
Sbjct: 8   YESNEQGDLTFQQGDVILVTKKDGD-WWTGTV--GDKTGVFPSNYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 38.0 bits (89), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  I  Y    + E+ L+ G+++ V +K D GW+   +++  + G  PAS++E
Sbjct: 2   YVAIADYEAQGDDEISLQEGEVVEVLEKNDSGWW--YVRKGDKEGWVPASYLE 52

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 37.9 bits (88), Expect = 6e-05
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           Y  N   EL +  GD+I V  K +D W+ G+L   G+ G FPA++V
Sbjct: 8   YTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVN-GQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212843 cd11910, SH3_PI3K_p85alpha, Src Homology 3 domain of the p85alpha regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 38.3 bits (89), Expect = 7e-05
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHK-------------KRDD--GWYKGTLQRTGRT 111
           ++R +  Y    E +++L +GD++ V+K              R +  GW  G  + TG  
Sbjct: 3   QYRALYDYKKEREEDIDLHLGDILTVNKGSLLALGFSEGQEARPEEIGWLNGYNETTGER 62

Query: 112 GLFPASFVE 120
           G FP ++VE
Sbjct: 63  GDFPGTYVE 71

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. In addition to regulating the p110 subunit, p85alpha interacts with activated FGFR3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 75

>gnl|CDD|212870 cd11937, SH3_UBASH3A, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein A

 Score = 37.7 bits (87), Expect = 7e-05
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD----GWYKGTLQRTGRTGLFPASFVE 120
           +  R +  Y P +  EL L  GD I+V   +      GW  G   RTG  G  P ++ E
Sbjct: 1   QTLRALFQYKPQNIDELMLSPGDYIFVDPTQQSEASEGWVIGISHRTGCRGFLPENYTE 59

UBASH3A is also called Cbl-Interacting Protein 4 (CLIP4), T cell Ubiquitin LigAnd (TULA), or T cell receptor Signaling (STS)-2. It is only found in lymphoid cells and exhibits weak phosphatase activity. UBASH3A facilitates T cell-induced apoptosis through interaction with the apoptosis-inducing factor AIF. It is involved in regulating the level of phosphorylation of the zeta-associated protein (ZAP)-70 tyrosine kinase. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 37.5 bits (87), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 69  RCIVPYPPNSEYE---LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
            C   Y    E     L    G+LI V +  D GW++G  ++ G  G FPAS+V
Sbjct: 1   LCRTLYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEG--EKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212710 cd11776, SH3_PI3K_p85, Src Homology 3 domain of the p85 regulatory subunit of Class IA Phosphatidylinositol 3-kinases

 Score = 37.9 bits (88), Expect = 7e-05
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHK---------------KRDDGWYKGTLQRTGRT 111
           ++R +  Y    + ++ L+ GD++ V                  + +GW +G  +RTG  
Sbjct: 2   QYRALYDYEKERDEDIILKTGDVLVVENPELLALGVPDGKETVPKPEGWLEGKNERTGER 61

Query: 112 GLFPASFVE 120
           G FP ++VE
Sbjct: 62  GDFPGTYVE 70

Class I PI3Ks convert PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. They are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class IA PI3Ks associate with the p85 regulatory subunit family, which contains SH3, RhoGAP, and SH2 domains. The p85 subunits recruit the PI3K p110 catalytic subunit to the membrane, where p110 phosphorylates inositol lipids. Vertebrates harbor two p85 isoforms, called alpha and beta. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 72

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 37.4 bits (87), Expect = 8e-05
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 69  RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           RC+    +    E EL    GD+I + +   + W KG L   G+ G+FP +FV
Sbjct: 1   RCVARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGELN--GKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 37.3 bits (87), Expect = 9e-05
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 77  NSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            S+ EL ++ GD++Y +  K+   W+      TG+ G+ PAS++E
Sbjct: 12  QSDDELTVKEGDVVYILDDKKSKDWWMVENVSTGKEGVVPASYIE 56

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212729 cd11795, SH3_DNMBP_N2, Second N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             CI  +       L L+ GDL+ +    D GW +G     G +G FP+S V+
Sbjct: 2   VVCIEAFTSQEPGHLNLQRGDLVELTGTTDSGWLQGRS-CWGSSGFFPSSCVQ 53

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           + R +  +    + EL  + G++I V    D  W+KG   R    GLFP++FV +
Sbjct: 3   KVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG--VGLFPSNFVTT 55

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212927 cd11994, SH3_Intersectin2_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-2

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT---GLFPASFVE 120
           Y  +   +L L  G LI + KK   GW+ G LQ  G+    G FPAS V+
Sbjct: 8   YVASGVEQLSLSPGQLILILKKNSSGWWLGELQARGKKRQKGWFPASHVK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R + +  Y  ++  +L+   GD+I + ++ D+ WY G +     +G+FPAS VE
Sbjct: 2   RAKALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGEINGV--SGIFPASSVE 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212829 cd11896, SH3_SNX33, Src Homology 3 domain of Sorting Nexin 33

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 88  DLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +L+   +   DGW +G   R G TGLFPAS+VE
Sbjct: 23  ELVIFSENSLDGWLQGQNSR-GETGLFPASYVE 54

SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX33 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           EL  + GD+I V    D  W+ G        G FPASFV
Sbjct: 15  ELGFKAGDVIEVLDMSDKDWWWG--SIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 76  PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P    +L L+ GD + V    ++ W+KG      R G FPA+FV+
Sbjct: 10  PQENNDLPLQPGDRVMVVDDSNEDWWKGKSG--DRVGFFPANFVQ 52

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           Y   SE EL  + GD + ++++  D W++G L   G+ GL P  ++
Sbjct: 8   YTGRSERELSFKKGDSLTLYRQVSDDWWRGQLN--GQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R R +  Y      EL  + G+ L+ V  + + GW KG +   G  GL+PA++VE
Sbjct: 3   RVRAVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKG-VTDGGAVGLYPANYVE 56

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 118
           Y    + E+ +RVGD I V +  D  GW  G +   G  GLFP S+
Sbjct: 8   YEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEIN--GVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +L  R GD I V  + ++ W +G     GR G+FP  FV 
Sbjct: 15  DLGFREGDTIDVLSEVNEAWLEG--HSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y   ++ EL    G +I V  K D  W+KG L   G+ GLFP+++V+
Sbjct: 9   YTAQNDDELAFSKGQIINVLNKEDPDWWKGEL--NGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           +      +L  R GD+I V    D  W++G +  +GR G FP ++V
Sbjct: 8   FSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRI--SGRVGFFPRNYV 51

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 35.7 bits (82), Expect = 3e-04
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVE 120
           +R + P+   S  E+ ++ GD++ V + +  + GW  G L+  G+TG FPA++ E
Sbjct: 2   YRALYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELK--GKTGWFPANYAE 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
           + R +  +   +E EL  + GD+I   +  D+ W  G L+  G++G+FP +F
Sbjct: 1   KARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELR--GKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
            F  +  Y P  E E++L  G+ + V    + G+++GT++  GRTG FPA  V
Sbjct: 2   TFIAVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVK--GRTGWFPADCV 52

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           + R I  +    + EL  + GD+I +    D  W+KG   +   TGLFP++FV +
Sbjct: 2   KVRAIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQG--TGLFPSNFVTA 54

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  Y    + EL     D I   +  DD W+ G     G  GLFP+++VE
Sbjct: 3   KALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECH--GSRGLFPSNYVE 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212998 cd12065, SH3_GRAF2, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 2

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 74  YPPNSEY--ELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           YP  +E+  EL   VG +   V   R+ GW +GTL   G+ GL P ++VE
Sbjct: 6   YPCEAEHSSELSFEVGAIFEDVTLSREPGWLEGTLN--GKRGLIPENYVE 53

GRAF2, also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA. It regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle, and is involved in alpha-catenin recruitment at cell-cell junctions. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 35.1 bits (81), Expect = 8e-04
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-----TGRTGLFPASF 118
           Y P +E EL ++  D++Y+ +K DD W+K  L+          GL PA++
Sbjct: 8   YEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 34.6 bits (80), Expect = 9e-04
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +  +  +    E +L  + G+++ +  KR DGW+       G  GL P ++++
Sbjct: 1   LYEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAE-NSKGNRGLVPKTYLK 53

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 35.0 bits (80), Expect = 9e-04
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           Y    E EL L  G  + V +K  DGW++G+    G+ G FP+++V
Sbjct: 10  YTAEREDELSLVKGTKVIVMEKCSDGWWRGSYN--GQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212995 cd12062, SH3_Caskin1, Src Homology 3 domain of CASK interacting protein 1

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 82  LELRVGDLIYVHKKRDDGWYKGTLQ--RTG--RTGLFPASFVES 121
           L ++ GD+I V ++  DG +KG +   RTG  R G FP+S VE+
Sbjct: 18  LNIKAGDVITVLEQHPDGRWKGCIHDNRTGNDRVGYFPSSLVEA 61

Caskin1 is a multidomain adaptor protein that contains six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. It is expressed at high levels in the brain and is localized in presynaptic regions. It binds to the multidomain scaffolding protein CASK through the CaMK domain in competition with Munc-interacting protein 1 (Mint1). CASK participates in one of two evolutionarily conserved tripartite complexes containing either Mint1 and Velis or Caskin1 and Velis. Caskin1 may play a role in infantile myoclonic epilepsy. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 62

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 34.6 bits (79), Expect = 0.001
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E++  I PY    + E+ L  G ++ V +K  +GW+K  ++  G+ G  PAS+++
Sbjct: 1   EKYTVIYPYTARDQDEINLEKGAVVEVIQKNLEGWWK--IRYQGKEGWAPASYLK 53

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 87  GDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFVE 120
           GD+I +  K    D GW  GTL   GR+G FP  +V+
Sbjct: 21  GDVIKLLPKEGPLDPGWLFGTLD--GRSGAFPKEYVQ 55

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           P+    E  L    GD+I V ++++  W+ G L   G  G FP S+V
Sbjct: 7   PWRAKKENHLSFAKGDIITVLEQQEM-WWFGEL-EGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 74  YPPNSEYELELRVGD-LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +   SE +L  + GD L  V   +D  WYK    + GR G+ PA++V+
Sbjct: 10  FNGASEEDLPFKKGDILTIVAVTKDPNWYKAK-NKDGREGMIPANYVQ 56

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212845 cd11912, SH3_Bzz1_1, First Src Homology 3 domain of Bzz1 and similar domains

 Score = 33.7 bits (78), Expect = 0.002
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDD--GWYKGTLQRTGRTGLFPASFVE 120
           + +  Y  + + E+ +  G+ + V  + DD  GW K     +G  GL P S++E
Sbjct: 3   KVLYDYTASGDDEVSISEGEEVTV-LEPDDGSGWTKVRNG-SGEEGLVPTSYIE 54

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the first C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R + ++ +  + + EL  R  D+I +  ++D+  + G L   G  G FPA FVE
Sbjct: 1   RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRGWFPAKFVE 52

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y      EL      +I   +K D GW++G      +   FPA++VE
Sbjct: 8   YRAQRPDELSFCKHAIITNVEKEDGGWWRGDYG-GKKQKWFPANYVE 53

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212830 cd11897, SH3_SNX18, Src Homology 3 domain of Sorting nexin 18

 Score = 33.4 bits (76), Expect = 0.003
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
           R R +  +   +  E+ LR  +++ +  ++D +GW +G   R G  GLFPAS+VE
Sbjct: 1   RARALYDFRSENPGEISLREHEVLSLCSEQDIEGWLEGVNSR-GDRGLFPASYVE 54

SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. It binds FIP5 and is required for apical lumen formation. It may also play a role in axonal elongation. SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX18 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 76  PNSEYELELRVGDLIYVHKKRDD--GWYKGTLQRTGRTGLFPASFV 119
            N   EL  + GDLIY+  K  D  GW+ G L   G+ GL P  ++
Sbjct: 10  GNEPDELSFKRGDLIYIISKEYDSFGWWVGELN--GKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212813 cd11880, SH3_Caskin, Src Homology 3 domain of CASK interacting protein

 Score = 33.3 bits (76), Expect = 0.004
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 82  LELRVGDLIYVHKKRDDGWYKGTLQ--RTG--RTGLFPASFVE 120
           L +R GD+I V ++  DG +KG +   +TG  R G FP S VE
Sbjct: 18  LNVRAGDIITVLEQHPDGRWKGHIHDNQTGNDRVGYFPPSLVE 60

Caskin proteins are multidomain adaptor proteins that contain six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. There are two Caskin proteins called Caskin1 and Caskin2. Caskin1 binds to the multidomain scaffolding protein CASK through the CaM domain in competition with Munc-interacting protein 1 (Mint1). CASK participates in one of two evolutionarily conserved tripartite complexes containing either Mint1 and Velis or Caskin1 and Velis. Caskin1 may play a role in infantile myoclonic epilepsy. There is not much known about Caskin2; despite sharing a domain architecture with Caskin1, Caskin2 does not bind CASK. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 61

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           Y    E EL L  G  + V +K  DGW++G+    G+ G FP+++V
Sbjct: 9   YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYN--GQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +L+   GD+I + ++ D+ WY G +   G  G FP +FV+
Sbjct: 16  DLKFSKGDIIILRRQVDENWYHGEV--NGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212804 cd11871, SH3_p67phox_N, N-terminal (or first) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R +  + P ++ EL++  G++++V KK  D W   T+   G+ GL P +F+E
Sbjct: 3   RVLYEFVPETKEELQVLPGNIVFVLKKGTDNW--ATVVFNGKKGLVPCNFLE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. The N-terminal SH3 domain increases the affinity of p67phox for the oxidase complex. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.76
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.67
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.65
KOG1118|consensus	366		99.64
KOG0162|consensus	1106		99.63
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.56
KOG2199|consensus	462		99.55
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.52
KOG2070|consensus	661		99.52
KOG1029|consensus	1118		99.49
KOG4225|consensus	489		99.43
KOG4226|consensus	379		99.42
KOG4225|consensus	489		99.38
KOG4348|consensus	627		99.31
KOG2996|consensus	865		99.29
KOG4348|consensus	627		99.27
KOG2856|consensus	472		99.24
KOG4226|consensus	379		99.2
KOG2546|consensus	483		99.18
KOG4792|consensus	293		99.18
KOG1702|consensus	264		99.15
KOG1029|consensus	1118		99.12
KOG1264|consensus	1267		99.08
KOG3655|consensus	484		99.06
KOG3523|consensus	695		99.0
KOG0515|consensus	752		99.0
KOG3875|consensus	362		98.94
KOG3601|consensus	222		98.79
KOG1843|consensus	473		98.69
KOG3775|consensus	482		98.62
KOG4278|consensus	1157		98.56
KOG2528|consensus	490		98.42
KOG3632|consensus	1335		98.35
KOG4773|consensus	386		98.33
KOG4792|consensus	293		98.29
KOG2222|consensus	848		98.2
KOG3557|consensus	721		98.17
KOG0197|consensus	468		98.12
KOG3771|consensus	460		98.1
KOG4429|consensus	421		98.07
KOG1451|consensus	812		98.0
KOG0609|consensus	542		98.0
KOG3725|consensus	375		97.84
KOG4575|consensus	874		97.84
KOG3632|consensus	1335		97.47
KOG3601|consensus	222		97.43
KOG3565|consensus	640		97.22
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	97.19
KOG0199|consensus	1039		97.17
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	96.94
smart00287	63	SH3b Bacterial SH3 domain homologues.	96.41
KOG3812|consensus	475		96.03
KOG3705|consensus	580		95.89
PRK10884	206	SH3 domain-containing protein; Provisional	95.44
KOG0040|consensus	2399		95.04
KOG2996|consensus	865		94.66
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	94.65
PRK13914	481	invasion associated secreted endopeptidase; Provis	92.49
COG3103	205	SH3 domain protein [Signal transduction mechanisms	91.9
smart00743	61	Agenet Tudor-like domain present in plant sequence	91.77
PF11302	75	DUF3104: Protein of unknown function (DUF3104); In	90.03
KOG4384|consensus	361		86.72
PF12913	54	SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.	81.65

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.76  E-value=1e-18  Score=94.55  Aligned_cols=49  Identities=49%  Similarity=0.892  Sum_probs=45.1

Q ss_pred             EeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          70 CIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        70 al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      |+|+|.++.++||+|++||+|.|+.+.+++||.|++  +|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN--TGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE--CCEEEEECHHhCC
Confidence            789999999999999999999999999999999998  9999999999986

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.67  E-value=8.8e-17  Score=88.96  Aligned_cols=54  Identities=43%  Similarity=0.812  Sum_probs=48.5

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEE-EeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~-~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      +++|++||.+..+++|+|++||+|.|+ ++..++||.|+.  .|+.||||.+||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEEEC
Confidence            479999999999999999999999999 788889999999  899999999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.65  E-value=3.1e-16  Score=84.41  Aligned_cols=48  Identities=35%  Similarity=0.693  Sum_probs=44.5

Q ss_pred             EEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecC
Q psy9679          69 RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA  116 (122)
Q Consensus        69 ~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~  116 (122)
                      +|+|+|.++..+||+|++||+|.|+++.+++||.++..+++++||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            689999999999999999999999999999999999986789999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG1118|consensus

Probab=99.64  E-value=5.3e-16  Score=110.22  Aligned_cols=60  Identities=32%  Similarity=0.704  Sum_probs=55.4

Q ss_pred             CCCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          61 VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        61 ~~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .....+.|+|+|||++..++||.|++||+|.|+...+.+||.|+.  .|..|+||.|||+.+
T Consensus       302 s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~--~g~sG~FPvnYv~vl  361 (366)
T KOG1118|consen  302 SQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEK--HGESGMFPVNYVEVL  361 (366)
T ss_pred             CcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhee--cCccCccccceeEEe
Confidence            444567899999999999999999999999999999999999999  899999999999874

>KOG0162|consensus

Probab=99.63  E-value=1.6e-15  Score=117.83  Aligned_cols=60  Identities=30%  Similarity=0.713  Sum_probs=54.9

Q ss_pred             CCCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          61 VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        61 ~~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+...+.|.|+|||.+++.+||+|++||+|.++.++..|||.|+.  .|++||||.+||.++
T Consensus      1047 ~~~k~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~--~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1047 KPPKNPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKL--NGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             CCCCCcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhcc--CCccccccccccccC
Confidence            334457899999999999999999999999999999999999997  999999999999864

>smart00326 SH3 Src homology 3 domains

Probab=99.56  E-value=1.9e-14  Score=79.34  Aligned_cols=56  Identities=43%  Similarity=0.877  Sum_probs=51.5

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|+|.+...++|+|++||+|.|++....+||.+++.+ ++.||||.+|++.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~-~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR-GKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCC-CCEEEEchHHEEEC
Confidence            468999999999999999999999999999889999999963 99999999999864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG2199|consensus

Probab=99.55  E-value=8.3e-16  Score=112.40  Aligned_cols=57  Identities=33%  Similarity=0.676  Sum_probs=52.9

Q ss_pred             CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ....++||||||++...+||+|++||||.|++..+..||+|++  .+..|+||.|||..
T Consensus       213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~--~~~~GlFPsnfVT~  269 (462)
T KOG2199|consen  213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGEN--HRGIGLFPSNFVTA  269 (462)
T ss_pred             ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhcccc--CCcccccchhhhhh
Confidence            3466899999999999999999999999999999999999999  78899999999864

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.52  E-value=5.2e-14  Score=76.62  Aligned_cols=52  Identities=42%  Similarity=0.863  Sum_probs=47.9

Q ss_pred             EEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        68 ~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      ++|+|+|.+...++|+|.+||+|.|++..+++||.+++. .++.||||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLL-GGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEccccCc
Confidence            689999999999999999999999999988999999996 3399999999986

>KOG2070|consensus

Probab=99.52  E-value=4.9e-15  Score=111.01  Aligned_cols=56  Identities=34%  Similarity=0.686  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|-|.|.+.+.|||+|.+||+|.|....+.|||.|+.  .|+.||||+|||.+|
T Consensus        17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTl--ng~TGWFPsnYV~ei   72 (661)
T KOG2070|consen   17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTL--NGRTGWFPSNYVREI   72 (661)
T ss_pred             ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccc--cCccCccchHHHHHH
Confidence            34789999999999999999999999999999999999999  999999999999753

>KOG1029|consensus

Probab=99.49  E-value=1.8e-14  Score=112.47  Aligned_cols=55  Identities=29%  Similarity=0.666  Sum_probs=52.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...+.|+|||.++.+|||+|++||+|.|+++++..||.|+.  +|+.|+||+|||..
T Consensus      1053 v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~--ng~sGLFPSNYV~k 1107 (1118)
T KOG1029|consen 1053 VCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGER--NGKSGLFPSNYVQK 1107 (1118)
T ss_pred             cceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccc--cCccccCccccccc
Confidence            45789999999999999999999999999999999999999  89999999999954

>KOG4225|consensus

Probab=99.43  E-value=5.6e-13  Score=98.69  Aligned_cols=56  Identities=48%  Similarity=0.945  Sum_probs=52.9

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++|||.|.++.++||.|.+||+|.|++++++||+.|+..++|+.|.||.|||+.+
T Consensus       434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~~  489 (489)
T KOG4225|consen  434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKRL  489 (489)
T ss_pred             cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCccccccC
Confidence            48999999999999999999999999999999999998877999999999999853

>KOG4226|consensus

Probab=99.42  E-value=4.6e-13  Score=94.33  Aligned_cols=54  Identities=31%  Similarity=0.630  Sum_probs=50.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..+.+.|.|.++.++||++.+|+.|.|.++..+|||+|..  .|+.||||+|||.+
T Consensus       108 t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~--ng~VGWFPSNYv~E  161 (379)
T KOG4226|consen  108 TPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSY--NGQVGWFPSNYVTE  161 (379)
T ss_pred             CceEEEEeeccccccccccccCcEEEEEEeccCcceeccc--CCeeccccccceeh
Confidence            3478889999999999999999999999999999999999  99999999999975

>KOG4225|consensus

Probab=99.38  E-value=2e-12  Score=95.83  Aligned_cols=56  Identities=36%  Similarity=0.807  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|+|+++...||.|.+||+|.|+.+.+..|+.|+.  .|+.|+||++|||.+
T Consensus       230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEh--hGr~GifP~sYvE~~  285 (489)
T KOG4225|consen  230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEH--HGRVGIFPASYVEIL  285 (489)
T ss_pred             cchhhheeccccCCccccccCCCCEEEEEeeccCceeeeee--cceecceechheeec
Confidence            34589999999999999999999999999999999999999  999999999999975

>KOG4348|consensus

Probab=99.31  E-value=5.1e-13  Score=99.16  Aligned_cols=58  Identities=36%  Similarity=0.803  Sum_probs=54.0

Q ss_pred             CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .....|.++|.|.++.++||.|+.||+|.|+.....|||.|..  .|+.|+||+|||.++
T Consensus        98 ~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~L--ngk~GmFPsNFVkel  155 (627)
T KOG4348|consen   98 PQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKL--NGKVGMFPSNFVKEL  155 (627)
T ss_pred             ccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhcee--cCcccccchhhceec
Confidence            3467899999999999999999999999999999999999999  899999999999864

>KOG2996|consensus

Probab=99.29  E-value=1.9e-12  Score=98.99  Aligned_cols=57  Identities=33%  Similarity=0.645  Sum_probs=51.2

Q ss_pred             CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .....++|-|||-+.+-.||+|++||+|.++.+.  +.|||+|+.  .|+.||||++||++
T Consensus       803 ~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGev--ngrvGwFPstYVee  861 (865)
T KOG2996|consen  803 KVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEV--NGRVGWFPSTYVEE  861 (865)
T ss_pred             ceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceeccee--cCcccccccccccc
Confidence            3455788899999999999999999999999875  689999999  99999999999986

>KOG4348|consensus

Probab=99.27  E-value=2.6e-12  Score=95.43  Aligned_cols=56  Identities=39%  Similarity=0.828  Sum_probs=50.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+|+++|.|++++++||.|++||+|.++.++  +.|||.|+.  .|++|+||-|||+.+
T Consensus       261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGEL--nGk~GvFPDNFv~lv  318 (627)
T KOG4348|consen  261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGEL--NGKKGVFPDNFVELV  318 (627)
T ss_pred             hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeee--cCccccCCchhhhhc
Confidence            45899999999999999999999999987764  789999999  999999999998753

>KOG2856|consensus

Probab=99.24  E-value=5.9e-12  Score=91.74  Aligned_cols=56  Identities=36%  Similarity=0.736  Sum_probs=50.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEE-eCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~-~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|||||.++..+||+|+.||.|..+. .+..||+.|+.. .|+.|++|+|||+-+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~-~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLD-SGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCcccccccccccc-CCcccccchhhhhcc
Confidence            68999999999999999999999998665 457899999995 699999999999853

>KOG4226|consensus

Probab=99.20  E-value=1.1e-11  Score=87.39  Aligned_cols=58  Identities=22%  Similarity=0.486  Sum_probs=52.4

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....+.|||.|.+..+.||+|++||.+.|+++.  ++.||++++. .|+.|++|.||++.+
T Consensus       190 vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~-~G~vGLVPrNYv~vl  249 (379)
T KOG4226|consen  190 VLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNA-RGQVGLVPRNYVVVL  249 (379)
T ss_pred             EEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhccc-CCccceeecceEEEe
Confidence            455789999999999999999999999999864  7889999998 899999999999864

>KOG2546|consensus

Probab=99.18  E-value=6.5e-11  Score=87.64  Aligned_cols=55  Identities=44%  Similarity=0.879  Sum_probs=51.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++++|||.+..++||+|.+|-+|.|+++.++|||+|..  ++..|+||.|||+.+
T Consensus       424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~--~~VTglFpgnyve~~  478 (483)
T KOG2546|consen  424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQ--DGVTGLFPGNYVEPL  478 (483)
T ss_pred             HHHHhhcccccccccccccccccEEEEEEecCCcchhhee--cCcceeccCcccccc
Confidence            3588999999999999999999999999999999999999  899999999999864

>KOG4792|consensus

Probab=99.18  E-value=4.7e-12  Score=87.13  Aligned_cols=56  Identities=23%  Similarity=0.631  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..+++++|||.+.++.+|.|++||++.|+++....||.+++. .|++|++|..||+.
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns-~Gk~GmIPvpYVe~  179 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNS-EGKRGMIPVPYVEK  179 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhcc-CCcccceechHHHh
Confidence            457889999999999999999999999999999999999998 99999999999975

>KOG1702|consensus

Probab=99.15  E-value=4.3e-11  Score=81.21  Aligned_cols=58  Identities=36%  Similarity=0.663  Sum_probs=54.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.+++++|.+|.-||.|.-+...++||..|+..++|..|..|+||+|.|
T Consensus       207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            4789999999999999999999999998889999999999999999999999999865

>KOG1029|consensus

Probab=99.12  E-value=2.1e-11  Score=95.68  Aligned_cols=56  Identities=34%  Similarity=0.803  Sum_probs=50.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+|+|||.|++...+|++|..||+|.|-...  ..||..|+.  .|+.||||.+||+.|
T Consensus       693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel--~gktGWFPenyvEki  750 (1118)
T KOG1029|consen  693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGEL--RGKTGWFPENYVEKI  750 (1118)
T ss_pred             eEEEeeecccccCCcccccccCCCEEEEehhccCCccccccee--ccccCcCcHHHHhhc
Confidence            56899999999999999999999999987654  789999999  899999999999864

>KOG1264|consensus

Probab=99.08  E-value=3.3e-11  Score=95.25  Aligned_cols=57  Identities=23%  Similarity=0.508  Sum_probs=52.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...|+|||||.+..++||+|-++-+|..+.+...|||+|... ....+|||+|||++|
T Consensus       774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYG-g~iq~wfPsnyVeei  830 (1267)
T KOG1264|consen  774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYG-GRIQQWFPSNYVEEI  830 (1267)
T ss_pred             chhhhhhhccccCCcccccccccceeEeeeccCCceeecccc-cceeeeccHHHhhhh
Confidence            357999999999999999999999999999999999999995 457899999999875

>KOG3655|consensus

Probab=99.06  E-value=3.7e-11  Score=89.90  Aligned_cols=58  Identities=29%  Similarity=0.590  Sum_probs=53.7

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+.++|+|||++.++.|++|..+|+|.+++..+.|||.|... +|+.|+||+|||+.|
T Consensus       426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~p-dG~~glfPaNyV~li  483 (484)
T KOG3655|consen  426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGP-DGEVGLFPANYVELI  483 (484)
T ss_pred             cCCCccccccccccCCcccccCCccccccccccCCccccccCC-CCCcCcccccccccC
Confidence            4567899999999999999999999999999999999999996 899999999999864

>KOG3523|consensus

Probab=99.00  E-value=1.4e-11  Score=94.48  Aligned_cols=59  Identities=34%  Similarity=0.686  Sum_probs=55.0

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+.+.+...|.+..++||++..+|++.|+.+..+||+.|+.+++|.+||||..|+++|
T Consensus       607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI  665 (695)
T KOG3523|consen  607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEI  665 (695)
T ss_pred             CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHh
Confidence            35678899999999999999999999999999999999999999999999999998864

>KOG0515|consensus

Probab=99.00  E-value=1.3e-10  Score=88.33  Aligned_cols=54  Identities=22%  Similarity=0.446  Sum_probs=48.3

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeC---CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~---~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..+.|+|||+++..|||+|++||.+.|+.++   +..||.+++  .|++|+||.||+..
T Consensus       684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~l--ng~eGyVPRnylgL  740 (752)
T KOG0515|consen  684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARL--NGEEGYVPRNYLGL  740 (752)
T ss_pred             ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhh--cCcccccchhhhhc
Confidence            4688999999999999999999999999874   456999997  99999999999753

>KOG3875|consensus

Probab=98.94  E-value=1e-10  Score=83.66  Aligned_cols=57  Identities=25%  Similarity=0.392  Sum_probs=49.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeC-----CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-----~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.+.++.||+|++||.+.|..++     +..||.....+.+..||||.|||+.|
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi  330 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKII  330 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhh
Confidence            5789999999999999999999999987754     34588888766778899999999864

>KOG3601|consensus

Probab=98.79  E-value=3.8e-09  Score=72.06  Aligned_cols=57  Identities=26%  Similarity=0.514  Sum_probs=52.4

Q ss_pred             CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ....+..++|||.++.+.+|.|++||.+.|++..+.-||.|+.  .|+.|+||++|+..
T Consensus       161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~--lg~agiFpagyv~p  217 (222)
T KOG3601|consen  161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSK--LGRAGIFPAGYVAP  217 (222)
T ss_pred             ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccc--cCceeeecCccccc
Confidence            4456889999999999999999999999999999999999999  79999999999853

>KOG1843|consensus

Probab=98.69  E-value=7.5e-09  Score=76.59  Aligned_cols=54  Identities=26%  Similarity=0.573  Sum_probs=49.3

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..+.++|+|..+..++|.|++||+|.++++.  ...||.|+.  ++++|+||+|||+.
T Consensus       417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~--~~~egifPanyv~~  472 (473)
T KOG1843|consen  417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRG--NGYEGIFPANYVSL  472 (473)
T ss_pred             ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhc--cccccccccceecc
Confidence            3799999999999999999999999999876  467999999  89999999999974

>KOG3775|consensus

Probab=98.62  E-value=1.6e-08  Score=74.27  Aligned_cols=58  Identities=34%  Similarity=0.695  Sum_probs=53.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+..++++.|.+..++||.+.+||-|.|....++-|..|.++|+|++|+||+.|+.+|
T Consensus       262 e~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~ev  319 (482)
T KOG3775|consen  262 EQTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEV  319 (482)
T ss_pred             chhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEec
Confidence            3568999999999999999999999999988899999999999999999999998764

