Psyllid ID: psy9688

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MYFKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccEEEccccccccccccccccccccEEEEcccccEEEEccccccccccccccccccccccccccccEEEcccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccccEccccccccccccccccccEEEccccccEEEEccccccccccccccccccccccccccccEEEcccccEEEEEEccccc
Coil and Loop (DISEMBL)
myfkpislstlcesdinecetvkdvcnygicvntngngnskvdhcltdpclghgtcinrsdryqclctprysgnncekdngdcssnpclndgvcvdevykgrywelpeirdctsnpclndcvcvddgnlsfycnctedftgeycqfensaacvtlnpcqnnatcvaspgekqiTCLCLKEV
Flexible Loop (DISEMBL)
MYFKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPeirdctsnpcLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNAtcvaspgekqitclclkev
Low Complexity Region (SEG)
MYFKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV
Disordered region (IsUnstruct)
*****ISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCL***
Disordered Region (DISOPRED)
MYFKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV
Disordered Region (DISEMBL)
MYFKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV
Disordered Region (DISPRO)
MYFKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYFKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
P10040	2146	Protein crumbs OS=Drosoph	yes	N/A	0.828	0.069	0.359	5e-18
A2AVA0	3567	Sushi, von Willebrand fac	yes	N/A	0.823	0.041	0.361	8e-17
Q04721	2471	Neurogenic locus notch ho	yes	N/A	0.734	0.053	0.398	2e-16
Q9QW30	2471	Neurogenic locus notch ho	yes	N/A	0.734	0.053	0.391	2e-16
P10079	1064	Fibropellin-1 OS=Strongyl	no	N/A	0.839	0.142	0.355	2e-16
P07207	2703	Neurogenic locus Notch pr	no	N/A	0.740	0.049	0.369	3e-16
P0C6B8	3564	Sushi, von Willebrand fac	no	N/A	0.823	0.041	0.361	3e-16
O35516	2470	Neurogenic locus notch ho	no	N/A	0.734	0.053	0.385	4e-16
Q4LDE5	3571	Sushi, von Willebrand fac	no	N/A	0.867	0.043	0.347	1e-15
Q80YA8	1282	Protein crumbs homolog 2	no	N/A	0.679	0.095	0.369	1e-15

>sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN=crb PE=1 SV=3

 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 28/178 (15%)

Query: 12  CESDINECETVKDVCNYGICVNTNGNG-------------NSKVDHCLTDPCLGHGTCIN 58
           C +D++EC     +C  GIC N  G+              +S VD CL+ PCL   TC N
Sbjct: 643 CGNDVDECTLHPKICGNGICKNEKGSYKCYCTPGFTGVHCDSDVDECLSFPCLNGATCHN 702

Query: 59  RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELPE 108
           + + Y+C+C P Y G NCE D  +C SNPC N   C+D +            GR  ++ +
Sbjct: 703 KINAYECVCQPGYEGENCEVDIDECGSNPCSNGSTCIDRINNFTCNCIPGMTGRICDI-D 761

Query: 109 IRDCTSNPCLNDCVCVDDGNLSFYCNCT-EDFTGEYCQFENSAACVTLNPCQNNATCV 165
           I DC  +PCLN   C+D     F C+C+   + GE C+  N   C++ NPC N A C+
Sbjct: 762 IDDCVGDPCLNGGQCIDQLG-GFRCDCSGTGYEGENCEL-NIDECLS-NPCTNGAKCL 816

Plays a central role in cell polarity establishment. Participates in the assembly, positioning and maintenance of adherens junctions via its interaction with the SAC complex. Controls the coalescence of the spots of zonula adherens (ZA) into a adhesive ring around the cells. It may act as a signal. Involved in morphogenesis of the photoreceptor rhabdomere, for positioning and growth of rhabdomere and AJ during the crucial period of photoreceptor extension along the proximodistal axis of the retina.
Drosophila melanogaster (taxid: 7227)

>sp|A2AVA0|SVEP1_MOUSE Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Mus musculus GN=Svep1 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 87/177 (49%), Gaps = 28/177 (15%)

Query: 12   CESDINECETVKDVCNYGICVNTNGNGN-------------SKVDHCLTDPCLGHGTCIN 58
            CE+DI+EC ++    N GIC +  G                  ++ C++ PCL  GTC +
Sbjct: 1227 CETDIDECSSLP-CLNGGICRDQVGGFTCECSLGYSGQICEENINECISSPCLNKGTCTD 1285

Query: 59   RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELPE 108
                Y+C C   Y G +CE D  +C S+PCLN+ VC D+V          + G   E   
Sbjct: 1286 GLASYRCTCVKGYMGVHCETDVNECQSSPCLNNAVCKDQVGGFSCKCPPGFLGTRCEK-N 1344

Query: 109  IRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
            + +C S PC N   C D  N SF C C   FTG +C+  N   C + NPC+N ATCV
Sbjct: 1345 VDECLSQPCQNGATCKDGAN-SFRCQCPAGFTGTHCEL-NINECQS-NPCRNQATCV 1398

May play a role in the cell attachment process.

Mus musculus (taxid: 10090)

>sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 80/148 (54%), Gaps = 15/148 (10%)

Query: 40  SKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV- 98
           S+V+ CL++PC+ HG C      Y+CLC   + G NCE D  +C SNPC N G C + V 
Sbjct: 719 SQVNECLSNPCI-HGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVN 777

Query: 99  ---------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENS 149
                    +KG   ++  I +C SNPCLN   C DD +  + C+C   +TG+ CQ    
Sbjct: 778 GYRCTCKKGFKGYNCQV-NIDECASNPCLNQGTCFDDIS-GYTCHCVLPYTGKNCQ--TV 833

Query: 150 AACVTLNPCQNNATCVASPGEKQITCLC 177
            A  + NPC+N A C  SP  +  TCLC
Sbjct: 834 LAPCSPNPCENAAVCKESPNFESYTCLC 861

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). Involved in bone remodeling and homeostasis. In collaboration with RELA/p65 enhances NFATc1 promoter activity and positively regulates RANKL-induced osteoclast differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=Rattus norvegicus GN=Notch2 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 15/148 (10%)

Query: 40  SKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV- 98
           S+V+ CL+ PC+ HG C      Y+CLC   + G NCE D  +C SNPC N G C + V 
Sbjct: 719 SQVNECLSSPCI-HGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCNNLVN 777

Query: 99  ---------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENS 149
                    +KG   ++  I +C SNPCLN   C+DD +  + C+C   +TG+ CQ    
Sbjct: 778 GYRCTCKKGFKGYNCQV-NIDECASNPCLNQGTCLDDVS-GYTCHCMLPYTGKNCQ--TV 833

Query: 150 AACVTLNPCQNNATCVASPGEKQITCLC 177
            A  + NPC+N A C  +P  +  TCLC
Sbjct: 834 LAPCSPNPCENAAVCKEAPNFESFTCLC 861

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P10079|FBP1_STRPU Fibropellin-1 OS=Strongylocentrotus purpuratus GN=EGF1 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 90/180 (50%), Gaps = 28/180 (15%)

Query: 9   STLCESDINECETVKDVCNYGICVN-------------TNGNGNSKVDHCLTDPCLGHGT 55
           +  C+ +I+EC +     N G+CV+             T  N  +++D C + PCL  G 
Sbjct: 702 AVRCQINIDECASAP-CQNGGVCVDGVNGYVCNCAPGYTGDNCETEIDECASMPCLNGGA 760

Query: 56  CINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWE 105
           CI   + Y C C   Y+G  CE D  +C+S PC N GVC D +          + G   E
Sbjct: 761 CIEMVNGYTCQCVAGYTGVICETDIDECASAPCQNGGVCTDTINGYICACVPGFTGSNCE 820

Query: 106 LPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
              I +C S+PCLN  +CVD  N  F C C  +++G YC+     AC ++ PCQN ATCV
Sbjct: 821 T-NIDECASDPCLNGGICVDGVN-GFVCQCPPNYSGTYCEISLD-ACRSM-PCQNGATCV 876

Forms the apical lamina, a component of the extracellular matrix.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophila melanogaster GN=N PE=1 SV=3

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 42  VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV--- 98
           +D C ++PC   GTC ++ + + C C P Y+G  CE +  DC +NPC N G C+D+V   
Sbjct: 792 IDECSSNPCQHGGTCYDKLNAFSCQCMPGYTGQKCETNIDDCVTNPCGNGGTCIDKVNGY 851

Query: 99  -------YKGRYWELPEIRDCTSNPCLNDCVCVDDGN-LSFYCNCTEDFTGEYCQFENSA 150
                  + GR  E  ++  C SN C N+  C    N L F C C   +TG YC  E+  
Sbjct: 852 KCVCKVPFTGRDCE-SKMDPCASNRCKNEAKCTPSSNFLDFSCTCKLGYTGRYCD-EDID 909

Query: 151 ACVTLNPCQNNATCVASPGEKQITCLCLK 179
            C   +PC+N A+C+  PG  +  CLC K
Sbjct: 910 ECSLSSPCRNGASCLNVPGSYR--CLCTK 936

Signaling protein, which regulates, with both positive and negative signals, the differentiation of at least central and peripheral nervous system and eye, wing disk, oogenesis, segmental appendages such as antennae and legs, and muscles, through lateral inhibition or induction. Functions as a receptor for membrane-bound ligands Delta and Serrate to regulate cell-fate determination. Upon ligand activation, and releasing from the cell membrane, the Notch intracellular domain (NICD) forms a transcriptional activator complex with Su(H) (Suppressor of hairless) and activates genes of the E(spl) complex. Essential for proper differentiation of ectoderm. Fringe (fng) acts in the Golgi to determine the type of O-linked fucose on the EGF modules in N, altering the ability of N to bind with Delta (Dl). O-fut1 also has a role in modulating the interaction. Rumi acts in the endoplasmic reticulum to glucosylate the EGF modules in N, this is required for correct folding and cleavage of N.

Drosophila melanogaster (taxid: 7227)

>sp|P0C6B8|SVEP1_RAT Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus GN=Svep1 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 86/177 (48%), Gaps = 28/177 (15%)

Query: 12   CESDINECETVKDVCNYGICVNTNGNGN-------------SKVDHCLTDPCLGHGTCIN 58
            CE+DI+EC ++    N GIC +  G                  ++ C + PCL  GTC +
Sbjct: 1223 CETDIDECSSLP-CLNGGICRDKVGGFTCECSSGYTGQICEENINECSSSPCLNKGTCTD 1281

Query: 59   RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELPE 108
                Y+C C   Y G +CE D  +C S+PCLN+ VC D+V          + G   E   
Sbjct: 1282 GLASYRCTCVSGYVGVHCETDVNECQSSPCLNNAVCKDQVGGFSCKCPPGFLGTRCEK-N 1340

Query: 109  IRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
            + +C S PC N   C D  N SF C C   FTG +C+  N   C + NPC+N ATCV
Sbjct: 1341 VDECLSQPCQNGATCKDGAN-SFRCQCPAGFTGPHCEL-NINECQS-NPCRNQATCV 1394

May play a role in the cell attachment process.

Rattus norvegicus (taxid: 10116)

>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus musculus GN=Notch2 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 80/148 (54%), Gaps = 15/148 (10%)

Query: 40  SKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV- 98
           S+V+ CL++PC+ HG C      Y+CLC   + G NCE D  +C SNPC N G C + V 
Sbjct: 717 SQVNECLSNPCI-HGNCTGGLSGYKCLCDAGWVGVNCEVDKNECLSNPCQNGGTCNNLVN 775

Query: 99  ---------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENS 149
                    +KG   ++  I +C SNPCLN   C DD +  + C+C   +TG+ CQ    
Sbjct: 776 GYRCTCKKGFKGYNCQV-NIDECASNPCLNQGTCFDDVS-GYTCHCMLPYTGKNCQ--TV 831

Query: 150 AACVTLNPCQNNATCVASPGEKQITCLC 177
            A  + NPC+N A C  +P  +  +CLC
Sbjct: 832 LAPCSPNPCENAAVCKEAPNFESFSCLC 859

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation. In collaboration with RELA/p65 enhances NFATc1 promoter activity and positively regulates RANKL-induced osteoclast differentiation.

Mus musculus (taxid: 10090)

>sp|Q4LDE5|SVEP1_HUMAN Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 27/184 (14%)

Query: 5    PISLSTL-CESDINECETV--------KDVCNYGICVNTNGNGNSK----VDHCLTDPCL 51
            P+  + L CE+DI+EC  +        KD+    IC   +G    +    ++ C + PCL
Sbjct: 1220 PLGYTGLKCETDIDECSPLPCLNNGVCKDLVGEFICECPSGYTGQRCEENINECSSSPCL 1279

Query: 52   GHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPE--- 108
              G C++    Y+C C   + G +CE +  +C SNPCLN+ VC D+V  G   + P    
Sbjct: 1280 NKGICVDGVAGYRCTCVKGFVGLHCETEVNECQSNPCLNNAVCEDQV-GGFLCKCPPGFL 1338

Query: 109  -------IRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNN 161
                   + +C S PC N   C D  N SF C C   FTG +C+  N   C + NPC+N 
Sbjct: 1339 GTRCGKNVDECLSQPCKNGATCKDGAN-SFRCLCAAGFTGSHCEL-NINECQS-NPCRNQ 1395

Query: 162  ATCV 165
            ATCV
Sbjct: 1396 ATCV 1399

May play a role in the cell attachment process.