>KOG4278|consensus

Probab=98.56  E-value=1e-07  Score=74.91  Aligned_cols=55  Identities=15%  Similarity=0.427  Sum_probs=47.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|||||.+.++.+|++.+||.+.|+.-.. ..|..++.. +|+ ||||+||+..
T Consensus        90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartK-NGq-GWVPSNyItP  145 (1157)
T KOG4278|consen   90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTK-NGQ-GWVPSNYITP  145 (1157)
T ss_pred             CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeeccc-CCC-cccccccccc
Confidence            457999999999999999999999999998764 458888874 666 9999999865

>KOG2528|consensus

Probab=98.42  E-value=6.6e-08  Score=72.34  Aligned_cols=55  Identities=29%  Similarity=0.642  Sum_probs=50.2

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+|++|||......|+++..+|++.++..+ ..|||.|.+. .|.+|+||+.||+.+
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Ns-rge~GlfPa~yVeV~   59 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNS-RGERGLFPASYVEVT   59 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCc-cCccCCCcccceeee
Confidence            679999999999999999999999988765 7899999998 899999999999864

>KOG3632|consensus

Probab=98.35  E-value=4.6e-07  Score=73.44  Aligned_cols=57  Identities=39%  Similarity=0.642  Sum_probs=48.9

Q ss_pred             cccEEEEeeeCCCCC--------CCceecCCCCEEEEEE-eCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNS--------EYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~--------~~eL~~~~gd~i~v~~-~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||++..        +.||.|++|+||.|+. ++.+|++.|+.  .|+.|+||.|+|.++
T Consensus      1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~--ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL--NGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred             cceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc--ccccccccccccccc
Confidence            356899999998742        3689999999999886 56789999999  899999999999764

>KOG4773|consensus

Probab=98.33  E-value=4.4e-08  Score=71.25  Aligned_cols=57  Identities=32%  Similarity=0.631  Sum_probs=52.1

Q ss_pred             CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...+.+.+++||.+....||.|..||++.++.+++.+||.|+.  .+.+||||.+|++.
T Consensus       173 ~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~--R~~~g~yp~sF~~~  229 (386)
T KOG4773|consen  173 MAAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKV--RGLTGYYPDSFVKQ  229 (386)
T ss_pred             hhhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeee--ccccccccHHhhhh
Confidence            3456789999999999999999999999999999999999999  89999999998864

>KOG4792|consensus

Probab=98.29  E-value=5.8e-06  Score=57.41  Aligned_cols=55  Identities=36%  Similarity=0.562  Sum_probs=47.0

Q ss_pred             ccEEEEeeeCCCC--CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~--~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..+++++++-.+.  +...|.+++||+|.|.++..+|-|+|++  +|+.|.||..||+.
T Consensus       227 Pa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegEl--nGk~G~fPfThvrf  283 (293)
T KOG4792|consen  227 PAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGEL--NGKIGHFPFTHVRF  283 (293)
T ss_pred             ChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeee--cCccccccceeEEe
Confidence            3467777776654  4456999999999999999999999999  99999999999975

>KOG2222|consensus

Probab=98.20  E-value=1e-07  Score=72.50  Aligned_cols=56  Identities=30%  Similarity=0.554  Sum_probs=50.5

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...+++|+.||...+++||-|+++|+|.++.+-+..-|.|+.  +|-+||||+-||+.
T Consensus       547 ~~krakal~df~r~dddelgfrkndiitiisekdehcwvgel--nglrgwfpakfvel  602 (848)
T KOG2222|consen  547 GAKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGEL--NGLRGWFPAKFVEL  602 (848)
T ss_pred             hhHHHHHHhhhhhccccccccccccEEEEeecCCcceeeecc--ccccccchHHHHHH
Confidence            456789999999999999999999999999888888899999  89999999988763

>KOG3557|consensus

Probab=98.17  E-value=3.5e-07  Score=71.22  Aligned_cols=56  Identities=18%  Similarity=0.417  Sum_probs=48.9

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ....+.++|||.++...||++.+||++.|++.. ..||++++. .|+.|++|.|.+..
T Consensus       499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~-~G~~GyvP~nIL~~  554 (721)
T KOG3557|consen  499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDDG-RKWWKVKNG-HGRAGYVPSNILAP  554 (721)
T ss_pred             cceeeeeehhhhcccchhhhhhhhhhhhhhhcc-ccceeccCc-cCCCCCcchhhhcc
Confidence            345899999999999999999999999988764 459999997 89999999987654

>KOG0197|consensus

Probab=98.12  E-value=7.7e-07  Score=67.75  Aligned_cols=57  Identities=18%  Similarity=0.506  Sum_probs=51.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCE-EEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDL-IYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~-i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...+.|+|||.+....+|+|..||+ ..+++..+..||.++....++.|++|.|||..
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~   68 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVAR   68 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeec
Confidence            4579999999999999999999999 67788888899999887688999999999974

>KOG3771|consensus

Probab=98.10  E-value=8.3e-06  Score=61.66  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=43.7

Q ss_pred             CCCCCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCe
Q psy9679          59 QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFV  119 (122)
Q Consensus        59 ~~~~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv  119 (122)
                      ...+.....+.++|||.+++.++|+|..||+|.|+... .+.||.|..  .|..+-++.+|+
T Consensus       394 ~~~p~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~--mg~ke~~~~~~~  453 (460)
T KOG3771|consen  394 DLPPGFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWL--MGVKESDWNGLF  453 (460)
T ss_pred             cCCCCCccceeccccccccccccccccCCCEEEEecCCCccchhhHHH--hhhcccccccce
Confidence            44555667899999999999999999999999998854 455777766  454443444443

>KOG4429|consensus

Probab=98.07  E-value=1.1e-06  Score=63.01  Aligned_cols=54  Identities=20%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..|.++|+|.+...+||...+||++.+.++...|||.|+.  .|..|.||+.|+++
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl--~gd~~hf~Aa~iEe  417 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRL--LGDFEHFHAAEIEE  417 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeee--ccccCCCcHHHHHH
Confidence            4689999999999999999999999888889999999999  78999999999875

>KOG1451|consensus

Probab=98.00  E-value=8.4e-06  Score=63.36  Aligned_cols=56  Identities=32%  Similarity=0.696  Sum_probs=50.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEE-EEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~-v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+.++|...+....+++|..|.++. |.+...+||..|+.  .|+.|++|.|||+.+
T Consensus       756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL--nGktglip~nyve~l  812 (812)
T KOG1451|consen  756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTL--NGKTGLIPSNYVEPL  812 (812)
T ss_pred             cccccceeccCCCCcccccccCcceeeeecccCCCCceeeec--CCCcccCcccccCcC
Confidence            456788999999999999999999987 66678899999999  999999999999865

>KOG0609|consensus

Probab=98.00  E-value=1.5e-06  Score=66.65  Aligned_cols=55  Identities=22%  Similarity=0.488  Sum_probs=45.5

Q ss_pred             ccEEEEeeeCCCCCC-------CceecCCCCEEEEEEeCCCCeEEEEEcC---CCcEEEecCCCe
Q psy9679          65 RERFRCIVPYPPNSE-------YELELRVGDLIYVHKKRDDGWYKGTLQR---TGRTGLFPASFV  119 (122)
Q Consensus        65 ~~~~~al~dy~~~~~-------~eL~~~~gd~i~v~~~~~~gW~~g~~~~---~g~~G~~P~~yv  119 (122)
                      ..+++|+|||++..+       ..|.|++||++.|+.++|..||.++...   .+..|++|+...
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~  278 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKEL  278 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHH
Confidence            468999999998765       3589999999999999999999998853   256789998654

>KOG3725|consensus

Probab=97.84  E-value=3.2e-06  Score=59.80  Aligned_cols=56  Identities=23%  Similarity=0.438  Sum_probs=49.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++++|||++....||++-..|+|.|..-.  +..|..|+.  .+++|-+|..|++.+
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgEr--GnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGER--GNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhh--cCCCCCcchhHHHhc
Confidence            46799999999999999999999999987754  778999999  789999999998753

>KOG4575|consensus

Probab=97.84  E-value=3.9e-05  Score=60.15  Aligned_cols=56  Identities=29%  Similarity=0.527  Sum_probs=44.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      ...++|+|.+.++.+++|-|.+||+|.++.-.+.-||.+........|+||+|||.
T Consensus         8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvh   63 (874)
T KOG4575|consen    8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVH   63 (874)
T ss_pred             CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCccccee
Confidence            45799999999999999999999999888766554554544335567999999984

>KOG3632|consensus

Probab=97.47  E-value=0.00078  Score=55.44  Aligned_cols=61  Identities=41%  Similarity=0.734  Sum_probs=50.1

Q ss_pred             CCCcccEEEEeeeCCC------CCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          61 VPTVRERFRCIVPYPP------NSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        61 ~~~~~~~~~al~dy~~------~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .......+.|.|.|.+      ..+.||.+..|+.|+|... +.+|++.|+.. +|++|++|+|||+.+
T Consensus       443 ~~gk~q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~-dgrrglvPsnFVe~v  510 (1335)
T KOG3632|consen  443 VEGKAQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELR-DGRRGLVPSNFVEVV  510 (1335)
T ss_pred             ccCccceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeee-cccccCCCchheEEe
Confidence            3345668899999877      1246899999999999874 57899999997 999999999999863

>KOG3601|consensus

Probab=97.43  E-value=1.4e-05  Score=54.83  Aligned_cols=51  Identities=24%  Similarity=0.405  Sum_probs=44.5

Q ss_pred             EEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          68 FRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        68 ~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      +.++++|.+...+||+|.+|+.|.+++.. +-.|.+.+.  .|..|++|.||.+
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael--~g~~g~~P~Nai~   54 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAEL--DGPEGFIPKNAIR   54 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhh--cCccccCcccccc
Confidence            46789999999999999999999988865 456888988  8999999999873

>KOG3565|consensus

Probab=97.22  E-value=0.00047  Score=54.91  Aligned_cols=59  Identities=22%  Similarity=0.537  Sum_probs=51.3

Q ss_pred             CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .....+.|+|.|+++.++++++..|+++.+++.+ ++||-+++....+..|+||.+|++.
T Consensus       576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~  635 (640)
T KOG3565|consen  576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDV  635 (640)
T ss_pred             CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccc
Confidence            3456899999999999999999999999988876 7899999844488999999999874

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=97.19  E-value=0.00051  Score=40.88  Aligned_cols=41  Identities=20%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679          78 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV  119 (122)
Q Consensus        78 ~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv  119 (122)
                      +..+|.+++|+++.|++..+..-|.+++. .|+-|+++.+++
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~-~GKYGYV~~~~L   69 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNS-EGKYGYVLRSHL   69 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEET-TTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCC-CCceeEEEHHHc
Confidence            35689999999999999999999999998 999999998876

>KOG0199|consensus

Probab=97.17  E-value=0.00058  Score=54.92  Aligned_cols=52  Identities=27%  Similarity=0.273  Sum_probs=42.2

Q ss_pred             EEeeeCCCCCCCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeE
Q psy9679          69 RCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        69 ~al~dy~~~~~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      +|.-+|+...++.|-|++||.|.|++... ..||+|.+.++++.|.||.+-|.
T Consensus       378 ~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  378 VARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            34444555668899999999999998764 56999999999999999987664

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=96.94  E-value=0.0023  Score=34.55  Aligned_cols=38  Identities=32%  Similarity=0.590  Sum_probs=30.3

Q ss_pred             eecCCCCEEEEEEeCCCC-eEEEEEcCCCcEEEecCCCeE
Q psy9679          82 LELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~~g-W~~g~~~~~g~~G~~P~~yv~  120 (122)
                      -.+..|+.|.++.....+ |++.+.. +++.||+...|++
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~~-~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRTY-DGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEEE-TTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEECc-CCcEEEEEccccC
Confidence            356789999999887655 9999554 8889999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=96.41  E-value=0.011  Score=32.68  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679          82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV  119 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv  119 (122)
                      -.+..|+.+.++...+++|.+.+.. .|+.||++..++
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~-~g~~Gwi~~~~~   61 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYG-SGQRGYVPGYVV   61 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcC-CCCEEEEEeeee
Confidence            4577899999998766589999874 699999977655

>KOG3812|consensus

Probab=96.03  E-value=0.0026  Score=47.04  Aligned_cols=50  Identities=22%  Similarity=0.560  Sum_probs=39.2

Q ss_pred             EEEEeeeCCCCCCC-------ceecCCCCEEEEEEeCCCCeEEEEEcCCC-cEEEecC
Q psy9679          67 RFRCIVPYPPNSEY-------ELELRVGDLIYVHKKRDDGWYKGTLQRTG-RTGLFPA  116 (122)
Q Consensus        67 ~~~al~dy~~~~~~-------eL~~~~gd~i~v~~~~~~gW~~g~~~~~g-~~G~~P~  116 (122)
                      -+++.-+|.+.-.+       .++|...|+|.|.++-+++||.|+..+.| ..||+|+
T Consensus        60 AV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   60 AVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            35566678776543       48999999999999999999999876454 5699986

>KOG3705|consensus

Probab=95.89  E-value=0.0091  Score=45.16  Aligned_cols=55  Identities=35%  Similarity=0.492  Sum_probs=46.8

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..+++++..++...|+.++.||+|.|-...=+|.-+|++.+.++.|+||+--|++
T Consensus       511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            4688999999999999999999999888776777788887789999999865543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.44  E-value=0.024  Score=39.27  Aligned_cols=38  Identities=16%  Similarity=0.205  Sum_probs=32.0

Q ss_pred             eecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeE
Q psy9679          82 LELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      -.+..|+.|.|++..+ .+|.+.+.. .|+.||++..|+.
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~-~G~~GWV~~~~Ls   86 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDS-KGRTAWIPLKQLS   86 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeC-CCCEEeEEHHHhc
Confidence            4678999999998765 679999876 8999999998865

>KOG0040|consensus

Probab=95.04  E-value=0.00029  Score=60.05  Aligned_cols=55  Identities=24%  Similarity=0.547  Sum_probs=48.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...+.|+|||....+.+.+.++||++.++......||..++  ....|++|+.||+.
T Consensus       968 ~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~--~d~qg~vpa~yvk~ 1022 (2399)
T KOG0040|consen  968 KECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEV--NDRQGFVPAAYVKR 1022 (2399)
T ss_pred             HHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchh--hhhcCcchHHHHHH
Confidence            34567899999999999999999999988888888999999  67789999999864

>KOG2996|consensus

Probab=94.66  E-value=0.015  Score=45.92  Aligned_cols=42  Identities=29%  Similarity=0.567  Sum_probs=34.4

Q ss_pred             CceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          80 YELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        80 ~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .-|.+..||++.++..+ ...||.|++...+..||||++-|.+
T Consensus       625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp  667 (865)
T KOG2996|consen  625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKP  667 (865)
T ss_pred             CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCc
Confidence            34889999999877654 6779999998788899999987653

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.65  E-value=0.11  Score=27.99  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=27.4

Q ss_pred             eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679          82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV  119 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv  119 (122)
                      ..+..|..+.|. .+..+|.+.+.  +|..||+....+
T Consensus        19 ~~l~~g~~v~v~-~~~~~W~~V~~--~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVI-ECRGGWCKVRA--DGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEE-EccCCeEEEEE--CCeEEeEEeeec
Confidence            566778888777 44667999994  899999987654

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=92.49  E-value=0.27  Score=38.27  Aligned_cols=38  Identities=24%  Similarity=0.539  Sum_probs=31.7

Q ss_pred             eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      -.+..|+.|.|+.....||++.+.. +|+.||+-..|+.
T Consensus       103 gsl~~G~~V~Vl~~~~ngW~kI~~~-~GktGwV~~~YLs  140 (481)
T PRK13914        103 TSIKGGTKVTVETTESNGWHKITYN-DGKTGFVNGKYLT  140 (481)
T ss_pred             eeecCCCEEEEeecccCCeEEEEcC-CCCEEEEeccccc
Confidence            4688999999987567789999985 6999999888875

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=91.90  E-value=0.4  Score=33.27  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=32.0

Q ss_pred             eecCCCCEEEEEEeCCC-CeEEEEEcCCCcEEEecCCCeE
Q psy9679          82 LELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~~-gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      =+++.||.+.|+..... ||.+.+.. .|+.|||+..++.
T Consensus        48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~-~g~t~wi~~~~lt   86 (205)
T COG3103          48 GSIKAGEKVTVLGTDGNTGYYQIRDS-SGRTGWILSKNLT   86 (205)
T ss_pred             eEecCCcEEEEEEEcCcccEEEEEec-CCceEEEechhhc
Confidence            47899999999988755 89999997 8999999986654

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=91.77  E-value=0.33  Score=26.58  Aligned_cols=24  Identities=25%  Similarity=0.720  Sum_probs=20.5

Q ss_pred             ecCCCCEEEEEEeCCCCeEEEEEc
Q psy9679          83 ELRVGDLIYVHKKRDDGWYKGTLQ  106 (122)
Q Consensus        83 ~~~~gd~i~v~~~~~~gW~~g~~~  106 (122)
                      .|++|+.|.+....+++||.|+..
T Consensus         2 ~~~~G~~Ve~~~~~~~~W~~a~V~   25 (61)
T smart00743        2 DFKKGDRVEVFSKEEDSWWEAVVT   25 (61)
T ss_pred             CcCCCCEEEEEECCCCEEEEEEEE
Confidence            478999999998888899999763

Domain in plant sequences with possible chromatin-associated functions.

>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria

Probab=90.03  E-value=0.51  Score=27.40  Aligned_cols=24  Identities=29%  Similarity=0.801  Sum_probs=18.5

Q ss_pred             eecCCCCEEEEEEeC------CCCeEEEEE
Q psy9679          82 LELRVGDLIYVHKKR------DDGWYKGTL  105 (122)
Q Consensus        82 L~~~~gd~i~v~~~~------~~gW~~g~~  105 (122)
                      |.++.||.+.|....      +..||.|..
T Consensus         4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V   33 (75)
T PF11302_consen    4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQV   33 (75)
T ss_pred             cccCCCCEEEEecCccccccCCCCcEEEEE
Confidence            778999999776543      567999865

>KOG4384|consensus

Probab=86.72  E-value=2.2  Score=31.94  Aligned_cols=57  Identities=25%  Similarity=0.427  Sum_probs=46.0

Q ss_pred             CcccEEEEeeeCCCC--CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          63 TVRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        63 ~~~~~~~al~dy~~~--~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..+..+++.-+|.++  +.++|.++.||+|.++.+..-|-|.|-+  .++.|-|+.-|+..
T Consensus       134 p~c~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~--~~kv~~f~~~~v~~  192 (361)
T KOG4384|consen  134 PFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLL--NNKVGSFKFIYVDV  192 (361)
T ss_pred             CccccccccccCCCCcccccchhhcccchhhccccCccccccccc--cCcccccccceecc
Confidence            344566777777654  6688999999999999999888899988  78899998888764

>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B

Probab=81.65  E-value=5.4  Score=21.64  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=22.2

Q ss_pred             ceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecC
Q psy9679          81 ELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPA  116 (122)
Q Consensus        81 eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~  116 (122)
                      +-.+..|+-|.|++.. +..|..++.  ....||+++
T Consensus        20 ~s~l~~gtPv~i~H~S~D~~W~fV~t--~~~~GWV~s   54 (54)
T PF12913_consen   20 NSALHPGTPVYILHTSRDGAWAFVQT--PFYSGWVKS   54 (54)
T ss_dssp             EEEE-TT-EEEEEEE-TTSSEEEEE---SS-EEEEEG
T ss_pred             hcccCCCCCEEEEEECCCCCEEEEec--CCeeEeeeC
Confidence            4567888989888866 556888888  778899864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		6e-09
4f14_A	64	Structure Of The Sh3 Domain Of Human Nebulette In C		8e-09
3i35_A	60	Human Sh3 Domain Of Protein Lasp1 Length = 60		8e-09
3u23_A	65	Atomic Resolution Crystal Structure Of The 2nd Sh3		1e-08
1ark_A	60	Sh3 Domain From Human Nebulin, Nmr, 15 Structures L		2e-08
2lj1_A	64	The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Len		3e-08
2lj0_A	65	The Third Sh3 Domain Of R85fl Length = 65		3e-08
2fei_A	65	Solution Structure Of The Second Sh3 Domain Of Huma		5e-08
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		9e-08
2ct3_A	70	Solution Structure Of The Sh3 Domain Of The Vinexin		1e-07
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		2e-07
2krn_A	60	High Resolution Structure Of The Second Sh3 Domain		3e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-06
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		4e-06
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		5e-06
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		6e-06
1x2k_A	68	Solution Structure Of The Sh3 Domain Of Human Osteo		8e-06
1zlm_A	58	Crystal Structure Of The Sh3 Domain Of Human Osteoc		9e-06
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		9e-06
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		2e-05
1z9q_A	79	Solution Structure Of Sh3 Domain Of P40phox Length		2e-05
1w6x_A	60	Sh3 Domain Of P40phox, Component Of The Nadph Oxida		2e-05
2yup_A	90	Solution Structure Of The Second Sh3 Domain Of Huma		2e-05
2dyb_A	341	The Crystal Structure Of Human P40(Phox) Length = 3		2e-05
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		3e-05
2cuc_A	70	Solution Structure Of The Sh3 Domain Of The Mouse H		3e-05
2fpf_A	71	Crystal Structure Of The Ib1 Sh3 Dimer At Low Resol		4e-05
2e5k_A	94	Solution Structure Of Sh3 Domain In Suppressor Of T		4e-05
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		5e-05
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		5e-05
1wlp_B	138	Solution Structure Of The P22phox-P47phox Complex L		5e-05
1uec_A	193	Crystal Structure Of Autoinhibited Form Of Tandem S		5e-05
2fpd_A	62	Sad Structure Determination: Crystal Structure Of T		6e-05
2dl3_A	68	Solution Structure Of The First Sh3 Domain Of Human		7e-05
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		7e-05
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		9e-05
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		1e-04
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		1e-04
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		2e-04
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		2e-04
1gri_A	217	Grb2 Length = 217		2e-04
1ov3_A	138	Structure Of The P22phox-P47phox Complex Length = 1		2e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		2e-04
1ng2_A	193	Structure Of Autoinhibited P47phox Length = 193		2e-04
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		2e-04
2vwf_A	58	Grb2 Sh3c (2) Length = 58		2e-04
4glm_A	72	Crystal Structure Of The Sh3 Domain Of Dnmbp Protei		2e-04
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		2e-04
2vvk_A	56	Grb2 Sh3c (1) Length = 56		2e-04
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		3e-04
2lcs_A	73	Yeast Nbp2p Sh3 Domain In Complex With A Peptide Fr		3e-04
2jt4_A	71	Solution Structure Of The Sla1 Sh3-3-Ubiquitin Comp		4e-04
2ew3_A	68	Solution Structure Of The Sh3 Domain Of Human Sh3gl		4e-04
2m0y_A	74	Solution Structure Of The Sh3 Domain Of Dock180 Len		4e-04
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		4e-04
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		5e-04
2djq_A	68	The Solution Structure Of The First Sh3 Domain Of M		7e-04
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		7e-04
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		8e-04
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		8e-04
1z9z_A	60	Crystal Structure Of Yeast Sla1 Sh3 Domain 3 Length		9e-04
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		9e-04

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           E+   I  Y  + E EL  + G +IYV KK DDGWY+G +   G TGLFP ++VES 
Sbjct: 18  EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVESI 72

>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex With A Peptide Of Xirp2 Length = 64

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +R +  Y    E E+  R GD I   +  DDGW  GT+QRTGRTG+ PA+++E
Sbjct: 9   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1 Length = 60

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           R+R +  Y    E E+  + GD I   ++ DDGW  GT++RTG TG+ PA++VE+ 
Sbjct: 5   RYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60

>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain From Human Cd2ap (Cms) In Complex With A Proline-Rich Peptide From Human Rin3 Length = 65

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           P+ + + + + +  Y P +E ELEL+VGD+I ++++ ++GW+ GTL    + GLFP++FV
Sbjct: 2   PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFV 59
Query: 120 ESF 122
           +  
Sbjct: 60  KEL 62

>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures Length = 60

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 63  TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           T  + FR +  Y      E+  + GD I   +  D+GW  GT+QRTGRTG+ PA++VE+ 
Sbjct: 1   TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60

>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Length = 64

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ++ +  Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP ++V+
Sbjct: 9   YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61

>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl Length = 65

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ++ +  Y P ++ ELELR GD++ V +K DDGW+ GT +RT + G FP ++V+
Sbjct: 9   YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61

>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms Protein Length = 65

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           + +  Y P +E ELEL+VGD+I ++++ ++GW+ GTL    + GLFP++FV
Sbjct: 5   KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFV 53

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 4/53 (7%)
Query: 69  RCIVP--YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           RC V   Y P ++ ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F+
Sbjct: 9   RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFI 59

>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin Protein Length = 70

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           +R +  Y P +E ELELR GD + V ++ DDGW+ G  +RT + G FP ++V
Sbjct: 10  YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
            Y P ++ ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F++  
Sbjct: 26  SYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKEL 73

>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of Cd2ap Length = 60

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           + +  Y P +E ELEL VGD+I V ++ ++GW+ GTL    + GLFP++FV+  
Sbjct: 8   KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNN--KLGLFPSNFVKEL 59

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           FR +  + P +  EL +  GD+IY+    D  W+KGT +  GRTGL P+++V
Sbjct: 17  FRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSK--GRTGLIPSNYV 66

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           + +  +    + EL L  GD++ +H+K+++GW+ G+L   G+ G FPA++VE  
Sbjct: 11  KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVEEL 62

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R    +   S  EL L+ GD++Y+HK+ D  W +G  +  GR G+FPA++VE
Sbjct: 5   RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 54

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R    +   S  EL L+ GD++Y+HK+ D  W +G  +  GR G+FPA++VE
Sbjct: 11  RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 60

>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor 1 (Ostf1) Length = 68

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           FR +  + P +  EL    GD+IY+    D  W+KGT +  GRTGL P+++V
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYV 59

>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor Length = 58

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           FR +  + P +  EL    GD+IY+    D  W+KGT +  GRTGL P+++V
Sbjct: 6   FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYV 55

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 64  VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           V+ RF     +   +E EL +  GD+IYV +  + GW++GTL   GRTG FP+++V
Sbjct: 13  VKARFN----FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYV 62

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           R    +   +E EL    GD+I+V +  + GW++GTL   GRTG FP+++V
Sbjct: 12  RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLN--GRTGWFPSNYV 60

>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox Length = 79

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R   +  +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SFV+
Sbjct: 20  RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 71

>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase Length = 60

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R   +  +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SFV+
Sbjct: 6   RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 57

>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Vinexin Length = 90

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  + E EL  R G+ I + +K ++ WY+G +  TGR G+FPAS+V+
Sbjct: 26  FKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72

>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox) Length = 341

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R   +  +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SFV+
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 227

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R +  + P +E EL  + GD+I +  + D+ WY+G L   G++G FP ++VE
Sbjct: 15  RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GQSGFFPINYVE 64

>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse Hypothetical Protein Sh3rf2 Length = 70

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           F  +  Y  +   EL+L+ G+ I V  K  DGW KG    TGRTG+FP+ +V
Sbjct: 10  FVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61

>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution Length = 71

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           R I  + P  E ELEL V D + V  + +D WY+    RTG  G+FPA + 
Sbjct: 10  RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60

>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell Receptor Signaling 1 Length = 94

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYV----HKKRDDGWYKGTLQRTGRTGLFPASFV 119
           E  + I PY P ++ ELEL  GD I++         +GW  GT   TG +GL P +++
Sbjct: 17  ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 74

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R +  + P +E EL  + GD+I +  + D+ WY+G L   G +G FP ++VE
Sbjct: 11  RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINYVE 60

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P  +   + +  + P ++ EL  R GDLI +  + D+ WY+G L   G++G FP S+V+
Sbjct: 10  PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLH--GQSGFFPLSYVQ 66

>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex Length = 138

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P + + +R I  Y   S  E+ L  GD++ V +K + GW+    Q   + G  PASF+E
Sbjct: 7   PIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLE 63

>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3 Domain Of P47phox Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P + + +R I  Y   S  E+ L  GD++ V +K + GW+    Q   + G  PASF+E
Sbjct: 8   PIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIPASFLE 64

>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold Protein Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           R I  + P  E ELEL V D + V  + +D WY+    RTG  G+FPA + 
Sbjct: 7   RAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYYA 57

>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1 Length = 68

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R    +   +  EL L+ GD++Y++K+ D  WY+G  +  GR G+FP +++E
Sbjct: 11  RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRTYIE 60

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +R +  Y   +  EL+L  GD++ V  + +DGW+  T++R G+ G  P S++E
Sbjct: 9   QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYLE 61

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           R    +   +E EL    GD+I+V +  + GW++GT    GRTG FP+++V
Sbjct: 10  RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 58

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  +  + P    +LE+R GD+I + +  ++ W+KG +Q   R G FPA+FV+
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQD--RIGFFPANFVQ 60

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           R    +   +E EL    GD+I+V +  + GW++GT    GRTG FP+++V
Sbjct: 10  RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 58

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           Y  N+E EL    G LI V  K D  W++G +   G TGLFP+++V
Sbjct: 27  YAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYV 70

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           R    +   +E EL    GD+I+V +  + GW++GT    GRTG FP+++V
Sbjct: 8   RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 56

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 59  QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
           + VP      + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++
Sbjct: 152 EQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNY 209
Query: 119 V 119
           V
Sbjct: 210 V 210

>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex Length = 138

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
           P   P   + + +R I  Y   S  E+ L  GD++ V +K + GW+    Q   + G  P
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIP 59
Query: 116 ASFVE 120
           ASF+E
Sbjct: 60  ASFLE 64

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
            Y    + EL + VG++I   +K D GW++G  Q  GR GLFP +FV
Sbjct: 9   DYQAQHDDELTISVGEIITNIRKEDGGWWEG--QINGRRGLFPDNFV 53

>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox Length = 193

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
           P   P   + + +R I  Y   S  E+ L  GD++ V +K + GW+    Q   + G  P
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWW--FCQMKAKRGWIP 59
Query: 116 ASFVE 120
           ASF+E
Sbjct: 60  ASFLE 64

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y  N+E EL    G LI V  K D  W++G +   G TGLFP+++V+
Sbjct: 43  YAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--GVTGLFPSNYVK 87

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++V +
Sbjct: 6   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVTA 56

>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo Sapiens] Length = 72

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           EL+  VGD I +    +DGW +G+L+  GRTG+FP  FV+
Sbjct: 29  ELDFEVGDKIRILATLEDGWLEGSLK--GRTGIFPYRFVK 66

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++V
Sbjct: 6   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++V
Sbjct: 4   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 52

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++V
Sbjct: 6   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54

>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From Ste20p Length = 73

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 61  VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           +  V +R   +  + P ++ EL L  GD++++  K   GW     +   +TGL P  FV
Sbjct: 1   MAIVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59

>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex Length = 71

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 65  RERFRCIVPYP--PNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + + R IV Y     S+ EL ++ GD +Y+   K+   W+   L  +G++GL PA F+E
Sbjct: 4   KSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62

>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3 Length = 68

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R +  + P ++ EL  + GD+I +  + D+ WY+G +   G +G FP ++VE
Sbjct: 7   RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56

>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180 Length = 74

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 61  VPTVRERFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPAS 117
           VPT RE    +    Y      EL L++GD +++ +  + GWY+G TL++  + G+FPAS
Sbjct: 5   VPTKREEKYGVAFYNYDARGADELSLQIGDTVHILETYE-GWYRGYTLRKKSKKGIFPAS 63
Query: 118 FV 119
           ++
Sbjct: 64  YI 65

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFV 119
           ++  + I PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +FV
Sbjct: 9   KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 63

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVE 120
           ++  + I PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +FV+
Sbjct: 3   KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 58