Homo sapiens (taxid: 9606)

>sp|Q80YA8|CRUM2_MOUSE Protein crumbs homolog 2 OS=Mus musculus GN=Crb2 PE=2 SV=3

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 15/138 (10%)

Query: 39  NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV 98
            ++VD C + PCL  G+C++    Y+C+C P Y+G NC+ D  +C S PC + GVC D V
Sbjct: 148 EAEVDECSSAPCLHGGSCLDGVGSYRCVCAPGYAGANCQLDVDECQSQPCAHGGVCHDLV 207

Query: 99  -----------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFE 147
                      Y+G   E  E+ +C S PC ++  C+ DG  SF C C   F+GE C+ +
Sbjct: 208 NGFRCDCADTGYEGARCEQ-EVLECASAPCAHNASCL-DGFRSFRCLCWPGFSGERCEVD 265

Query: 148 NSAACVTLNPCQNNATCV 165
               C +  PCQN   C+
Sbjct: 266 ED-ECAS-GPCQNGGQCL 281

May play a role in polarized cells morphogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
328709399	2180	PREDICTED: protein crumbs-like isoform 4	0.889	0.073	0.412	3e-21
328709397	2180	PREDICTED: protein crumbs-like isoform 3	0.889	0.073	0.412	3e-21
328709395	2304	PREDICTED: protein crumbs-like isoform 2	0.889	0.069	0.412	4e-21
328709393	2304	PREDICTED: protein crumbs-like isoform 1	0.889	0.069	0.412	4e-21
357620129	1554	crumbs [Danaus plexippus]	0.679	0.079	0.395	9e-21
196007882	1480	hypothetical protein TRIADDRAFT_57599 [T	0.817	0.1	0.380	1e-17
157120683	1343	crumbs [Aedes aegypti] gi|108874850|gb|E	0.883	0.119	0.372	2e-17
443723935	2612	hypothetical protein CAPTEDRAFT_204698,	0.729	0.050	0.423	2e-17
260823778	478	hypothetical protein BRAFLDRAFT_103547 [	0.883	0.334	0.361	3e-17
194909783	2188	GG11278 [Drosophila erecta] gi|190656646	0.828	0.068	0.370	4e-17

>gi|328709399|ref|XP_003243948.1| PREDICTED: protein crumbs-like isoform 4 [Acyrthosiphon pisum]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 102/189 (53%), Gaps = 28/189 (14%)

Query: 12  CESDINECETVKDVCNYGICVNTNG-------------NGNSKVDHCLTDPCLGHGTCIN 58
           C+ DINECE  K+VCNYGICVNTNG             N +   D CL+ PC    TC N
Sbjct: 661 CDQDINECEVNKEVCNYGICVNTNGSYQCFCRPGFSGDNCDVDFDECLSQPCYHGATCEN 720

Query: 59  RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYK-------GRYWELPE--I 109
           + + + C+C P Y+G  C  D  +CSSNPCLN   C+D +         G   +L E  I
Sbjct: 721 KINGFNCICPPGYTGKVCSIDINECSSNPCLNGATCIDNIASFTCSCPPGIVGKLCETNI 780

Query: 110 RDCTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQFENSAACVTLNPCQNNATCVASP 168
            DC S+PC N  +C+D  N S+ CNCT   F G +C+  N   C+  + C+NN TC+   
Sbjct: 781 DDCESSPCQNMGLCIDGLN-SYECNCTNTGFEGNHCEL-NINDCIH-DQCENNGTCI--D 835

Query: 169 GEKQITCLC 177
           G K  +C C
Sbjct: 836 GIKDYSCKC 844

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709397|ref|XP_003243947.1| PREDICTED: protein crumbs-like isoform 3 [Acyrthosiphon pisum]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 102/189 (53%), Gaps = 28/189 (14%)

Query: 12  CESDINECETVKDVCNYGICVNTNG-------------NGNSKVDHCLTDPCLGHGTCIN 58
           C+ DINECE  K+VCNYGICVNTNG             N +   D CL+ PC    TC N
Sbjct: 661 CDQDINECEVNKEVCNYGICVNTNGSYQCFCRPGFSGDNCDVDFDECLSQPCYHGATCEN 720

Query: 59  RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYK-------GRYWELPE--I 109
           + + + C+C P Y+G  C  D  +CSSNPCLN   C+D +         G   +L E  I
Sbjct: 721 KINGFNCICPPGYTGKVCSIDINECSSNPCLNGATCIDNIASFTCSCPPGIVGKLCETNI 780

Query: 110 RDCTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQFENSAACVTLNPCQNNATCVASP 168
            DC S+PC N  +C+D  N S+ CNCT   F G +C+  N   C+  + C+NN TC+   
Sbjct: 781 DDCESSPCQNMGLCIDGLN-SYECNCTNTGFEGNHCEL-NINDCIH-DQCENNGTCI--D 835

Query: 169 GEKQITCLC 177
           G K  +C C
Sbjct: 836 GIKDYSCKC 844

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709395|ref|XP_003243946.1| PREDICTED: protein crumbs-like isoform 2 [Acyrthosiphon pisum]

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 102/189 (53%), Gaps = 28/189 (14%)

Query: 12  CESDINECETVKDVCNYGICVNTNG-------------NGNSKVDHCLTDPCLGHGTCIN 58
           C+ DINECE  K+VCNYGICVNTNG             N +   D CL+ PC    TC N
Sbjct: 785 CDQDINECEVNKEVCNYGICVNTNGSYQCFCRPGFSGDNCDVDFDECLSQPCYHGATCEN 844

Query: 59  RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYK-------GRYWELPE--I 109
           + + + C+C P Y+G  C  D  +CSSNPCLN   C+D +         G   +L E  I
Sbjct: 845 KINGFNCICPPGYTGKVCSIDINECSSNPCLNGATCIDNIASFTCSCPPGIVGKLCETNI 904

Query: 110 RDCTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQFENSAACVTLNPCQNNATCVASP 168
            DC S+PC N  +C+D  N S+ CNCT   F G +C+  N   C+  + C+NN TC+   
Sbjct: 905 DDCESSPCQNMGLCIDGLN-SYECNCTNTGFEGNHCEL-NINDCIH-DQCENNGTCI--D 959

Query: 169 GEKQITCLC 177
           G K  +C C
Sbjct: 960 GIKDYSCKC 968

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709393|ref|XP_001950069.2| PREDICTED: protein crumbs-like isoform 1 [Acyrthosiphon pisum]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 102/189 (53%), Gaps = 28/189 (14%)

Query: 12  CESDINECETVKDVCNYGICVNTNG-------------NGNSKVDHCLTDPCLGHGTCIN 58
           C+ DINECE  K+VCNYGICVNTNG             N +   D CL+ PC    TC N
Sbjct: 785 CDQDINECEVNKEVCNYGICVNTNGSYQCFCRPGFSGDNCDVDFDECLSQPCYHGATCEN 844

Query: 59  RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYK-------GRYWELPE--I 109
           + + + C+C P Y+G  C  D  +CSSNPCLN   C+D +         G   +L E  I
Sbjct: 845 KINGFNCICPPGYTGKVCSIDINECSSNPCLNGATCIDNIASFTCSCPPGIVGKLCETNI 904

Query: 110 RDCTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQFENSAACVTLNPCQNNATCVASP 168
            DC S+PC N  +C+D  N S+ CNCT   F G +C+  N   C+  + C+NN TC+   
Sbjct: 905 DDCESSPCQNMGLCIDGLN-SYECNCTNTGFEGNHCEL-NINDCIH-DQCENNGTCI--D 959

Query: 169 GEKQITCLC 177
           G K  +C C
Sbjct: 960 GIKDYSCKC 968

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620129|gb|EHJ72435.1| crumbs [Danaus plexippus]

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 16/139 (11%)

Query: 43   DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGD-CSSNPCLNDGVCVDE---- 97
            DHC  +PCL HGTCI+R D+Y+C CT RY+GNNCE D GD C+S+PC +   CV++    
Sbjct: 1313 DHCYNEPCLRHGTCISRHDKYECHCTARYTGNNCEVDKGDPCASSPCWHGARCVEDARGD 1372

Query: 98   -------VYKGRYWELPEIRD--CTSNPCLNDCVC-VDDGNLSFYCNCTEDFTGEYCQFE 147
                   +Y+G + EL E  D  C + PC N+  C V  G+  + C C   ++G  C+ +
Sbjct: 1373 YTCLCPPLYRGVHCELEESLDPQCAAQPCRNNGSCSVPPGSDEYVCECAPGYSGRNCETD 1432

Query: 148  -NSAACVTLNPCQNNATCV 165
             +  A    + C N   CV
Sbjct: 1433 VDDCAEAGQDACLNGGRCV 1451

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|196007882|ref|XP_002113807.1| hypothetical protein TRIADDRAFT_57599 [Trichoplax adhaerens] gi|190584211|gb|EDV24281.1| hypothetical protein TRIADDRAFT_57599 [Trichoplax adhaerens]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 28/176 (15%)

Query: 13  ESDINECETVKDVCNYGICVN---------TNGNGNSK----VDHCLTDPCLGHGTCINR 59
           + +INEC + +   N GIC+N         + G    +    ++ C + PC   GTC+N 
Sbjct: 821 QHNINECAS-QPCQNSGICINGINKYACNCSKGFAGDQCQLDINECSSQPCRNGGTCVNN 879

Query: 60  SDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDE----------VYKGRYWELPEI 109
            DRY C C+  Y G NCE +  +C SNPCLNDG C+D            + G   +L EI
Sbjct: 880 IDRYSCQCSGGYQGINCEFEIDECLSNPCLNDGTCIDSNNGYTCSCKAGFSGALCQL-EI 938

Query: 110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
            +C SNPCLND  C+D  N ++ C+C   F+G  CQ E +  C++  PCQN+ TC+
Sbjct: 939 DECLSNPCLNDGTCIDSNN-AYTCSCRAGFSGALCQSEIN-ECIS-EPCQNDGTCI 991

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|157120683|ref|XP_001659721.1| crumbs [Aedes aegypti] gi|108874850|gb|EAT39075.1| AAEL009102-PA, partial [Aedes aegypti]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 93/188 (49%), Gaps = 28/188 (14%)

Query: 12  CESDINECETVKDVCNYGICVNTNG-------------NGNSKVDHCLTDPCLGHGTCIN 58
           CE+DI+EC+T   +C  GIC NT G             N +  VD CL+ PC  +  C+N
Sbjct: 515 CENDIDECKTKDKICVNGICQNTPGSFRCFCTPGYTGLNCDLDVDECLSHPCKNNAQCVN 574

Query: 59  RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELPE 108
           + + ++C+C P YSG +C  D  +C SNPC     C D V            GR  E+ +
Sbjct: 575 KENDFECICPPGYSGKDCSIDIDECESNPCTKGSTCRDRVANFTCVCIPGMTGRLCEI-D 633

Query: 109 IRDCTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQFENSAACVTLNPCQNNATCVAS 167
           I DC S PC N   C+D     F C+C +  F+G YCQ  N   C + NPC N A CV  
Sbjct: 634 IDDCESAPCQNGGRCIDQLG-GFLCDCNQTGFSGSYCQ-HNINECDS-NPCSNGAQCVDK 690

Query: 168 PGEKQITC 175
             + Q  C
Sbjct: 691 INDYQCKC 698

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443723935|gb|ELU12153.1| hypothetical protein CAPTEDRAFT_204698, partial [Capitella teleta]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 80/144 (55%), Gaps = 12/144 (8%)

Query: 42   VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD----- 96
            ++ C +DPCL HGTC++  D Y CLC     G NCE +  +C SNPCLN+ +C+D     
Sbjct: 1908 INECASDPCLNHGTCVDDIDSYACLCQSGVRGANCESNTNECVSNPCLNNALCIDGYGQF 1967

Query: 97   --EVYKGRYWEL--PEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAAC 152
              +   G   EL    I +CTS+PCLND  C+D  N +F C C    TG+ CQF N   C
Sbjct: 1968 TCKCQAGWAGELCSENIDECTSSPCLNDGKCIDGVN-TFLCRCHTGVTGDRCQF-NYDEC 2025

Query: 153  VTLNPCQNNATCVASPGEKQITCL 176
             + NPC+N A C+   GE    C 
Sbjct: 2026 RS-NPCRNGAECIDGYGEYSCDCA 2048

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|260823778|ref|XP_002606845.1| hypothetical protein BRAFLDRAFT_103547 [Branchiostoma floridae] gi|229292190|gb|EEN62855.1| hypothetical protein BRAFLDRAFT_103547 [Branchiostoma floridae]