>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse Sh3 Domain Containing Ring Finger 2 Length = 68

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R + +  Y   +  +L+   GD+I + ++ D+ WY+G +   G +G+FPAS VE
Sbjct: 9   RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI--NGVSGIFPASSVE 60

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVE 120
           + I PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +FV+
Sbjct: 11  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 62

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFV 119
           + I PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +FV
Sbjct: 6   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFV 56

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           + + +  Y   +  EL  + GD I VH+K   GW++G L   G+ G  PA++V+  
Sbjct: 6   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQDI 59

>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3 Length = 60

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 69  RCIVPYP--PNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R IV Y     S+ EL ++ GD +Y+   K+   W+   L  +G++GL PA F+E
Sbjct: 4   RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           + + +  Y   +  EL  + GD I VH+K   GW++G L   G+ G  PA++V+  
Sbjct: 5   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQDI 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-26
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	3e-26
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	7e-26
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	1e-24
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	7e-24
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	7e-23
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	1e-22
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	1e-21
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	2e-21
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	8e-21
3u23_A	65	CD2-associated protein; structural genomics, struc	8e-20
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	2e-19
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	4e-19
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	4e-19
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	7e-19
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	2e-18
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-18
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	5e-18
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	7e-18
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	8e-18
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	8e-18
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-17
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	1e-17
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	1e-17
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	2e-17
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	2e-17
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	3e-17
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	4e-17
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	4e-17
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	4e-17
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	5e-17
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	5e-17
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	7e-17
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	7e-17
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	8e-17
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	8e-17
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	8e-17
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	8e-17
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-16
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-11
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-16
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	1e-16
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-16
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	2e-16
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	2e-16
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	2e-16
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-16
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	3e-16
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	3e-16
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	3e-16
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	4e-16
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	4e-16
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	5e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	5e-16
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	6e-16
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	7e-16
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	7e-16
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	8e-16
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	9e-16
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	9e-16
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	9e-16
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	9e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	1e-15
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	1e-15
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	1e-15
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	1e-15
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-15
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	1e-15
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	1e-15
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	2e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	3e-15
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	3e-15
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	3e-15
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	4e-15
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-15
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	4e-15
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	4e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	5e-15
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	5e-15
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	6e-10
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	7e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	7e-15
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	8e-15
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	8e-15
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	1e-14
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-14
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	1e-14
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-14
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-14
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	2e-14
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	2e-14
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	2e-14
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	2e-14
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	2e-14
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	2e-14
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	3e-14
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	3e-14
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	3e-14
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-14
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	3e-14
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	3e-14
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	5e-14
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	5e-14
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	5e-14
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	5e-14
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-14
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	5e-14
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	6e-14
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	6e-14
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	6e-14
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	9e-14
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	1e-13
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-13
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	3e-11
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-13
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-13
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	1e-13
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	2e-13
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	2e-13
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	2e-13
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	3e-09
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	2e-13
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	3e-13
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	3e-13
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	3e-13
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	4e-13
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	7e-13
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	7e-13
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	7e-13
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	8e-13
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	9e-13
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	1e-12
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	1e-12
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	1e-12
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-12
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	1e-12
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	2e-12
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-12
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	3e-12
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-12
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	5e-12
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	7e-12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	7e-12
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	7e-12
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	1e-11
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-11
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	1e-11
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	1e-11
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	1e-11
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-11
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	2e-11
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-11
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	3e-11
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	4e-11
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	5e-11
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	6e-11
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	7e-11
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	8e-11
1wxb_A	68	Epidermal growth factor receptor pathway substrate	8e-11
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	9e-11
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-10
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	2e-10
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	3e-10
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	3e-10
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	4e-10
1awj_A	77	ITK; transferase, regulatory intramolecular comple	5e-10
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	5e-10
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	9e-10
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	9e-10
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	1e-09
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	2e-09
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	3e-09
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	7e-09
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-08
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	1e-08
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	4e-08
1i07_A	60	Epidermal growth factor receptor kinase substrate	5e-08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	6e-08
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	6e-08
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	6e-08
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	1e-07
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-07
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-07
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-06
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-06
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	2e-05
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	3e-05
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-05
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	4e-05
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	6e-05
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	7e-05
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-04

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 92.2 bits (230), Expect = 2e-26
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +R   +  + P ++ EL L  GD++++  K   GW     +   +TGL P  FV 
Sbjct: 2   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 92.4 bits (230), Expect = 3e-26
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 61  VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  V +R   +  + P ++ EL L  GD++++  K   GW     +   +TGL P  FV 
Sbjct: 1   MAIVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 91.1 bits (227), Expect = 7e-26
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  R I  + P  E ELEL V D + V  + +D WY+    RTG  G+FPA +  
Sbjct: 4   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 88.1 bits (219), Expect = 1e-24
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +  R I  + P  E ELEL V D + V  + +D WY+    RTG  G+FPA +  
Sbjct: 6   EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 85.7 bits (213), Expect = 7e-24
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             +R +  Y    E E+  R GD I   +  DDGW  GT+QRTGRTG+ PA+++E
Sbjct: 7   RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 83.8 bits (208), Expect = 7e-23
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             +R +  Y P +E ELELR GD + V ++ DDGW+ G  +RT + G FP ++V 
Sbjct: 8   TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 83.2 bits (206), Expect = 1e-22
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 64  VRERFRCIVPYPPNSEY-ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +R R R I+PY    +  E+    GD+  VH + +DGW   T  RT   GL     VE
Sbjct: 4   MRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 81.4 bits (201), Expect = 1e-21
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRT 111
                     E  + I PY P ++ ELEL  GD I++         +GW  GT   TG +
Sbjct: 7   GSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCS 66

Query: 112 GLFPASFVE 120
           GL P +++ 
Sbjct: 67  GLLPENYIT 75

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 80.1 bits (198), Expect = 2e-21
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 42  SASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWY 101
           S+ S      +++   PQ              +      E+ L+  D++ V ++ +DGW 
Sbjct: 2   SSGSSGWQGLSSKGDLPQ--------VEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWL 52

Query: 102 KGTLQRTGRTGLFPASFVE 120
            G   R G TG FP  F  
Sbjct: 53  YGERLRDGETGWFPEDFAR 71

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 78.1 bits (193), Expect = 8e-21
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 60  PVPTVRERFRCIVPYPP-NSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPAS 117
           P+ + R R + I  +   ++   L  + GDLI +   +  DGW+ G  ++T   G FP S
Sbjct: 2   PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61

Query: 118 FVE 120
           +  
Sbjct: 62  YTR 64

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 75.7 bits (187), Expect = 8e-20
 Identities = 23/61 (37%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           P+ + + + + +  Y P +E ELEL+VGD+I ++++ ++GW+ GTL    + GLFP++FV
Sbjct: 2   PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFV 59

Query: 120 E 120
           +
Sbjct: 60  K 60

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 81.1 bits (199), Expect = 2e-19
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
                 I  + P +  E+ +  GD+I V     DG+ KG  ++ GRTGL+P+  V 
Sbjct: 442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVR 497

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 74.2 bits (183), Expect = 4e-19
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             F  +  Y  +   EL+L+ G+ I V  K  DGW KG    TGRTG+FP+ +V 
Sbjct: 8   NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 74.8 bits (184), Expect = 4e-19
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 51  PNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 110
              +    +     R R +    Y P ++ ELEL+VGD+I V  + ++GW++G L   G+
Sbjct: 4   GGQQMGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GK 61

Query: 111 TGLFPASFVE 120
           TG+FP++F++
Sbjct: 62  TGMFPSNFIK 71

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 73.5 bits (181), Expect = 7e-19
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 62  PTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +   R R I+PY       E+    GD+  VH + +DGW   T  RT   GL     VE
Sbjct: 4   GSSGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 72.2 bits (178), Expect = 2e-18
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E  R +  + P ++ EL++  G++++V KK +D W        G+ GL P +++E
Sbjct: 8   EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF--NGQKGLVPCNYLE 60

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 72.1 bits (177), Expect = 4e-18
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ---RTGRTGLFPASF 118
            +  E  +    Y  +   +L L  G LI + KK   GW++G LQ   +  + G FPAS 
Sbjct: 4   GSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASH 63

Query: 119 VES 121
           V+ 
Sbjct: 64  VKL 66

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 71.2 bits (175), Expect = 5e-18
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 65  RERFRCIVPYPP-NSEYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +++ + I P+   +++  L    GD+I +   +  DGW  G    +   G FP+S+ +
Sbjct: 6   KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 70.7 bits (174), Expect = 7e-18
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +  + +R +  Y   +  EL+L  GD++ V  + +DGW+       G+ G  P S++E
Sbjct: 5   SSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER--NGQRGFVPGSYLE 61

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 70.8 bits (174), Expect = 8e-18
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 65  RERFRCIVPYPP-NSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            ++ + I P+   N++  L    GD++ +   +  DGW  G    T   G FP+S+ +
Sbjct: 7   GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 72.0 bits (176), Expect = 8e-18
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 15/111 (13%)

Query: 25  SSSTQHNHRKSNSLDASSASSPV--ASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYEL 82
            SS  H+H  S  +   S  + V  A + +    +    P    + +    Y      EL
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDEL 61

Query: 83  ELRVGDLIYV-----HKKRDDGWYKGTLQR--------TGRTGLFPASFVE 120
           +L+ GD++ V      +++D+GW  G  +             G+FP +F E
Sbjct: 62  QLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTE 112

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 71.0 bits (174), Expect = 1e-17
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 44  SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
           SS  + DP       + +  +         Y    E EL L  G  + V +K  DGW++G
Sbjct: 2   SSGSSGDP------GERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG 55

Query: 104 TLQRTGRTGLFPASFVE 120
           +    G+ G FP+++V 
Sbjct: 56  SYN--GQVGWFPSNYVT 70

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 70.3 bits (173), Expect = 1e-17
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  R    +   S  EL L+ GD++Y+HK+ D  W +G     GR G+FPA++VE
Sbjct: 2   KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVE 54

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 70.3 bits (173), Expect = 1e-17
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 57  KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
                  VR +F     +   +E EL    GD+I+V +  + GW++GT    GRTG FP+
Sbjct: 2   SANSQLVVRAKF----NFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPS 55

Query: 117 SFVE 120
           ++V 
Sbjct: 56  NYVR 59

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 69.5 bits (171), Expect = 2e-17
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
           P   P  +  +     Y      EL     D+I + K+   GW+ G L+  G+ GLFP +
Sbjct: 2   PLGSPQCKALY----AYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNN 55

Query: 118 FVE 120
           +V 
Sbjct: 56  YVT 58

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 69.6 bits (171), Expect = 2e-17
 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            + + +  Y P +E ELEL+VGD+I ++++ ++GW+ GTL    + GLFP++FV+
Sbjct: 2   RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 54

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 69.3 bits (170), Expect = 3e-17
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 49  SDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 108
           S  ++  P   P   + E+   I  Y  + E EL  + G +IYV KK DDGWY+G +   
Sbjct: 2   SSGSSGDPPWAPRSYL-EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN-- 58

Query: 109 GRTGLFPASFVE 120
           G TGLFP ++VE
Sbjct: 59  GVTGLFPGNYVE 70

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 68.8 bits (169), Expect = 4e-17
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 57  KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
           + +    V   F     Y      +LE + GD+I V  K ++ W +G  +  G+ G+FP 
Sbjct: 1   QLKKGSQVEALF----SYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPK 54

Query: 117 SFVE 120
            FVE
Sbjct: 55  VFVE 58

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 68.8 bits (169), Expect = 4e-17
 Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +   R +    Y P ++ ELEL+VGD+I V  + ++GW++G L   G+TG+FP++F++
Sbjct: 4   GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNFIK 60

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 69.8 bits (171), Expect = 4e-17
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 41  SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 100
           +S    +        P   PV  V   +     Y  N+E EL    G LI V  K D  W
Sbjct: 14  ASHVKLLGPSSERATPAFHPVCQVIAMY----DYAANNEDELSFSKGQLINVMNKDDPDW 69

Query: 101 YKGTLQRTGRTGLFPASFVE 120
           ++G +   G TGLFP+++V+
Sbjct: 70  WQGEIN--GVTGLFPSNYVK 87

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 68.8 bits (169), Expect = 5e-17
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 55  KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLF 114
            P+  P P  +   + +  + P ++ EL  R GDLI +  + D+ WY+G L   G++G F
Sbjct: 4   DPEFMP-PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFF 60

Query: 115 PASFVE 120
           P S+V+
Sbjct: 61  PLSYVQ 66

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 69.2 bits (169), Expect = 5e-17
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 15/80 (18%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR---------------DDGW 100
           P          ++R + P+      +LEL  GD++ V +                   GW
Sbjct: 2   PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61

Query: 101 YKGTLQRTGRTGLFPASFVE 120
             G  +RT + G FP ++VE
Sbjct: 62  MPGLNERTRQRGDFPGTYVE 81

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 68.5 bits (168), Expect = 7e-17
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 57  KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPA 116
                 + +   +    +   +E EL +  GD+IYV +  + GW++GTL   GRTG FP+
Sbjct: 2   SSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPS 59

Query: 117 SFVE 120
           ++V 
Sbjct: 60  NYVR 63

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 67.9 bits (167), Expect = 7e-17
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + FR +  + P +  EL    GD+IY+    D  W+KGT +  GRTGL P+++V 
Sbjct: 4   KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVA 56

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 67.9 bits (167), Expect = 8e-17
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 64  VRERFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  R      +  NS+ EL  + GD+I++  + +  W +GT++  G TG+FP SFV+
Sbjct: 1   LIKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 57

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 68.4 bits (168), Expect = 8e-17
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
                   +  +++ E+  R G+ I + ++ D+ WY+G +  T R G+FP ++V+
Sbjct: 8   GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 67.9 bits (167), Expect = 8e-17
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 69  RCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             IV   Y    + EL + VG++I   +K D GW++G +   GR GLFP +FV 
Sbjct: 3   EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNFVR 54

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 68.5 bits (168), Expect = 8e-17
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 44  SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
           +  V    ++        P     F     +  NS+ EL  + GD+I++  + +  W +G
Sbjct: 2   NHKVHH-HHHHHMDRMAAPRAEALF----DFTGNSKLELNFKAGDVIFLLSRINKDWLEG 56

Query: 104 TLQRTGRTGLFPASFVE 120
           T++  G TG+FP SFV+
Sbjct: 57  TVR--GATGIFPLSFVK 71

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 71.2 bits (174), Expect = 1e-16
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
           P   P   + + +R I  Y   S  E+ L  GD++ V +K + GW+   ++   + G  P
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK--AKRGWIP 59

Query: 116 ASFVE 120
           ASF+E
Sbjct: 60  ASFLE 64

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 47  VASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 106
           +    +  + +        E +  I  Y      E+ L  G+ + V  K  DGW+     
Sbjct: 63  LEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 122

Query: 107 RTGRTGLFPASFVE 120
               TG FP+ +++
Sbjct: 123 --DVTGYFPSMYLQ 134

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 67.6 bits (166), Expect = 1e-16
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y    + EL     D I   +  DD W+ G L++ G  GLFP+++V 
Sbjct: 9   YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 67.6 bits (166), Expect = 1e-16
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
               VR +F     +   +E EL    GD+I+V +  + GW++GT    GRTG FP+++V
Sbjct: 3   LGSVVRAKF----NFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYV 56

Query: 120 E 120
            
Sbjct: 57  R 57

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 67.8 bits (166), Expect = 1e-16
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 58  PQPVPTVRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
                    R R    + P+      L+L+ GD+I +  K   G + G L    + G F 
Sbjct: 2   SSGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFK 59

Query: 116 ASFVE 120
             +V+
Sbjct: 60  FIYVD 64

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 67.8 bits (165), Expect = 2e-16
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRT 111
           ++R +  Y    E +++L +GD++ V+K                 + GW  G  + TG  
Sbjct: 7   QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66

Query: 112 GLFPASFVE 120
           G FP ++VE
Sbjct: 67  GDFPGTYVE 75

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 67.8 bits (166), Expect = 2e-16
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 44  SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
           SS  +  P     +         ++     +  + E EL  R G+ I + +K ++ WY+G
Sbjct: 2   SSGSSGKP--PTYQVLEYGEAVAQY----TFKGDLEVELSFRKGEHICLIRKVNENWYEG 55

Query: 104 TLQRTGRTGLFPASFVE 120
            +  TGR G+FPAS+V+
Sbjct: 56  RITGTGRQGIFPASYVQ 72

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 66.8 bits (164), Expect = 2e-16
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           P   V+  +     Y   +  EL  + GD I VH+K   GW++G L   G+ G  PA++V
Sbjct: 2   PGIQVKALY----DYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELN--GKRGWVPANYV 55

Query: 120 E 120
           +
Sbjct: 56  Q 56

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 67.0 bits (164), Expect = 2e-16
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 52  NNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT 111
           ++             + R I  +    + EL  + G++I V    D  W+KG        
Sbjct: 4   HHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--QGI 61

Query: 112 GLFPASFVES 121
           GLFP++FV +
Sbjct: 62  GLFPSNFVTA 71

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 67.0 bits (164), Expect = 3e-16
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 69  RCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + I    P +  +  L L VGD++ V +   +G ++G +   GR GLFP + V+
Sbjct: 5   KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVK 56

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 66.5 bits (163), Expect = 3e-16
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
           P     +      +  Y    + E+     D+I   +  DDGW++G  +  GR GLFPA+
Sbjct: 2   PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPAN 59

Query: 118 FVE 120
           +VE
Sbjct: 60  YVE 62

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 66.5 bits (163), Expect = 3e-16
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 67  RFRCIVPYPP-NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            F     +P   S  EL L+ GD+IY+ ++   GW  G L    + G  P ++++
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 67.1 bits (164), Expect = 4e-16
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 49  SDPNNRKPKPQPVPTVRERFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQ 106
               +  P P          + I    P +  +  L L VGD++ V +   +G ++G + 
Sbjct: 1   GSSGSSGPLPST-QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN 59

Query: 107 RTGRTGLFPASFVE 120
             GR GLFP + V+
Sbjct: 60  --GRKGLFPFTHVK 71

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 66.6 bits (163), Expect = 4e-16
 Identities = 13/65 (20%), Positives = 24/65 (36%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
                  T    F  +  Y   +E +L    G+   +    +  W++     TG TG  P
Sbjct: 6   TLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIP 65

Query: 116 ASFVE 120
           +++V 
Sbjct: 66  SNYVA 70

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 66.1 bits (162), Expect = 5e-16
 Identities = 14/47 (29%), Positives = 30/47 (63%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  +++ E+  R G+ I + ++ D+ WY+G +  T R G+FP ++V+
Sbjct: 15  FNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 66.2 bits (162), Expect = 5e-16
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
              + V      F     Y   +  EL  R GD++ +H++    W++G     G  GL P
Sbjct: 5   SSGEGVVEAVACF----AYTGRTAQELSFRRGDVLRLHERASSDWWRGEH--NGMRGLIP 58

Query: 116 ASFVE 120
             ++ 
Sbjct: 59  HKYIT 63

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 65.6 bits (161), Expect = 6e-16
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            + P  + +L L+ GD + + +K    WYKG+    GRTG+FPA++V+
Sbjct: 10  QFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCN--GRTGIFPANYVK 55

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 66.3 bits (162), Expect = 7e-16
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 40  ASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG 99
            SS SS           + Q    V  + R +  +    + EL  + G++I V    D  
Sbjct: 1   GSSGSSG---------SEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDAN 51

Query: 100 WYKGTLQRTGRTGLFPASFVE 120
           W+KG        GLFP++FV 
Sbjct: 52  WWKGENH--RGIGLFPSNFVT 70

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 67.1 bits (164), Expect = 7e-16
 Identities = 14/81 (17%), Positives = 32/81 (39%)

Query: 40  ASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG 99
           +S +S   +S        P  +      F  +  Y   +  +L  + G+   +    +  
Sbjct: 2   SSGSSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGD 61

Query: 100 WYKGTLQRTGRTGLFPASFVE 120
           W++     TG++G  P+++V 
Sbjct: 62  WWEARSIATGKSGYIPSNYVV 82

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 65.8 bits (161), Expect = 8e-16
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +     + +  +    + EL L  GD++ +H+K+++GW+ G+L   G+ G FPA++VE
Sbjct: 4   GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAYVE 60

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 65.4 bits (160), Expect = 9e-16
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +  E++  +  Y      EL L+ G+++ V +K + GW+  +       G  PA+++E
Sbjct: 5   SSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS--EEQGWVPATYLE 61

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 66.0 bits (161), Expect = 9e-16
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 44  SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK-----RDD 98
           SS V     N   +          +  +  Y    + EL LR GD + V  +      D+
Sbjct: 8   SSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDE 67

Query: 99  GWYKGTLQRTGRTGLFPASFVE 120
           GW+ G L   GR G+FP+++V 
Sbjct: 68  GWWTGQLPS-GRVGVFPSNYVA 88

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 65.3 bits (160), Expect = 9e-16
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P  R  +     + P ++ EL  + GD+I +  + D+ WY+G +   G +G FP ++VE
Sbjct: 4   PCCRGLY----DFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 65.3 bits (160), Expect = 9e-16
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + FR +  + P +  EL    GD+IY+    D  W+KGT +  GRTGL P+++V 
Sbjct: 8   KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVA 60

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 65.3 bits (160), Expect = 1e-15
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            T +E    +  Y   S  EL ++ GD++ +    +  W+K  +   GR G  PA++++
Sbjct: 3   ETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV--NGRQGFVPAAYLK 59

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 65.4 bits (160), Expect = 1e-15
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGL 113
            + +     +  F    PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+
Sbjct: 4   SRTKSKDYCKVIF----PYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGV 57

Query: 114 FPASFVE 120
           FP +FV+
Sbjct: 58  FPDNFVK 64

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 64.9 bits (159), Expect = 1e-15
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 57  KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLF 114
                   R  F    PY   +E EL  R G++I++  K   + GW+KG L   G+ G+F
Sbjct: 2   AMGAKEYCRTLF----PYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVF 55

Query: 115 PASFVE 120
           P +F  
Sbjct: 56  PDNFAV 61

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 65.3 bits (160), Expect = 1e-15
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
              R    +   +  EL L+ GD++Y++K+ D  WY+G     GR G+FP +++E
Sbjct: 8   RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--GRVGIFPRTYIE 60

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 65.0 bits (159), Expect = 1e-15
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 69  RCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R I    PN+  +  L L VG+L+ V K    G ++G     G+ G FP + V 
Sbjct: 10  RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR 61

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 64.9 bits (159), Expect = 1e-15
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +  + +  + P    EL  + GD+I +  K D  W++G L    R G+FP+++V 
Sbjct: 2   TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN--NRRGIFPSNYVC 55

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 64.9 bits (159), Expect = 1e-15
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
               P  +        Y   +  +L+   GD+I + ++ D+ WY+G +   G +G+FPAS
Sbjct: 4   GSSGPRAKALC----NYRGKNPGDLKFNKGDVILLRRQLDENWYQGEIN--GVSGIFPAS 57

Query: 118 FVE 120
            VE
Sbjct: 58  SVE 60

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 65.1 bits (159), Expect = 2e-15
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 41  SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 100
           SS SS    +  N         T    +     Y    + E+     D+I   +  DDGW
Sbjct: 2   SSGSSGTYDEYEN-----DLGITAVALY----DYQAAGDDEISFDPDDIITNIEMIDDGW 52

Query: 101 YKGTLQRTGRTGLFPASFVE 120
           ++G  +  GR GLFPA++VE
Sbjct: 53  WRGVCK--GRYGLFPANYVE 70

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 64.2 bits (157), Expect = 3e-15
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 59  QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
                VR  +     +    + EL  + G+LI V    D  W++G       TGLFP++F
Sbjct: 3   HMARRVRALY----DFEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNF 56

Query: 119 VES 121
           V +
Sbjct: 57  VTT 59

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 64.3 bits (157), Expect = 3e-15
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +  E++  + PY   S+ E+    G  + V +K  +GW+       G+ G  PAS+++
Sbjct: 5   SSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--GKEGWAPASYLK 61

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 64.3 bits (157), Expect = 3e-15
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 61  VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  +   F  +  Y   +E +L    G+   +    +  W++     TG TG  P+ ++ 
Sbjct: 1   MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLA 60

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
              R +  +    E EL  R G+++ V    +  W+ G L    + GLFPA++V 
Sbjct: 2   RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVA 54

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 63.9 bits (156), Expect = 4e-15
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 61  VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + T +E    +  Y   S  E+ ++ GD++ +    +  W+K  +    R G  PA++V+
Sbjct: 1   MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVK 58

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 63.8 bits (156), Expect = 4e-15
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
               P  R  +     + P +E EL  + GD+I +  + D+ WY+G L   G +G FP +
Sbjct: 4   GSSGPCCRALY----DFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPIN 57

Query: 118 FVE 120
           +VE
Sbjct: 58  YVE 60

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 63.9 bits (156), Expect = 4e-15
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 59  QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPAS 117
                   R + I     +++ EL    G++I V  + D  W+ G ++ +  R G+FP S
Sbjct: 4   GSSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVS 63

Query: 118 FVE 120
           FV 
Sbjct: 64  FVH 66

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 63.8 bits (156), Expect = 5e-15
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             +  +  + P    +LE+R GD+I + +  ++ W+KG +Q   R G FPA+FV+
Sbjct: 8   NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFVQ 60

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 68.5 bits (166), Expect = 5e-15
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 2/110 (1%)

Query: 11  HYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRC 70
            YV +   A  S S+    +               P A    N          +  R   
Sbjct: 185 PYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQ 244

Query: 71  IVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
                   +  L L VG+L+ V K    G ++G     G+ G FP + V 
Sbjct: 245 KRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR 292

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 54.2 bits (129), Expect = 6e-10
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 1   MLVNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQP 60
            ++N +G      P P       S S  +   ++ +SL A      +         +P  
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119

Query: 61  ----------VPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 110
                          E  R +  +  N E +L  + GD++ +  K ++ W+       G+
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE-DSEGK 178

Query: 111 TGLFPASFVE 120
            G+ P  +VE
Sbjct: 179 RGMIPVPYVE 188

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 63.1 bits (154), Expect = 7e-15
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
                +  E +  +  +      +L  + G+++ V +K+ DGW+     + G  GL P +
Sbjct: 3   ESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAK-GNEGLVPRT 61

Query: 118 FVE 120
           ++E
Sbjct: 62  YLE 64

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 63.0 bits (154), Expect = 7e-15
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++V 
Sbjct: 10  DFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVT 55

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 63.1 bits (154), Expect = 8e-15
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 66  ERFRCIVPYPPN-SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +F     +P + S  EL L+ GD++++ +    GW    L    + G  P +++ 
Sbjct: 3   PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT 58

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 62.5 bits (153), Expect = 8e-15
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
               I  Y    + E+ +  GD+I V +  D  GW  G     G  GLFP S+ +
Sbjct: 2   AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYCK 54

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 62.7 bits (153), Expect = 1e-14
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 59  QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASF 118
             V T       +  Y  N   EL +  GD+I V  K ++ W+ G++ + G+ G FPA+ 
Sbjct: 1   HQVDTA-PTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANH 58

Query: 119 VES 121
           V S
Sbjct: 59  VAS 61

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 62.2 bits (152), Expect = 1e-14
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           E  R +  +  N E +L  + GD++ +  K ++ W+       G+ G+ P  +VE +
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEKY 57

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 62.2 bits (152), Expect = 1e-14
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
                    +F     Y   S  EL  + G  + ++ +  + W++G     G  GL P  
Sbjct: 3   LGSPEFAIAKF----DYVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQ 56

Query: 118 FVE 120
           ++ 
Sbjct: 57  YIV 59

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 62.7 bits (153), Expect = 1e-14
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
                  +        +  + + EL  R  D+I +  ++D+  + G L   G  G FPA 
Sbjct: 4   GSSGRRAKALL----DFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRGWFPAK 57

Query: 118 FVE 120
           FVE
Sbjct: 58  FVE 60

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 62.3 bits (152), Expect = 1e-14
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTG 112
                V  V+  +     Y   ++ EL    G +I +  K    DDG+++G     GR G
Sbjct: 3   SGSSGVCFVKALY----DYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFN--GRIG 56

Query: 113 LFPASFVE 120
           +FP+  VE
Sbjct: 57  VFPSVLVE 64

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 62.2 bits (152), Expect = 2e-14
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +     Y    + EL +RVG++I  V K +++GW +G L   GR G+FP +FV+
Sbjct: 3   DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFVK 55

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 62.8 bits (153), Expect = 2e-14
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 44  SSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG 103
            SP  +  N+  P  +   +       +  Y      +L  + GD + V ++    W+K 
Sbjct: 4   GSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKA 62

Query: 104 TLQRTGRTGLFPASFVE 120
               T + G  P+++V 
Sbjct: 63  RSLATRKEGYIPSNYVA 79

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 61.8 bits (151), Expect = 2e-14
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ER      +   S+ EL ++ GD +Y+   K+   W+   L  +G++GL PA F+E
Sbjct: 3   ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 62.3 bits (152), Expect = 2e-14
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLI-YVHKKRDDGWYKGTLQRTGRTGLFPASF 118
              T   + + +       + EL    G +   VH  ++ GW +GTL   G+TGL P ++
Sbjct: 5   SSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENY 62

Query: 119 VE 120
           VE
Sbjct: 63  VE 64

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 62.4 bits (152), Expect = 2e-14
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 76  PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
              +  L LR GD++ V+   D  G+Y G L   G  GL PA  ++
Sbjct: 25  GQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLVPAHLLD 68

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 67.1 bits (162), Expect = 2e-14
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 24  SSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELE 83
           S   TQ      +  ++++  S   ++ ++             R R +  Y      EL 
Sbjct: 387 SYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELS 446

Query: 84  LRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120
            + GD +   +  D+ GW KG L   G+ GL+PA++VE
Sbjct: 447 FKAGDELTKMEDEDEQGWCKGRLDN-GQVGLYPANYVE 483

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 61.5 bits (150), Expect = 3e-14
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVE 120
           +  + I PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP +FV+
Sbjct: 3   DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 57

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 62.0 bits (151), Expect = 3e-14
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 52  NNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT 111
           ++         T +E    +  Y   S  E+ ++ GD++ +    +  W+K  +    R 
Sbjct: 4   SHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQ 61

Query: 112 GLFPASFVE 120
           G  PA++V+
Sbjct: 62  GFVPAAYVK 70

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 61.5 bits (150), Expect = 3e-14
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
              + +  Y      EL    G LI+   K   GW+KG    T     FP+++VE
Sbjct: 8   RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNYVE 61

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 61.5 bits (150), Expect = 3e-14
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 63  TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASFVE 120
           T +   + +  Y    E EL      +I   +K+D GW++G     G+  L FP+++VE
Sbjct: 1   TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYG--GKKQLWFPSNYVE 57

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 61.6 bits (150), Expect = 3e-14
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR---TGRTG 112
            +P+    V  +F    PY  + E +L       I V    D  WY G  Q        G
Sbjct: 2   SEPEVPFKVVAQF----PYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEG 57

Query: 113 LFPASFVE 120
           +FP SFV 
Sbjct: 58  IFPKSFVA 65

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 61.5 bits (150), Expect = 3e-14
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFP 115
                  +  F    PY   ++ EL ++ GD++ +  K   D GW++G L   GR G+FP
Sbjct: 4   GSSGDYCKVIF----PYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFP 57

Query: 116 ASFVE 120
            +FV+
Sbjct: 58  DNFVK 62

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 61.2 bits (149), Expect = 5e-14
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGL-FPASFVE 120
           PT +   + +  Y    E EL      +I   +K++ GW++G     G+  L FP+++VE
Sbjct: 3   PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG--GKKQLWFPSNYVE 60

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 60.7 bits (148), Expect = 5e-14
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
           R R +  Y    + EL  + GD +    + D  GW +G L   G+ GL+PA++VE
Sbjct: 5   RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS-GQLGLYPANYVE 58