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 97/188 (51%), Gaps = 28/188 (14%)

Query: 12  CESDINEC--------ETVKDVCNYGICVNTNGNGNSK----VDHCLTDPCLGHGTCINR 59
           CE +I+EC         T  D  N   C  T G   S     +D CL+ PC   GTC+++
Sbjct: 83  CEVEIDECLSSPCLNNATCTDQLNMFTCACTPGFTGSTCGEDIDECLSSPCQYDGTCVDK 142

Query: 60  SDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELPEI 109
           ++ YQC+C+  Y+G NCE +  +C S PC+N G+C+D +          Y G   +L +I
Sbjct: 143 TNGYQCICSKGYTGTNCEIEVNECYSGPCMNGGICLDLIGQFSCSCSPGYHGDRCQL-DI 201

Query: 110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPG 169
            +C+S PC N+  CVD  N SF C C   FT + C+ +        +PCQN ATC+   G
Sbjct: 202 NECSSQPCFNNGTCVDAVN-SFSCQCPVGFTSDLCEIDIDEC--ESDPCQNGATCLDQVG 258

Query: 170 EKQITCLC 177
               TC+C
Sbjct: 259 --SYTCVC 264

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194909783|ref|XP_001982008.1| GG11278 [Drosophila erecta] gi|190656646|gb|EDV53878.1| GG11278 [Drosophila erecta]

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 28/178 (15%)

Query: 12  CESDINECETVKDVCNYGICVNTNGNG-------------NSKVDHCLTDPCLGHGTCIN 58
           C +D++EC     +C  GIC N  G+              +S VD CL+ PCL   TC N
Sbjct: 685 CGNDVDECTLHPKICGNGICKNEKGSYKCYCTPGFTGVHCDSDVDECLSFPCLNGATCHN 744

Query: 59  RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELPE 108
           + + Y+C+C P Y G NCE D  +C SNPC N   C+D +            GR  ++ +
Sbjct: 745 KINAYECVCQPGYEGENCEVDIDECGSNPCSNGSTCIDRINNFTCNCIPGMTGRICDI-D 803

Query: 109 IRDCTSNPCLNDCVCVDDGNLSFYCNCT-EDFTGEYCQFENSAACVTLNPCQNNATCV 165
           I DC  NPCLN   C+D     F C+C+   + GE C+  N   C++ NPC N A CV
Sbjct: 804 IDDCVGNPCLNGGQCIDQLG-GFRCDCSGTGYEGENCEL-NIDECLS-NPCTNGAKCV 858

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
FB|FBgn0259685	2146	crb "crumbs" [Drosophila melan	0.828	0.069	0.365	1.7e-26
UNIPROTKB|P21783	2524	notch1 "Neurogenic locus notch	0.878	0.062	0.342	1.6e-24
UNIPROTKB|E2QZC0	376	CRB1 "Uncharacterized protein"	0.883	0.425	0.380	2e-24
UNIPROTKB|I3LHN5	390	LOC100738148 "Uncharacterized	0.883	0.410	0.375	3.3e-24
UNIPROTKB|I3LVI7	504	NOTCH2 "Uncharacterized protei	0.729	0.261	0.402	4.5e-24
FB|FBgn0004647	2703	N "Notch" [Drosophila melanoga	0.889	0.059	0.345	5.8e-24
ZFIN|ZDB-GENE-990415-47	717	dld "deltaD" [Danio rerio (tax	0.889	0.224	0.347	9.7e-24
ZFIN|ZDB-GENE-990415-183	2465	notch1b "notch homolog 1b" [Da	0.878	0.064	0.310	1.1e-23
MGI|MGI:1928849	3567	Svep1 "sushi, von Willebrand f	0.823	0.041	0.372	1.7e-23
ZFIN|ZDB-GENE-000329-5	2468	notch3 "notch homolog 3" [Dani	0.878	0.064	0.347	1.8e-23

FB|FBgn0259685 crb "crumbs" [Drosophila melanogaster (taxid:7227)]

 Score = 304 (112.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 65/178 (36%), Positives = 91/178 (51%)

Query:    12 CESDINECETVKDVCNYGICVNTNGN-------G------NSKVDHCLTDPCLGHGTCIN 58
             C +D++EC     +C  GIC N  G+       G      +S VD CL+ PCL   TC N
Sbjct:   643 CGNDVDECTLHPKICGNGICKNEKGSYKCYCTPGFTGVHCDSDVDECLSFPCLNGATCHN 702

Query:    59 RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYK----------GRYWELPE 108
             + + Y+C+C P Y G NCE D  +C SNPC N   C+D +            GR  ++ +
Sbjct:   703 KINAYECVCQPGYEGENCEVDIDECGSNPCSNGSTCIDRINNFTCNCIPGMTGRICDI-D 761

Query:   109 IRDCTSNPCLNDCVCVDDGNLSFYCNCT-EDFTGEYCQFENSAACVTLNPCQNNATCV 165
             I DC  +PCLN   C+D     F C+C+   + GE C+  N   C++ NPC N A C+
Sbjct:   762 IDDCVGDPCLNGGQCIDQLG-GFRCDCSGTGYEGENCEL-NIDECLS-NPCTNGAKCL 816

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS;IMP

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0016324 "apical plasma membrane" evidence=NAS;IDA;TAS

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS;TAS

GO:0048477 "oogenesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=NAS;TAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0042052 "rhabdomere development" evidence=NAS;IMP

GO:0045186 "zonula adherens assembly" evidence=IMP;TAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=IMP

GO:0016327 "apicolateral plasma membrane" evidence=IDA;IPI

GO:0005913 "cell-cell adherens junction" evidence=NAS

GO:0007043 "cell-cell junction assembly" evidence=NAS

GO:0046664 "dorsal closure, amnioserosa morphology change" evidence=IMP

GO:0045218 "zonula adherens maintenance" evidence=NAS;IMP

GO:0042051 "compound eye photoreceptor development" evidence=IMP;TAS

GO:0045494 "photoreceptor cell maintenance" evidence=NAS;IMP

GO:0016044 "cellular membrane organization" evidence=IMP;TAS

GO:0007435 "salivary gland morphogenesis" evidence=IMP

GO:0035239 "tube morphogenesis" evidence=IMP

GO:0030507 "spectrin binding" evidence=TAS

GO:0035003 "subapical complex" evidence=TAS

GO:0005918 "septate junction" evidence=TAS

GO:0007431 "salivary gland development" evidence=TAS

GO:0008104 "protein localization" evidence=TAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0034332 "adherens junction organization" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IMP

GO:0061336 "cell morphogenesis involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP

GO:0016028 "rhabdomere" evidence=IDA

GO:0001745 "compound eye morphogenesis" evidence=IGI;IMP

GO:0042327 "positive regulation of phosphorylation" evidence=IMP

GO:0035330 "regulation of hippo signaling cascade" evidence=IGI

GO:0046621 "negative regulation of organ growth" evidence=IMP

GO:0035002 "liquid clearance, open tracheal system" evidence=IGI

UNIPROTKB|P21783 notch1 "Neurogenic locus notch protein homolog" [Xenopus laevis (taxid:8355)]

 Score = 297 (109.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 65/190 (34%), Positives = 101/190 (53%)

Query:    12 CESDINECETVKDVCNYG-ICVNTNGN-------GNS------KVDHCLTDPCLGHGTCI 57
             C +D++EC    + C +G  C NT G+       G +       V+ CL++PC    TC+
Sbjct:   408 CNNDVDECSLGANPCEHGGRCTNTLGSFQCNCPQGYAGPRCEIDVNECLSNPCQNDSTCL 467

Query:    58 NRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELP---------- 107
             ++   +QC+C P Y G  CE +  +C+SNPCL++G C+D++ + R  + P          
Sbjct:   468 DQIGEFQCICMPGYEGLYCETNIDECASNPCLHNGKCIDKINEFRC-DCPTGFSGNLCQH 526

Query:   108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVAS 167
             +  +CTS PC N   C+D  N S+ C CTE FTG +C+ ++   C+  +PC +  TC   
Sbjct:   527 DFDECTSTPCKNGAKCLDGPN-SYTCQCTEGFTGRHCE-QDINECIP-DPC-HYGTC--K 580

Query:   168 PGEKQITCLC 177
              G    TCLC
Sbjct:   581 DGIATFTCLC 590

GO:0005654 "nucleoplasm" evidence=TAS

UNIPROTKB|E2QZC0 CRB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 72/189 (38%), Positives = 92/189 (48%)

Query:    12 CESDINECETVK----DVCNYGI----CVNTNG-NG---NSKVDHCLTDPCLGHGTCINR 59
             CE+D++EC +       +C  GI    C    G  G   + +VD C++DPC    TC+N 
Sbjct:   125 CENDLDECASSPCHNGAMCQDGINGYSCFCVPGYQGRLCDLEVDECVSDPCKNEATCLNE 184

Query:    60 SDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD--EVY--------KGRYWELPEI 109
               RY C+C   YSG NCE +  +C S PC N   C D  E Y         G   EL   
Sbjct:   185 IGRYTCICPRDYSGVNCEVEVDECQSQPCRNGATCRDALEAYFCDCSPGFLGYDCEL-NA 243

Query:   110 RDCTSNPCLNDCVCVDDGNLSFYCNCT-EDFTGEYCQFENSAACVTLNPCQNNATCVASP 168
              +C S PCL+  +CVD  N S+ CNCT   FTG +C+      C +  PC NNATC  S 
Sbjct:   244 DECASQPCLHGGLCVDGYN-SYSCNCTGSGFTGTHCE-TLMPLCWS-EPCHNNATCEDSA 300

Query:   169 GEKQITCLC 177
                  TC C
Sbjct:   301 DN--YTCHC 307

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|I3LHN5 LOC100738148 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 71/189 (37%), Positives = 89/189 (47%)

Query:    12 CESDINECETVK----DVCNYGI----CVNTNG-NGNS---KVDHCLTDPCLGHGTCINR 59
             CE D +EC +       +C  GI    C    G  G     +VD C++DPC    TC+N 
Sbjct:   122 CELDHDECGSSPCRNGAMCQDGINGYSCFCVPGYQGRHCDLEVDECVSDPCKNEATCLNE 181

Query:    60 SDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELPEI 109
               RY CLC   YSG NCE +  +C S PCLN   C D            + G   EL + 
Sbjct:   182 IGRYTCLCPHNYSGVNCELEVEECWSQPCLNGATCRDAAGSYACDCAPGFLGDRCEL-DT 240

Query:   110 RDCTSNPCLNDCVCVDDGNLSFYCNCT-EDFTGEYCQFENSAACVTLNPCQNNATCVASP 168
              +C S PCL+  +C+D  N S+ CNCT   FTG  C+      C +  PC NNATC    
Sbjct:   241 DECASGPCLHGGLCMDGAN-SYSCNCTGSGFTGTRCE-TLMLPCWS-KPCHNNATC--ED 295

Query:   169 GEKQITCLC 177
             G    TC C
Sbjct:   296 GTDNYTCHC 304

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|I3LVI7 NOTCH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 281 (104.0 bits), Expect = 4.5e-24, P = 4.5e-24
 Identities = 60/149 (40%), Positives = 82/149 (55%)

Query:    40 SKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV- 98
             S+V+ CL++PC+ HG C      Y+CLC   + G NCE D  +C S+PC N G C + V 
Sbjct:   299 SQVNECLSNPCI-HGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSDPCQNGGTCDNLVN 357

Query:    99 ---------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFY-CNCTEDFTGEYCQFEN 148
                      +KG   ++  I +C SNPCLN   C DD  +S Y C+C   +TG+ CQ   
Sbjct:   358 GYRCTCKKGFKGHNCQV-NIDECASNPCLNQGTCFDD--ISGYTCHCVLPYTGKNCQTV- 413

Query:   149 SAACVTLNPCQNNATCVASPGEKQITCLC 177
              A C + NPC+N A C  +P  +  TCLC
Sbjct:   414 LAPC-SPNPCENAAVCKEAPNFESYTCLC 441

GO:0005509 "calcium ion binding" evidence=IEA

FB|FBgn0004647 N "Notch" [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 5.8e-24, P = 5.8e-24
 Identities = 66/191 (34%), Positives = 102/191 (53%)

Query:    11 LCESDINECETVKDVCNY-GIC------------VNTNG-NGNSKVDHCLTDPCLGHGTC 56
             +C+  INECE+  + C + G C              T+G N    V+ C ++PC    TC
Sbjct:   635 ICQKQINECES--NPCQFDGHCQDRVGSYYCQCQAGTSGKNCEVNVNECHSNPCNNGATC 692

Query:    57 INRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV--YK-----GRYWE--LP 107
             I+  + Y+C C P ++G +CEK+  +C S+PC N+GVC+D+V  YK     G Y    L 
Sbjct:   693 IDGINSYKCQCVPGFTGQHCEKNVDECISSPCANNGVCIDQVNGYKCECPRGFYDAHCLS 752

Query:   108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVAS 167
             ++ +C SNPC+N+  C +DG   F C+C   +TG+ C+ +    C + NPCQ+  TC   
Sbjct:   753 DVDECASNPCVNEGRC-EDGINEFICHCPPGYTGKRCELDIDE-CSS-NPCQHGGTCYDK 809

Query:   168 PGEKQITCLCL 178
                   +C C+
Sbjct:   810 LNA--FSCQCM 818

GO:0007498 "mesoderm development" evidence=IMP

GO:0007398 "ectoderm development" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005622 "intracellular" evidence=NAS;IDA

GO:0016360 "sensory organ precursor cell fate determination" evidence=IMP

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP;TAS

GO:0030707 "ovarian follicle cell development" evidence=IMP;TAS

GO:0001708 "cell fate specification" evidence=NAS;TAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0009952 "anterior/posterior pattern specification" evidence=TAS

GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP

GO:0007478 "leg disc morphogenesis" evidence=TAS

GO:0061382 "Malpighian tubule tip cell differentiation" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004872 "receptor activity" evidence=NAS;TAS

GO:0045165 "cell fate commitment" evidence=NAS

GO:0007424 "open tracheal system development" evidence=TAS

GO:0035155 "negative regulation of terminal cell fate specification, open tracheal system" evidence=TAS

GO:0035157 "negative regulation of fusion cell fate specification" evidence=TAS

GO:0007446 "imaginal disc growth" evidence=TAS

GO:0007447 "imaginal disc pattern formation" evidence=TAS

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS;TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;TAS

GO:0045463 "R8 cell development" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0007460 "R8 cell fate commitment" evidence=TAS

GO:0007422 "peripheral nervous system development" evidence=IMP;TAS

GO:0007403 "glial cell fate determination" evidence=IMP

GO:0007293 "germarium-derived egg chamber formation" evidence=IMP;TAS

GO:0016333 "morphogenesis of follicular epithelium" evidence=NAS

GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=TAS

GO:0007314 "oocyte anterior/posterior axis specification" evidence=TAS

GO:0007451 "dorsal/ventral lineage restriction, imaginal disc" evidence=TAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=NAS;TAS

GO:0048749 "compound eye development" evidence=NAS;TAS

GO:0007423 "sensory organ development" evidence=IMP

GO:0016330 "second mitotic wave involved in compound eye morphogenesis" evidence=NAS

GO:0046667 "compound eye retinal cell programmed cell death" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045465 "R8 cell differentiation" evidence=NAS

GO:0045468 "regulation of R8 cell spacing in compound eye" evidence=NAS

GO:0061331 "epithelial cell proliferation involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP;NAS

GO:0007450 "dorsal/ventral pattern formation, imaginal disc" evidence=TAS

GO:0005634 "nucleus" evidence=IDA;NAS;TAS

GO:0046331 "lateral inhibition" evidence=IMP;NAS;TAS

GO:0046329 "negative regulation of JNK cascade" evidence=NAS

GO:0007391 "dorsal closure" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=NAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035171 "lamellocyte differentiation" evidence=IMP

GO:0042688 "crystal cell differentiation" evidence=IMP

GO:0042676 "compound eye cone cell fate commitment" evidence=TAS

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0035172 "hemocyte proliferation" evidence=IMP

GO:0035167 "larval lymph gland hemopoiesis" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007464 "R3/R4 cell fate commitment" evidence=NAS

GO:0046666 "retinal cell programmed cell death" evidence=TAS

GO:0007473 "wing disc proximal/distal pattern formation" evidence=TAS

GO:0042689 "regulation of crystal cell differentiation" evidence=TAS

GO:0008356 "asymmetric cell division" evidence=TAS

GO:0007419 "ventral cord development" evidence=NAS

GO:0007411 "axon guidance" evidence=IMP

GO:0007521 "muscle cell fate determination" evidence=IMP

GO:0042686 "regulation of cardioblast cell fate specification" evidence=IMP

GO:0045466 "R7 cell differentiation" evidence=IMP;TAS

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=TAS

GO:0035170 "lymph gland crystal cell differentiation" evidence=TAS

GO:0048477 "oogenesis" evidence=IMP

GO:0030720 "oocyte localization involved in germarium-derived egg chamber formation" evidence=IMP

GO:0035165 "embryonic crystal cell differentiation" evidence=TAS

GO:0040008 "regulation of growth" evidence=IGI;IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007440 "foregut morphogenesis" evidence=IMP

GO:0007616 "long-term memory" evidence=IGI;IMP;TAS

GO:0007615 "anesthesia-resistant memory" evidence=IMP

GO:0048542 "lymph gland development" evidence=IMP

GO:0007157 "heterophilic cell-cell adhesion" evidence=IDA;IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0045316 "negative regulation of compound eye photoreceptor development" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0007297 "ovarian follicle cell migration" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0035003 "subapical complex" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0035153 "epithelial cell type specification, open tracheal system" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0050767 "regulation of neurogenesis" evidence=IMP

GO:0048863 "stem cell differentiation" evidence=IMP

GO:0050768 "negative regulation of neurogenesis" evidence=IMP

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0048052 "R1/R6 cell differentiation" evidence=IMP

GO:0035214 "eye-antennal disc development" evidence=IMP

GO:0007400 "neuroblast fate determination" evidence=IDA

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0051489 "regulation of filopodium assembly" evidence=IMP

GO:0016348 "imaginal disc-derived leg joint morphogenesis" evidence=IMP

GO:0048803 "imaginal disc-derived male genitalia morphogenesis" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

GO:0060288 "formation of a compartment boundary" evidence=IMP

ZFIN|ZDB-GENE-990415-47 dld "deltaD" [Danio rerio (taxid:7955)]

 Score = 282 (104.3 bits), Expect = 9.7e-24, P = 9.7e-24
 Identities = 66/190 (34%), Positives = 86/190 (45%)

Query:    12 CESDINECETVKDVCNYGICVNTN-GN----------GNS---KVDHCLTDPCLGHGTCI 57
             C  D+N C   K   N   C NT  G+          G+S   +V+ C   PC   G+C 
Sbjct:   283 CNQDLNYCTHHKPCQNGATCTNTGQGSYTCSCRPGFTGDSCEIEVNECSGSPCRNGGSCT 342

Query:    58 NRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELP---------- 107
             +  + Y C C P + G NCE     C+  PC N G C D    G + + P          
Sbjct:   343 DLENTYSCTCPPGFYGRNCELSAMTCADGPCFNGGHCADNPEGGYFCQCPMGYAGFNCEK 402

Query:   108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVAS 167
             +I  C+SNPC ND  C+D  + S+ C C E FTG +C+ +N   C T  PCQN  TC   
Sbjct:   403 KIDHCSSNPCSNDAQCLDLVD-SYLCQCPEGFTGTHCE-DNIDECATY-PCQNGGTC--Q 457

Query:   168 PGEKQITCLC 177
              G    TC C
Sbjct:   458 DGLSDYTCTC 467

GO:0007154 "cell communication" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0001756 "somitogenesis" evidence=IGI;IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0021523 "somatic motor neuron differentiation" evidence=IMP

GO:0030165 "PDZ domain binding" evidence=IMP;IDA;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0060218 "hematopoietic stem cell differentiation" evidence=IGI;IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0007368 "determination of left/right symmetry" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046331 "lateral inhibition" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0003140 "determination of left/right asymmetry in lateral mesoderm" evidence=IGI

ZFIN|ZDB-GENE-990415-183 notch1b "notch homolog 1b" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 59/190 (31%), Positives = 98/190 (51%)

Query:    12 CESDINECETVKDVCNY-GICVNTNGNGNSK-------------VDHCLTDPCLGHGTCI 57
             C+ D++EC    + C + G C+NT G+   K             ++ CL+ PC    TC+
Sbjct:   429 CDQDVDECSLGANPCEHAGKCINTKGSFQCKCLQGYVGARCELDINECLSTPCQNDATCL 488

Query:    58 NRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELP 107
             ++   + C+C P Y G  C+ +  +C+S PCLN+G C+D++          + G   +  
Sbjct:   489 DQIGGFHCICMPGYEGVFCQINTDECASMPCLNNGKCIDKINNYQCECPTGFSGSQCQF- 547

Query:   108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVAS 167
             +I +C S PC N   C+D  N+ + C CTE +TG++C+ +    C++ NPC +  TC   
Sbjct:   548 DIDECASTPCKNGAKCMDGPNM-YTCQCTEGYTGQHCETDVDE-CLS-NPC-HYGTC--K 601

Query:   168 PGEKQITCLC 177
              G    TC+C
Sbjct:   602 DGLASFTCVC 611

GO:0030154 "cell differentiation" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0001568 "blood vessel development" evidence=IMP

GO:0001946 "lymphangiogenesis" evidence=IMP

GO:0048936 "peripheral nervous system neuron axonogenesis" evidence=IGI

GO:0021654 "rhombomere boundary formation" evidence=IGI

MGI|MGI:1928849 Svep1 "sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1" [Mus musculus (taxid:10090)]

 Score = 289 (106.8 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 66/177 (37%), Positives = 90/177 (50%)

Query:    12 CESDINECETVKDVCNYGICVNTNGN-------GNS------KVDHCLTDPCLGHGTCIN 58
             CE+DI+EC ++  + N GIC +  G        G S       ++ C++ PCL  GTC +
Sbjct:  1227 CETDIDECSSLPCL-NGGICRDQVGGFTCECSLGYSGQICEENINECISSPCLNKGTCTD 1285

Query:    59 RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELPE 108
                 Y+C C   Y G +CE D  +C S+PCLN+ VC D+V          + G   E   
Sbjct:  1286 GLASYRCTCVKGYMGVHCETDVNECQSSPCLNNAVCKDQVGGFSCKCPPGFLGTRCE-KN 1344

Query:   109 IRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
             + +C S PC N   C D  N SF C C   FTG +C+  N   C + NPC+N ATCV
Sbjct:  1345 VDECLSQPCQNGATCKDGAN-SFRCQCPAGFTGTHCEL-NINECQS-NPCRNQATCV 1398

GO:0003682 "chromatin binding" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-000329-5 notch3 "notch homolog 3" [Danio rerio (taxid:7955)]

 Score = 287 (106.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 66/190 (34%), Positives = 93/190 (48%)

Query:    12 CESDINECETVKDVC-NYGICVNTNGN-----GNS------KVD--HCLTDPCLGHGTCI 57
             C  D++EC    + C ++G CVNT G+     G        ++D   CL+ PC    TC+
Sbjct:   364 CNQDMDECSIGANPCEHFGKCVNTEGSFQCQCGRGYTGPRCEIDINECLSMPCQNDATCL 423

Query:    58 NRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELP 107
             +R   + C+C P Y G  CE D  +C SNPC+NDG+C D V          + G   ++ 
Sbjct:   424 DRIGEFTCICMPGYQGKYCEVDIDECESNPCVNDGICRDMVNGFTCTCQPGFTGTMCQI- 482

Query:   108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVAS 167
             +I +C S PC N   C+D  N  + C C E F G  C+  N   C   +PC ++ TCV  
Sbjct:   483 DIDECASTPCQNGAKCIDRPN-GYECRCAEGFEGRLCE-SNIDNCKP-DPC-HHGTCV-- 536

Query:   168 PGEKQITCLC 177
              G    TC C
Sbjct:   537 DGIASYTCNC 546

GO:0030154 "cell differentiation" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA;IGI

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0050768 "negative regulation of neurogenesis" evidence=IEP

GO:0035019 "somatic stem cell maintenance" evidence=IEP

GO:0048259 "regulation of receptor-mediated endocytosis" evidence=IGI

GO:0048793 "pronephros development" evidence=IMP

GO:0001889 "liver development" evidence=IGI;IMP

GO:0001840 "neural plate development" evidence=IGI

GO:0048936 "peripheral nervous system neuron axonogenesis" evidence=IGI

GO:0021654 "rhombomere boundary formation" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	181
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	8e-04