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 61.6 bits (150), Expect = 5e-14
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
                + +    +     +   +  EL  + GD+I V    +  W+ G +      G FP
Sbjct: 5   SSGDSIVSAEAVW----DHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGWFP 58

Query: 116 ASFVE 120
           ASFV 
Sbjct: 59  ASFVR 63

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 62.4 bits (151), Expect = 5e-14
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 3/108 (2%)

Query: 15  RPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERF-RCIVP 73
           R +D    +   +     ++ ++ D S  SS +    ++           +ER    I  
Sbjct: 8   RLLDLENIQIPDAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYN 67

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFVE 120
           +  +   +L L++GD++ + +     WY+G L +     G+FP SF+ 
Sbjct: 68  FQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 114

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 61.2 bits (149), Expect = 5e-14
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFP 115
                T   R+     +      EL LR GD++ ++ +   D GW+KG     GR G FP
Sbjct: 4   GSSGGTAVARY----NFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFP 57

Query: 116 ASFVE 120
           +++VE
Sbjct: 58  STYVE 62

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 61.2 bits (149), Expect = 6e-14
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 57  KPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFP 115
            P   P   +  R +  Y  +    L  +  D+I +  K   + W+ G L   G+ G FP
Sbjct: 2   GPLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFP 59

Query: 116 ASFVE 120
              VE
Sbjct: 60  VDHVE 64

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 60.8 bits (148), Expect = 6e-14
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           Y   +  EL  + G  + ++++  D W++G     G  GL P  ++ 
Sbjct: 18  YVGRTARELSFKKGASLLLYQRASDDWWEGRHN--GIDGLIPHQYIV 62

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 61.2 bits (149), Expect = 6e-14
 Identities = 11/55 (20%), Positives = 21/55 (38%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             F  +  Y      +L    G+   + +     W++     TG TG  P+++V 
Sbjct: 7   TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVA 61

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 60.5 bits (147), Expect = 9e-14
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 76  PNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
            + E EL    GD+I V  + D DG+Y G L   G+ GL P++F+E
Sbjct: 25  VDVEAELTFCTGDIITVFGEIDEDGFYYGELN--GQKGLVPSNFLE 68

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 59.9 bits (146), Expect = 1e-13
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E  R +  +  N E +L  + GD++ +  K ++ W+       G+ G+ P  +VE
Sbjct: 4   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVE 57

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 64.5 bits (156), Expect = 1e-13
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 4   NPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPT 63
           N  G     VP     +  E  +         +S+ +S   +   S  +      +  P 
Sbjct: 187 NALGT-TGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPR 245

Query: 64  VRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  + +      PN     +L ++ G  + V +K  +G YK  L   G+ G  P +++ 
Sbjct: 246 LPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYLR 302

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 57.5 bits (138), Expect = 3e-11
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 36  NSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK 95
             + A      +              P   E       +    E +L    G+ + +  K
Sbjct: 119 PDIPALLNHFKMRVLTEASLLAAYKKPI-IEVVVGTFKFTGERETDLPFEQGERLEILSK 177

Query: 96  RDDGWYKGTLQRTGRTGLFPASFVE 120
            +  W++      G TGL PA++V+
Sbjct: 178 TNQDWWEARN-ALGTTGLVPANYVQ 201

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 61.1 bits (148), Expect = 1e-13
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 51  PNNRKPKPQPVPTVRERFRCIVPYPP------NSEYELELRVGDLIYVHKKRD-DGWYKG 103
             +     Q              Y P      N E EL L  G  +YV+   D DG+Y+G
Sbjct: 3   SGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEG 62

Query: 104 TLQRTGRTGLFPASFVE 120
            L   G+ GL P++FV+
Sbjct: 63  EL-LDGQRGLVPSNFVD 78

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 60.0 bits (146), Expect = 1e-13
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E F  I  Y    E +L    G+ I + ++    W+ G     G  G  PA+ V 
Sbjct: 8   EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANHVG 60

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 60.0 bits (146), Expect = 1e-13
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ++R      +   S+ EL ++ GD +Y+   K+   W+   L  +G++GL PA F+E
Sbjct: 6   KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 60.1 bits (146), Expect = 2e-13
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 13/83 (15%)

Query: 40  ASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR--D 97
            SS SS +               +   + R +  Y   +  EL L   ++I V      D
Sbjct: 1   GSSGSSGLNDLKE---------SSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMD 51

Query: 98  DGWYKGTLQRTGRTGLFPASFVE 120
             W  G      + G  P +++E
Sbjct: 52  SDWLMGERG--NQKGKVPITYLE 72

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 59.6 bits (145), Expect = 2e-13
 Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
              +  ++   +  Y P +  +L+LR GD  ++ ++ +  W++    + G+ G  P+++V
Sbjct: 3   MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYV 61

Query: 120 E 120
            
Sbjct: 62  T 62

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 63.9 bits (154), Expect = 2e-13
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 3/118 (2%)

Query: 3   VNPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVP 62
           V    +   +         S       H + +  +     A S  +              
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSG-SPGAAITPLPSTQNG 236

Query: 63  TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            V  +           +  L L VGD++ V +   +G ++G +   GR GLFP + V+
Sbjct: 237 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVK 292

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 52.3 bits (124), Expect = 3e-09
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 51  PNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 110
            +   P         E  R +  +P N   +L  + G+++ + +K ++ W+     + GR
Sbjct: 111 GSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARN-KDGR 169

Query: 111 TGLFPASFVESF 122
            G+ P  +VE  
Sbjct: 170 VGMIPVPYVEKL 181

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 59.9 bits (145), Expect = 2e-13
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 58  PQPVPTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ----RTGRTG 112
              VP    + R +  +   +    L +R GD+I V ++  DG +KG +      T R G
Sbjct: 11  SGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIG 70

Query: 113 LFPASFVE 120
            FP   VE
Sbjct: 71  YFPPGIVE 78

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 60.2 bits (146), Expect = 3e-13
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPASFVE 120
           +      EL   VG+ +++    +  W+      R G  GL P  FV 
Sbjct: 14  FKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS 61

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 58.7 bits (143), Expect = 3e-13
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
             + +  Y    + E+ +  GD I +  +    GW K     TG TGL P +++ 
Sbjct: 3   ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 60.9 bits (147), Expect = 3e-13
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPA 116
           P    T + R+     +      EL L+ GD+I + +KK   GW++G +   GR G FP+
Sbjct: 2   PGTFGTAKARY----DFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--GRIGWFPS 55

Query: 117 SFVE 120
           ++VE
Sbjct: 56  NYVE 59

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 58.9 bits (143), Expect = 4e-13
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 48  ASDPNNRKPKPQPVPTVRERFRCIV--PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGT 104
            S  ++ +   +      +   CI    +      EL  R GD++ +     +  WY+  
Sbjct: 1   GSSGSSGRMPTRRWAPGTQ---CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVK 57

Query: 105 LQRTGRTGLFPASFVE 120
              +G+ GL  A  + 
Sbjct: 58  HHTSGQEGLLAAGALR 73

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 57.9 bits (141), Expect = 7e-13
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFVE 120
            +   +  +      +L  R GD+I + KK D  + W+ G +   GR G+FPA++VE
Sbjct: 4   PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYVE 58

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 58.1 bits (141), Expect = 7e-13
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
                    +        +    +  L     D+I V ++  + W+ G +   G  G FP
Sbjct: 5   SSGVENLKAQALC----SWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRGWFP 57

Query: 116 ASFVE 120
            S+V+
Sbjct: 58  KSYVK 62

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 58.3 bits (141), Expect = 7e-13
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             +     Y    + E+    G  + V +K++ GW+          G  P+ ++ 
Sbjct: 9   TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG--ELEGWAPSHYLV 61

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 58.0 bits (141), Expect = 8e-13
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E +  + PY      +L    G+ I V +K D  W+ G++    R+G+FP+++V+
Sbjct: 9   EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVK 60

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 58.2 bits (141), Expect = 9e-13
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 52  NNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRT 111
            +  P P P     +    +  YP         R G+ + V    + GW+K     TGR 
Sbjct: 4   GSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRE 62

Query: 112 GLFPASFVE 120
              P   V 
Sbjct: 63  SYIPGICVA 71

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 58.3 bits (141), Expect = 1e-12
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 63  TVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVE 120
           +    +R + P+   +  E+    GD+I V +K   + GW  G+ Q  G  G FP ++VE
Sbjct: 3   SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVE 60

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 57.7 bits (140), Expect = 1e-12
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 55  KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGL 113
           +           ++     +   ++ EL  + GD++ V +++ D  WYK  L   G+ G 
Sbjct: 3   RRASVGSMEAIAKY----DFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGF 56

Query: 114 FPASFVE 120
            P +++E
Sbjct: 57  IPKNYIE 63

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 57.8 bits (140), Expect = 1e-12
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 41  SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD-- 98
           SS SS      + R         V   +     +      +L  + GD I V  K D   
Sbjct: 2   SSGSSG-----HERVGNLNQPIEVTALY----SFEGQQPGDLNFQAGDRITVISKTDSHF 52

Query: 99  GWYKGTLQRTGRTGLFPASFVE 120
            W++G L+  G+TG+FPA++V 
Sbjct: 53  DWWEGKLR--GQTGIFPANYVT 72

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 57.4 bits (139), Expect = 1e-12
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT------GRTGLFPASF 118
           +E    +  Y   S  E+ ++ GD++ +    +  W+K  ++ T       R G  PA++
Sbjct: 1   KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAY 60

Query: 119 VE 120
           V+
Sbjct: 61  VK 62

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 57.3 bits (139), Expect = 1e-12
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLF 114
                  R  +       P+   EL    GD++ + ++     +GW+K  L   GR GL 
Sbjct: 4   GSSGLLARALY----DNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLA 57

Query: 115 PASFVE 120
           PA+ ++
Sbjct: 58  PANRLQ 63

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 57.4 bits (139), Expect = 2e-12
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 49  SDPNNRKPKPQPVPTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-----DGWYK 102
           S+  +    P  +   R  +     + P N E E+ L+ GDL+ +  K+D       W+K
Sbjct: 2   SEFGSEPIDPSKLEFARALY----DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57

Query: 103 GTLQRTGRTGLFPASFVE 120
               + G  G  P +++E
Sbjct: 58  VRT-KNGNIGYIPYNYIE 74

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 45  SPVASDPNNRKPKPQPVPTVRERF----RCIVPYPPNSEYELELRVGDLIYVHKKRD-DG 99
           S  +S  +    +  P       F      + P P  +E EL  + G +I V+  +D DG
Sbjct: 2   SSGSSGTDPGAEEL-PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG 60

Query: 100 WYKGTLQRTGRTGLFPASFVE 120
           +Y+G      R GL P + V 
Sbjct: 61  FYRGET--CARLGLIPCNMVS 79

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 56.2 bits (136), Expect = 3e-12
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E+ ++ GD++ +    +  W+K  +    R G  PA++V+
Sbjct: 5   EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVK 42

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 59.3 bits (143), Expect = 4e-12
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 27  STQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRV 86
                    N L     S+ V+ +        + VP      + +  + P  + EL  R 
Sbjct: 120 LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRR 179

Query: 87  GDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           GD I+V    D  W+KG     G+TG+FP ++V 
Sbjct: 180 GDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVT 211

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120
            +   ++ EL  + GD++ V  +  D  WYK  L   G+ G  P +++E
Sbjct: 8   DFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIE 54

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 58.6 bits (141), Expect = 5e-12
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 58  PQPVPTVRERF-RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFP 115
                  +ER    I  +  +   +L L++GD++ + +     WY+G L +     G+FP
Sbjct: 9   APWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFP 67

Query: 116 ASFVE 120
            SF+ 
Sbjct: 68  KSFIH 72

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 56.4 bits (136), Expect = 7e-12
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 49  SDPNNRKPKPQPVPTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-----DGWYK 102
           S+  +    P  +   R  +     + P N E E+ L+ GDL+ +  K+D       W+K
Sbjct: 2   SEFGSEPIDPSKLEFARALY----DFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWK 57

Query: 103 GTLQRTGRTGLFPASFVE 120
               + G  G  P +++E
Sbjct: 58  VRT-KNGNIGYIPYNYIE 74

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 59.6 bits (143), Expect = 7e-12
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 29  QHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGD 88
                +                 +              R   +  +  NS+ EL  + GD
Sbjct: 138 SPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGD 197

Query: 89  LIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +I++  + +  W +GT++  G TG+FP SFV+
Sbjct: 198 VIFLLSRINKDWLEGTVR--GATGIFPLSFVK 227

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 55.5 bits (134), Expect = 7e-12
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           PY      E+ ++ GD++ +    +  W+K  +    R G  PA++V+
Sbjct: 8   PYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVK 52

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 55.0 bits (133), Expect = 1e-11
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRD---DGWYKGTLQRTGRTGLFPASFVE 120
                S  EL  R GD++ V ++     DGW+  +L   GR G+ P + ++
Sbjct: 11  DNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRLK 59

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 56.5 bits (136), Expect = 1e-11
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 74  YPPNSEYELELRVGDLIYVHKKRDDGWYKG-TLQRTGRTGLFPASFVE 120
           +    + EL++  G+ + +    D  W+    + R G  GL P S+V 
Sbjct: 12  FKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 55.5 bits (134), Expect = 1e-11
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 48  ASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR 107
           +S  +    +             +  Y  N   EL LR  +   +    +  W++    R
Sbjct: 2   SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD-R 60

Query: 108 TGRTGLFPASFVE 120
            G  G  P+S++ 
Sbjct: 61  NGHEGYVPSSYLV 73

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 55.5 bits (134), Expect = 1e-11
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFV 119
            +       +  Y  ++   L    GDLI +      + GW  G+    GR+GLFPA  V
Sbjct: 5   SSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG--GRSGLFPADIV 62

Query: 120 E 120
           +
Sbjct: 63  Q 63

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 55.1 bits (133), Expect = 1e-11
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 75  PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFVE 120
           P N E E+ L+ GDL+ +  K+D       W+K    + G  G  P +++E
Sbjct: 18  PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 67

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 54.2 bits (131), Expect = 2e-11
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P        +  Y P+ + +L    G+ + + ++  + W+K     TG+ G  P +FV 
Sbjct: 3   PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVA 60

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 54.2 bits (131), Expect = 2e-11
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E    +  +     ++L L  G    + +K D  W++    + G  G  P+++V 
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVT 56

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 53.7 bits (129), Expect = 3e-11
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            Y    E EL L  G  + V +   DGW++G+    G+ G FP+++V 
Sbjct: 9   AYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN--GQIGWFPSNYVL 54

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 53.5 bits (129), Expect = 4e-11
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG---RTGLF 114
            +    +  ++  +  +   ++ EL  R GD+ +V +K +  W+   L   G     G  
Sbjct: 3   SRDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYV 62

Query: 115 PASFVE 120
           P +++ 
Sbjct: 63  PHNYLA 68

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 53.4 bits (129), Expect = 5e-11
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPA 116
            Q              +   +E +L    GD++ +     D  WYK    + GR G+ PA
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPA 62

Query: 117 SFVE 120
           ++V+
Sbjct: 63  NYVQ 66

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 53.2 bits (128), Expect = 6e-11
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT--GRTGLFPASFV 119
             +++ +  I  Y  + E     + G  + V ++  +GW+   +        G  P++++
Sbjct: 7   GNLKDVYVSIADYEGDEE-TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYL 65

Query: 120 ES 121
           E 
Sbjct: 66  EK 67

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 53.6 bits (129), Expect = 7e-11
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            Y   S  +L  + GD + V ++    W+K     T + G  P+++V 
Sbjct: 11  DYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVA 57

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 55.6 bits (133), Expect = 8e-11
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 7   GKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRE 66
             +I       D   +        +     +L        +         K   +  V  
Sbjct: 64  HYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            F     +    E +L    G+ + +  K +  W++      G TGL PA++V+
Sbjct: 124 TF----KFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPANYVQ 172

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 52.6 bits (127), Expect = 8e-11
 Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +  + +  +   +  EL +   +++ V +     W   +  R+G+ G  P + + 
Sbjct: 8   KYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNILG 60

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 53.1 bits (128), Expect = 9e-11
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 81  ELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVE 120
           EL +  G++I V       GW +G   + G  GL P  +VE
Sbjct: 26  ELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLVPTDYVE 65

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 52.5 bits (126), Expect = 1e-10
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 81  ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E+ ++ GD++ +    +  W+K  +    R G  PA++V+
Sbjct: 7   EVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVK 44

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 51.9 bits (125), Expect = 2e-10
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +   + + +  +   +  EL +  G+ + V       W        GR+G  P++ +E
Sbjct: 4   GSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKN--EAGRSGYIPSNILE 60

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 49  SDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD----GWYKGT 104
           S  +           V    R    +   S+ E+  R GD++ +  K       GW   +
Sbjct: 3   SGSSGTNWASGEDDHVV--ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60

Query: 105 LQRTGRTGLFPASFVE 120
           L     TGL PA++V+
Sbjct: 61  L-DGQTTGLIPANYVK 75

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 51.2 bits (123), Expect = 3e-10
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 62  PTVRERFRCIVPYPPNSE--YELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
                + + + PY  + +  YE+     +++ V    +  W+K      G TG+ P+++V
Sbjct: 2   DNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRAN-GETGIIPSNYV 59

Query: 120 E 120
           +
Sbjct: 60  Q 60

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 51.3 bits (123), Expect = 4e-10
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-------GRTGLFPASF 118
           + F  +  Y   +  +L  R GD + V     +GW+                 G  P+++
Sbjct: 8   QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67

Query: 119 VE 120
           V 
Sbjct: 68  VA 69

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 51.2 bits (123), Expect = 5e-10
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 46  PVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL 105
           P+   P + +   Q           +  Y  N   EL LR  +  Y+    +  W++   
Sbjct: 3   PLPPTPEDNRRSFQEPE--ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD 60

Query: 106 QRTGRTGLFPASFVE 120
            + G  G  P+S++ 
Sbjct: 61  -KNGHEGYAPSSYLV 74

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 50.8 bits (122), Expect = 5e-10
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLF 114
                +       + +  Y  +   EL +   +++ V +  D + W K   +  G+ G  
Sbjct: 4   GSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV-GQVGYV 62

Query: 115 PASFVE 120
           P  +++
Sbjct: 63  PEKYLQ 68

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 50.0 bits (120), Expect = 9e-10
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 69  RCIV--PYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
            C+    +  +SE  + +  G+ + + ++   DGW +   +  G  G  P S++ 
Sbjct: 9   HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSYLR 62

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 50.0 bits (120), Expect = 9e-10
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 59  QPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPA 116
           Q    +    + + P+   +E EL    G+ + V +K   D  W+K    R G+ GL P 
Sbjct: 1   QGSRVL-HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPK 58

Query: 117 SFVE 120
           ++V 
Sbjct: 59  NYVV 62

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 49.9 bits (120), Expect = 1e-09
 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASFVE 120
           F  +  +  + +  L +  G+ + V     +G W +         G  P++++ 
Sbjct: 8   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYIT 59

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 49.8 bits (119), Expect = 2e-09
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGL 113
                   V    + + P+   +E EL    G+ + V +K   D  W+K    R G+ GL
Sbjct: 8   LSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGL 66

Query: 114 FPASFVE 120
            P ++V 
Sbjct: 67  VPKNYVV 73

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 48.8 bits (116), Expect = 3e-09
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 49  SDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQR 107
           +    R     P   V + +  I P P      L L  GD++ + K   +  W++G    
Sbjct: 2   AQDKKRNELGLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTA 61

Query: 108 TGRTGLFPASFVE 120
           T   G FP + V 
Sbjct: 62  TNEVGWFPCNRVH 74

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 48.1 bits (115), Expect = 7e-09
 Identities = 7/69 (10%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRT 111
                     + +  +  +   +  EL +     + + + +D      W+   +   G+ 
Sbjct: 4   GSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV--NGKK 61

Query: 112 GLFPASFVE 120
           G  P++++ 
Sbjct: 62  GYVPSNYIR 70

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 47.5 bits (113), Expect = 1e-08
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 41  SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 100
               +P  +             T          Y    + EL+++  + +++       W
Sbjct: 7   PPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-W 65

Query: 101 YKGTLQRTGRTGLFPASFVE 120
           ++       RTG  P+++VE
Sbjct: 66  WRVR-NAANRTGYVPSNYVE 84

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 47.3 bits (112), Expect = 1e-08
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASF 118
           P   V + +  I P P      L L  GD++ + K   +  W++G    T   G FP + 
Sbjct: 5   PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 64

Query: 119 VE 120
           V 
Sbjct: 65  VH 66

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 45.8 bits (109), Expect = 4e-08
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
                         Y    E EL+++  + +++       W++       +TG  P+++V
Sbjct: 2   STMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-WWRVR-NSMNKTGFVPSNYV 59

Query: 120 E 120
           E
Sbjct: 60  E 60

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 45.3 bits (108), Expect = 5e-08
 Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ++  +    +   +  EL +   D++ +   R   W+K     +G +G  P + ++
Sbjct: 1   KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVR-NASGDSGFVPNNILD 54

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 45.5 bits (108), Expect = 6e-08
 Identities = 10/50 (20%), Positives = 21/50 (42%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL 105
            K     T +E    +  Y   S  E+ ++ GD++ +    +  W+K  +
Sbjct: 12  VKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 45.3 bits (108), Expect = 6e-08
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
                 Y    + EL+++  + +++       W++       RTG  P+++VE
Sbjct: 7   VIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVR-NAANRTGYVPSNYVE 57

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 48.0 bits (113), Expect = 6e-08
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 51  PNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGR 110
            + +           E  R +  +  N E +L  + GD++ +  K ++ W+       G+
Sbjct: 122 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGK 180

Query: 111 TGLFPASFVESF 122
            G+ P  +VE +
Sbjct: 181 RGMIPVPYVEKY 192

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 44.6 bits (106), Expect = 1e-07
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
               +   C   +   +  EL ++  D++ V       W+K      G+ G  P + + 
Sbjct: 5   SGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRD-PAGQEGYVPYNILT 61

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 37  SLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR 96
           ++ +S   S                         +  +    + EL  + GD+I V    
Sbjct: 2   AMSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDAT 61

Query: 97  DDGWYKGTLQRTGRTGLFPASFVESF 122
           +  W+ G +      G FPASFV   
Sbjct: 62  NREWWWGRV--ADGEGWFPASFVRLR 85

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 2/118 (1%)

Query: 4   NPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPT 63
           N +G      P         S+   +          A        +  +      +  P 
Sbjct: 22  NVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPL 81

Query: 64  VRERFRCIV--PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
                  +    Y   +E +L  + G+ + +    +  W+      TG+TG  P+++V
Sbjct: 82  AGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 13/130 (10%)

Query: 4   NPNGKMIHYVPRPVDAVVSESSSSTQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPT 63
                               ++S    +   +  ++   A+     +  +   +    P 
Sbjct: 81  ASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPG 140

Query: 64  VRERFRCIVPYPPNSEYELELRVGDLIYVHK-----KRDDGWYKGTLQR--------TGR 110
              + +    Y      EL+L+ GD++ V       ++D+GW  G  +            
Sbjct: 141 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKC 200

Query: 111 TGLFPASFVE 120
            G+FP +F E
Sbjct: 201 RGVFPENFTE 210

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 28  TQHNHRKSNSLDASSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVG 87
           ++   R   S       S  A   +       P       F  +  +  + +  L +  G
Sbjct: 6   SEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKG 65

Query: 88  DLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
           + + V     +G +    Q     G  P++++
Sbjct: 66  EKLRVLGYNHNGEWC-EAQTKNGQGWVPSNYI 96

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 13/72 (18%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTL------QRT 108
             P+            Y       L +  G ++YV  K   R   ++ G++         
Sbjct: 19  SHPISMAVALQD----YMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLA 74

Query: 109 GRTGLFPASFVE 120
            R G FP+S V 
Sbjct: 75  ARLGYFPSSIVR 86

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 56  PKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFP 115
             P   P        +  Y P+ + +L    G+ + + ++    W+K     TG+ G  P
Sbjct: 3   SNPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIP 61

Query: 116 ASF 118
            +F
Sbjct: 62  FNF 64

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 58  PQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPAS 117
            Q              +   +E +L    GD++ +     D  +     + GR G+ PA+
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63

Query: 118 FVE 120
           +V+
Sbjct: 64  YVQ 66

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
             +R     +  Y      +L  + GD + V ++    W+K     T + G  P+++V
Sbjct: 5   SGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV 61

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           +   +  Y   ++ EL    G +I V  K D  W+KG +  +G+ GLFP+++V+ 
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKL 56

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655

 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 76  PNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFV 119
                 L    GDLI +         + GW  G  +RT + G FP   V
Sbjct: 587 GEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCV 635

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 73  PYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV 119
            Y   +E +L  + G+ + +    +  W+      TG+TG  P+++V
Sbjct: 10  DYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.86
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.85
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.81
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.8
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.8
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.8
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.8
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.8
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.79
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.79
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.79
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.79
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.79
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.79
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.79
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.79
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.78
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.78
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.78
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.78
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.78
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.78
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.78
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.78
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.78
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.78
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.78
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.78
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.78
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.78
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.78
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.78
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.78
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.78
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.78
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.78
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.78
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.78
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.78
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.78
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.78
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.77
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.77
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.77
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.77
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.77
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.77
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.77
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.77
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.77
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.77
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.77
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.77
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.77
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.77
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.77
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.77
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.77
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.77
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.77
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.77
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.77
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.77
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.77
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.77
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.77
3u23_A	65	CD2-associated protein; structural genomics, struc	99.77
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.77
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.77
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.77
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.77
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.77
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.77
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.77
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.77
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.77
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.76
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.76
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.76
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.76
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.76
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.76
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.76
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.76
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.76
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.76
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.76
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.76
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.76
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.76
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.76
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.76
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.76
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.76
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.76
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.76
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.76
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.76
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.76
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.76
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.76
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.76
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.76
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.75
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.75
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.75
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.75
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.75
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.75
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.75
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.75
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.75
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.75
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.75
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.75
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.75
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.75
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.75
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.75
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.75
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.75
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.75
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.74
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.74
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.74
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.74
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.74
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.74
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.74
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.74
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.74
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.74
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.74
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.74
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.74
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.74
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.74
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.74
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.73
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.73
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.73
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.73
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.73
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.73
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.73
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.73
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.73
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.72
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.72
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.72
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.72
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.72
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.72
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.71
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.71
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.7
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.7
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.7
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.7
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.7
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.69
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.69
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.69
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.68
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.67
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.67
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.67
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.66
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.64
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.63
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.62
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.61
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.6
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.59
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.59
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.57
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.57
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.55
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.54
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.53
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.52
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.52
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.5
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.5
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.48
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.48
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.48
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.48
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.48
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.2
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.44
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.16
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.43
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.42
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.42
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.39
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.35
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	99.32
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	99.32
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	99.26
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	99.24
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	99.09
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	99.05
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.96
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.94
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.92
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.89
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.82
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.73
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.6
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	98.28
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	98.09
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	96.61
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	96.59
2kt8_A	76	Probable surface protein; SH3 family, structural g	96.38
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	96.06
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	95.13
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	92.87
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	92.84
2hbw_A	235	NLP/P60 protein; NLP/P60 family protein, structura	88.67
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	84.2

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.86  E-value=1.9e-21  Score=110.33  Aligned_cols=58  Identities=40%  Similarity=0.769  Sum_probs=54.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|++.++|++||||++||++|
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            4579999999999999999999999999999999999999977899999999999985

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.85  E-value=5.8e-22  Score=110.70  Aligned_cols=56  Identities=32%  Similarity=0.694  Sum_probs=52.0

Q ss_pred             cEEEEeeeCCCCCCCc-eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYE-LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~e-L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+|+|+|||+++.++| |+|++||+|.|+++.++|||.|++. +|++||||++||+.|
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~-~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKE-DGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECT-TSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeC-CCCEEEEcHHHEEEC
Confidence            5799999999998887 9999999999999999999999975 789999999999976

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.81  E-value=6.4e-20  Score=101.77  Aligned_cols=56  Identities=29%  Similarity=0.475  Sum_probs=52.5

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++|+|||.++..+||+|++||+|.|+++.+++||.|++.++|+.|+||++||+.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            68999999999999999999999999999999999999965699999999999875

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.80  E-value=2.3e-19  Score=103.97  Aligned_cols=57  Identities=26%  Similarity=0.448  Sum_probs=52.6

Q ss_pred             cccEEEEeeeCCCC--CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~--~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.+.  ..+||+|++||+|.|+++.+++||.|+.  .|++||||++||+.+
T Consensus         8 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   66 (73)
T 2ebp_A            8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLL--NNKVGTFKFIYVDVL   66 (73)
T ss_dssp             CSEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEEC--SSCEEEECSTTEEEC
T ss_pred             cceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEE--CCCEEEEeHHHEEEC
Confidence            45689999999976  8999999999999999999999999988  899999999999875

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.80  E-value=1.5e-19  Score=101.58  Aligned_cols=57  Identities=37%  Similarity=0.638  Sum_probs=53.3

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.++.++||+|++||+|.|+++.+++||.|++..+|+.|+||++||+.+
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~   60 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   60 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEEC
Confidence            479999999999999999999999999999999999999765899999999999875

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.80  E-value=1.8e-19  Score=100.61  Aligned_cols=57  Identities=28%  Similarity=0.652  Sum_probs=53.4

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|+.||||++||+.|
T Consensus         4 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            4 GSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL--RGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CCcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCEEEEEcHHHEEEC
Confidence            346899999999999999999999999999999999999999  899999999999975

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.80  E-value=2.3e-19  Score=99.84  Aligned_cols=56  Identities=34%  Similarity=0.695  Sum_probs=52.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|+.||||++||+.|
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEEC
Confidence            45899999999999999999999999999999999999998  899999999999976

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.80  E-value=2.8e-19  Score=101.33  Aligned_cols=58  Identities=36%  Similarity=0.617  Sum_probs=53.7

Q ss_pred             ccEEEEeeeCCC-CCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPP-NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~-~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.+ +..+||+|++||+|.|+++.+++||.|++..+|+.||||++||+.+
T Consensus         5 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   63 (65)
T 2j05_A            5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   63 (65)
T ss_dssp             TCEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEEC
Confidence            457999999999 9999999999999999999999999999766899999999999875

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.79  E-value=2.7e-19  Score=102.28  Aligned_cols=58  Identities=29%  Similarity=0.495  Sum_probs=53.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCC---cEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG---RTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g---~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|++..++   ++|+||++||+.+
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            458999999999999999999999999999999999999996556   9999999999874

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.79  E-value=3.7e-19  Score=102.92  Aligned_cols=58  Identities=21%  Similarity=0.475  Sum_probs=54.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|++.+.|+.||||++||+++
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            4589999999999999999999999999999999999999977899999999999875

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.79  E-value=4.4e-19  Score=99.62  Aligned_cols=58  Identities=21%  Similarity=0.469  Sum_probs=52.5

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++. ++||.|++...|+.||||++||+.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TTCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            356899999999999999999999999999986 4999999855899999999999875

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.79  E-value=3.7e-19  Score=103.11  Aligned_cols=58  Identities=28%  Similarity=0.617  Sum_probs=53.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.++|||.|++.+.|+.||||++||+.+
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~   62 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   62 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEEC
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            4689999999999999999999999999999999999999975699999999999864

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=9.4e-19  Score=102.57  Aligned_cols=57  Identities=47%  Similarity=0.880  Sum_probs=53.2

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~--~g~~G~~P~~yv~~~   72 (78)
T 2ed0_A           16 YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM--NGVTGLFPGNYVESI   72 (78)
T ss_dssp             CSEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEE--TTEEEEEETTSEEEC
T ss_pred             cCEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEE--CCcEEEeChHHEEEc
Confidence            356899999999999999999999999999999999999997  899999999999875

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.79  E-value=3.7e-19  Score=100.48  Aligned_cols=57  Identities=37%  Similarity=0.802  Sum_probs=52.5

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.  ++|||.|+.  .|++||||++||+.|
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGEL--NGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SSEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEE--CCeEEEEeHHHEEEC
Confidence            356899999999999999999999999999985  789999998  899999999999875

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=5.4e-19  Score=101.02  Aligned_cols=56  Identities=29%  Similarity=0.660  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.|+||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF--NGQKGLVPCNYLEPV   62 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEE--TTEEEEECSTTEEEC
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEe--CCCEEEeehHHeEEC
Confidence            46899999999999999999999999999999999999987  899999999999875

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.79  E-value=3.7e-19  Score=100.93  Aligned_cols=55  Identities=38%  Similarity=0.774  Sum_probs=51.7

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~   56 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEH--HGRLGIFPANYVEVL   56 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEE--TTEEEEECGGGEEEC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEE--CCcEEEEehhhEEEc
Confidence            4689999999999999999999999999999999999997  899999999999864

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.78  E-value=4e-19  Score=98.49  Aligned_cols=55  Identities=29%  Similarity=0.623  Sum_probs=51.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.|++  .|+.||||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   56 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAPM   56 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEE--CCeEEEeeHHHeEEc
Confidence            4789999999999999999999999999999999999999  899999999999875

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.78  E-value=4.3e-19  Score=99.05  Aligned_cols=56  Identities=34%  Similarity=0.743  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKIL   59 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEE--CCCEEEechHHEEEC
Confidence            35799999999999999999999999999999999999998  899999999999875

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.78  E-value=4.6e-19  Score=98.25  Aligned_cols=55  Identities=35%  Similarity=0.725  Sum_probs=52.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCcEEEeeHHHEEEc
Confidence            4799999999999999999999999999998999999998  899999999999875

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.78  E-value=3.7e-19  Score=104.78  Aligned_cols=58  Identities=26%  Similarity=0.526  Sum_probs=52.9

Q ss_pred             CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCC-eEEEEEcCCCcEEEecCCCeEEC
Q psy9679          63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG-WYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~g-W~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....+++|+|||.++..+||+|++||+|.|+++.+++ ||.|+.  .|+.||||++||+.+
T Consensus         8 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   66 (80)
T 2i0n_A            8 EFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQL--NGKEGSFPVDHVEIL   66 (80)
T ss_dssp             CCCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             CCCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEE--CCcEEEechHHEEEC
Confidence            3456899999999999999999999999999998777 999997  899999999999863

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.78  E-value=3.6e-19  Score=98.69  Aligned_cols=54  Identities=35%  Similarity=0.741  Sum_probs=51.4

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++|+|||.++.++||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   56 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQI--NGRRGLFPDNFVREI   56 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEE--CCeEEEEehHHeEEc
Confidence            589999999999999999999999999999999999998  899999999999875

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.78  E-value=5e-19  Score=101.23  Aligned_cols=56  Identities=30%  Similarity=0.738  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   58 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMI--HGESGFFPINYVEVI   58 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEE--TTEEEEEEGGGEEES
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEeeHHHEEEc
Confidence            35799999999999999999999999999999999999998  899999999999864

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.78  E-value=6.1e-19  Score=99.80  Aligned_cols=56  Identities=32%  Similarity=0.577  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            9 GITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC--KGRYGLFPANYVELR   64 (65)
T ss_dssp             CSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             ceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEE--CCcEEEEehHHeEEC
Confidence            45799999999999999999999999999999999999997  899999999999875

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.78  E-value=4.6e-19  Score=102.11  Aligned_cols=58  Identities=36%  Similarity=0.629  Sum_probs=53.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|+|.++..+||+|++||+|.|+.+.++|||.|++...|+.|+||++||+.+
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~   63 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   63 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEEC
Confidence            4579999999999999999999999999999999999999765899999999999874

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=8.9e-19  Score=100.11  Aligned_cols=56  Identities=30%  Similarity=0.765  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKI--QDRIGFFPANFVQRL   62 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEEC--SSCEEEEETTTEEEC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEehHHeEEC
Confidence            45899999999999999999999999999998999999996  899999999999875

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.78  E-value=3.6e-19  Score=98.35  Aligned_cols=56  Identities=25%  Similarity=0.672  Sum_probs=51.6

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.|++. .|+.||||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeC-CCCEEEEeHHHEEEC
Confidence            47899999999999999999999999999988999999966 799999999999875

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.78  E-value=7.3e-19  Score=97.98  Aligned_cols=57  Identities=30%  Similarity=0.612  Sum_probs=53.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+++ .+++||.|++.+.++.||||++||+.|
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            579999999999999999999999999998 489999999976899999999999875

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.78  E-value=6.6e-19  Score=97.57  Aligned_cols=56  Identities=32%  Similarity=0.710  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||+++..+||+|++||+|.|+++.+++||.+++  .++.||||++||+.|
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEEC
Confidence            35799999999999999999999999999999999999999  899999999999975

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.78  E-value=3.8e-19  Score=98.83  Aligned_cols=57  Identities=28%  Similarity=0.626  Sum_probs=52.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.|++.++|+.||||++||+.|
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            468999999999999999999999999999999999999975589999999999875

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.78  E-value=6.2e-19  Score=97.64  Aligned_cols=55  Identities=27%  Similarity=0.623  Sum_probs=51.7

Q ss_pred             EEEEeeeC-CCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          67 RFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        67 ~~~al~dy-~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .++|+||| .++..+||+|++||+|.|+++.++|||.|++.++|+.||||++||++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            68999999 89999999999999999999999999999997569999999999986

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=100.97  Aligned_cols=58  Identities=34%  Similarity=0.806  Sum_probs=53.2

Q ss_pred             CcccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          63 TVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....+++|+|||.++..+||+|++||+|.|+.+.  ++|||.|+.  .|+.||||++||+.+
T Consensus         7 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   66 (73)
T 2k9g_A            7 KSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL   66 (73)
T ss_dssp             SSCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CCccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEE--CCeEEEEchHHEEEC
Confidence            3456899999999999999999999999999985  889999998  899999999999874

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=2.8e-19  Score=103.05  Aligned_cols=58  Identities=34%  Similarity=0.584  Sum_probs=53.5

Q ss_pred             ccEEEEeeeCCC-CCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPP-NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~-~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.+ +..+||+|++||+|.|+++.+++||.|++...|+.|+||++||+.+
T Consensus         7 ~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   65 (71)
T 2gqi_A            7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   65 (71)
T ss_dssp             CCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEEC
T ss_pred             CCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            357999999999 9999999999999999999999999999766899999999999875

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=5.3e-19  Score=106.27  Aligned_cols=59  Identities=32%  Similarity=0.607  Sum_probs=53.9

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++.+++||.|++.++|+.||||++||+.+
T Consensus        16 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   74 (90)
T 2yup_A           16 EYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVS   74 (90)
T ss_dssp             GSEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEE
T ss_pred             cceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            35689999999999999999999999999999899999999965699999999999863

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=1.9e-18  Score=103.41  Aligned_cols=56  Identities=32%  Similarity=0.550  Sum_probs=51.5

Q ss_pred             ccEEEEeeeCCCC--CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~--~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.+.  ..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~   73 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIF   73 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEEC--SSCEEEECTTTEEEC
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEe--CCCEEEEehHHeEEC
Confidence            4589999999954  9999999999999999999999999987  899999999999875

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=1.2e-18  Score=99.96  Aligned_cols=58  Identities=40%  Similarity=0.766  Sum_probs=54.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|++.++++.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV   64 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEET
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEEC
Confidence            4689999999999999999999999999999999999999976799999999999874

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.78  E-value=1.2e-18  Score=99.52  Aligned_cols=56  Identities=32%  Similarity=0.705  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI--NGVSGIFPASSVEVI   62 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEE--TTEEEEEESSSEETT
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEE--CCcEEEeehHHEEEc
Confidence            45899999999999999999999999999998999999997  899999999999864

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.78  E-value=3.1e-19  Score=100.24  Aligned_cols=56  Identities=30%  Similarity=0.658  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   60 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEEC--SSCEEEECGGGCCCS
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEeHHHEEEC
Confidence            45899999999999999999999999999999999999996  899999999999864

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.78  E-value=6.3e-19  Score=99.96  Aligned_cols=57  Identities=25%  Similarity=0.656  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.. .|+.||||++||+.+
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   59 (65)
T 1b07_A            3 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKY   59 (65)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEEC
T ss_pred             ceEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEEC-CCCEEEEChHHEeec
Confidence            357999999999999999999999999999999999999965 799999999999864

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=99.42  Aligned_cols=57  Identities=37%  Similarity=0.758  Sum_probs=53.1

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++.+++||.|++  .++.||||++||+.+
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 1x2k_A            6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVAEQ   62 (68)
T ss_dssp             CSEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEES--SSCEEEEETTTEEEC
T ss_pred             CcEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEE--CCcEEEEehHHeEEc
Confidence            356899999999999999999999999999999999999998  899999999999874

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.78  E-value=6.9e-19  Score=100.92  Aligned_cols=55  Identities=36%  Similarity=0.838  Sum_probs=51.5

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+.+.  +++||.|+.  .|+.||||++||+.+
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~~P~~yV~~~   59 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL   59 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEE--CCcEEEecHHHEEEC
Confidence            5799999999999999999999999999986  889999998  899999999999864

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.78  E-value=6.5e-19  Score=99.32  Aligned_cols=58  Identities=41%  Similarity=0.755  Sum_probs=53.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+..+.|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            6 LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             --CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CEEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            4579999999999999999999999999999999999999987899999999999875

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.77  E-value=5.8e-19  Score=102.95  Aligned_cols=59  Identities=29%  Similarity=0.582  Sum_probs=53.0

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcC-CCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|++.. .++.||||++||+.+
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~   68 (76)
T 2ed1_A            9 KVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL   68 (76)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEEC
T ss_pred             CCeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEEC
Confidence            35689999999999999999999999999998899999999842 359999999999875

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=100.57  Aligned_cols=56  Identities=20%  Similarity=0.421  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|+.||||++||+.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   64 (72)
T 2dl8_A            9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH--NGIDGLIPHQYIVVQ   64 (72)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEECSSSEEEC
T ss_pred             CEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEE--CCEEEEEchHHeEEc
Confidence            45899999999999999999999999999998889999999  899999999999864

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.77  E-value=8.2e-19  Score=97.19  Aligned_cols=55  Identities=29%  Similarity=0.709  Sum_probs=52.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.|++  .|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEE--CCcEEEechHHeEEC
Confidence            4799999999999999999999999999999999999999  899999999999875

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=104.02  Aligned_cols=57  Identities=30%  Similarity=0.627  Sum_probs=52.9

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .++.||||++||+.+
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   72 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGEN--HRGIGLFPSNFVTTN   72 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEE--TTEEEEECGGGEESC
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEehHHEEEc
Confidence            456899999999999999999999999999998999999999  789999999999853

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.77  E-value=8.1e-19  Score=101.04  Aligned_cols=56  Identities=25%  Similarity=0.546  Sum_probs=51.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEE-eCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~-~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++..+||+|++||+|.|++ ..+++||.|++. .|+.||||++||+.
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~   67 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQK   67 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECT-TSCEEEEETTSEEC
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeC-CCCEEEEehHHeEE
Confidence            457999999999999999999999999999 678999999965 89999999999985

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.77  E-value=8.1e-19  Score=97.87  Aligned_cols=56  Identities=30%  Similarity=0.679  Sum_probs=52.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.  +++||.|++  .|+.||||++||+.|
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV   60 (60)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             ccEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEE--CCEEEEEeHHHEEEC
Confidence            35799999999999999999999999999986  789999999  899999999999875

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.77  E-value=1.9e-19  Score=102.16  Aligned_cols=55  Identities=40%  Similarity=0.906  Sum_probs=51.4

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++..+||+|++||+|.|+++.++|||.|+.  .|+.|+||++||+.+
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   56 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKEL   56 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEES--SSCEEEEETTTSCBC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEecHHHEEEc
Confidence            4789999999999999999999999999999999999997  899999999999863

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.4e-18  Score=100.03  Aligned_cols=58  Identities=28%  Similarity=0.603  Sum_probs=54.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+.+. ++|||.|++.+.|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   64 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEEC
Confidence            56899999999999999999999999999987 89999999976899999999999874

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.77  E-value=7.6e-19  Score=100.07  Aligned_cols=58  Identities=29%  Similarity=0.523  Sum_probs=51.7

Q ss_pred             ccEEEEeeeCCCCCCCc-eecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYE-LELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~e-L~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..++ |+|++||+|.|+.+ .++|||.|++..+|+.||||++||+.|
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            45899999999988777 99999999999864 678999999766899999999999875

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.77  E-value=6.5e-19  Score=100.39  Aligned_cols=55  Identities=33%  Similarity=0.565  Sum_probs=51.4

Q ss_pred             cEEEEeeeCCCC--CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~--~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++  ..+||+|++||+|.|+++.++|||.|+.  .|++|+||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~   58 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIF   58 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEe--CCcEEEEehHHeEEC
Confidence            368999999998  9999999999999999999999999988  899999999999874

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=100.53  Aligned_cols=56  Identities=30%  Similarity=0.654  Sum_probs=52.1

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .++.||||++||++
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGET--HQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEC--SSCEEECTTCCEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCCEEEechhhCcc
Confidence            356899999999999999999999999999998899999998  78899999999985

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.77  E-value=1e-18  Score=98.68  Aligned_cols=56  Identities=34%  Similarity=0.692  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   61 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGRTGWFPSNYVREI   61 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEE--CCCEEEEehHHeEEc
Confidence            45799999999999999999999999999998999999998  899999999999875

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.77  E-value=8e-19  Score=98.56  Aligned_cols=54  Identities=37%  Similarity=0.778  Sum_probs=51.0

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++|+|||.++..+||+|++||+|.|+++ .+++||.|+.  .|+.||||++||+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGRRGMFPDNFVKEI   57 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEE--CCcEEEechHHEEEC
Confidence            58999999999999999999999999998 7899999998  899999999999874

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.77  E-value=7.7e-19  Score=100.05  Aligned_cols=58  Identities=24%  Similarity=0.602  Sum_probs=53.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|++.+.|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   63 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   63 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEE
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEEC
Confidence            4579999999999999999999999999999889999999965579999999999864

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.77  E-value=9.1e-19  Score=97.00  Aligned_cols=55  Identities=33%  Similarity=0.725  Sum_probs=52.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE--CCcEEEEchHHeEEC
Confidence            4789999999999999999999999999998999999999  899999999999875

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.77  E-value=1.2e-18  Score=99.85  Aligned_cols=57  Identities=23%  Similarity=0.649  Sum_probs=52.6

Q ss_pred             cEEEEeeeCC-CCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYP-PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~-~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||+ ++..+||+|++||+|.|+++.++|||.|++.++|+.||||++||+.+
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   60 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY   60 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEEC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            5799999996 99999999999999999999999999999975599999999999864

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=99.57  Aligned_cols=56  Identities=27%  Similarity=0.522  Sum_probs=52.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .++.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANHVGKH   62 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEC--TTCCEEEESSSEECC
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE--CCeEEEEehHHeEEC
Confidence            45799999999999999999999999999999999999997  899999999999864

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.9e-18  Score=99.99  Aligned_cols=56  Identities=30%  Similarity=0.631  Sum_probs=51.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEe---CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~---~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++   .+++||.|+.  .|++||||++||+.+
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   66 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEF--NGRIGVFPSVLVEEL   66 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEE--TTEEEEECSSSEEEC
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEE--CCCEEEEChHHEEEC
Confidence            5689999999999999999999999999998   4789999997  899999999999875

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.77  E-value=9.6e-19  Score=100.42  Aligned_cols=58  Identities=24%  Similarity=0.597  Sum_probs=53.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|++...++.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   64 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEES
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEEC
Confidence            4579999999999999999999999999999888999999965579999999999874

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.77  E-value=7.9e-19  Score=101.20  Aligned_cols=57  Identities=33%  Similarity=0.600  Sum_probs=52.6

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   68 (72)
T 4glm_A           12 ALTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSL--KGRTGIFPYRFVKLC   68 (72)
T ss_dssp             -CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             CCeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEE--CCcEEEEChHHeEEC
Confidence            356899999999999999999999999999999999999997  899999999999864

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.77  E-value=5.8e-19  Score=100.62  Aligned_cols=55  Identities=33%  Similarity=0.495  Sum_probs=51.3

Q ss_pred             cEEEEeeeCCCC--CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~--~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++  +.+||+|++||+|.|+.+.++|||.|+.  .|++||||++||+.+
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   63 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLL   63 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEE--TTEEEEEEGGGBCCB
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEE--CCCEEEEehHhEEEc
Confidence            479999999999  8899999999999999999999999988  899999999999864

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=101.08  Aligned_cols=56  Identities=32%  Similarity=0.622  Sum_probs=51.7

Q ss_pred             ccEEEEeeeCCCCC-------CCceecCCCCEEEEEE-eCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNS-------EYELELRVGDLIYVHK-KRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~-------~~eL~~~~gd~i~v~~-~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++.       .+||+|++||+|.|+. ..+++||.|+.  .|++||||++||+.+
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   70 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL--GGHRGLVPAHLLDHM   70 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEES--SSCEEEEETTTEEEC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEE--CCcEEEEChHHeEEc
Confidence            56899999999999       9999999999999997 47899999998  899999999999875

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.77  E-value=1.1e-18  Score=100.95  Aligned_cols=56  Identities=34%  Similarity=0.759  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|++||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGML--HGHSGFFPINYVEIL   62 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEE--TTEEEEEESSSEEES
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCCEEEechHHEEEc
Confidence            46899999999999999999999999999998999999998  899999999999874

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.77  E-value=1.7e-18  Score=99.60  Aligned_cols=57  Identities=26%  Similarity=0.524  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEe--CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~--~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.+...+||+|++||+|.|+++  .++|||.|+.. .|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   64 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVL   64 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEET-TTEEEEEETTSEEEC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeC-CCCEEEEeHHHEEEC
Confidence            5689999999999999999999999999998  68899999865 799999999999875

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.2e-18  Score=100.46  Aligned_cols=57  Identities=32%  Similarity=0.580  Sum_probs=52.9

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+.+||.|+.  .|+.||||++||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   72 (79)
T 1x69_A           16 LGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC--KGRYGLFPANYVELR   72 (79)
T ss_dssp             CCCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEE--TTEEEEEETTSEEEC
T ss_pred             CCeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEE--CCcEEEechHHEEEC
Confidence            345799999999999999999999999999999999999997  899999999999874

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.77  E-value=7.5e-19  Score=99.34  Aligned_cols=56  Identities=39%  Similarity=0.905  Sum_probs=52.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.|
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   62 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL--NNKLGLFPSNFVKEL   62 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCCEEEeehHHEEEC
Confidence            45899999999999999999999999999998899999997  899999999999875

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.77  E-value=2.5e-18  Score=98.16  Aligned_cols=56  Identities=32%  Similarity=0.722  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   62 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH--HGRVGIFPRTYIELL   62 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEC--SSCEEEEETTTEEEC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEE--CCCEEEEchHHEEEC
Confidence            46899999999999999999999999999998999999996  899999999999874

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=8.7e-19  Score=102.94  Aligned_cols=58  Identities=26%  Similarity=0.499  Sum_probs=53.8

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++.++||+|++||+|.|+++ +++||.|++.+.++.||||++||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~   73 (79)
T 1x6b_A           16 DLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFI   73 (79)
T ss_dssp             SCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEE
T ss_pred             CCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEEC
Confidence            35689999999999999999999999999999 89999999987899999999999864

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=102.30  Aligned_cols=57  Identities=26%  Similarity=0.472  Sum_probs=53.1

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|+.||||++||+.+
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   65 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQI--DDEEGWFPASFVRLW   65 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEEC--SSCEEEEEGGGEEES
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEE--CCCEEEechHHEEEc
Confidence            356899999999999999999999999999999999999998  799999999999874

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.77  E-value=2.2e-18  Score=101.68  Aligned_cols=57  Identities=23%  Similarity=0.433  Sum_probs=52.2

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEe--CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~--~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||+++..+||+|++||+|.|+++  .+++||.|+.  .|++||||++||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   74 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGER--GNQKGKVPITYLELL   74 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEE--CCCEEEEehHHEEEC
Confidence            35689999999999999999999999999998  4689999997  899999999999875

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.77  E-value=1.2e-18  Score=99.31  Aligned_cols=56  Identities=20%  Similarity=0.407  Sum_probs=52.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.++..+||+|++||+|.|+++.+++||.|++. .|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-YGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS-SSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEEC-CCCEEEEEhHhEEEc
Confidence            46899999999999999999999999999999999999966 799999999999863

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=2.4e-18  Score=101.25  Aligned_cols=56  Identities=16%  Similarity=0.325  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.+++  .++.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~   63 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRF--GELEGWAPSHYLVLD   63 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEETTTEECC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEE--CCCEEEEEhHHeEEC
Confidence            45799999999999999999999999999999999999998  799999999999864

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.77  E-value=1.4e-18  Score=97.43  Aligned_cols=56  Identities=25%  Similarity=0.596  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+.+||.|+.  .|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~--~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV--NGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEE--CCEEEEEEHHHEEEC
Confidence            45799999999999999999999999999999999999998  899999999999875

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.77  E-value=1.2e-18  Score=102.42  Aligned_cols=58  Identities=19%  Similarity=0.492  Sum_probs=53.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.++|||.|++.++|+.||||++||+.+
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV   62 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEEC
Confidence            4479999999999999999999999999999999999999976899999999999874

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1e-18  Score=102.85  Aligned_cols=57  Identities=30%  Similarity=0.562  Sum_probs=52.3

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCC--CCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~--~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+  ++||.|++  .|+.||||++||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   74 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL--RGQTGIFPANYVTMN   74 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEE--TTEEEEEEGGGCCBC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEE--CCEEEEEchhHeEEc
Confidence            4568999999999999999999999999999875  89999999  899999999999863

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.76  E-value=3.3e-19  Score=104.74  Aligned_cols=57  Identities=33%  Similarity=0.733  Sum_probs=53.1

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~--~g~~G~fP~nyV~~~   73 (79)
T 1z9q_A           17 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKIL   73 (79)
T ss_dssp             SCCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEE--TTEEEEEEGGGEEES
T ss_pred             CceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEE--CCeEEEecHHHEEEC
Confidence            355799999999999999999999999999999999999998  899999999999874

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.76  E-value=3.8e-18  Score=100.35  Aligned_cols=58  Identities=34%  Similarity=0.595  Sum_probs=52.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCC---CcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT---GRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~---g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|++.++   ++.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~   67 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL   67 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEEC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEEC
Confidence            45899999999999999999999999999998899999999644   49999999999874

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.76  E-value=1.5e-18  Score=96.18  Aligned_cols=55  Identities=38%  Similarity=0.802  Sum_probs=51.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|+.  .|+.||||++||++
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVAE   57 (58)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             cEEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEE--CCCEEEEehHHEEe
Confidence            45799999999999999999999999999999999999998  89999999999985

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.76  E-value=8.2e-19  Score=97.90  Aligned_cols=54  Identities=22%  Similarity=0.456  Sum_probs=51.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|+.||||++||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRH--NGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEE--TTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCeEEEEeHhhEE
Confidence            46899999999999999999999999999998889999999  8999999999997

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.76  E-value=1.7e-18  Score=95.79  Aligned_cols=55  Identities=29%  Similarity=0.533  Sum_probs=51.3

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+++
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSY--NGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEE--CCcEEEEehHHEEEC
Confidence            3689999999999999999999999999999999999976  899999999999864

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=2.4e-18  Score=101.12  Aligned_cols=57  Identities=23%  Similarity=0.426  Sum_probs=51.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|++. +.+||.+++..+|+.||||++||+.+
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~   73 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARV   73 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEc
Confidence            4589999999999999999999999999984 67899999976799999999999863

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.76  E-value=1.8e-18  Score=98.62  Aligned_cols=56  Identities=18%  Similarity=0.408  Sum_probs=51.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++. ++||.|++. .|+.||||++||+.+
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~-~g~~G~~Psnyv~~~   59 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNA-ANRTGYVPSNYVERK   59 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECT-TSCEEECCCCSEEEC
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeC-CCCEEEeChHHEeEc
Confidence            45799999999999999999999999999985 789999976 799999999999864

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.76  E-value=6e-18  Score=100.72  Aligned_cols=58  Identities=19%  Similarity=0.373  Sum_probs=53.2

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++. ++||.|++.+.|+.||||++||+.+
T Consensus        24 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   81 (86)
T 2oi3_A           24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARV   81 (86)
T ss_dssp             TSEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEG
T ss_pred             CCcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEc
Confidence            356899999999999999999999999999988 5999999966899999999999864

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.9e-18  Score=102.78  Aligned_cols=57  Identities=30%  Similarity=0.469  Sum_probs=52.7

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEe--CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~--~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+.+  .+++||.|++  .|+.||||++||+.+
T Consensus         7 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~fP~~yv~~~   65 (85)
T 2dlp_A            7 GSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSA--GGRSGLFPADIVQPA   65 (85)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEES--SSCEEEEETTSEEEC
T ss_pred             CCEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEE--CCEEEEechHHeEEC
Confidence            35689999999999999999999999999987  8899999998  899999999999874

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.76  E-value=1.2e-18  Score=99.80  Aligned_cols=56  Identities=27%  Similarity=0.494  Sum_probs=51.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC---CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~---~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.   +++||.|+.  .|++||||++||+.+
T Consensus         3 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   61 (69)
T 1wyx_A            3 NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSL--HGRQGIVPGNRLKIL   61 (69)
T ss_dssp             EEEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             CEEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEE--CCcEEEechhhEEEC
Confidence            35799999999999999999999999999987   799999997  899999999999863

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.7e-18  Score=101.00  Aligned_cols=56  Identities=23%  Similarity=0.529  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|+.||||++||+.+
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   65 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH--NGMRGLIPHKYITLP   65 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEE--TTEEEEEESSSEECC
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEE--CCcEEEEehHHEEEc
Confidence            45799999999999999999999999999998899999999  899999999999864

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.76  E-value=1.7e-18  Score=100.26  Aligned_cols=56  Identities=34%  Similarity=0.791  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .|+.||||++||+.+
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   68 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGML--HGQSGFFPLSYVQVL   68 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEE--CCCEEEeChHHEEEC
Confidence            56899999999999999999999999999999999999998  899999999999863

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.76  E-value=1.4e-18  Score=99.02  Aligned_cols=58  Identities=24%  Similarity=0.527  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCC-CCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPP-NSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~-~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.+ +..+||+|++||+|.|+.+ .+++||.|++.++|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   65 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL   65 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEES
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            458999999996 8999999999999999986 789999999965699999999999875

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.76  E-value=2.6e-18  Score=100.87  Aligned_cols=56  Identities=13%  Similarity=0.446  Sum_probs=51.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCC----CCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~----~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+    ++||.++.  .|++||||++||+.+
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   72 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV--NGKKGYVPSNYIRKT   72 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEES--SSCEEEEEGGGEEEC
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEe--CCCEEEEchHHeEEC
Confidence            457999999999999999999999999999876    89999986  899999999999874

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.76  E-value=1.2e-18  Score=100.58  Aligned_cols=58  Identities=26%  Similarity=0.531  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCC-CCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPP-NSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~-~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.+ +..+||+|++||+|.|+.+ .+++||.|++.+++++||||++||+.+
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~   66 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            458999999996 8999999999999999987 789999999965699999999999875

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=9e-19  Score=100.59  Aligned_cols=57  Identities=25%  Similarity=0.529  Sum_probs=52.9

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||+++..+||+|++||+|.|+++.+++||.|++  .++.||||++||+.+
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   63 (70)
T 2ega_A            7 GLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVST--SEEQGWVPATYLEAQ   63 (70)
T ss_dssp             CCBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEEC--SSCEEEEEGGGCEES
T ss_pred             CCcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEE--CCCEEEEehHHcEEC
Confidence            356799999999999999999999999999999999999998  789999999999874

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=1.4e-18  Score=99.71  Aligned_cols=58  Identities=38%  Similarity=0.639  Sum_probs=53.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|+|.++..+||+|++||+|.|+++.+++||.|++...++.||||++||+.+
T Consensus         7 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV   64 (70)
T ss_dssp             SCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEEC
Confidence            4579999999999999999999999999999889999999765899999999999874

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.76  E-value=7.9e-19  Score=104.08  Aligned_cols=60  Identities=30%  Similarity=0.541  Sum_probs=52.9

Q ss_pred             CcccEEEEeeeC-CCCCCCceecCCCCEEEEEEeCCCCeEEEEEcC----CCcEEEecCCCeEEC
Q psy9679          63 TVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR----TGRTGLFPASFVESF  122 (122)
Q Consensus        63 ~~~~~~~al~dy-~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~----~g~~G~~P~~yv~~~  122 (122)
                      ....+++|+||| .++..+||+|++||+|.|+++.+++||.|++..    .|+.||||++||+.+
T Consensus        16 ~~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~   80 (83)
T 2ke9_A           16 RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV   80 (83)
T ss_dssp             -CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESS
T ss_pred             CCCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEEC
Confidence            345689999999 799999999999999999999999999999853    279999999999864

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.76  E-value=9.4e-19  Score=106.41  Aligned_cols=59  Identities=34%  Similarity=0.589  Sum_probs=53.2

Q ss_pred             CcccEEEEeeeCCCCC------CCceecCCCCEEEEE-EeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          63 TVRERFRCIVPYPPNS------EYELELRVGDLIYVH-KKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~------~~eL~~~~gd~i~v~-~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....+++|+|||.++.      .+||+|++||+|.|+ ++.++|||.|+.. .|++||||++||+.+
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~-~g~~G~~Psnyv~~~   80 (96)
T 1wie_A           15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DGQRGLVPSNFVDFV   80 (96)
T ss_dssp             SCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET-TCCBCBCCTTSEECC
T ss_pred             CCCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEEC-CCCEEEEchHHEEEc
Confidence            3457899999999988      999999999999999 7788999999975 799999999999864

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.76  E-value=2.1e-18  Score=96.50  Aligned_cols=55  Identities=27%  Similarity=0.634  Sum_probs=50.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEE-EecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTG-LFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G-~~P~~yv~~~  122 (122)
                      .+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .++.| |||++||+.|
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~gG~~P~~yv~~~   59 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY--GGKKQLWFPSNYVEEM   59 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEEGGGEEEC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEE--CCeEEEEEChHHcEEC
Confidence            4699999999999999999999999999998999999999  67776 9999999875

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.76  E-value=4.5e-18  Score=102.33  Aligned_cols=58  Identities=28%  Similarity=0.535  Sum_probs=52.8

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEe--CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~--~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||+++..+||+|++||+|.|+++  .+++||.|++. .|++||||.+||+.+
T Consensus        16 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   75 (91)
T 1wx6_A           16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVL   75 (91)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECT-TCCEEEEEGGGEEEE
T ss_pred             ccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeC-CCCEEEEchHHEEEC
Confidence            35689999999999999999999999999998  68899999965 799999999999864

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.76  E-value=1.7e-18  Score=97.17  Aligned_cols=55  Identities=33%  Similarity=0.668  Sum_probs=51.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|++  .++.||||++||+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNFVTT   59 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEES
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEE--CCCEEEechhHEEE
Confidence            45799999999999999999999999999998999999999  78899999999975

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=3.5e-18  Score=99.44  Aligned_cols=58  Identities=17%  Similarity=0.389  Sum_probs=52.2

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCC--CcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT--GRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~--g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++ .+||+|++||+|.|+++.+++||.+++...  +++||||++||+.+
T Consensus         9 ~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~   68 (75)
T 2egc_A            9 LKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK   68 (75)
T ss_dssp             CCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEEC
T ss_pred             CCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEEC
Confidence            35679999999999 999999999999999999999999999642  58999999999874