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 35.3 bits (82), Expect = 8e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 42 VDHCLT-DPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
          +D C + +PC   GTC+N    Y+C C P Y+G NCE
Sbjct: 2  IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG1219|consensus	4289		99.64
KOG1214|consensus	1289		99.36
KOG4289|consensus	2531		99.25
KOG1219|consensus	4289		99.06
KOG4289|consensus	2531		99.0
KOG1214|consensus	1289		98.9
KOG1217|consensus	487		98.61
KOG1225|consensus	525		98.61
KOG1217|consensus	487		98.47
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.28
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	98.0
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.95
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.9
KOG4260|consensus	350		97.88
KOG1225|consensus	525		97.83
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.75
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.74
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.7
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.44
KOG4260|consensus	350		97.3
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.22
smart00181	35	EGF Epidermal growth factor-like domain.	97.2
KOG1226|consensus	783		97.12
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.93
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.9
PF12662	24	cEGF: Complement Clr-like EGF-like	96.83
smart00181	35	EGF Epidermal growth factor-like domain.	96.82
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.75
KOG1226|consensus	783		96.65
PF12662	24	cEGF: Complement Clr-like EGF-like	96.53
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.28
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	95.7
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	95.24
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	95.19
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	93.08
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	92.52
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	92.31
KOG0994|consensus	1758		88.87
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	88.72
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	88.05
KOG3516|consensus	1306		87.7
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	87.37
PHA02887	126	EGF-like protein; Provisional	87.2
smart00051	63	DSL delta serrate ligand.	85.5
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	82.95
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	80.15

>KOG1219|consensus

Probab=99.64  E-value=6.6e-16  Score=133.73  Aligned_cols=106  Identities=38%  Similarity=0.940  Sum_probs=92.1

Q ss_pred             cCCCCCCCCCCCEEecCC-CCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRS-DRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDC  121 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~-~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~  121 (181)
                      ++|..+||+++|+|.... +.|.|.|++.|+|+.|+.++.+|                             ..+||..++
T Consensus      3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC-----------------------------~snPC~~Gg 3915 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPC-----------------------------ASNPCLTGG 3915 (4289)
T ss_pred             cccccCcccCCCEecCCCCCceEEeCcccccCcccccccccc-----------------------------cCCCCCCCC
Confidence            789999999999998754 57999999999999998665444                             455667777


Q ss_pred             EEeeCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         122 VCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       122 ~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +|.. ..+.|.|.|+.||+|+.|+...+++|.. ++|.++|.|+|++|+  |+|.|-+||
T Consensus      3916 tCip-~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~-n~C~~gg~C~n~~gs--f~CncT~g~ 3971 (4289)
T KOG1219|consen 3916 TCIP-FYNGFLCNCPNGYTGKRCEARGISECSK-NVCGTGGQCINIPGS--FHCNCTPGI 3971 (4289)
T ss_pred             EEEe-cCCCeeEeCCCCccCceeeccccccccc-ccccCCceeeccCCc--eEeccChhH
Confidence            8877 7888999999999999999855899988 999999999999999  999998764

>KOG1214|consensus

Probab=99.36  E-value=8.1e-12  Score=101.27  Aligned_cols=139  Identities=27%  Similarity=0.693  Sum_probs=86.6

Q ss_pred             cccccCCCCCC-CCceeecCCC-Cc--------------cccCcCCCC--CCCCCCCEEecCCCCeeEeCCCCCc----C
Q psy9688          16 INECETVKDVC-NYGICVNTNG-NG--------------NSKVDHCLT--DPCLGHGTCINRSDRYQCLCTPRYS----G   73 (181)
Q Consensus        16 ~~~c~~~~~~C-~~~~C~~~~~-~~--------------~~~~~~c~~--~~c~~~~~C~~~~~~~~C~c~~g~~----g   73 (181)
                      +++|..+.+.| ....|....+ .|              +.|.++|..  ..|..+..|++..++|.|.|..||.    +
T Consensus       692 ~npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~  771 (1289)
T KOG1214|consen  692 VNPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDR  771 (1289)
T ss_pred             cccceecCcccCCCccccCCCCcceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCC
Confidence            45555555556 5556654432 11              455555543  3477777777777777777777764    2


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCC--CCEEeeCCCCceEeecCCCCcc--CCccccCC
Q psy9688          74 NNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLN--DCVCVDDGNLSFYCNCTEDFTG--EYCQFENS  149 (181)
Q Consensus        74 ~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~--~~~C~~~~~~~~~C~C~~g~~g--~~c~~~~~  149 (181)
                      ..|..-.+.-..++|..+                      ...|.-  .+.|+....+.|+|+|.+||+|  ..|.  ++
T Consensus       772 ~tCV~i~~pap~n~Ce~g----------------------~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~--dv  827 (1289)
T KOG1214|consen  772 HTCVLITPPAPANPCEDG----------------------SHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCT--DV  827 (1289)
T ss_pred             cceEEecCCCCCCccccC----------------------ccccCcCCceEEEecCCceEEEeecCCccCCccccc--cc
Confidence            333311111112233221                      112332  3455553456799999999985  5565  78


Q ss_pred             CCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         150 AACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       150 ~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      |+|.. +-|+..++|++++++  |.|.|++||
T Consensus       828 DeC~p-srChp~A~Cyntpgs--fsC~C~pGy  856 (1289)
T KOG1214|consen  828 DECSP-SRCHPAATCYNTPGS--FSCRCQPGY  856 (1289)
T ss_pred             cccCc-cccCCCceEecCCCc--ceeecccCc
Confidence            99987 889999999999998  889999997

>KOG4289|consensus

Probab=99.25  E-value=9.8e-12  Score=105.36  Aligned_cols=91  Identities=32%  Similarity=0.775  Sum_probs=72.8

Q ss_pred             ecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecC
Q psy9688          57 INRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCT  136 (181)
Q Consensus        57 ~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~  136 (181)
                      ++..+...|.|++||+|..|+.+|+.|                             -+.||.+++.|.. ..+.|+|.|.
T Consensus      1216 i~pvnglrCrCPpGFTgd~CeTeiDlC-----------------------------Ys~pC~nng~C~s-rEggYtCeCr 1265 (2531)
T KOG4289|consen 1216 IHPVNGLRCRCPPGFTGDYCETEIDLC-----------------------------YSGPCGNNGRCRS-REGGYTCECR 1265 (2531)
T ss_pred             ccccCceeEeCCCCCCcccccchhHhh-----------------------------hcCCCCCCCceEE-ecCceeEEec
Confidence            345677899999999999999776555                             3456677778887 8999999999


Q ss_pred             CCCccCCccccCC--CCCCCCCCCCCCCEEeeCCCCcceEEecCCC
Q psy9688         137 EDFTGEYCQFENS--AACVTLNPCQNNATCVASPGEKQITCLCLKE  180 (181)
Q Consensus       137 ~g~~g~~c~~~~~--~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g  180 (181)
                      +||+|.+|+. +.  -.|.. ..|.++++|.+..-+ -|.|+|+.|
T Consensus      1266 pg~tGehCEv-s~~agrCvp-GvC~nggtC~~~~ng-gf~c~Cp~g 1308 (2531)
T KOG4289|consen 1266 PGFTGEHCEV-SARAGRCVP-GVCKNGGTCVNLLNG-GFCCHCPYG 1308 (2531)
T ss_pred             CCccccceee-ecccCcccc-ceecCCCEEeecCCC-ceeccCCCc
Confidence            9999999985 33  24766 889999999876543 388999876

>KOG1219|consensus

Probab=99.06  E-value=4.9e-10  Score=98.75  Aligned_cols=98  Identities=32%  Similarity=0.789  Sum_probs=82.6

Q ss_pred             ccccCCCCCC-CCceeecCCC-Cc-------------cccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCC
Q psy9688          17 NECETVKDVC-NYGICVNTNG-NG-------------NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNG   81 (181)
Q Consensus        17 ~~c~~~~~~C-~~~~C~~~~~-~~-------------~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~   81 (181)
                      ++|.  .++| .++.|...++ +|             ..++.+|.++||..+++|+...+.|.|.|+.||+|..|+.+  
T Consensus      3865 d~C~--~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~-- 3940 (4289)
T KOG1219|consen 3865 DPCN--DNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEAR-- 3940 (4289)
T ss_pred             cccc--cCcccCCCEecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeecc--
Confidence            6676  7889 9999998874 44             45778899999999999999999999999999999999854  


Q ss_pred             CCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCcc
Q psy9688          82 DCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ  145 (181)
Q Consensus        82 ~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~  145 (181)
                                                .+++|+.++|..++.|.+ ..|+|+|.|.+|+.|..|.
T Consensus      3941 --------------------------Gi~eCs~n~C~~gg~C~n-~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3941 --------------------------GISECSKNVCGTGGQCIN-IPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred             --------------------------cccccccccccCCceeec-cCCceEeccChhHhcccCc
Confidence                                      134556667788888988 8999999999999998875

>KOG4289|consensus

Probab=99.00  E-value=1.5e-09  Score=92.64  Aligned_cols=74  Identities=27%  Similarity=0.645  Sum_probs=60.3

Q ss_pred             CCCCCcccCCCCCCcccccCCCCCC-CCceeecCCCCc---c------------ccCcCCCCCCCCCCCEEecCC-CCee
Q psy9688           2 YFKPISLSTLCESDINECETVKDVC-NYGICVNTNGNG---N------------SKVDHCLTDPCLGHGTCINRS-DRYQ   64 (181)
Q Consensus         2 ~C~~g~~g~~C~~~~~~c~~~~~~C-~~~~C~~~~~~~---~------------~~~~~c~~~~c~~~~~C~~~~-~~~~   64 (181)
                      .|++||+|..|++.++.|.  ..+| +++.|+...|+|   |            .....|.+.-|.++++|++.. +.+.
T Consensus      1225 rCPpGFTgd~CeTeiDlCY--s~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~ 1302 (2531)
T KOG4289|consen 1225 RCPPGFTGDYCETEIDLCY--SGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFC 1302 (2531)
T ss_pred             eCCCCCCcccccchhHhhh--cCCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecCCCcee
Confidence            5899999999999999999  8999 999999999998   1            123457777799999999854 5789


Q ss_pred             EeCCCC-CcCCCCC
Q psy9688          65 CLCTPR-YSGNNCE   77 (181)
Q Consensus        65 C~c~~g-~~g~~c~   77 (181)
                      |.|+.| |++..|+
T Consensus      1303 c~Cp~ge~e~prC~ 1316 (2531)
T KOG4289|consen 1303 CHCPYGEFEDPRCE 1316 (2531)
T ss_pred             ccCCCcccCCCceE
Confidence            999988 3355554

>KOG1214|consensus

Probab=98.90  E-value=1.3e-08  Score=83.28  Aligned_cols=105  Identities=29%  Similarity=0.733  Sum_probs=75.7

Q ss_pred             cCCCCCCcccccCCCCCC-CCceeecCCCCc----------------c------ccCcCCCC--CCCCCCC--EEec-CC
Q psy9688           9 STLCESDINECETVKDVC-NYGICVNTNGNG----------------N------SKVDHCLT--DPCLGHG--TCIN-RS   60 (181)
Q Consensus         9 g~~C~~~~~~c~~~~~~C-~~~~C~~~~~~~----------------~------~~~~~c~~--~~c~~~~--~C~~-~~   60 (181)
                      |..|. |+++|+...+.| .++.|++.+++|                |      ...+.|..  +.|...+  .|+. +.
T Consensus       728 gr~c~-d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGg  806 (1289)
T KOG1214|consen  728 GRNCV-DENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGG  806 (1289)
T ss_pred             CCCCC-ChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCC
Confidence            57895 999999888899 999999999987                1      11233322  2244433  4554 44


Q ss_pred             CCeeEeCCCCCcCC--CCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecCCC
Q psy9688          61 DRYQCLCTPRYSGN--NCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTED  138 (181)
Q Consensus        61 ~~~~C~c~~g~~g~--~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g  138 (181)
                      +.|+|.|.+||.|.  .|.                              ++++|.+.-|+..+.|.+ +.+++.|.|.+|
T Consensus       807 s~y~C~CLPGfsGDG~~c~------------------------------dvDeC~psrChp~A~Cyn-tpgsfsC~C~pG  855 (1289)
T KOG1214|consen  807 STYSCACLPGFSGDGHQCT------------------------------DVDECSPSRCHPAATCYN-TPGSFSCRCQPG  855 (1289)
T ss_pred             ceEEEeecCCccCCccccc------------------------------cccccCccccCCCceEec-CCCcceeecccC
Confidence            57999999999853  333                              446666666788889998 899999999999


Q ss_pred             CccCCcc
Q psy9688         139 FTGEYCQ  145 (181)
Q Consensus       139 ~~g~~c~  145 (181)
                      |.|+.-+
T Consensus       856 y~GDGf~  862 (1289)
T KOG1214|consen  856 YYGDGFQ  862 (1289)
T ss_pred             ccCCCce
Confidence            9865443

>KOG1217|consensus

Probab=98.61  E-value=1.3e-06  Score=69.65  Aligned_cols=175  Identities=33%  Similarity=0.754  Sum_probs=117.3

Q ss_pred             CCCCCcccCCCCCCcccccCCCCCC-CCceeecCCCCc------------ccc--------------------CcCCCC-
Q psy9688           2 YFKPISLSTLCESDINECETVKDVC-NYGICVNTNGNG------------NSK--------------------VDHCLT-   47 (181)
Q Consensus         2 ~C~~g~~g~~C~~~~~~c~~~~~~C-~~~~C~~~~~~~------------~~~--------------------~~~c~~-   47 (181)
                      .|..||.+..+....++|......| ..+.|.+..++|            +..                    .+.|.. 
T Consensus       155 ~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~  234 (487)
T KOG1217|consen  155 SCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPECEVS  234 (487)
T ss_pred             eeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCCcccc
Confidence            4788888888875547887556678 888898887765            110                    011111 


Q ss_pred             -CCCCCC-CEEecCCCCeeEeCCCCCcCCCC--CCCCCCCCCCC-CCCCcEEeeCC----------eecccc-ccCCCCC
Q psy9688          48 -DPCLGH-GTCINRSDRYQCLCTPRYSGNNC--EKDNGDCSSNP-CLNDGVCVDEV----------YKGRYW-ELPEIRD  111 (181)
Q Consensus        48 -~~c~~~-~~C~~~~~~~~C~c~~g~~g~~c--~~~~~~c~~~~-c~~~~~C~~~~----------~~g~~c-~~~~~~~  111 (181)
                       ..+... +.|++..+.+.|.+.+||.+..+  ..+++.|.... |.+.+.|++..          |.+..+ ...+...
T Consensus       235 ~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~  314 (487)
T KOG1217|consen  235 IVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDE  314 (487)
T ss_pred             cccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCcccccccc
Confidence             112222 67888888899999999997762  23677787653 77788888764          555555 2223345


Q ss_pred             CC----CCCCCCCCEEee-CCCCceEeecCCCCccCCccccCC-CCCCCCCCCCCCCEEee-CCCCcceEEecCCCC
Q psy9688         112 CT----SNPCLNDCVCVD-DGNLSFYCNCTEDFTGEYCQFENS-AACVTLNPCQNNATCVA-SPGEKQITCLCLKEV  181 (181)
Q Consensus       112 c~----~~~c~~~~~C~~-~~~~~~~C~C~~g~~g~~c~~~~~-~~c~~~~~C~~~~~C~~-~~g~~~~~C~C~~g~  181 (181)
                      |.    ..+|..++.|.. .....+.|.|..+|.|..|+  .. ++|.. ..+..++.|++ ..+.  +.|.|..+|
T Consensus       315 C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~--~~~~~C~~-~~~~~~~~c~~~~~~~--~~c~~~~~~  386 (487)
T KOG1217|consen  315 CSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCE--DSNDECAS-SPCCPGGTCVNETPGS--YRCACPAGF  386 (487)
T ss_pred             ccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccc--cCCccccC-CccccCCEeccCCCCC--eEecCCCcc
Confidence            53    345777777721 13345779999999999998  44 47877 56888999998 5776  889988765

>KOG1225|consensus

Probab=98.61  E-value=4.5e-07  Score=72.19  Aligned_cols=80  Identities=38%  Similarity=1.036  Sum_probs=42.0

Q ss_pred             CCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCC------eeccccccCCCCCCCCCCCCCCCEE
Q psy9688          50 CLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV------YKGRYWELPEIRDCTSNPCLNDCVC  123 (181)
Q Consensus        50 c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~------~~g~~c~~~~~~~c~~~~c~~~~~C  123 (181)
                      |..++.|++.    +|+|++||+|..|.+  ..|... |+.++.+++..      |.|..|..   ..| +.+|..++.|
T Consensus       256 c~~~g~c~~G----~CIC~~Gf~G~dC~e--~~Cp~~-cs~~g~~~~g~CiC~~g~~G~dCs~---~~c-padC~g~G~C  324 (525)
T KOG1225|consen  256 CTGRGQCVEG----RCICPPGFTGDDCDE--LVCPVD-CSGGGVCVDGECICNPGYSGKDCSI---RRC-PADCSGHGKC  324 (525)
T ss_pred             CcccceEeCC----eEeCCCCCcCCCCCc--ccCCcc-cCCCceecCCEeecCCCcccccccc---ccC-CccCCCCCcc
Confidence            4445566655    677777777776653  223222 33333333222      55555542   122 2456666666


Q ss_pred             eeCCCCceEeecCCCCccCCcc
Q psy9688         124 VDDGNLSFYCNCTEDFTGEYCQ  145 (181)
Q Consensus       124 ~~~~~~~~~C~C~~g~~g~~c~  145 (181)
                      +.     -+|.|.+||+|..|.
T Consensus       325 i~-----G~C~C~~Gy~G~~C~  341 (525)
T KOG1225|consen  325 ID-----GECLCDEGYTGELCI  341 (525)
T ss_pred             cC-----CceEeCCCCcCCccc
Confidence            53     247777777777665

>KOG1217|consensus

Probab=98.47  E-value=4.1e-06  Score=66.75  Aligned_cols=122  Identities=37%  Similarity=0.895  Sum_probs=82.0

Q ss_pred             cCCC--CCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeC------C-eeccccccCCCCCCC
Q psy9688          43 DHCL--TDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDE------V-YKGRYWELPEIRDCT  113 (181)
Q Consensus        43 ~~c~--~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~------~-~~g~~c~~~~~~~c~  113 (181)
                      ++|.  ..+|.+.+.|.+..+.|.|.|+++|.+..++..         .....|...      . +.+..+.. .+..+.
T Consensus       170 ~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~---------~~~~~c~~~~~~~~~~g~~~~~c~~-~~~~~~  239 (487)
T KOG1217|consen  170 DECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETT---------GNGGTCVDSVACSCPPGARGPECEV-SIVECA  239 (487)
T ss_pred             cccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCC---------CCCceEecceeccCCCCCCCCCccc-cccccc
Confidence            5675  345888889998888899999999998887633         111222211      0 11222221 122222


Q ss_pred             CCCCCCCCEEeeCCCCceEeecCCCCccCCc-cccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         114 SNPCLNDCVCVDDGNLSFYCNCTEDFTGEYC-QFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       114 ~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c-~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ..   . ++|++ ..+.+.|.|++||.+..+ ...+++.|.....|.++++|++..+.  |.|.|++||
T Consensus       240 ~~---~-~~c~~-~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~--~~C~C~~g~  301 (487)
T KOG1217|consen  240 SG---D-GTCVN-TVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGS--YRCTCPPGF  301 (487)
T ss_pred             CC---C-Ccccc-cCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCc--ceeeCCCCC
Confidence            11   2 78888 788899999999998762 21267888772239999999999987  889999987

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.28  E-value=7.3e-07  Score=46.88  Aligned_cols=32  Identities=28%  Similarity=0.707  Sum_probs=28.1

Q ss_pred             CCCCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ||++|.. .+.|..++.|+|+.|+  |.|.|++||
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gs--y~C~C~~Gy   33 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGS--YSCSCPPGY   33 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTE--EEEEESTTE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCC--EEeeCCCCc
Confidence            5788876 4679889999999999  899999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=98.00  E-value=1.7e-05  Score=40.70  Aligned_cols=36  Identities=44%  Similarity=1.231  Sum_probs=30.6

Q ss_pred             cCcCCCC-CCCCCCCEEecCCCCeeEeCCCCCc-CCCC
Q psy9688          41 KVDHCLT-DPCLGHGTCINRSDRYQCLCTPRYS-GNNC   76 (181)
Q Consensus        41 ~~~~c~~-~~c~~~~~C~~~~~~~~C~c~~g~~-g~~c   76 (181)
                      ++++|.. .+|.++++|++..+.|.|.|++||. |..|
T Consensus         1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C   38 (39)
T smart00179        1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC   38 (39)
T ss_pred             CcccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence            3567866 7899888999999999999999998 7765

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.95  E-value=4.2e-06  Score=41.16  Aligned_cols=30  Identities=43%  Similarity=1.166  Sum_probs=26.5

Q ss_pred             CCCCCCCCCCEEecCC-CCeeEeCCCCCcCC
Q psy9688          45 CLTDPCLGHGTCINRS-DRYQCLCTPRYSGN   74 (181)
Q Consensus        45 c~~~~c~~~~~C~~~~-~~~~C~c~~g~~g~   74 (181)
                      |.+.+|.++++|+... +.|.|.|++||+|+
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            4567999999999887 88999999999885

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.90  E-value=9e-06  Score=39.97  Aligned_cols=31  Identities=39%  Similarity=0.954  Sum_probs=25.8

Q ss_pred             CCCCCCCCCCEEeeCCC-CceEeecCCCCccCC
Q psy9688         112 CTSNPCLNDCVCVDDGN-LSFYCNCTEDFTGEY  143 (181)
Q Consensus       112 c~~~~c~~~~~C~~~~~-~~~~C~C~~g~~g~~  143 (181)
                      |.+.+|.++++|++ .. +.|+|.|++||+|+.
T Consensus         1 C~~~~C~n~g~C~~-~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    1 CSSNPCQNGGTCID-LPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTTTSSTTTEEEEE-ESTSEEEEEEBTTEESTT
T ss_pred             CCCCcCCCCeEEEe-CCCCCEEeECCCCCccCC
Confidence            34568899999998 66 899999999999863

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG4260|consensus

Probab=97.88  E-value=1.4e-05  Score=57.95  Aligned_cols=124  Identities=27%  Similarity=0.696  Sum_probs=74.9

Q ss_pred             CCCCCCCCEEecC---CCCeeEeCCCCCcCCCCCCCC--------CCCCC--CCCCC--CcEEeeCC----------e--
Q psy9688          47 TDPCLGHGTCINR---SDRYQCLCTPRYSGNNCEKDN--------GDCSS--NPCLN--DGVCVDEV----------Y--   99 (181)
Q Consensus        47 ~~~c~~~~~C~~~---~~~~~C~c~~g~~g~~c~~~~--------~~c~~--~~c~~--~~~C~~~~----------~--   99 (181)
                      ..+|+.++.|...   .++-.|.|.+||.|..|..-.        ++-..  ..|..  .+.|....          |  
T Consensus       149 er~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~l  228 (350)
T KOG4260|consen  149 ERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKGCSKCKKGWKL  228 (350)
T ss_pred             cCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCCCCChhhhccccee
Confidence            3568888888632   245689999999998885210        00000  00110  01221111          2  


Q ss_pred             eccccccCCCCCCC--CCCCCCCCEEeeCCCCceEeecCCCCccC--CccccCCCCCCCCCCCCCCCEEeeCCCCcceEE
Q psy9688         100 KGRYWELPEIRDCT--SNPCLNDCVCVDDGNLSFYCNCTEDFTGE--YCQFENSAACVTLNPCQNNATCVASPGEKQITC  175 (181)
Q Consensus       100 ~g~~c~~~~~~~c~--~~~c~~~~~C~~~~~~~~~C~C~~g~~g~--~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C  175 (181)
                      +-..|.  ++++|.  +.||.....|+| +.|+|.|.+.+||.+.  .|+. -.+.|.     ..+..|++++++  |.|
T Consensus       229 de~gCv--DvnEC~~ep~~c~~~qfCvN-teGSf~C~dk~Gy~~g~d~C~~-~~d~~~-----~kn~~c~ni~~~--~r~  297 (350)
T KOG4260|consen  229 DEEGCV--DVNECQNEPAPCKAHQFCVN-TEGSFKCEDKEGYKKGVDECQF-CADVCA-----SKNRPCMNIDGQ--YRC  297 (350)
T ss_pred             cccccc--cHHHHhcCCCCCChhheeec-CCCceEecccccccCChHHhhh-hhhhcc-----cCCCCcccCCcc--EEE
Confidence            122233  788886  357999999999 9999999999998742  2221 112222     244578899998  779


Q ss_pred             ecCCCC
Q psy9688         176 LCLKEV  181 (181)
Q Consensus       176 ~C~~g~  181 (181)
                      +|..|+
T Consensus       298 v~f~~~  303 (350)
T KOG4260|consen  298 VCFSGL  303 (350)
T ss_pred             Eecccc
Confidence            987764

>KOG1225|consensus

Probab=97.83  E-value=0.00015  Score=58.08  Aligned_cols=96  Identities=30%  Similarity=0.761  Sum_probs=65.7

Q ss_pred             eeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCC------eeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecC
Q psy9688          63 YQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCT  136 (181)
Q Consensus        63 ~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~------~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~  136 (181)
                      ..|.|..+|.|..|+. + .| +..|...+.|+.-.      |.|..|..   ..|... |..++.+++   +  +|.|+
T Consensus       234 ~ic~c~~~~~g~~c~~-~-~C-~~~c~~~g~c~~G~CIC~~Gf~G~dC~e---~~Cp~~-cs~~g~~~~---g--~CiC~  301 (525)
T KOG1225|consen  234 GICECPEGYFGPLCST-I-YC-PGGCTGRGQCVEGRCICPPGFTGDDCDE---LVCPVD-CSGGGVCVD---G--ECICN  301 (525)
T ss_pred             ceeecCCceeCCcccc-c-cC-CCCCcccceEeCCeEeCCCCCcCCCCCc---ccCCcc-cCCCceecC---C--EeecC
Confidence            4789999999988872 2 24 34444445554432      77777752   344333 767677754   2  79999