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=5.6e-18  Score=99.92  Aligned_cols=57  Identities=19%  Similarity=0.374  Sum_probs=52.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCC-CeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~-gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.++ +||.+++...|+.||||++||++
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   74 (81)
T 1x6g_A           17 GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRE   74 (81)
T ss_dssp             TCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEE
Confidence            4479999999999999999999999999998766 99999986689999999999986

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=2.7e-18  Score=100.57  Aligned_cols=58  Identities=17%  Similarity=0.378  Sum_probs=52.4

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+ ++||.|++. .|+.||||++||+.+
T Consensus        12 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   70 (78)
T 2dl5_A           12 YPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNK-VGQVGYVPEKYLQFP   70 (78)
T ss_dssp             SSEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECT-TCCEEEEETTTSCCS
T ss_pred             CCcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeC-CCCEEEEEhHHEEEC
Confidence            3468999999999999999999999999999975 899999995 499999999999863

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.75  E-value=2e-18  Score=104.36  Aligned_cols=56  Identities=30%  Similarity=0.749  Sum_probs=51.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.  ++|||.|+.  .|++||||.+||+.+
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~   62 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNYVEKM   62 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE--TTEEEEEETTTEEEC
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEE--CCCEEEechHHeEEc
Confidence            45799999999999999999999999999886  789999997  899999999999874

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.75  E-value=2.3e-18  Score=98.82  Aligned_cols=56  Identities=36%  Similarity=0.818  Sum_probs=52.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.  +++||.|+.  .|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   64 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL--NGRRGVFPDNFVKLL   64 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEEC--SSCEEEEEGGGEEEC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEE--CCcEEEechHHeEEC
Confidence            46899999999999999999999999999985  889999997  899999999999874

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.75  E-value=1.4e-18  Score=98.22  Aligned_cols=57  Identities=25%  Similarity=0.545  Sum_probs=51.8

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCC------CcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT------GRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~------g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++..+||+|++||+|.|+++.+++||.|+..++      ++.||||++||+.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            4789999999999999999999999999999999999998422      89999999999875

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.75  E-value=2.8e-18  Score=98.05  Aligned_cols=56  Identities=18%  Similarity=0.405  Sum_probs=51.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++. ++||.++.. .|+.||||++||+.+
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~g~~G~~P~~yv~~~   63 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDP-AGQEGYVPYNILTPY   63 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECT-TSCCEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeC-CCCEEEEEhhhEEEc
Confidence            56899999999999999999999999999986 789999885 799999999999874

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=2.6e-18  Score=98.80  Aligned_cols=56  Identities=29%  Similarity=0.538  Sum_probs=52.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC---CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR---DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~---~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.   +++||.|+.  .|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   65 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLL--HGRQGLAPANRLQIL   65 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEES--SSCCEEEETTTEEEC
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEE--CCCEEEEehHHEEEC
Confidence            45899999999999999999999999999987   899999995  899999999999874

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.75  E-value=2.7e-18  Score=100.58  Aligned_cols=56  Identities=30%  Similarity=0.606  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGEL--NGLRGWFPAKFVEVL   62 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEE--CCCEEEEehHHEEEC
Confidence            46899999999999999999999999999999999999998  899999999999863

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.75  E-value=1.7e-18  Score=99.12  Aligned_cols=56  Identities=29%  Similarity=0.678  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.+++  .++.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   63 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER--NGQRGFVPGSYLEKL   63 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGCCBC
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEE--CCCEEEEehHHeEEc
Confidence            45899999999999999999999999999998999999999  799999999999864

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.75  E-value=9.1e-19  Score=101.16  Aligned_cols=56  Identities=27%  Similarity=0.583  Sum_probs=51.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++ .+.+||.|+.  .|+.||||++||+.+
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   66 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVEFL   66 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEES--SSCEEEEEGGGEEEC
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEE--CCcEEEecHHHEEEC
Confidence            4579999999999999999999999998874 6789999996  899999999999875

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.75  E-value=1.9e-18  Score=98.88  Aligned_cols=56  Identities=32%  Similarity=0.624  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.. .|+.||||++||++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~   61 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG-KGQEGYFPANHVAS   61 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEE-TTEEEEEEGGGEEE
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeC-CCCEEEEchHHeEE
Confidence            458999999999999999999999999999999999999985 89999999999986

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.75  E-value=1.9e-18  Score=98.64  Aligned_cols=57  Identities=23%  Similarity=0.608  Sum_probs=52.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+.+.+++||.|++. .|+.||||++||+.+
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   66 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDA-KGNEGLVPRTYLEPY   66 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECS-SSCEEEEESTTEEEC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEehHHeEEC
Confidence            467999999999999999999999999999988999999965 899999999999875

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.75  E-value=1.5e-18  Score=99.46  Aligned_cols=57  Identities=26%  Similarity=0.583  Sum_probs=50.8

Q ss_pred             ccEEEEeeeCCCCCCC-ceecCCCCEEEEEEeCC-----CCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEY-ELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~-eL~~~~gd~i~v~~~~~-----~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|+|.++.++ ||+|++||+|.|+++.+     ++||.|++. .|+.|+||++||+.|
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~-~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII   69 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEET-TTEEEEECGGGEEEC
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeC-CCCEEEecHHHEEEC
Confidence            3478999999999998 99999999999999875     499999996 799999999999875

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.75  E-value=2.6e-17  Score=101.98  Aligned_cols=59  Identities=17%  Similarity=0.437  Sum_probs=54.4

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|++...++.||||++||+.+
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   84 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPA   84 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEES
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEEC
Confidence            45689999999999999999999999999999999999999855899999999999864

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.75  E-value=2.6e-18  Score=101.80  Aligned_cols=57  Identities=23%  Similarity=0.540  Sum_probs=52.4

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~   72 (83)
T 1neg_A           16 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKL   72 (83)
T ss_dssp             -CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEE--CCeEEEEEHHHEEEC
Confidence            355899999999999999999999999999998899999977  899999999999874

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.75  E-value=3.1e-18  Score=98.99  Aligned_cols=56  Identities=23%  Similarity=0.570  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   60 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKL   60 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEE--CCcEEEEehHHeEEC
Confidence            45899999999999999999999999999998999999997  899999999999874

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.75  E-value=3.3e-18  Score=101.63  Aligned_cols=58  Identities=19%  Similarity=0.401  Sum_probs=54.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+....|+.||||++||+.+
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   63 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV   63 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            4589999999999999999999999999999999999999976899999999999874

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.75  E-value=1e-18  Score=99.83  Aligned_cols=56  Identities=39%  Similarity=0.888  Sum_probs=52.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKEL   62 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECS--TTCCEEEETTSEEEC
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEE--CCcEEEEchHHEEEC
Confidence            45799999999999999999999999999988899999996  899999999999875

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.75  E-value=2.2e-18  Score=100.45  Aligned_cols=56  Identities=36%  Similarity=0.761  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   65 (76)
T 1ujy_A           10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL--NGRTGWFPSNYVREI   65 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEE--TTEEEEECTTTSEEC
T ss_pred             CEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEE--CCCEEEechHHEEEC
Confidence            45799999999999999999999999999998999999998  899999999999874

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=4.7e-18  Score=99.73  Aligned_cols=56  Identities=32%  Similarity=0.817  Sum_probs=52.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||.+||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL--NGKKGHFPAAYVEEL   62 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEES--SSCEEEECSTTEEEE
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEE--CCCEEEEEhHHeEEC
Confidence            45899999999999999999999999999998899999996  899999999999863

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.2e-18  Score=99.16  Aligned_cols=56  Identities=27%  Similarity=0.542  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.+++  .++.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   63 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRY--LGKEGWAPASYLKKA   63 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEE--TTEEEEEEGGGCEEC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEE--CCcEEEEEHHHeEEc
Confidence            46899999999999999999999999999998899999999  699999999999874

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.74  E-value=5.4e-18  Score=98.93  Aligned_cols=58  Identities=22%  Similarity=0.515  Sum_probs=53.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCC-CcE------EEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRT------GLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~-g~~------G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|++.++ ++.      ||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~   71 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAED   71 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEEC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEc
Confidence            45899999999999999999999999999998999999999644 888      99999999874

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=4.4e-18  Score=98.49  Aligned_cols=56  Identities=32%  Similarity=0.622  Sum_probs=51.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.  +++||.|+.  .|++||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   64 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET--NGRIGWFPSTYVEEE   64 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEE--TTEEEEECSSSEEEC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEE--CCeEEEeehHHEEEc
Confidence            45799999999999999999999999999987  459999998  899999999999874

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.2e-17  Score=99.40  Aligned_cols=57  Identities=19%  Similarity=0.357  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.. .|+.||||++||+.+
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~~   75 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDR-NGHEGYVPSSYLVEK   75 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECS-SSCEEEEETTTCEEC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEEC-CCCEEEEehHHeEEc
Confidence            468999999999999999999999999999998999999875 899999999999863

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=4.2e-18  Score=103.09  Aligned_cols=59  Identities=36%  Similarity=0.721  Sum_probs=53.0

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEe--CC--CCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKK--RD--DGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~--~~--~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|+|.++..+||+|++||+|.|+++  .+  +|||.|++...|+.|+||++||+.+
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~   77 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA   77 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEEC
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEc
Confidence            45689999999999999999999999999987  34  8999999755899999999999874

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.4e-18  Score=94.02  Aligned_cols=52  Identities=33%  Similarity=0.677  Sum_probs=49.0

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeE
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      +++|+|||.++..+||+|++||+|.|+++.+ ++||.|++  .|+.||||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~--~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC--DGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEE--TTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEE--CCeEEEeeHHHcC
Confidence            5899999999999999999999999999885 79999999  8999999999985

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.74  E-value=2.1e-18  Score=95.55  Aligned_cols=54  Identities=26%  Similarity=0.535  Sum_probs=50.6

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeE
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      +++|+|||.++.++||+|++||+|.|+++.+ ++||.|++.+.|++||||++||+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            5899999999999999999999999999886 79999999777999999999997

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=6.2e-18  Score=102.94  Aligned_cols=56  Identities=32%  Similarity=0.607  Sum_probs=50.7

Q ss_pred             ccEEEEeeeCCCC--------CCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPN--------SEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~--------~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++        ..+||+|++||+|.|+.+ .++|||.|++  .|++||||++||+.+
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~--~g~~G~~P~~yv~~~   81 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET--CARLGLIPCNMVSEI   81 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEE--TTEEEEEETTTSEEC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEE--CCcEEEEehHHeEEC
Confidence            4579999999998        789999999999999965 5688999999  899999999999875

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.74  E-value=1.6e-18  Score=99.35  Aligned_cols=55  Identities=29%  Similarity=0.689  Sum_probs=50.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++ +++||.|+.  .|+.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~--~g~~G~~P~~yv~~~   62 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVKPK   62 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECS--TTCCEEECGGGCEEC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEe--CCcEEEEchHHeEEC
Confidence            4589999999999999999999999999988 789999986  899999999999874

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.74  E-value=1e-17  Score=97.82  Aligned_cols=57  Identities=26%  Similarity=0.597  Sum_probs=52.3

Q ss_pred             ccEEEEeeeCCCC-CCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPN-SEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~-~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++ ..+||+|++||+|.|+.+. +++||.|++. .|+.||||++||+.+
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~-~g~~G~~P~~yv~~~   67 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNN-KGEQGLVPTDYVEIL   67 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECT-TCCEEEEETTTEEEE
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEEC-CCCEEEeehHHeEEC
Confidence            4689999999999 9999999999999999985 7999999965 799999999999864

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.74  E-value=3.9e-18  Score=102.31  Aligned_cols=56  Identities=34%  Similarity=0.760  Sum_probs=51.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-----CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-----~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.     ++|||.|++. .|++||||++||++
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~-~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP-SGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECT-TCCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEEC-CCCEEEEcHHHCcC
Confidence            46899999999999999999999999999985     8999999997 79999999999974

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.74  E-value=8.2e-18  Score=101.39  Aligned_cols=60  Identities=28%  Similarity=0.591  Sum_probs=53.8

Q ss_pred             CCcccEEEEeeeCCCCCCC-ceecCCCCEEEEEEeCCC-----CeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          62 PTVRERFRCIVPYPPNSEY-ELELRVGDLIYVHKKRDD-----GWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        62 ~~~~~~~~al~dy~~~~~~-eL~~~~gd~i~v~~~~~~-----gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      +....+++|+|||.++..+ ||+|++||+|.|+++.+.     |||.|++. .|+.||||++||+.+
T Consensus        11 ~~~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~-~g~~G~~P~~yv~~~   76 (92)
T 1jqq_A           11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII   76 (92)
T ss_dssp             STTCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEET-TSCEEEEEGGGEEEC
T ss_pred             CCcCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeC-CCCEEEEehHHeEEC
Confidence            3346789999999999999 999999999999998876     99999985 799999999999874

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.74  E-value=6.6e-18  Score=96.46  Aligned_cols=56  Identities=18%  Similarity=0.436  Sum_probs=51.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++. ++||.+++. .++.||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~g~~G~~P~~yv~~~   62 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNE-AGRSGYIPSNILEPL   62 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECT-TSCEEEEEGGGEECC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEEC-CCCEEEEEhHHcEEC
Confidence            45799999999999999999999999999985 899999964 899999999999864

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.74  E-value=2.7e-18  Score=95.70  Aligned_cols=56  Identities=32%  Similarity=0.716  Sum_probs=50.0

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+++. +++||.|+.. +|+.||||++||+.|
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~-~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLD-SGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECS-SCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeC-CCCEEEecHHHEEEC
Confidence            4699999999999999999999999999875 4599999984 599999999999875

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.74  E-value=3.5e-18  Score=100.47  Aligned_cols=59  Identities=27%  Similarity=0.558  Sum_probs=53.5

Q ss_pred             CcccEEEEeeeCCCCCCC-ceecCCCCEEEEEEeCCC-----CeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          63 TVRERFRCIVPYPPNSEY-ELELRVGDLIYVHKKRDD-----GWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        63 ~~~~~~~al~dy~~~~~~-eL~~~~gd~i~v~~~~~~-----gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....+++|+|||.++..+ ||+|++||+|.|+++.+.     +||.|++. .|+.||||++||+.+
T Consensus        12 ~~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   76 (80)
T 2v1r_A           12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII   76 (80)
T ss_dssp             GGCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT-TSCEEEEEGGGEEEC
T ss_pred             CcCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeC-CCCeEEEEHHHeEEc
Confidence            345689999999999999 999999999999998876     99999985 799999999999875

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=4.3e-18  Score=101.90  Aligned_cols=56  Identities=30%  Similarity=0.555  Sum_probs=52.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||+++..+||+|++||+|.|+++.+++||.+++  .++.||||++||+.+
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~~P~~yv~~~   72 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY--NGQVGWFPSNYVTEE   72 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEE--CCcEEEEehHHEEEC
Confidence            45799999999999999999999999999999999999999  899999999999874

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.74  E-value=7.3e-18  Score=97.32  Aligned_cols=56  Identities=18%  Similarity=0.431  Sum_probs=51.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++ +++||.|+.. .|+.||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~~   62 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNS-MNKTGFVPSNYVERK   62 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECT-TSCEEEECTTSCEEC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEEC-CCCEEEEEhhHEEEc
Confidence            4589999999999999999999999999997 5699999976 899999999999864

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.73  E-value=6e-18  Score=98.13  Aligned_cols=55  Identities=22%  Similarity=0.557  Sum_probs=50.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++. ++||.|++  .++.||||++||+.+
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~--~g~~G~~P~~yv~~~   64 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEV--HGGRGWFPKSYVKII   64 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEES--TTCCCEEEGGGEEEC
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEecC-CCEEEEEE--CCcEEEEchHHeEEC
Confidence            45899999999999999999999999999985 78999998  799999999999874

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.73  E-value=9.4e-18  Score=94.25  Aligned_cols=56  Identities=13%  Similarity=0.369  Sum_probs=50.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++. +.+||.++.  .|+.||||++||+++
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~~P~~yv~~~   61 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYITPV   61 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEE--TTEEEEEEGGGEEES
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEE--CCCeEEEehHHeEEC
Confidence            45899999999999999999999999999954 567999999  899999999999875

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.73  E-value=6.9e-17  Score=101.69  Aligned_cols=57  Identities=25%  Similarity=0.539  Sum_probs=52.0

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcC-CCcEEEecCCCeEE
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFVES  121 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~yv~~  121 (122)
                      ...+++|+|||.++..+||+|++||+|.|++++ +|||+|++.+ .|+.||||++||+.
T Consensus        58 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~  115 (119)
T 2rqr_A           58 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHI  115 (119)
T ss_dssp             CCEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCC
T ss_pred             CceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEE
Confidence            356899999999999999999999999999986 5999999976 68999999999975

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.73  E-value=4.4e-18  Score=97.40  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=51.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|++. .++.||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~~~G~~P~~yv~~~   63 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYG-TRIQQYFPSNYVEDI   63 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEET-TEEEEEECGGGEEEC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEchHHcEEC
Confidence            457999999999999999999999999999988999999984 444599999999874

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.73  E-value=2.5e-18  Score=95.86  Aligned_cols=55  Identities=15%  Similarity=0.358  Sum_probs=50.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.++..+||+|++||+|.|+++ +++||.++.. .|+.||||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~-~g~~G~~P~~yv~~~   56 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNA-SGDSGFVPNNILDIM   56 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECT-TSCEEEEEGGGEEEE
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC-CCCEEEEEHHHeEEc
Confidence            468999999999999999999999999999 8899999976 799999999999864

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=6.5e-18  Score=96.48  Aligned_cols=56  Identities=14%  Similarity=0.357  Sum_probs=51.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++. ++||.+++. .|+.||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~g~~G~~P~~yv~~~   62 (68)
T 1wxb_A            7 GKYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSR-SGQAGYVPCNILGEA   62 (68)
T ss_dssp             CCCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECT-TSCEEEEETTTCCBC
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEEC-CCCEEEEEHHHeEEC
Confidence            45799999999999999999999999999985 889999975 799999999999864

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.73  E-value=2.7e-18  Score=103.19  Aligned_cols=59  Identities=31%  Similarity=0.598  Sum_probs=51.4

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEe-------------CCC--CeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKK-------------RDD--GWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~-------------~~~--gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++.++||+|++||+|.|+.+             ..+  |||.|++.++|++||||++||+.+
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i   83 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFL   83 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEe
Confidence            35689999999999999999999999999842             223  899999976799999999999864

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.73  E-value=6.7e-18  Score=97.36  Aligned_cols=57  Identities=21%  Similarity=0.539  Sum_probs=52.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCC-CcE---EEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRT---GLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~-g~~---G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.| ++.++|||.|++.++ |+.   ||||++||+.+
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~   70 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER   70 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEE
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEc
Confidence            4589999999999999999999999999 888899999999765 888   99999999863

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=4.8e-18  Score=99.04  Aligned_cols=56  Identities=39%  Similarity=0.737  Sum_probs=51.1

Q ss_pred             ccEEEEeeeCCCCC-------CCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNS-------EYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~-------~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++.       .+||+|++||+|.|+++.+ +|||.|+.  .|++||||++||+.+
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~   70 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL--NGQKGLVPSNFLEEV   70 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEE--TTEEEEEEGGGCCBC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEE--CCcEEEEehHHEEEC
Confidence            56899999999998       8999999999999999875 58999998  899999999999864

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.72  E-value=1.1e-18  Score=99.46  Aligned_cols=57  Identities=21%  Similarity=0.531  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.+++. .|+.||||++||+++
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~   64 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEA   64 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT-TSCBCCEETTTBCCS
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEEC-CCCEEEEchHhEEEc
Confidence            458999999999999999999999999999988999999965 799999999999864

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=1.7e-17  Score=95.18  Aligned_cols=57  Identities=19%  Similarity=0.380  Sum_probs=51.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++.++||+|++||+|.|+++. .+|||.+++. .|+.||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~-~g~~G~~P~~yv~~~   64 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-EGGEGYVPTSYLRVT   64 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECS-SSCEEEEEGGGEEEC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeC-CCCEEEEEhHHeEEc
Confidence            45799999999999999999999999999986 4679999985 699999999999864

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.72  E-value=4.7e-18  Score=98.61  Aligned_cols=55  Identities=25%  Similarity=0.601  Sum_probs=50.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++..+||+|++||+|.|+++. +.+||.|+.  .|++||||++||+.
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~--~g~~G~~P~~yv~~   64 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEM   64 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEE--TTEEEEEEGGGEEE
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEE--CCCEEEEehHhEEE
Confidence            45799999999999999999999999999987 678999998  89999999999986

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.72  E-value=2.5e-18  Score=103.79  Aligned_cols=56  Identities=41%  Similarity=0.921  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+.+.+++||.|++  .|+.||||++||+.+
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~--~g~~G~fPsnyV~~~   73 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL--NGKTGMFPSNFIKEL   73 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEE--TTEECCBCSSSEECC
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEE--CCeEEEeehHHEEEC
Confidence            46899999999999999999999999999998899999998  899999999999864

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.72  E-value=3.4e-18  Score=107.10  Aligned_cols=61  Identities=28%  Similarity=0.584  Sum_probs=53.8

Q ss_pred             CCcccEEEEeeeCCCCCCCceecCCCCEEEEEE-----eCCCCeEEEEEcCC--------CcEEEecCCCeEEC
Q psy9679          62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHK-----KRDDGWYKGTLQRT--------GRTGLFPASFVESF  122 (122)
Q Consensus        62 ~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~-----~~~~gW~~g~~~~~--------g~~G~~P~~yv~~~  122 (122)
                      +....+++|+|||.++..+||+|++||+|.|+.     ..++|||.|++.++        |++||||++||+.|
T Consensus        41 ~~~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           41 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             TTCCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             CCcceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            344568999999999999999999999999999     77899999988533        78999999999875

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.72  E-value=3.6e-17  Score=97.45  Aligned_cols=55  Identities=18%  Similarity=0.440  Sum_probs=50.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++..+||+|++||+|.|+++ +++||.|++. .|+.||||++||+.
T Consensus        31 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNA-ANRTGYVPSNYVER   85 (86)
T ss_dssp             CEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECT-TSCEEEEEGGGBCC
T ss_pred             ceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEEC-CCCEEEeehHHEEe
Confidence            4689999999999999999999999999998 6799999976 89999999999974

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.71  E-value=7e-18  Score=97.62  Aligned_cols=53  Identities=23%  Similarity=0.579  Sum_probs=49.4

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++|+|||.+ ..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   54 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKL   54 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEE--CCCEEEEehHHeEEc
Confidence            4789999998 8999999999999999999999999997  899999999999874

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.71  E-value=1.3e-17  Score=103.26  Aligned_cols=58  Identities=26%  Similarity=0.448  Sum_probs=50.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEe-CCCC--eEEEEEcCC------CcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDG--WYKGTLQRT------GRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~-~~~g--W~~g~~~~~------g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+.+ .+.|  ||.|+..++      |++||||+|||+++
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~   88 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   88 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEc
Confidence            4579999999999999999999999999998 3444  999998532      89999999999863

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.70  E-value=5.7e-18  Score=100.28  Aligned_cols=58  Identities=31%  Similarity=0.675  Sum_probs=51.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEe---------------CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~---------------~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+.+               .+.|||.|++..+|+.|+||++||+.+
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~   77 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI   77 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEEC
Confidence            4579999999999999999999999999954               244899999876799999999999864

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.70  E-value=2.1e-17  Score=95.70  Aligned_cols=57  Identities=28%  Similarity=0.591  Sum_probs=51.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCC-CcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT-GRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~-g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++. +|||.|++.+. |+.|+||++||+.+
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~   68 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLK   68 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEEC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEe
Confidence            45799999999999999999999999999986 78999998644 89999999999863

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.70  E-value=5.1e-17  Score=105.18  Aligned_cols=57  Identities=30%  Similarity=0.634  Sum_probs=52.6

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++. ++|||.|+.  .|+.||||++||+.+
T Consensus         4 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~--~g~~G~fP~~yv~~~   61 (142)
T 2kbt_A            4 TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEI--YGRIGWFPSNYVEED   61 (142)
T ss_dssp             CCCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEE--TTEEEEEETTSEEES
T ss_pred             cCeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEE--CCeeEEechHHEEEc
Confidence            456899999999999999999999999999984 889999998  899999999999864

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.70  E-value=2e-17  Score=94.89  Aligned_cols=56  Identities=20%  Similarity=0.561  Sum_probs=49.5

Q ss_pred             ccEEEEeeeCCCCCCC--ceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEY--ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~--eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|+|.++..+  ||+|++||+|.|+++ +++||.|+.. .|+.||||++||+.+
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~-~g~~G~~P~~yv~~~   62 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRA-NGETGIIPSNYVQLI   62 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECT-TSCEEEEEGGGEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC-CCCEEEEehHHEEEC
Confidence            3579999999998655  999999999999886 6899999876 899999999999863

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.70  E-value=1.6e-16  Score=108.78  Aligned_cols=61  Identities=28%  Similarity=0.584  Sum_probs=53.7

Q ss_pred             CCcccEEEEeeeCCCCCCCceecCCCCEEEEEE-----eCCCCeEEEEEcC--------CCcEEEecCCCeEEC
Q psy9679          62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHK-----KRDDGWYKGTLQR--------TGRTGLFPASFVESF  122 (122)
Q Consensus        62 ~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~-----~~~~gW~~g~~~~--------~g~~G~~P~~yv~~~  122 (122)
                      +....+++|||+|.++..+||+|++||+|.|+.     ..++|||.|++.+        .|+.||||.+||+.|
T Consensus       139 ~~~~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          139 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             TTCCEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             CCcceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            344568999999999999999999999999999     7789999999742        389999999999874

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.69  E-value=2.2e-17  Score=100.58  Aligned_cols=56  Identities=36%  Similarity=0.662  Sum_probs=52.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   89 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYVKMT   89 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBS--SSCBCCEETTSEEEC
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEE--CCcEEEEehHHeEEc
Confidence            56899999999999999999999999999998899999996  899999999999864

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.69  E-value=5.1e-17  Score=97.50  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=51.2

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.++..+||+|++||+|.|+++ +++||.|+....|+.||||++||+.+
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~   59 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   59 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEEC
Confidence            479999999999999999999999999998 47899999966899999999999863

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.69  E-value=8.3e-18  Score=104.16  Aligned_cols=58  Identities=21%  Similarity=0.395  Sum_probs=50.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEc-CCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|+.. +.|+.|+||++||+.+
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~   63 (108)
T 2rqv_A            5 SLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII   63 (108)
T ss_dssp             CCCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCC
T ss_pred             CeEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEe
Confidence            457999999999999999999999999999889999999983 1245599999999753

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.68  E-value=5.2e-17  Score=98.06  Aligned_cols=56  Identities=30%  Similarity=0.586  Sum_probs=50.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCC----CCeEEEEEcCCCc-EEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGR-TGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~----~gW~~g~~~~~g~-~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+    .+||.|+.  .++ .||||.+||+.+
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~--~~~~~G~~P~~yv~~~   77 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL--DGQTTGLIPANYVKIL   77 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEES--SSSSCEEECSTTEEEC
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEe--CCcCEEEEehHHEEEc
Confidence            457999999999999999999999999999876    69999987  555 999999999875

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.67  E-value=4e-17  Score=102.91  Aligned_cols=57  Identities=21%  Similarity=0.401  Sum_probs=52.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEE-cCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL-QRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~-~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.|++ .+.|+.||||++||+.+
T Consensus         4 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~   61 (120)
T 2kym_A            4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII   61 (120)
T ss_dssp             CEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEE
T ss_pred             EEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEc
Confidence            4799999999999999999999999999999999999997 34789999999999863

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.67  E-value=4.4e-18  Score=99.42  Aligned_cols=56  Identities=21%  Similarity=0.427  Sum_probs=51.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|++. .|+.||||++||+.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~   75 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVE   75 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCS-SSCCCCCBSTTCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEEC-CCCEEEEehHHEEE
Confidence            457999999999999999999999999999988999999974 89999999999975

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.67  E-value=5.6e-16  Score=90.58  Aligned_cols=56  Identities=27%  Similarity=0.528  Sum_probs=46.4

Q ss_pred             EEEEeeeCCCCC---CCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNS---EYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~---~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++++|+|.++.   .+||+|++||+|.|+++. ++|||.|++...|+.||||++||+.+
T Consensus        17 ~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           17 VFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             ECSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             EEEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            344556666542   589999999999999995 89999999865899999999999874

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.66  E-value=3.6e-16  Score=89.53  Aligned_cols=56  Identities=23%  Similarity=0.466  Sum_probs=45.1

Q ss_pred             EEEEeeeCCC------CCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPP------NSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~------~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++++.|.+      +..+||+|++||+|.|+++ .+.+||.|++...|+.||||++||+.+
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C            6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cceEEEEEEecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            4445544443      3445999999999999998 588999998766899999999999874

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.64  E-value=3.8e-18  Score=98.21  Aligned_cols=56  Identities=25%  Similarity=0.595  Sum_probs=50.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEE-EecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTG-LFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G-~~P~~yv~~~  122 (122)
                      ..+++|+|||.++..+||+|++||+|.|+.+.+++||.|++  .++.| |||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~gG~~P~~yv~~~   62 (71)
T 1hsq_A            6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY--GGKKQLWFPSNYVEEM   62 (71)
T ss_dssp             SSCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBC--SSSCSCCEETTTCCSC
T ss_pred             CeEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEE--CCeEEeEEChHHcEEC
Confidence            44789999999999999999999999999998999999998  67776 9999999864

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.62  E-value=8.1e-16  Score=102.41  Aligned_cols=57  Identities=23%  Similarity=0.465  Sum_probs=53.0

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ....++|+|||.++.++||+|++||+|.|+++.+++||.|+.. .|+.||||++||+.
T Consensus       117 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          117 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA-LGTTGLVPANYVQI  173 (174)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECT-TCCEEEEEGGGEEE
T ss_pred             cccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEEC-CCCEEEEChHHEEe
Confidence            4568999999999999999999999999999999999999964 89999999999985

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.61  E-value=1.4e-15  Score=101.31  Aligned_cols=56  Identities=21%  Similarity=0.513  Sum_probs=51.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++..+||+|++||+|.|+++ +.+||.++....|+.|+||++|++.
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~   67 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK   67 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeeccccccc
Confidence            4689999999999999999999999999998 6789999997689999999999985

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.60  E-value=1.2e-15  Score=104.59  Aligned_cols=57  Identities=32%  Similarity=0.681  Sum_probs=53.4

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus       157 ~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~~  213 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTPV  213 (217)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEC--SSCEEEEEGGGEEEE
T ss_pred             CceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEE--CCeEEEEeHHHeEEC
Confidence            456899999999999999999999999999999999999998  899999999999864

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.59  E-value=3.7e-15  Score=100.81  Aligned_cols=56  Identities=27%  Similarity=0.429  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|.+||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~  136 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK--DDVTGYFPSMYLQKS  136 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEET
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEE--CCCEEEEehHHeEEC
Confidence            45789999999999999999999999999998999999997  899999999999864

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.59  E-value=5e-16  Score=105.10  Aligned_cols=59  Identities=31%  Similarity=0.624  Sum_probs=53.0

Q ss_pred             CCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        62 ~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      +.....++|+|||.+...+||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus         8 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~   66 (193)
T 1ng2_A            8 FIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM--KAKRGWIPASFLEPL   66 (193)
T ss_dssp             --CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEE--CCCCCCCCGGGCCCS
T ss_pred             CCcCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEE--CCeeeEechheEEee
Confidence            34467899999999999999999999999999999999999996  899999999999753

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.57  E-value=2.8e-15  Score=114.47  Aligned_cols=58  Identities=21%  Similarity=0.503  Sum_probs=52.5

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ....++|+|||+++.++||+|++||+|.|+++.+++||.|+...+|+.||||++||+.
T Consensus        84 ~~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~  141 (535)
T 2h8h_A           84 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP  141 (535)
T ss_dssp             ---CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcc
Confidence            3457999999999999999999999999999999999999997679999999999985

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.57  E-value=4.1e-15  Score=105.29  Aligned_cols=54  Identities=31%  Similarity=0.676  Sum_probs=51.5

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..++|+|||.++.++||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~   56 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV--SGQVGLFPSNYVKL   56 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEE--TTEEEEEEGGGEEE
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEE--CCCCCcCCCccccc
Confidence            5799999999999999999999999999999999999998  89999999999986

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.55  E-value=7.1e-16  Score=106.91  Aligned_cols=58  Identities=24%  Similarity=0.634  Sum_probs=53.3

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....++|+|||.++..+||+|++||+|.|+++.+++||.|++. .|+.||||++||+.+
T Consensus       135 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~  192 (230)
T 2dvj_A          135 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKY  192 (230)
T ss_dssp             CCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECT-TSCEEEEEGGGSCCC
T ss_pred             cceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeC-CCCEEEEehHHeEEc
Confidence            4567999999999999999999999999999999999999965 899999999999864

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.54  E-value=2.1e-14  Score=103.14  Aligned_cols=58  Identities=24%  Similarity=0.634  Sum_probs=53.6

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|++. .|+.||||++||+.+
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~~~  190 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEKY  190 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECT-TSCEEEEESTTEEEC
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeC-CCceeccchhccccc
Confidence            4568999999999999999999999999999999999999965 899999999999874

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.53  E-value=1.4e-14  Score=105.55  Aligned_cols=56  Identities=34%  Similarity=0.745  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~  229 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV--RGATGIFPLSFVKIL  229 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEE--TTEEEEEEGGGEEEE
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEE--CCcEEEechHHeEEc
Confidence            45799999999999999999999999999999999999997  899999999999863

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.52  E-value=1.4e-14  Score=104.02  Aligned_cols=56  Identities=29%  Similarity=0.406  Sum_probs=51.6

Q ss_pred             ccEEEEeeeCC--CCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYP--PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~--~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.  +...+||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus       237 ~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~  294 (304)
T 2eyz_A          237 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC--NGKRGHFPFTHVRLL  294 (304)
T ss_dssp             CCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEE--TTEEEECCCTTSCCC
T ss_pred             CEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEE--CCceEEechHHEEEC
Confidence            45789999999  678999999999999999999999999998  899999999999864

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.52  E-value=2.2e-14  Score=109.55  Aligned_cols=58  Identities=31%  Similarity=0.455  Sum_probs=54.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|++.++|+.|+||+|||+.+
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~  499 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREK  499 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEc
Confidence            4679999999999999999999999999999999999999866899999999999864

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.50  E-value=2.1e-14  Score=96.53  Aligned_cols=56  Identities=25%  Similarity=0.559  Sum_probs=50.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcC-CCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~yv~~  121 (122)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+ +||.|+..+ .|+.|+||++||+.
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~   73 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHI   73 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEE
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEE
Confidence            458999999999999999999999999999876 599999853 47899999999985

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.50  E-value=3.4e-14  Score=106.99  Aligned_cols=56  Identities=27%  Similarity=0.416  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus        30 ~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   85 (466)
T 2pz1_A           30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV--ADGEGWFPASFVRLR   85 (466)
T ss_dssp             CEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             ccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEehhHeeec
Confidence            56899999999999999999999999999999999999998  899999999999864

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.48  E-value=5.1e-14  Score=101.28  Aligned_cols=56  Identities=23%  Similarity=0.484  Sum_probs=52.4

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      ....++|+|||.++..+||+|++||+|.|+++.+.+||.|++. .|+.||||++||+
T Consensus       146 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~g~~G~~P~~yv~  201 (308)
T 3qwy_A          146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA-LGTTGLVPANYVQ  201 (308)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECT-TSCEEEEEGGGEE
T ss_pred             cceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeC-CCCeeEecccccc
Confidence            3568999999999999999999999999999999999999975 8899999999998

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.48  E-value=2.7e-14  Score=83.42  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=48.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcC--CCcEEEecCCCe
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQR--TGRTGLFPASFV  119 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~--~g~~G~~P~~yv  119 (122)
                      ...+.++|||.++...||+|++||++.|+++.  +.+||.++...  .+++|+||.||+
T Consensus        17 ~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           17 CELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             ceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            34689999999999999999999999999976  47899999842  347899999997

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.48  E-value=4.3e-14  Score=105.79  Aligned_cols=56  Identities=21%  Similarity=0.552  Sum_probs=52.8

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ..++|+|||+++.++||+|++||+|.|+++.++|||.|+..++|+.||||++||+.
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~   58 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP   58 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccc
Confidence            47999999999999999999999999999999999999997679999999999985

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.48  E-value=7.5e-14  Score=78.32  Aligned_cols=43  Identities=23%  Similarity=0.639  Sum_probs=39.7

Q ss_pred             CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          78 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        78 ~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      +++||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   44 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKL   44 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEeHHHEEEc
Confidence            4689999999999999999999999987  899999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.48  E-value=7.7e-14  Score=104.36  Aligned_cols=56  Identities=25%  Similarity=0.536  Sum_probs=51.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||+++.++||+|++||+|.|+++ .+.+||.|+.. +|+.|+||+|||++
T Consensus        11 ~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~-~g~~G~~P~~yv~~   67 (450)
T 1k9a_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQK   67 (450)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-TCCEEEEEGGGEEE
T ss_pred             CCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEEC-CCceeeechhcccc
Confidence            4579999999999999999999999999998 57899999985 69999999999986

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.20  E-value=4.5e-15  Score=106.63  Aligned_cols=58  Identities=24%  Similarity=0.623  Sum_probs=53.6

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+||+|++||+|.|+++.+++||.|++. .|++||||++||+.+
T Consensus       124 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yv~~~  181 (303)
T 2lqn_A          124 NLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNK-DGRVGMIPVPYVEKL  181 (303)
Confidence            4568999999999999999999999999999999999999976 899999999999864

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.44  E-value=7.6e-14  Score=95.54  Aligned_cols=53  Identities=26%  Similarity=0.637  Sum_probs=45.2

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .++|+|||.++..+||+|++||+|.|+++. +.+||.++.  .|+.||||.+||+.
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~~P~~yv~~   55 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEM   55 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEES--SSCEEEEEGGGEEC
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeecc--CCccceECCccccc
Confidence            589999999999999999999999999876 678999996  89999999999974

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.16  E-value=8.8e-15  Score=105.10  Aligned_cols=56  Identities=32%  Similarity=0.554  Sum_probs=50.6

Q ss_pred             ccEEEEeeeCCCCC--CCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNS--EYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~--~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++.  .+||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.+
T Consensus       237 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~--~g~~G~fP~~yv~~~  294 (303)
T 2lqn_A          237 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV--NGRKGLFPFTHVKIF  294 (303)
Confidence            45799999998554  779999999999999999999999998  899999999999864

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.43  E-value=1.2e-14  Score=104.64  Aligned_cols=56  Identities=21%  Similarity=0.432  Sum_probs=0.0

Q ss_pred             ccEEEEeeeCCC--CCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPP--NSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~--~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.+  .+++||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.|
T Consensus       247 ~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~--~g~~G~fP~~yv~~~  304 (308)
T 3qwy_A          247 PAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAEL--DGQIGSVPHTYLRFT  304 (308)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEE--CCeeEEechHHeEEe
Confidence            457899999954  55699999999999999998899999999  899999999999875

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.42  E-value=5.5e-14  Score=81.89  Aligned_cols=45  Identities=22%  Similarity=0.597  Sum_probs=41.3

Q ss_pred             CCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          76 PNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        76 ~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ++..+||+|++||+|.|+++.+++||.|+.  .|+.||||++||+.+
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~~   46 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKL   46 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEE--TTEEECCCGGGEEEC
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEE--CCcEEEEEeeEEEEc
Confidence            467889999999999999998999999997  899999999999864

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.42  E-value=3.3e-13  Score=100.95  Aligned_cols=56  Identities=21%  Similarity=0.426  Sum_probs=51.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||+++.++||+|++||+|.|++++ ++||.|++...|+.|+||++||+.
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~~-~~W~~~~~~~~g~~G~~P~~yv~~   63 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVAR   63 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEecC-CCCeEEEECCCCceEEecchhccc
Confidence            45799999999999999999999999999985 789999975589999999999975

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.39  E-value=4.1e-13  Score=101.63  Aligned_cols=55  Identities=13%  Similarity=0.374  Sum_probs=50.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||+++..+||+|++||+|.|+++. +.+||.++.  .|+.|+||+|||+.
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~--~~~~G~~P~~yv~~   98 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSNYITP   98 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEEC--SSCEEEEEGGGEEE
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeee--cCCcceeccccccc
Confidence            45799999999999999999999999999987 789999998  78899999999985

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.35  E-value=2.4e-12  Score=71.82  Aligned_cols=41  Identities=20%  Similarity=0.478  Sum_probs=38.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL  105 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~  105 (122)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|++
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            46899999999999999999999999999999999999986

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=99.32  E-value=1.4e-13  Score=104.36  Aligned_cols=57  Identities=33%  Similarity=0.717  Sum_probs=0.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++..+||+|.+||+|.|+.+. +.|||.|+.. .|+.||||++||+.|
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~-~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYVEAI  485 (486)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeC-CCCEEEEeHHHceeC
Confidence            45799999999999999999999999999877 4699999984 599999999999875

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=99.32  E-value=2e-13  Score=97.76  Aligned_cols=54  Identities=20%  Similarity=0.473  Sum_probs=48.2

Q ss_pred             EEEEeeeCCCCCCC-----ceecCCCCEEEEEEeCCCCeEEEEEcCC----CcEEEecCCCeE
Q psy9679          67 RFRCIVPYPPNSEY-----ELELRVGDLIYVHKKRDDGWYKGTLQRT----GRTGLFPASFVE  120 (122)
Q Consensus        67 ~~~al~dy~~~~~~-----eL~~~~gd~i~v~~~~~~gW~~g~~~~~----g~~G~~P~~yv~  120 (122)
                      +++|+|||+++.++     +|+|++||+|.|+++.+++||.|+....    ++.|+||++|++
T Consensus         3 ~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~   65 (295)
T 1kjw_A            3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV   65 (295)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHH
T ss_pred             EEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHH
Confidence            68999999998777     9999999999999999999999998643    378999999974

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=1.9e-12  Score=78.10  Aligned_cols=55  Identities=15%  Similarity=0.185  Sum_probs=48.9

Q ss_pred             cEEEEeeeC--CCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPY--PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy--~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      -.++|+|+|  ......+|+|++||+|.|+...+++||.+++. .|+.|+||.+|++.
T Consensus        40 ~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs-~GkyGyVP~~yl~~   96 (102)
T 1ri9_A           40 YSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNE-EGKYGYVLRSYLAD   96 (102)
T ss_dssp             SCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEET-TTEEEEEEGGGSCC
T ss_pred             EEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECC-CCCCCceeHHHhcc
Confidence            357778888  56678899999999999999999999999998 99999999999874

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=99.24  E-value=4.2e-12  Score=99.30  Aligned_cols=57  Identities=26%  Similarity=0.432  Sum_probs=49.3

Q ss_pred             cEEEEeeeCC---CCCCCceecCCCCEEEEEEe-----CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYP---PNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~---~~~~~eL~~~~gd~i~v~~~-----~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.   +.++++|+|++||+|.|...     .++|||.|++.++|++|+||++||..+
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~l  638 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVM  638 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEEC
Confidence            5799999999   67889999999999999887     468999999887999999999999864

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=99.09  E-value=1.7e-10  Score=83.48  Aligned_cols=55  Identities=24%  Similarity=0.468  Sum_probs=47.5

Q ss_pred             cccEEEEeeeCCCCCCC-------ceecCCCCEEEEEEeCCCCeEEEEEcC-CCcEEEecCCC
Q psy9679          64 VRERFRCIVPYPPNSEY-------ELELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASF  118 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~-------eL~~~~gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~y  118 (122)
                      ...+++|+|||++..++       +|+|++||++.|+++.+.+||.++... .|..|+||+++
T Consensus        37 ~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           37 VAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             ccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            35689999999998765       499999999999999999999999964 36789999865

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=99.05  E-value=8.8e-11  Score=70.21  Aligned_cols=54  Identities=20%  Similarity=0.313  Sum_probs=47.5

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCC--CCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~--~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      -.++|+|+ ...+..+|+|++|++|.|+...+  .|||.+++. .|+.|+||.+||+.
T Consensus        29 ~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~-~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           29 HLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTA-RGSYGYIKTTAVEI   84 (96)
T ss_dssp             EEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECT-TCCBCCCCGGGEEE
T ss_pred             EEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECC-CCCCCccchhhEEE
Confidence            47889998 45578899999999999999875  679999998 99999999999974

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.96  E-value=2.6e-09  Score=63.09  Aligned_cols=55  Identities=20%  Similarity=0.325  Sum_probs=45.1

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeC----CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~----~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+.+..+|.+...-||.+++||+|-|+.+.    +..||....  .|..||||++|++.+
T Consensus        18 ~LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdt--gg~~GyvPs~yLe~~   76 (92)
T 1ug1_A           18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN--GVTKGFVYSSFLKPY   76 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC--SSSEEEEEGGGEEEC
T ss_pred             heEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEEC--CCcEEeeEhhhceEc
Confidence            4567777777778889999999999999875    445666666  899999999999975

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.96  E-value=8.5e-10  Score=75.69  Aligned_cols=56  Identities=20%  Similarity=0.546  Sum_probs=49.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCC---eEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG---WYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~g---W~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .....++|+|.++...+|.++.|+++.|+.+.+.+   ||.++.  .++.|+||.+||+.+
T Consensus       170 ~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~--~~~~G~~P~~yv~~~  228 (239)
T 1ycs_B          170 KGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLGLY  228 (239)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEE--TTEEEEEEGGGEECC
T ss_pred             cceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEE--CCcEEEeehHHeeEC
Confidence            35689999999999999999999999999877554   999998  899999999999853

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.94  E-value=6.3e-10  Score=87.89  Aligned_cols=57  Identities=19%  Similarity=0.404  Sum_probs=49.1

Q ss_pred             cccEEEEeeeCCCCCCCc-----eecCCCCEEEEEEeCCCCeEEEEEcCC----CcEEEecCCCeE
Q psy9679          64 VRERFRCIVPYPPNSEYE-----LELRVGDLIYVHKKRDDGWYKGTLQRT----GRTGLFPASFVE  120 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~e-----L~~~~gd~i~v~~~~~~gW~~g~~~~~----g~~G~~P~~yv~  120 (122)
                      ...+++|+|||+++.+++     |+|++||++.|++..+.+||.++....    ++.|+||++|+.
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~  491 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV  491 (721)
T ss_pred             cceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHH
Confidence            346789999999998888     999999999999999999999998533    356999999874

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.92  E-value=1.1e-09  Score=81.17  Aligned_cols=57  Identities=18%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEe---CCCCeEEEEEcCCC----cEEEecCCCeE
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTLQRTG----RTGLFPASFVE  120 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~---~~~gW~~g~~~~~g----~~G~~P~~yv~  120 (122)
                      ...+++|+|||++.+..+|+|++||++.|++.   .+.+||.++....+    +.|+||++|+.
T Consensus       105 ~~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~  168 (391)
T 3tsz_A          105 DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA  168 (391)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHH
T ss_pred             cccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHH
Confidence            34578899999999999999999999999998   57889999986332    48999998864

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.89  E-value=8.8e-10  Score=79.17  Aligned_cols=55  Identities=16%  Similarity=0.200  Sum_probs=44.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCC---------eEEEEEcC----CCcEEEecCCCe
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDG---------WYKGTLQR----TGRTGLFPASFV  119 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~g---------W~~g~~~~----~g~~G~~P~~yv  119 (122)
                      ..+++|+|||+++.+.+|+|++||++.|++..++|         ||.++...    .+.+|++|.+|+
T Consensus         4 sfyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~   71 (308)
T 3kfv_A            4 SFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSR   71 (308)
T ss_dssp             CEEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHH
T ss_pred             cEEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHH
Confidence            45788999999999999999999999999987655         99998852    237899998775

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.83  E-value=4.1e-09  Score=79.59  Aligned_cols=56  Identities=18%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEe---CCCCeEEEEEcCCC----cEEEecCCCeE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTLQRTG----RTGLFPASFVE  120 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~---~~~gW~~g~~~~~g----~~G~~P~~yv~  120 (122)
                      ..+++|+|+|.+..+.+|+|++||++.|++.   .+.+||.++....+    +.|+||++|+.
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~  160 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA  160 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHH
Confidence            4578999999999999999999999999998   57789999986332    58999998864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.82  E-value=3.3e-09  Score=71.63  Aligned_cols=57  Identities=39%  Similarity=0.806  Sum_probs=50.4

Q ss_pred             CCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        62 ~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      +.....++|+|+|.++...+|.|++||++.|....+.+||.+..  .++.|+||.+|+.
T Consensus        11 p~~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~--~g~~gl~p~~~v~   67 (222)
T 3ehr_A           11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTS--KGRTGLIPSNYVA   67 (222)
T ss_dssp             --CCEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEE--TTEEEEEEHHHHH
T ss_pred             CCCceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhccc--CCcceeechhhcc
Confidence            33466899999999999999999999999999999999999999  8999999987753

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.73  E-value=1.2e-08  Score=72.84  Aligned_cols=53  Identities=25%  Similarity=0.538  Sum_probs=38.9

Q ss_pred             ccEEEEeeeCCCCCCC-----ceecCCCCEEEEEEeCCCCeEEEEEcC----CCcEEEecCC
Q psy9679          65 RERFRCIVPYPPNSEY-----ELELRVGDLIYVHKKRDDGWYKGTLQR----TGRTGLFPAS  117 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~-----eL~~~~gd~i~v~~~~~~gW~~g~~~~----~g~~G~~P~~  117 (122)
                      ..+++|+|||++..++     .|+|++||++.|.+..+++||.++...    ..+.|++|+.
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~   66 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK   66 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeCh
Confidence            4589999999987654     599999999999999999999998642    2347999974

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.60  E-value=6.7e-08  Score=68.69  Aligned_cols=53  Identities=15%  Similarity=0.182  Sum_probs=44.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.+.   ++++.+|+.+.+++..+..||.++.. .|..|++|++|+..
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~-~G~~g~vPs~~~~i  250 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSS-SGSEAAVPSVCFLV  250 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC----EEEEEGGGEEC
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcC-CCCEeeccceEEee
Confidence            4579999999774   79999999999999988889999986 88999999999864

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=98.28  E-value=3.2e-09  Score=77.24  Aligned_cols=55  Identities=15%  Similarity=0.251  Sum_probs=43.1

Q ss_pred             EEEEeeeCCC----CCCCceec--CCCCEEEEEEeCCCCeEEEEEc-CCCcEEEecCC-CeEE
Q psy9679          67 RFRCIVPYPP----NSEYELEL--RVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPAS-FVES  121 (122)
Q Consensus        67 ~~~al~dy~~----~~~~eL~~--~~gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~-yv~~  121 (122)
                      .++|+|+|.+    ..+.+|.|  ++||+|.|+++.++|||.|+.. +.|+.|+||.+ ||+.
T Consensus       268 ~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~  330 (341)
T 2dyb_A          268 LLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQ  330 (341)
T ss_dssp             CHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEE
T ss_pred             chhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEe
Confidence            3467899987    45566666  8999999999999999999872 24566699998 6654

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=98.09  E-value=3.8e-06  Score=63.20  Aligned_cols=53  Identities=15%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||..   .++.+.+||.+.+++..+..||.++.. +|..|+||+.|+..
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~-~G~~~~vPavcf~i  335 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGP-GGVDMLVPSVGLII  335 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECS-SSCCEEEEGGGEEC
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecC-CCCeeccceeEEec
Confidence            457999999994   789999999999999999999999986 78999999999854

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=96.61  E-value=0.0084  Score=33.40  Aligned_cols=51  Identities=18%  Similarity=0.205  Sum_probs=41.3

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCC----cEEEecCC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTG----RTGLFPAS  117 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g----~~G~~P~~  117 (122)
                      .+.+..||.+..++|+++..|++|.++..........-...+.    .+||+|..
T Consensus         9 ~m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~   63 (74)
T 1wfw_A            9 TMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGS   63 (74)
T ss_dssp             EEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGG
T ss_pred             cEEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCccccc
Confidence            4666899999999999999999999999887777777654333    46999853

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=96.59  E-value=0.0057  Score=34.51  Aligned_cols=37  Identities=30%  Similarity=0.569  Sum_probs=31.2

Q ss_pred             eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      -.+.+|+.+.|+++. .+|++.+.  .|..||+...|+..
T Consensus        25 ~~l~~G~~v~v~~~~-~~W~kV~~--~g~~GwV~~~yl~~   61 (74)
T 2krs_A           25 GTLRNNDKVEIIKEV-DGWYEIRF--NGKVGYASKSYITI   61 (74)
T ss_dssp             EEEETTCEEEEEEEE-TTEEEEEE--TTEEEEECSSSEEE
T ss_pred             EEECCCCEEEEEEEe-CCEEEEEE--CCeEEEEEhHHcCC
Confidence            457789999998875 57999998  69999999999875

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=96.38  E-value=0.0068  Score=34.43  Aligned_cols=37  Identities=14%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      -.+..|+.|.|+++. .+|++.+.  +|+.||+...|+..
T Consensus        27 ~~l~~G~~v~vl~~~-~~W~kV~~--~g~~GwV~~~yl~~   63 (76)
T 2kt8_A           27 GSLSGNTKVTIVGEE-GAFYKIEY--KGSHGYVAKEYIKD   63 (76)
T ss_dssp             EEECTTCEEEEEEEE-TTEEEEEE--TTEEEEEEGGGEEE
T ss_pred             EEECCCCEEEEEEEe-CCEEEEEE--CCEEEEEEhHHhCc
Confidence            456789999998864 57999998  79999999999864

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=96.06  E-value=0.002  Score=36.04  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=28.9

Q ss_pred             ecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          83 ELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        83 ~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .+.+|+.+.|+++. .+|++.+.  +|+.||+...|+..
T Consensus        27 ~l~~G~~v~v~~~~-~~W~~V~~--~G~~GwV~~~~l~~   62 (70)
T 2kq8_A           27 ALPQGQKVQVISEN-SGWSKINY--NGQTGYIGTRYLSK   62 (70)
T ss_dssp             CCCSSSSCCCCEEE-TTEEEEEE--TTEEEEEETTSCSC
T ss_pred             EECCCCEEEEEEec-CCEEEEEE--CCEEEEEEhHHccc
Confidence            45677888777764 67999998  89999999998764

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=95.13  E-value=0.011  Score=33.48  Aligned_cols=23  Identities=9%  Similarity=0.111  Sum_probs=20.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVG   87 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~g   87 (122)
                      ...++|+|||+++..+||+|.+-
T Consensus        52 ~~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A           52 KELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             CCEEEESSCCCCSSCCCCCSCCC
T ss_pred             CceEEECCCcCCCCCCccccCCC
Confidence            35899999999999999999863

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=92.87  E-value=0.1  Score=36.97  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             ceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          81 ELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        81 eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .-.+..|+.|.|+++ + ||++.+.. +|..||++..++..
T Consensus        34 ~~~l~~G~~v~Vl~~-~-gW~~V~~~-dG~~GwV~~~~l~~   71 (306)
T 3npf_A           34 STQALLGMPVKVLQY-N-GWYEIQTP-DDYTGWVHRMVITP   71 (306)
T ss_dssp             EEEEETTCEEEEEEE-S-SEEEEECT-TSCEEEEEGGGEEE
T ss_pred             eEEEcCCCEEEEEEE-C-CEEEEEcC-CCCEEEEEhHHeee
Confidence            356678999999987 3 69999875 89999999988753

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=92.84  E-value=0.052  Score=33.96  Aligned_cols=25  Identities=24%  Similarity=0.603  Sum_probs=19.3

Q ss_pred             ceecCCCCEEEEEEeCCC----CeEEEEE
Q psy9679          81 ELELRVGDLIYVHKKRDD----GWYKGTL  105 (122)
Q Consensus        81 eL~~~~gd~i~v~~~~~~----gW~~g~~  105 (122)
                      ...|..||.|.|..+.++    |||.|+.
T Consensus        58 ~~~f~~gd~VEV~~~~~d~ep~gWw~a~I   86 (128)
T 3h8z_A           58 NKEITEGDEVEVYSRANEQEPCGWWLARV   86 (128)
T ss_dssp             --CCCTTCEEEEEECC---CCCEEEEEEE
T ss_pred             ccCCCCCCEEEEEecCCCCCcCccEEEEE
Confidence            356899999999998766    8999987

>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A

Probab=88.67  E-value=0.86  Score=31.24  Aligned_cols=38  Identities=13%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             eecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679          82 LELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV  119 (122)
Q Consensus        82 L~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv  119 (122)
                      -.+..|+.+.|+++..++|.+.+...+|..||++..++
T Consensus        37 tq~l~Ge~~~Vl~~~~~~w~~v~~~~dgy~Gwv~~~~l   74 (235)
T 2hbw_A           37 TQAAVGRHLQVTSNQQGAAVEVCLCEDDYPGWLSLGDL   74 (235)
T ss_dssp             EEECTTCEEEEEEEEETTEEEEEETTTTEEEEEEGGGG
T ss_pred             eeecCCCEEEEEEecCCCEEEEEECcCCeeeeeehhhc
Confidence            46678999999976667899999876899999987543

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=84.20  E-value=1.2  Score=31.53  Aligned_cols=37  Identities=22%  Similarity=0.411  Sum_probs=28.6

Q ss_pred             ecCCCCEEEEEEeCCCCeEEEEE-------cCCCcEEEecCCCeE
Q psy9679          83 ELRVGDLIYVHKKRDDGWYKGTL-------QRTGRTGLFPASFVE  120 (122)
Q Consensus        83 ~~~~gd~i~v~~~~~~gW~~g~~-------~~~g~~G~~P~~yv~  120 (122)
                      .+..|+.|.|+++ +.+|.+.+.       ..+|..||++..++.
T Consensus        63 qll~Ge~V~Vl~~-~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~  106 (311)
T 3h41_A           63 QALLGQEVTVVDK-KGDWVKVLVHGQPTPRNEEGYPGWMPEKQLT  106 (311)
T ss_dssp             EEETTCEEEEEEE-ETTEEEEEETTCCBTTBSSCEEEEEEGGGEE
T ss_pred             eecCCCEEEEEEe-eCCEEEEEECCcccccCCCCcEEEEEHHHcC
Confidence            4445999999987 467999985       237889999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	5e-18
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	2e-17
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	8e-17
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	9e-17
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	1e-16
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	2e-16
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-16
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-16
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	3e-16
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-16
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	9e-16
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	1e-15
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-15
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	7e-15
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-14
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	2e-14
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	4e-14
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	5e-14
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	7e-14
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-13
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	1e-13
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-13
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-13
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	3e-13
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	6e-13
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	7e-13
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-12
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	2e-12
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	2e-12
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	2e-12
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	3e-12
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	3e-12
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-12
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	8e-12
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	8e-12
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	1e-11
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-11
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	5e-11
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	1e-10
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	1e-10
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-10
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-09
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	1e-08
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	3e-07
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	4e-07
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	9e-06
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	5e-05
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	2e-04

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (171), Expect = 5e-18
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + FR +  Y      E+  + GD I   +  D+GW  GT+QRTGRTG+ PA++VE
Sbjct: 4   KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (168), Expect = 2e-17
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 60  PVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASF 118
           P   V + +  I P P      L L  GD++ + K      W++G    T   G FP + 
Sbjct: 5   PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 64

Query: 119 VESF 122
           V  +
Sbjct: 65  VHPY 68

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (163), Expect = 8e-17
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P     +     Y    + EL     D I   +  DD W+ G L++ G  GLFP+++V 
Sbjct: 1   PWATAEY----DYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.6 bits (163), Expect = 9e-17
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E    +  Y   S  E+ ++ GD++ +    +  W+K   +   R G  PA++V+
Sbjct: 1   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVK 53

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (162), Expect = 1e-16
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           PT +   + +  Y    E EL      +I   +K++ GW++G      +   FP+++VE
Sbjct: 3   PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVE 60

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 2e-16
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +   +  Y      +LE + GD+I V  K ++ W +G     G+ G+FP  FVE
Sbjct: 6   SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFVE 58

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 2e-16
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           F  +  Y   +E +L  + G+ + +    +  W+      TG+TG  P+++V 
Sbjct: 5   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (160), Expect = 2e-16
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES 121
           R R +  +    + EL  + G+LI V    D  W++G       TGLFP++FV +
Sbjct: 4   RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNFVTT 56

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (159), Expect = 3e-16
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF 122
           E  R +  +  N E +L  + GD++ +  K ++ W+       G+ G+ P  +VE +
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEKY 57

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (159), Expect = 4e-16
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  + P  + EL  R GD I+V    D  W+KG     G+TG+FP ++V 
Sbjct: 5   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVT 54

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (156), Expect = 9e-16
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           F  +  Y   +E +L    G+   +    +  W++     TG TG  P+++V 
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (156), Expect = 1e-15
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           R +  +    E EL  R G+++ V    +  W+ G L    + GLFPA++V 
Sbjct: 5   RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVA 54

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 63.9 bits (156), Expect = 1e-15
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  + P    EL  + GD+I +  K D  W++G L    R G+FP+++V 
Sbjct: 6   QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVC 55

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.7 bits (152), Expect = 7e-15
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 13/79 (16%)

Query: 55  KPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKK-----RDDGWYKGTLQR-- 107
             +    P    + +    Y      EL+L+ GD++ V        +D+GW  G  +   
Sbjct: 2   TGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDW 61

Query: 108 ------TGRTGLFPASFVE 120
                     G+FP +F E
Sbjct: 62  NQHKELEKCRGVFPENFTE 80

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 1e-14
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 41  SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGW 100
           +S    +        P   PV  V   +     Y  N+E EL    G LI V  K D  W
Sbjct: 14  ASHVKLLGPSSERATPAFHPVCQVIAMY----DYAANNEDELSFSKGQLINVMNKDDPDW 69

Query: 101 YKGTLQRTGRTGLFPASFVE 120
           ++G +   G TGLFP+++V+
Sbjct: 70  WQGEI--NGVTGLFPSNYVK 87

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 2e-14
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 64  VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +R     +  Y      +L  + GD + V ++  + W       T + G  P+++V 
Sbjct: 3   IRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWK-ARSLATRKEGYIPSNYVA 58

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 4e-14
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ++   +  Y P +  +L+LR GD  ++ ++ +  W++    + G+ G  P+++V 
Sbjct: 9   KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVT 62

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (145), Expect = 5e-14
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 73  PYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
            +   ++ EL  + GD++ V +++ D  WYK  L   G+ G  P +++E
Sbjct: 8   DFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIE 54

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (144), Expect = 7e-14
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E +  + PY      +L    G+ I V +K D  W+ G++    R+G+FP+++V+
Sbjct: 9   EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI--GDRSGIFPSNYVK 60

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 1e-13
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           +    +   +E EL +  GD+IYV +  + GW++GTL   GRTG FP+++V 
Sbjct: 14  KARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVR 63

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (143), Expect = 1e-13
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 66  ERFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
           ++ + I P+   N++  L    GD++ +    + DGW  G    T   G FP+S+ +
Sbjct: 8   QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 2e-13
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           P        +  Y P+ + +L    G+ + + ++  + W       TG+ G  P +FV 
Sbjct: 3   PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWK-AQSLTTGQEGFIPFNFVA 60