Q ss_pred             CCCccCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         137 EDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       137 ~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +||+|+.|+.   ..|.  .+|..++.|+  .|.    |.|.+||
T Consensus       302 ~g~~G~dCs~---~~cp--adC~g~G~Ci--~G~----C~C~~Gy  335 (525)
T KOG1225|consen  302 PGYSGKDCSI---RRCP--ADCSGHGKCI--DGE----CLCDEGY  335 (525)
T ss_pred             CCcccccccc---ccCC--ccCCCCCccc--CCc----eEeCCCC
Confidence            9999999963   4463  5899999998  544    9998887

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.75  E-value=1.9e-05  Score=41.41  Aligned_cols=32  Identities=38%  Similarity=1.030  Sum_probs=27.4

Q ss_pred             cCcCCCC--CCCCCCCEEecCCCCeeEeCCCCCc
Q psy9688          41 KVDHCLT--DPCLGHGTCINRSDRYQCLCTPRYS   72 (181)
Q Consensus        41 ~~~~c~~--~~c~~~~~C~~~~~~~~C~c~~g~~   72 (181)
                      |+++|..  ..|...+.|+|..++|.|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            5678855  3588889999999999999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.74  E-value=7.2e-05  Score=38.26  Aligned_cols=35  Identities=43%  Similarity=1.019  Sum_probs=28.4

Q ss_pred             CCCCCC-CCCCCCCEEeeCCCCceEeecCCCCc-cCCc
Q psy9688         109 IRDCTS-NPCLNDCVCVDDGNLSFYCNCTEDFT-GEYC  144 (181)
Q Consensus       109 ~~~c~~-~~c~~~~~C~~~~~~~~~C~C~~g~~-g~~c  144 (181)
                      +++|.. .+|..+++|++ ..+.|.|.|++||. |..|
T Consensus         2 ~~~C~~~~~C~~~~~C~~-~~g~~~C~C~~g~~~g~~C   38 (39)
T smart00179        2 IDECASGNPCQNGGTCVN-TVGSYRCECPPGYTDGRNC   38 (39)
T ss_pred             cccCcCCCCcCCCCEeEC-CCCCeEeECCCCCccCCcC
Confidence            355655 57888889998 88899999999998 7766

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.70  E-value=0.00011  Score=37.22  Aligned_cols=35  Identities=46%  Similarity=1.268  Sum_probs=29.6

Q ss_pred             CcCCCC-CCCCCCCEEecCCCCeeEeCCCCCcCCCC
Q psy9688          42 VDHCLT-DPCLGHGTCINRSDRYQCLCTPRYSGNNC   76 (181)
Q Consensus        42 ~~~c~~-~~c~~~~~C~~~~~~~~C~c~~g~~g~~c   76 (181)
                      +++|.. .+|.+++.|++..+.|.|.|+.||.|..|
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C   37 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC   37 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence            466765 68888889999999999999999998766

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.44  E-value=0.00033  Score=35.32  Aligned_cols=34  Identities=41%  Similarity=1.010  Sum_probs=27.4

Q ss_pred             CCCCC-CCCCCCCEEeeCCCCceEeecCCCCccCCc
Q psy9688         110 RDCTS-NPCLNDCVCVDDGNLSFYCNCTEDFTGEYC  144 (181)
Q Consensus       110 ~~c~~-~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c  144 (181)
                      ++|.. .+|..++.|++ ..+.|.|.|+.||.|..|
T Consensus         3 ~~C~~~~~C~~~~~C~~-~~~~~~C~C~~g~~g~~C   37 (38)
T cd00054           3 DECASGNPCQNGGTCVN-TVGSYRCSCPPGYTGRNC   37 (38)
T ss_pred             ccCCCCCCcCCCCEeEC-CCCCeEeECCCCCcCCcC
Confidence            45555 56777789988 888899999999998766

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG4260|consensus

Probab=97.30  E-value=0.00014  Score=52.88  Aligned_cols=69  Identities=32%  Similarity=0.611  Sum_probs=44.4

Q ss_pred             CCCCcccC--CCCCCcccccCCCCCC-CCceeecCCCCc-ccc-------CcCCCC--CCC-CCCCEEecCCCCeeEeCC
Q psy9688           3 FKPISLST--LCESDINECETVKDVC-NYGICVNTNGNG-NSK-------VDHCLT--DPC-LGHGTCINRSDRYQCLCT   68 (181)
Q Consensus         3 C~~g~~g~--~C~~~~~~c~~~~~~C-~~~~C~~~~~~~-~~~-------~~~c~~--~~c-~~~~~C~~~~~~~~C~c~   68 (181)
                      |..||...  .|. |||+|...+.+| .+.+|+|+.|+| +.+       +|+|+.  .-| ..+..|+++.+.|.|+|.
T Consensus       222 CkkGW~lde~gCv-DvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f  300 (350)
T KOG4260|consen  222 CKKGWKLDEEGCV-DVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVDECQFCADVCASKNRPCMNIDGQYRCVCF  300 (350)
T ss_pred             hcccceecccccc-cHHHHhcCCCCCChhheeecCCCceEecccccccCChHHhhhhhhhcccCCCCcccCCccEEEEec
Confidence            55666542  463 788887667777 777888888887 333       444532  112 344567777777888877


Q ss_pred             CCCc
Q psy9688          69 PRYS   72 (181)
Q Consensus        69 ~g~~   72 (181)
                      .++.
T Consensus       301 ~~~~  304 (350)
T KOG4260|consen  301 SGLI  304 (350)
T ss_pred             ccce
Confidence            7764

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.22  E-value=0.00097  Score=32.99  Aligned_cols=30  Identities=43%  Similarity=1.316  Sum_probs=25.6

Q ss_pred             CCCCCCCCEEecCCCCeeEeCCCCCcCC-CC
Q psy9688          47 TDPCLGHGTCINRSDRYQCLCTPRYSGN-NC   76 (181)
Q Consensus        47 ~~~c~~~~~C~~~~~~~~C~c~~g~~g~-~c   76 (181)
                      ..+|.+++.|++..+.|.|.|+.||.|. .|
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C   35 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSC   35 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence            5678888999998889999999999887 44

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.20  E-value=0.001  Score=33.05  Aligned_cols=31  Identities=45%  Similarity=1.221  Sum_probs=25.4

Q ss_pred             CCC-CCCCCCCEEecCCCCeeEeCCCCCcC-CCC
Q psy9688          45 CLT-DPCLGHGTCINRSDRYQCLCTPRYSG-NNC   76 (181)
Q Consensus        45 c~~-~~c~~~~~C~~~~~~~~C~c~~g~~g-~~c   76 (181)
                      |.. .+|.++ .|++..+.|.|.|++||.| ..|
T Consensus         2 C~~~~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C   34 (35)
T smart00181        2 CASGGPCSNG-TCINTPGSYTCSCPPGYTGDKRC   34 (35)
T ss_pred             CCCcCCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence            444 578877 9999888999999999988 554

>KOG1226|consensus

Probab=97.12  E-value=0.0097  Score=49.52  Aligned_cols=107  Identities=28%  Similarity=0.628  Sum_probs=66.7

Q ss_pred             CCCCCCEEecCCCCeeEeCCCCCcCCCCCCCC---------CCCC----CCCCCCCcEEeeCC----------eeccccc
Q psy9688          49 PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDN---------GDCS----SNPCLNDGVCVDEV----------YKGRYWE  105 (181)
Q Consensus        49 ~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~---------~~c~----~~~c~~~~~C~~~~----------~~g~~c~  105 (181)
                      .|..+|+.+=+    .|.|.+||.|+.|+-..         +.|.    ..+|+..+.|.-..          +.|..|+
T Consensus       468 ~C~g~G~~~CG----~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fCE  543 (783)
T KOG1226|consen  468 LCHGNGTFVCG----QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFCE  543 (783)
T ss_pred             ccCCCCcEEec----ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCCceeeeeee
Confidence            35555555444    78999999999986322         1121    12577777665332          4577777


Q ss_pred             cCCCCCCCCC---CCCCCCEEeeCCCCceEeecCCCCccCCcccc-CCCCCCC--CCCCCCCCEEe
Q psy9688         106 LPEIRDCTSN---PCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFE-NSAACVT--LNPCQNNATCV  165 (181)
Q Consensus       106 ~~~~~~c~~~---~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~-~~~~c~~--~~~C~~~~~C~  165 (181)
                      . +.-.|...   .|..++.|.=     -.|+|.+||+|..|+.. +.+.|..  ...|...|.|.
T Consensus       544 C-DnfsC~r~~g~lC~g~G~C~C-----G~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~  603 (783)
T KOG1226|consen  544 C-DNFSCERHKGVLCGGHGRCEC-----GRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCE  603 (783)
T ss_pred             c-cCcccccccCcccCCCCeEeC-----CcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceee
Confidence            6 33344432   5888888843     26999999999998751 3455654  12366666664

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.93  E-value=0.00058  Score=34.38  Aligned_cols=24  Identities=38%  Similarity=0.779  Sum_probs=18.9

Q ss_pred             CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         156 NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       156 ~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +.|+.+++|++++++  |.|.|++||
T Consensus         6 ~~C~~nA~C~~~~~~--~~C~C~~Gy   29 (36)
T PF12947_consen    6 GGCHPNATCTNTGGS--YTCTCKPGY   29 (36)
T ss_dssp             GGS-TTCEEEE-TTS--EEEEE-CEE
T ss_pred             CCCCCCcEeecCCCC--EEeECCCCC
Confidence            579999999999997  999999987

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.90  E-value=0.0025  Score=31.46  Aligned_cols=30  Identities=43%  Similarity=0.978  Sum_probs=24.2

Q ss_pred             CCCCCCCCEEeeCCCCceEeecCCCCccC-Cc
Q psy9688         114 SNPCLNDCVCVDDGNLSFYCNCTEDFTGE-YC  144 (181)
Q Consensus       114 ~~~c~~~~~C~~~~~~~~~C~C~~g~~g~-~c  144 (181)
                      ..+|..++.|++ ..+.|.|.|+.||.|. .|
T Consensus         5 ~~~C~~~~~C~~-~~~~~~C~C~~g~~g~~~C   35 (36)
T cd00053           5 SNPCSNGGTCVN-TPGSYRCVCPPGYTGDRSC   35 (36)
T ss_pred             CCCCCCCCEEec-CCCCeEeECCCCCcccCCc
Confidence            346777789988 7788999999999877 44

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.83  E-value=0.0014  Score=29.65  Aligned_cols=20  Identities=45%  Similarity=1.178  Sum_probs=15.0

Q ss_pred             CeeEeCCCCCc----CCCCCCCCCC
Q psy9688          62 RYQCLCTPRYS----GNNCEKDNGD   82 (181)
Q Consensus        62 ~~~C~c~~g~~----g~~c~~~~~~   82 (181)
                      +|.|.|++||.    |..|. +|+|
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~-DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCE-DIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccc-cCCC
Confidence            58999999998    55665 5553

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.82  E-value=0.003  Score=31.31  Aligned_cols=28  Identities=36%  Similarity=1.020  Sum_probs=22.9

Q ss_pred             CCCCCCCEEeeCCCCceEeecCCCCcc-CCc
Q psy9688         115 NPCLNDCVCVDDGNLSFYCNCTEDFTG-EYC  144 (181)
Q Consensus       115 ~~c~~~~~C~~~~~~~~~C~C~~g~~g-~~c  144 (181)
                      .+|..+ .|++ ..+.|.|.|++||.+ ..|
T Consensus         6 ~~C~~~-~C~~-~~~~~~C~C~~g~~g~~~C   34 (35)
T smart00181        6 GPCSNG-TCIN-TPGSYTCSCPPGYTGDKRC   34 (35)
T ss_pred             CCCCCC-EEEC-CCCCeEeECCCCCccCCcc
Confidence            467776 8988 788999999999988 554

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.75  E-value=0.0013  Score=33.14  Aligned_cols=26  Identities=23%  Similarity=0.786  Sum_probs=20.5

Q ss_pred             CCCCCCEEeeCCCCceEeecCCCCccC
Q psy9688         116 PCLNDCVCVDDGNLSFYCNCTEDFTGE  142 (181)
Q Consensus       116 ~c~~~~~C~~~~~~~~~C~C~~g~~g~  142 (181)
                      .|+.+++|++ ..++|.|.|.+||.|+
T Consensus         7 ~C~~nA~C~~-~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTN-TGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             GS-TTCEEEE--TTSEEEEE-CEEECC
T ss_pred             CCCCCcEeec-CCCCEEeECCCCCccC
Confidence            5788899999 8889999999999865

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG1226|consensus

Probab=96.65  E-value=0.026  Score=47.10  Aligned_cols=89  Identities=31%  Similarity=0.723  Sum_probs=43.6