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (141), Expect = 2e-13
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 62  PTVRERFRCIVPY-PPNSEYELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFP 115
           P+  E  R +  + P N E E+ L+ GDL+ +  K+D       W+K    + G  G  P
Sbjct: 2   PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIP 60

Query: 116 ASFVE 120
            +++E
Sbjct: 61  YNYIE 65

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 3e-13
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 15/70 (21%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKK---------------RDDGWYKGTLQRTGR 110
            ++R +  Y    E +++L +GD++ V+K                 + GW  G  + TG 
Sbjct: 4   YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63

Query: 111 TGLFPASFVE 120
            G FP ++VE
Sbjct: 64  RGDFPGTYVE 73

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 6e-13
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
            T   + + +       + EL    G +          GW +GTL   G+TGL P ++VE
Sbjct: 7   GTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVE 64

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (138), Expect = 7e-13
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E    +  +     ++L L  G    + +K D  W++    + G  G  P+++V 
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVT 56

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 1e-12
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ---RTGRTGLFPASFVE 120
           E  +    Y  +   +L L  G LI + KK   GW++G LQ   +  + G FPAS V+
Sbjct: 8   EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 2e-12
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 64  VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDD--GWYKGTLQRTGRTGLFPASFVE 120
           V    + + P+   +E EL    G+ + V +K ++   W+K    R G+ GL P ++V 
Sbjct: 5   VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVV 62

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (134), Expect = 2e-12
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 68  FRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVE 120
           F  +  +  + +  L +  G+ + V        W +   Q     G  P++++ 
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA--QTKNGQGWVPSNYIT 54

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.5 bits (134), Expect = 2e-12
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRD--DGWYKGTLQRTGRTGLFPASFVE 120
           +   +  +      +L  R GD+I + KK D  + W+ G +   GR G+FPA++VE
Sbjct: 3   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVE 56

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 3e-12
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 64  VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + + +R I  Y   S  E+ L  GD++ V +K + GW+    Q   + G  PASF+E
Sbjct: 1   ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFC--QMKAKRGWIPASFLE 55

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 3e-12
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           E +  I  Y      E+ L  G+ + V  K  DGW+    ++   TG FP+ +++
Sbjct: 1   EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKDDVTGYFPSMYLQ 53

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 5e-12
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + + +  +    +  L     D+I V  ++ + W+ G +   G  G FP S+V+
Sbjct: 12  KAQALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVH--GGRGWFPKSYVK 62

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 54.1 bits (130), Expect = 8e-12
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             +  Y  N   EL LR  +  Y+    +  W++   +  G  G  P+S++ 
Sbjct: 2   IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKN-GHEGYAPSSYLV 52

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (130), Expect = 8e-12
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYVHKKRDD---GWYKGTLQRTGRTGLFPASFVE 120
             +  Y P ++ EL ++ GD + +  + D+    W+   L    + G  P + + 
Sbjct: 8   YALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLG 60

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 1e-11
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 67  RFRCIVPYPPNSEYELELRVGDLIY-VHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
                  +   +E +L    GD++  V   +D  WYK    + GR G+ PA++V+
Sbjct: 8   ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN-KVGREGIIPANYVQ 61

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 1e-11
 Identities = 7/63 (11%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 62  PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD----DGWYKGTLQRTGRTGLFPAS 117
               + +  +  +   +  EL +     + + + +D      W+    +  G+ G  P++
Sbjct: 10  AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLA--EVNGKKGYVPSN 67

Query: 118 FVE 120
           ++ 
Sbjct: 68  YIR 70

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 5e-11
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 49  SDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRT 108
           S      P+P       E +  I  Y      E+ L  G+ + V  K  DGW+    ++ 
Sbjct: 1   SPDETEDPEPNYAG---EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI--RKD 55

Query: 109 GRTGLFPASFVE 120
             TG FP+ +++
Sbjct: 56  DVTGYFPSMYLQ 67

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (122), Expect = 1e-10
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 69  RCIVPYPPNSEYELELRVGDLIYV-HKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           + +  Y    + E+ +  GD I +  +    GW K     TG TGL P +++ 
Sbjct: 3   KVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (122), Expect = 1e-10
 Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 65  RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
           ++  +    +   +  EL +   D++ +   R   W       +G +G  P + ++
Sbjct: 1   KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVR--NASGDSGFVPNNILD 54

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 6e-10
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE 120
             +R + P+   +  E+    GD+I V +K             G  G FP ++VE
Sbjct: 6   SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 2e-09
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 41  SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPN--SEYELELRVGDLIYVHKKRDD 98
           SS SS  +     ++     V     R+       PN   E EL L  G  +YV+   D+
Sbjct: 2   SSGSSGTS-----KQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDE 56

Query: 99  GWYKGTLQRTGRTGLFPASFVE 120
             +       G+ GL P++FV+
Sbjct: 57  DGFYEGELLDGQRGLVPSNFVD 78

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 46.9 bits (111), Expect = 1e-08
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 11/74 (14%)

Query: 54  RKPKPQPVPTVRERFRCIVPYPPN-------SEYELELRVGDLIYVHKKRDDGWYKGTLQ 106
            K K +PV       R  V Y              +     D ++V +K ++ W+ G L 
Sbjct: 13  EKAKTKPV---AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLV 69

Query: 107 RT-GRTGLFPASFV 119
           +     G  P+   
Sbjct: 70  KEGCEIGFIPSPVK 83

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (100), Expect = 3e-07
 Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 4/61 (6%)

Query: 66  ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKG----TLQRTGRTGLFPASFVES 121
                I  Y    E E+ +  G+++ V               +       G  P S +  
Sbjct: 8   STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67

Query: 122 F 122
           F
Sbjct: 68  F 68

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 4e-07
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 17/89 (19%)

Query: 41  SSASSPVASDPNNRKPKPQPVPTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKRD--- 97
             A   + +D     P              +  Y       L +  G ++YV  K     
Sbjct: 5   KLADRKLCADQECSHPI--------SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRG 56

Query: 98  DGWYKGTLQ------RTGRTGLFPASFVE 120
             ++ G++Q         R G FP+S V 
Sbjct: 57  RLFWGGSVQGDYYGDLAARLGYFPSSIVR 85

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 9e-06
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 76  PNSEYELELRVGDLIYVHKKRDDGWYKGTL----QRTGRTGLFPASFVE 120
                 L  R GD+++V    D+ W++         T   G  P+    
Sbjct: 17  GFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-05
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 54  RKPKPQPVPTVRERFRCIVPY-------PPNSEYELELRVGDLIYVHKKRDDGWYKGTLQ 106
            + K +PV       +  V Y        P     +     D +++ +K ++ W+ G L 
Sbjct: 15  ERAKSKPV---AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLV 71

Query: 107 RT-GRTGLFPASFVE 120
           +     G  P+    
Sbjct: 72  KEGCEIGFIPSPLRL 86

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 55  KPKPQPVPTVRERFRCIVPYPPN-------SEYELELRVGDLIYVHKKRDDGWYKGTLQR 107
           + K +PV       R  V Y              +     D +++ +K  + W+ G L +
Sbjct: 16  RAKHKPV---AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVK 72

Query: 108 TGRTGLFPASFVE 120
            G    F  S   
Sbjct: 73  EGGDIAFIPSPQR 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.84
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.84
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.84
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.83
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.83
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.82
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.82
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.81
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.81
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.81
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.81
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.8
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.8
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.8
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.8
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.8
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.8
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.79
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.79
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.78
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.78
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.78
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.77
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.77
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.77
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.76
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.76
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.76
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.76
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.76
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.76
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.75
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.75
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.75
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.75
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.75
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.74
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.73
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.73
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.73
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.66
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.65
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.52
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.36
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	97.55

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.7e-21  Score=106.87  Aligned_cols=57  Identities=28%  Similarity=0.464  Sum_probs=53.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ++|+|+|||.++.++||+|++||+|.|+++.+++||.|++.++|++|+||++||+.+
T Consensus         1 P~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            369999999999999999999999999999999999999987899999999999975

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.9e-21  Score=106.28  Aligned_cols=55  Identities=29%  Similarity=0.623  Sum_probs=52.5

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+|+|+|||.+++++||+|++||+|.|++..+++||.|+.  .|+.|+||++||++|
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL--HNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEEHHHEEEc
Confidence            5799999999999999999999999999999999999998  899999999999986

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.2e-21  Score=105.00  Aligned_cols=54  Identities=33%  Similarity=0.735  Sum_probs=51.8

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      +++|+|||.++.++||+|++||+|.|+++.+++||.|+.  .|++||||++||++|
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE--CCeEEEEEHhHEEEC
Confidence            689999999999999999999999999999999999999  899999999999986

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.83  E-value=5.1e-21  Score=104.88  Aligned_cols=56  Identities=29%  Similarity=0.695  Sum_probs=52.8

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|||||.++.++||+|++||+|.|++..++|||.|+.  .|+.||||++||+++
T Consensus         2 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yvep~   57 (58)
T d1sema_           2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL--NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCeEEEEEhhhEEEC
Confidence            35799999999999999999999999999999999999998  899999999999975

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=7.7e-21  Score=103.11  Aligned_cols=54  Identities=22%  Similarity=0.552  Sum_probs=51.6

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++|+|||.++.++||+|++||+|.|+++.++|||.|+.  .|+.||||++||+.|
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~--~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEE--CCeEEEEeHHHEEEC
Confidence            589999999999999999999999999999999999998  899999999999976

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.4e-21  Score=105.90  Aligned_cols=58  Identities=40%  Similarity=0.725  Sum_probs=54.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.+++.++|+.|+||++||+.|
T Consensus         3 G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             CcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            3468999999999999999999999999999999999999987899999999999976

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=8.4e-21  Score=104.00  Aligned_cols=55  Identities=33%  Similarity=0.668  Sum_probs=51.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .++++|+|||.++.++||+|++||+|.|+++.+++||.|++  .|+.||||++||+.
T Consensus         2 ~rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           2 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN--HRGTGLFPSNFVTT   56 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE--TTEEEEEEGGGEES
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEE--CCeEEEEehHhEee
Confidence            46899999999999999999999999999999999999998  89999999999974

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.4e-20  Score=111.76  Aligned_cols=56  Identities=36%  Similarity=0.662  Sum_probs=52.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|||||+++.++||+|++||+|.|+++.++|||+|+.  .|++||||++||+.+
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~nyVe~~   89 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI--NGVTGLFPSNYVKMT   89 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBS--SSCBCCEETTSEEEC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEE--CCeEEEEchHHEEEC
Confidence            45799999999999999999999999999999999999997  899999999999875

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2e-20  Score=102.13  Aligned_cols=55  Identities=25%  Similarity=0.653  Sum_probs=51.8

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.++.. .|+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-EGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-TSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC-CCCEEEEcHHHeEE
Confidence            47899999999999999999999999999999999999986 78999999999986

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.6e-20  Score=99.64  Aligned_cols=52  Identities=27%  Similarity=0.462  Sum_probs=49.4

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeE
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVE  120 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~  120 (122)
                      .++|+|+|.++.++||+|++||+|.|+++.++|||.|+.  +|++||||++||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~--~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK--DDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEES--SSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEE--CCcEeEecHHhCC
Confidence            468999999999999999999999999999999999996  8999999999996

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.7e-20  Score=101.14  Aligned_cols=56  Identities=21%  Similarity=0.504  Sum_probs=52.8

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++|+|||.++.++||+|++||+|.|+++.+++||.++..++|++||||++||++|
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            47899999999999999999999999999999999999987899999999999975

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-20  Score=104.45  Aligned_cols=56  Identities=30%  Similarity=0.658  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|||+|.++.++||+|++||+|.|++..+++||.|+.  .|+.||||++||+++
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~--~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES--KGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEEC--SSCEEEECGGGCCCS
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEchHHeEEC
Confidence            45799999999999999999999999999999999999998  899999999999863

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.3e-21  Score=104.30  Aligned_cols=56  Identities=32%  Similarity=0.665  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|+.  .|++||||++||+++
T Consensus         2 l~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~--~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           2 LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM--KAKRGWIPASFLEPL   57 (58)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEE--CCCCCCCCGGGCCCS
T ss_pred             ceEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEE--CCCCcEEcHhHEEEC
Confidence            35789999999999999999999999999999999999998  899999999999875

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6.6e-20  Score=100.38  Aligned_cols=55  Identities=31%  Similarity=0.693  Sum_probs=50.5

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ++|+|+|||.++.++||+|++||+|.|+++.  +.+||.++.  +|++||||++||+.|
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~--~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE--TTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEE--CCcEEEEcHHHEEEC
Confidence            4799999999999999999999999999876  457999998  899999999999976

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.80  E-value=3e-20  Score=100.00  Aligned_cols=53  Identities=23%  Similarity=0.463  Sum_probs=49.6

Q ss_pred             EEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          68 FRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        68 ~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ++|+|||.++.++||+|++||+|.|+++.+++||.++.. .|++||||++||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~-~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECT-TSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeC-CCCEEEEeHHHEeC
Confidence            579999999999999999999999999999999999875 88999999999975

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-19  Score=104.84  Aligned_cols=58  Identities=33%  Similarity=0.595  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEE---cCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTL---QRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~---~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|+.   .+.+++||||++||+.+
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~   67 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL   67 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEEC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEEC
Confidence            45899999999999999999999999999999999999986   23578999999999875

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-20  Score=106.62  Aligned_cols=56  Identities=36%  Similarity=0.761  Sum_probs=52.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|++  .+++||||++||+.|
T Consensus        10 ~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yv~~i   65 (76)
T d1ujya_          10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL--NGRTGWFPSNYVREI   65 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEE--TTEEEEECTTTSEEC
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEE--CCcEEEEchHHEEEC
Confidence            34789999999999999999999999999999999999998  899999999999875

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.4e-20  Score=104.35  Aligned_cols=58  Identities=28%  Similarity=0.566  Sum_probs=50.7

Q ss_pred             cccEEEEeeeCCCCCCC-ceecCCCCEEEEEEeCC-----CCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEY-ELELRVGDLIYVHKKRD-----DGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~-eL~~~~gd~i~v~~~~~-----~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|+|||.++..+ ||+|++||+|.|+++.+     .|||.|+.. +|+.||||+|||+.|
T Consensus         4 ~~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~-~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           4 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII   67 (67)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT-TSCEEEEEGGGEEEC
T ss_pred             cCEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeC-CCCEEEEEHHHEEEC
Confidence            35689999999998764 99999999999998753     589999975 899999999999976

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.2e-20  Score=102.19  Aligned_cols=57  Identities=21%  Similarity=0.526  Sum_probs=53.2

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.++.++||+|++||+|.|+++.+++||.++..++|++||||++||+++
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~   59 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS   59 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            468999999999999999999999999999989999999987899999999999874

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-19  Score=103.83  Aligned_cols=55  Identities=22%  Similarity=0.557  Sum_probs=50.7

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.++.++||+|++||+|.|+++. ++||.+++  .|++||||.+||+.+
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~~-~~ww~g~~--~g~~G~fP~~yve~i   64 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEV--HGGRGWFPKSYVKII   64 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEES--TTCCCEEEGGGEEEC
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEcc-CCeEEEEE--CCcEEEEchhhEEEC
Confidence            55899999999999999999999999999884 68999997  899999999999975

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.6e-19  Score=101.62  Aligned_cols=56  Identities=20%  Similarity=0.407  Sum_probs=51.8

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..++|+|||.++..+||+|++||+|.|+.+.+.+||.++.. .|+.||||++||+.+
T Consensus         3 ~~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~~P~~yV~~~   58 (67)
T d1gl5a_           3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-YGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS-SSCEEEEETTSEESS
T ss_pred             EEEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEEC-CCCEEEEEhHHeEEe
Confidence            36899999999999999999999999999999999999875 789999999999863

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=9.5e-20  Score=103.89  Aligned_cols=58  Identities=24%  Similarity=0.512  Sum_probs=50.8

Q ss_pred             ccEEEEeeeCCCC-CCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPN-SEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~-~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+|+|||||.+. +++||+|++||+|.|+.+ ..++||.|++.+++++||||++||+.|
T Consensus         7 ~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i   66 (72)
T d1spka_           7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEEC
Confidence            4589999999985 578999999999999865 467899999877899999999999975

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.3e-19  Score=110.14  Aligned_cols=56  Identities=27%  Similarity=0.429  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.+..++||+|++||+|.|+++.++|||.|+.  .|++||||++||+.+
T Consensus        14 g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~--~g~~G~~P~~yv~~~   69 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK--DDVTGYFPSMYLQKS   69 (118)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE--TTEEEEEEGGGEEET
T ss_pred             CcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEE--CCeEEEEehhhEEEC
Confidence            45789999999999999999999999999999999999998  899999999999864

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.8e-19  Score=100.70  Aligned_cols=57  Identities=26%  Similarity=0.517  Sum_probs=51.3

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.  +.+||.++.. +|+.||||++||+.+
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~-~G~~G~vP~~yv~~~   64 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVL   64 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEET-TTEEEEEETTSEEEC
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEEC-CCCEEEEChHHEEEC
Confidence            45799999999999999999999999999875  3589999986 789999999999875

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.7e-19  Score=97.03  Aligned_cols=54  Identities=13%  Similarity=0.383  Sum_probs=48.4

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeCCC-CeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKRDD-GWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~-gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++|||||.++.++||+|++||+|.|+++.++ +||.++.  .+++||||++||+++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~--~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEEC--SSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEE--CCCEeEEchhheEEC
Confidence            58999999999999999999999999987655 5778887  889999999999975

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.7e-20  Score=106.98  Aligned_cols=58  Identities=31%  Similarity=0.672  Sum_probs=51.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC---------------CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR---------------DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~---------------~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|||+|.+..++||+|++||+|.|+.+.               ++|||.|++.++|++||||++||+.|
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i   75 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI   75 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEc
Confidence            35799999999999999999999999998642               46899999987899999999999874

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.8e-20  Score=103.80  Aligned_cols=57  Identities=21%  Similarity=0.531  Sum_probs=52.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+.+||.++.. .|++||||++||+.+
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~g~~G~vP~~yv~~~   64 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEA   64 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT-TSCBCCEETTTBCCS
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC-CCCEEEEcHHHeEEC
Confidence            558999999999999999999999999999989999999874 889999999999864

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.7e-19  Score=98.85  Aligned_cols=56  Identities=20%  Similarity=0.502  Sum_probs=50.0

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCC---CCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRD---DGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~---~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.+   .|||.|++  .|++|+||++||+.+
T Consensus         4 ~g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~--~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           4 KGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL--NDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEE--TTEEEEEEGGGEECC
T ss_pred             CCEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEE--CCeEEEEchHHhEeC
Confidence            347899999999999999999999999997653   47999998  899999999999864

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.4e-19  Score=98.42  Aligned_cols=55  Identities=16%  Similarity=0.388  Sum_probs=49.9

Q ss_pred             cEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          66 ERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        66 ~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .+++|+|||.++..+||+|++||+|.|+++. ++||.++.. .|+.|+||++||+.|
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~-~g~~G~~P~nyve~i   56 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNA-SGDSGFVPNNILDIM   56 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECT-TSCEEEEEGGGEEEE
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEc-CCCEEEECHHHeEEC
Confidence            4799999999999999999999999999875 579999886 789999999999874

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-18  Score=97.54  Aligned_cols=57  Identities=21%  Similarity=0.423  Sum_probs=51.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++ +++||.+++..+|+.||||++||+.+
T Consensus         4 ~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~   60 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   60 (65)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEET
T ss_pred             cEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEEC
Confidence            4578999999999999999999999999986 45799998877899999999999874

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-18  Score=100.86  Aligned_cols=56  Identities=11%  Similarity=0.431  Sum_probs=50.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC----CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~----~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|||||.++.++||+|++||+|.|+++.    ..+||.++.  .|+.||||++||+.+
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~--~g~~G~vP~~yv~~~   72 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV--NGKKGYVPSNYIRKT   72 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEES--SSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEE--CCCEEEEehhhEEEC
Confidence            34799999999999999999999999999864    468999986  899999999999875

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.8e-19  Score=99.39  Aligned_cols=57  Identities=25%  Similarity=0.491  Sum_probs=50.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...|+|+|||.++.++||+|++||+|.|+++. +.+||.+++. +|+.||||.+||+.+
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~-~g~~G~~P~~yve~~   63 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-VGREGIIPANYVQKR   63 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-TCCEEEEEGGGEEEC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeC-CCCEEEEchHHeEEc
Confidence            34799999999999999999999999999875 5678889874 789999999999874

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-18  Score=96.16  Aligned_cols=56  Identities=21%  Similarity=0.509  Sum_probs=50.6

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ...++|+|||.++.++||+|++||+|.|+++.+ +||.++...+|++||||++||++
T Consensus         6 ~~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CcEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            457999999999999999999999999998865 58888887689999999999986

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.9e-19  Score=96.59  Aligned_cols=53  Identities=26%  Similarity=0.637  Sum_probs=44.5

Q ss_pred             EEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          67 RFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        67 ~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      .|+|+|||.++.++||+|++||+|.|+++. +++||.++.  .|++||||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~--~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL--NGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEES--SSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEE--CCcEEEEehhhEEE
Confidence            589999999999999999999999988764 678898987  89999999999973

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=7.9e-19  Score=100.57  Aligned_cols=58  Identities=17%  Similarity=0.228  Sum_probs=52.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcC----CCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQR----TGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~----~g~~G~~P~~yv~~~  122 (122)
                      ..+++|+|||.+..++||+|++||+|.|+++.+++||.+++..    .|++||||++||+++
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~   68 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPF   68 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBC
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEEC
Confidence            4589999999999999999999999999999999999998753    368999999999875

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.4e-18  Score=98.00  Aligned_cols=58  Identities=22%  Similarity=0.437  Sum_probs=50.0

Q ss_pred             ccEEEEeeeCCC------CCCCceecCCCCEEEEEEe-CCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPP------NSEYELELRVGDLIYVHKK-RDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~------~~~~eL~~~~gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      .++++|+++|.+      ++.+||+|++||+|.|++. .++|||.|++.++|+.||||++||+++
T Consensus         4 ~Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           4 MPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CCEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            346788888865      6778999999999999976 467999999987899999999999974

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.9e-20  Score=104.51  Aligned_cols=58  Identities=22%  Similarity=0.505  Sum_probs=51.8

Q ss_pred             cccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...+++|||+|.++.++||+|++||+|.|+++.+++||.|++. .++.||||++||+++
T Consensus         5 ~~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~~~~G~fP~~yv~~~   62 (71)
T d2hspa_           5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG-GKKQLWFPSNYVEEM   62 (71)
T ss_dssp             SSSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCS-SCCSCCEETTTCCSC
T ss_pred             CcEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEEC-CeEEEEEchHHeEEc
Confidence            4557999999999999999999999999999999999999864 666679999999864

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.6e-19  Score=100.64  Aligned_cols=56  Identities=27%  Similarity=0.573  Sum_probs=50.2

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ..+++|||||.++.++||+|++||+|.|+++. +++||.++.  .|+.||||++||+.|
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~--~g~~G~~P~~yve~i   66 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL--NGKTGLIPENYVEFL   66 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEES--SSCEEEEEGGGEEEC
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEe--CCCEEEEchHHEEEC
Confidence            44799999999999999999999999988875 567999987  899999999999975

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-18  Score=103.63  Aligned_cols=56  Identities=30%  Similarity=0.749  Sum_probs=50.5

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC--CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR--DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~--~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|||||.++.++||+|++||+|.|+++.  +.+||.++.  +|++||||++||+.+
T Consensus         5 ~~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~--~g~~G~~P~~Yve~~   62 (93)
T d1uffa_           5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF--QGNFGWFPCNYVEKM   62 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE--TTEEEEEETTTEEEC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEe--CCcEEEEchHHEEEC
Confidence            34789999999999999999999999999876  467999987  899999999999874

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5e-19  Score=99.93  Aligned_cols=55  Identities=27%  Similarity=0.659  Sum_probs=50.1

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|||.++.++||+|++||+|.|+++. ++||.+++  .+++||||++||+.+
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~-~~Ww~~~~--~g~~G~vP~~yv~~~   62 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGSI--GDRSGIFPSNYVKPK   62 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEEE-TTEEEECS--TTCCEEECGGGCEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEec-CCEEEEEE--CCcEEEEchhhEEEC
Confidence            46899999999999999999999999999874 57999997  899999999999874

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.4e-18  Score=102.31  Aligned_cols=56  Identities=20%  Similarity=0.322  Sum_probs=50.9

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEeC----CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKKR----DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~----~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ...++|+|+|.++.++||+|++||+|.|+++.    +.+||+++.  .|++||||++||+.+
T Consensus        17 ~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~--~g~~G~~P~~yv~~~   76 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN--GVTKGFVYSSFLKPY   76 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC--SSSEEEEEGGGEEEC
T ss_pred             CeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEe--cccEEEEEhhhceec
Confidence            45799999999999999999999999999975    378999998  899999999999864

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=9.8e-19  Score=102.22  Aligned_cols=61  Identities=28%  Similarity=0.559  Sum_probs=51.6

Q ss_pred             CCcccEEEEeeeCCCCCCCceecCCCCEEEEEEeC-----CCCeEEEEEcC--------CCcEEEecCCCeEEC
Q psy9679          62 PTVRERFRCIVPYPPNSEYELELRVGDLIYVHKKR-----DDGWYKGTLQR--------TGRTGLFPASFVESF  122 (122)
Q Consensus        62 ~~~~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~~-----~~gW~~g~~~~--------~g~~G~~P~~yv~~~  122 (122)
                      +....+++|+|+|.++.++||+|++||+|.|+.+.     ++|||.|+..+        +|+.||||+|||+.|
T Consensus         9 p~~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_           9 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             TTCCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             CCCCEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            33456899999999999999999999999999764     47899998642        367899999999975

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.8e-18  Score=94.01  Aligned_cols=54  Identities=26%  Similarity=0.521  Sum_probs=47.9

Q ss_pred             EEEeeeCCCCCCCceecCCCCEEEEEEeCC-CCeEEEEEcCCCcEEEecCCCeEE
Q psy9679          68 FRCIVPYPPNSEYELELRVGDLIYVHKKRD-DGWYKGTLQRTGRTGLFPASFVES  121 (122)
Q Consensus        68 ~~al~dy~~~~~~eL~~~~gd~i~v~~~~~-~gW~~g~~~~~g~~G~~P~~yv~~  121 (122)
                      ++|||||.++.++||+|++||+|.|++..+ ++||.++..++|++||||++||+.
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            689999999999999999999999998764 567777777789999999999973

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.6e-18  Score=102.81  Aligned_cols=58  Identities=34%  Similarity=0.599  Sum_probs=49.1

Q ss_pred             cccEEEEeeeCCCCC------CCceecCCCCEEEEEEeC-CCCeEEEEEcCCCcEEEecCCCeEEC
Q psy9679          64 VRERFRCIVPYPPNS------EYELELRVGDLIYVHKKR-DDGWYKGTLQRTGRTGLFPASFVESF  122 (122)
Q Consensus        64 ~~~~~~al~dy~~~~------~~eL~~~~gd~i~v~~~~-~~gW~~g~~~~~g~~G~~P~~yv~~~  122 (122)
                      ....|+|+|||+++.      ++||+|++||+|.|+++. .++||.++.. +|++||||++||+++
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~-~G~~G~~P~nyve~~   80 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DGQRGLVPSNFVDFV   80 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET-TCCBCBCCTTSEECC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeC-CCCEEEEehHHeEEC
Confidence            466899999998754      489999999999999765 4668888765 789999999999875

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.8e-18  Score=103.68  Aligned_cols=55  Identities=22%  Similarity=0.424  Sum_probs=48.1

Q ss_pred             cEEEEeeeCCCCC-----CCceecCCCCEEEEEEeCCCCeEEEEEc----CCCcEEEecCCCeE
Q psy9679          66 ERFRCIVPYPPNS-----EYELELRVGDLIYVHKKRDDGWYKGTLQ----RTGRTGLFPASFVE  120 (122)
Q Consensus        66 ~~~~al~dy~~~~-----~~eL~~~~gd~i~v~~~~~~gW~~g~~~----~~g~~G~~P~~yv~  120 (122)
                      .+++|+|||+++.     ..||+|++||+|.|+++.+.+||+|+..    ..|++||||+|||+
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~   65 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV   65 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEecccee
Confidence            3689999999975     3489999999999999999999999863    35789999999985

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.8e-17  Score=98.51  Aligned_cols=57  Identities=26%  Similarity=0.433  Sum_probs=49.4

Q ss_pred             ccEEEEeeeCCCCCCCceecCCCCEEEEEEe---CCCCeEEEEEcC------CCcEEEecCCCeEE
Q psy9679          65 RERFRCIVPYPPNSEYELELRVGDLIYVHKK---RDDGWYKGTLQR------TGRTGLFPASFVES  121 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~eL~~~~gd~i~v~~~---~~~gW~~g~~~~------~g~~G~~P~~yv~~  121 (122)
                      ..+++|+|||.+++++||+|++||+|.|+.+   .+.+||.|+...      .++.||||++||++
T Consensus        21 ~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~   86 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRE   86 (106)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEE
T ss_pred             eeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEE
Confidence            3479999999999999999999999999986   357899998742      35689999999986

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.65  E-value=6.1e-17  Score=96.32  Aligned_cols=55  Identities=22%  Similarity=0.448  Sum_probs=49.0

Q ss_pred             ccEEEEeeeCCCCCCCc-------eecCCCCEEEEEEeCCCCeEEEEEcC-CCcEEEecCCCe
Q psy9679          65 RERFRCIVPYPPNSEYE-------LELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASFV  119 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~e-------L~~~~gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~yv  119 (122)
                      ..+++|+|||++..+++       |+|++||+|.|+++.+++||.|++.+ .|+.||||++|+
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            56899999999998888       99999999999999999999999953 468899999763

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.4e-15  Score=95.33  Aligned_cols=55  Identities=16%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             ccEEEEeeeCCCCCCCc-------eecCCCCEEEEEEeCCCCeEEEEEc-CCCcEEEecCCCe
Q psy9679          65 RERFRCIVPYPPNSEYE-------LELRVGDLIYVHKKRDDGWYKGTLQ-RTGRTGLFPASFV  119 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~e-------L~~~~gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv  119 (122)
                      ...++|+|||.+...++       |+|++||+|.|+++.+++||.|++. ..|+.||||++|+
T Consensus        23 ~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          23 AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             CEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            34799999999998887       9999999999999999999999984 3588999998653

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2.1e-13  Score=85.77  Aligned_cols=54  Identities=20%  Similarity=0.405  Sum_probs=47.2

Q ss_pred             ccEEEEeeeCCCCCCCc-------eecCCCCEEEEEEeCCCCeEEEEEcC-CCcEEEecCCC
Q psy9679          65 RERFRCIVPYPPNSEYE-------LELRVGDLIYVHKKRDDGWYKGTLQR-TGRTGLFPASF  118 (122)
Q Consensus        65 ~~~~~al~dy~~~~~~e-------L~~~~gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~y  118 (122)
                      ...++|+|||++..+++       |+|++||+|.|+++.+++||.|+..+ .+..|+||+.|
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~   84 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQ   84 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchH
Confidence            45799999999987766       99999999999999999999999853 46789999876

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3.9e-05  Score=42.44  Aligned_cols=41  Identities=20%  Similarity=0.309  Sum_probs=36.9

Q ss_pred             CCCceecCCCCEEEEEEeCCCCeEEEEEcCCCcEEEecCCCe
Q psy9679          78 SEYELELRVGDLIYVHKKRDDGWYKGTLQRTGRTGLFPASFV  119 (122)
Q Consensus        78 ~~~eL~~~~gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv  119 (122)
                      ...+|.++.||.|.|+...+.+-|.+++. .|+-|+|+..++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~-~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNE-EGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEET-TTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcC-CCcEEEEEeeee
Confidence            34689999999999999999999999998 999999987765