Q ss_pred             CCCCCCEEecCCCCeeEeCCCCCc----CCCCCCCCCCCCC---CCCCCCcEEeeCC------eeccccccC-CCCCCCC
Q psy9688          49 PCLGHGTCINRSDRYQCLCTPRYS----GNNCEKDNGDCSS---NPCLNDGVCVDEV------YKGRYWELP-EIRDCTS  114 (181)
Q Consensus        49 ~c~~~~~C~~~~~~~~C~c~~g~~----g~~c~~~~~~c~~---~~c~~~~~C~~~~------~~g~~c~~~-~~~~c~~  114 (181)
                      +|..+|.|+=+    .|.|.+...    |..|+-+.-.|..   ..|...+.|.-..      |+|..|.++ +.+.|..
T Consensus       515 vCSgrG~C~CG----qC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG~CvC~~GwtG~~C~C~~std~C~~  590 (783)
T KOG1226|consen  515 VCSGRGDCVCG----QCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECGRCVCNPGWTGSACNCPLSTDTCES  590 (783)
T ss_pred             CcCCCCcEeCC----ceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCCcEEcCCCCccCCCCCCCCCccccC
Confidence            45555555433    455544433    5555433222321   1244444443322      555555542 2344443


Q ss_pred             C---CCCCCCEEeeCCCCceEeecCCC-CccCCccc
Q psy9688         115 N---PCLNDCVCVDDGNLSFYCNCTED-FTGEYCQF  146 (181)
Q Consensus       115 ~---~c~~~~~C~~~~~~~~~C~C~~g-~~g~~c~~  146 (181)
                      .   -|..+++|.=     -+|.|... |.|..|+.
T Consensus       591 ~~G~iCSGrG~C~C-----g~C~C~~~~~sG~~CE~  621 (783)
T KOG1226|consen  591 SDGQICSGRGTCEC-----GRCKCTDPPYSGEFCEK  621 (783)
T ss_pred             CCCceeCCCceeeC-----CceEcCCCCcCcchhhc
Confidence            2   3666666643     14777665 88888863

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.53  E-value=0.0027  Score=28.78  Aligned_cols=20  Identities=25%  Similarity=0.874  Sum_probs=14.6

Q ss_pred             ceEeecCCCCc----cCCccccCCCC
Q psy9688         130 SFYCNCTEDFT----GEYCQFENSAA  151 (181)
Q Consensus       130 ~~~C~C~~g~~----g~~c~~~~~~~  151 (181)
                      +|+|.|++||.    |..|.  +|++
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~--DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCE--DIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccc--cCCC
Confidence            48999999997    45565  5553

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.28  E-value=0.0022  Score=24.62  Aligned_cols=13  Identities=38%  Similarity=1.122  Sum_probs=10.2

Q ss_pred             EeecCCCCccCCc
Q psy9688         132 YCNCTEDFTGEYC  144 (181)
Q Consensus       132 ~C~C~~g~~g~~c  144 (181)
                      +|+|++||+|.+|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4899999999876

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=95.70  E-value=0.02  Score=27.90  Aligned_cols=27  Identities=41%  Similarity=1.153  Sum_probs=21.8

Q ss_pred             CCCCCCCEEecCCCCeeEeCCCCCcCCCC
Q psy9688          48 DPCLGHGTCINRSDRYQCLCTPRYSGNNC   76 (181)
Q Consensus        48 ~~c~~~~~C~~~~~~~~C~c~~g~~g~~c   76 (181)
                      ..|..+++|+..  ...|+|.+||.|..|
T Consensus         6 ~~C~~~G~C~~~--~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSP--CGRCVCDSGYTGPDC   32 (32)
T ss_pred             CccCCCCEEeCC--CCEEECCCCCcCCCC
Confidence            458899999854  349999999998765

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=95.24  E-value=0.031  Score=27.23  Aligned_cols=26  Identities=31%  Similarity=0.718  Sum_probs=20.9

Q ss_pred             CCCCCCEEeeCCCCceEeecCCCCccCCc
Q psy9688         116 PCLNDCVCVDDGNLSFYCNCTEDFTGEYC  144 (181)
Q Consensus       116 ~c~~~~~C~~~~~~~~~C~C~~g~~g~~c  144 (181)
                      .|.++++|+. .  ..+|.|.+||.|+.|
T Consensus         7 ~C~~~G~C~~-~--~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVS-P--CGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeC-C--CCEEECCCCCcCCCC
Confidence            5788899975 3  358999999999865

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=95.19  E-value=0.016  Score=29.05  Aligned_cols=21  Identities=33%  Similarity=0.895  Sum_probs=17.2

Q ss_pred             CCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         157 PCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       157 ~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      .|.+  +|++++++  |.|.|++||
T Consensus         7 gC~h--~C~~~~g~--~~C~C~~Gy   27 (36)
T PF14670_consen    7 GCSH--ICVNTPGS--YRCSCPPGY   27 (36)
T ss_dssp             GSSS--EEEEETTS--EEEE-STTE
T ss_pred             CcCC--CCccCCCc--eEeECCCCC
Confidence            4666  99999998  999999997

...

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=93.08  E-value=0.071  Score=26.72  Aligned_cols=19  Identities=37%  Similarity=1.074  Sum_probs=16.2

Q ss_pred             CEEecCCCCeeEeCCCCCc
Q psy9688          54 GTCINRSDRYQCLCTPRYS   72 (181)
Q Consensus        54 ~~C~~~~~~~~C~c~~g~~   72 (181)
                      ..|++..++|.|.|++||.
T Consensus        10 h~C~~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   10 HICVNTPGSYRCSCPPGYK   28 (36)
T ss_dssp             SEEEEETTSEEEE-STTEE
T ss_pred             CCCccCCCceEeECCCCCE
Confidence            4799989999999999997

...

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=92.52  E-value=0.16  Score=36.67  Aligned_cols=35  Identities=31%  Similarity=0.852  Sum_probs=27.6

Q ss_pred             cCCccccCCCCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         141 GEYCQFENSAACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       141 g~~c~~~~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +..|.  ++++|.. .+.|..  .|+++.|+  |.|.|++||
T Consensus       181 ~~~C~--~~~~C~~~~~~c~~--~C~~~~g~--~~c~c~~g~  216 (224)
T cd01475         181 GKICV--VPDLCATLSHVCQQ--VCISTPGS--YLCACTEGY  216 (224)
T ss_pred             cccCc--CchhhcCCCCCccc--eEEcCCCC--EEeECCCCc
Confidence            56676  6778865 356765  89999999  899999997

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=92.31  E-value=0.099  Score=26.23  Aligned_cols=28  Identities=18%  Similarity=0.413  Sum_probs=18.9

Q ss_pred             CCCCCCCCCEEeeCCCCceEeecCCCCc
Q psy9688         113 TSNPCLNDCVCVDDGNLSFYCNCTEDFT  140 (181)
Q Consensus       113 ~~~~c~~~~~C~~~~~~~~~C~C~~g~~  140 (181)
                      ....|+.++.|++...|.+.|.|..||+
T Consensus         3 ~~~~cP~NA~C~~~~dG~eecrCllgyk   30 (37)
T PF12946_consen    3 IDTKCPANAGCFRYDDGSEECRCLLGYK   30 (37)
T ss_dssp             SSS---TTEEEEEETTSEEEEEE-TTEE
T ss_pred             cCccCCCCcccEEcCCCCEEEEeeCCcc
Confidence            3446788889987344999999999997

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>KOG0994|consensus

Probab=88.87  E-value=1.7  Score=38.79  Aligned_cols=17  Identities=41%  Similarity=0.974  Sum_probs=14.4

Q ss_pred             CeeEeCCCCCcCCCCCC
Q psy9688          62 RYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        62 ~~~C~c~~g~~g~~c~~   78 (181)
                      ...|.|.+||+|..|++
T Consensus       933 ~ivC~C~~GY~G~RCe~  949 (1758)
T KOG0994|consen  933 QIVCHCQEGYSGSRCEI  949 (1758)
T ss_pred             ceeeecccCccccchhh
Confidence            35899999999999874

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=88.72  E-value=0.56  Score=33.91  Aligned_cols=35  Identities=29%  Similarity=0.519  Sum_probs=25.8

Q ss_pred             cccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcC
Q psy9688          39 NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSG   73 (181)
Q Consensus        39 ~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g   73 (181)
                      |.+.++|...+......|.+..+.|.|.|++||+.
T Consensus       184 C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~  218 (224)
T cd01475         184 CVVPDLCATLSHVCQQVCISTPGSYLCACTEGYAL  218 (224)
T ss_pred             CcCchhhcCCCCCccceEEcCCCCEEeECCCCccC
Confidence            56677785433222357999999999999999974

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=88.05  E-value=0.17  Score=35.21  Aligned_cols=48  Identities=21%  Similarity=0.568  Sum_probs=25.9

Q ss_pred             ceEeecCCCCc---cCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         130 SFYCNCTEDFT---GEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       130 ~~~C~C~~g~~---g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ...|+|..|+.   ...|.......|..  .|..+-.|-...+-  |.|.+.+||
T Consensus       109 ~~~CSC~IGkV~~dn~kCtk~G~T~C~L--KCk~nE~CK~~~~~--Y~C~~~~~~  159 (197)
T PF06247_consen  109 NPTCSCNIGKVPDDNKKCTKTGETKCSL--KCKENEECKLVDGY--YKCVCKEGF  159 (197)
T ss_dssp             EEEEEE-TEEETTTTTESEEEE----------TTTEEEEEETTE--EEEEE-TT-
T ss_pred             CceeEeeeceEeccCCcccCCCccceee--ecCCCcceeeeCcE--EEeecCCCC
Confidence            34899998875   34454323334543  56777789888775  889988775

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>KOG3516|consensus

Probab=87.70  E-value=0.59  Score=41.39  Aligned_cols=44  Identities=30%  Similarity=0.750  Sum_probs=37.9

Q ss_pred             cccCcCCCCCCCCCCCEEecCCCCeeEeCC-CCCcCCCCCCCCCC
Q psy9688          39 NSKVDHCLTDPCLGHGTCINRSDRYQCLCT-PRYSGNNCEKDNGD   82 (181)
Q Consensus        39 ~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~-~g~~g~~c~~~~~~   82 (181)
                      |.-++.|.|++|.+++.|......+.|.|. .||.|..|...+.+
T Consensus       542 C~i~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi~e  586 (1306)
T KOG3516|consen  542 CGISDRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSIYE  586 (1306)
T ss_pred             cccccccCCccccCCCcccccccceeEeccccccccccccCCCcc
Confidence            556788999999999999998888999998 99999999876644

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=87.37  E-value=0.81  Score=29.80  Aligned_cols=28  Identities=36%  Similarity=0.863  Sum_probs=22.1

Q ss_pred             CCCCCCEEecC--CCCeeEeCCCCCcCCCCC
Q psy9688          49 PCLGHGTCINR--SDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        49 ~c~~~~~C~~~--~~~~~C~c~~g~~g~~c~   77 (181)
                      -|.++ .|.-.  ...+.|.|..||+|.+|+
T Consensus        52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRCE   81 (139)
T PHA03099         52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRCQ   81 (139)
T ss_pred             EeECC-EEEeeccCCCceeECCCCccccccc
Confidence            36664 78643  457899999999999997

>PHA02887 EGF-like protein; Provisional

Probab=87.20  E-value=0.86  Score=29.18  Aligned_cols=27  Identities=37%  Similarity=1.085  Sum_probs=21.6

Q ss_pred             CCCCCEEecC--CCCeeEeCCCCCcCCCCC
Q psy9688          50 CLGHGTCINR--SDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        50 c~~~~~C~~~--~~~~~C~c~~g~~g~~c~   77 (181)
                      |. +|+|.-.  .....|.|..||+|.+|+
T Consensus        94 Ci-HG~C~yI~dL~epsCrC~~GYtG~RCE  122 (126)
T PHA02887         94 CI-NGECMNIIDLDEKFCICNKGYTGIRCD  122 (126)
T ss_pred             ee-CCEEEccccCCCceeECCCCcccCCCC
Confidence            66 4688643  446899999999999997

>smart00051 DSL delta serrate ligand

Probab=85.50  E-value=1.7  Score=24.74  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=28.6

Q ss_pred             eEeecCCCCccCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         131 FYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       131 ~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +.-.|.++|.|..|..    .|...+.+..+.+|-. .|.    ++|.+||
T Consensus        17 ~rv~C~~~~yG~~C~~----~C~~~~d~~~~~~Cd~-~G~----~~C~~Gw   58 (63)
T smart00051       17 IRVTCDENYYGEGCNK----FCRPRDDFFGHYTCDE-NGN----KGCLEGW   58 (63)
T ss_pred             EEeeCCCCCcCCccCC----EeCcCccccCCccCCc-CCC----EecCCCC
Confidence            4566888999998862    3433244566778853 565    8899987

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=82.95  E-value=0.61  Score=32.59  Aligned_cols=88  Identities=24%  Similarity=0.573  Sum_probs=46.0

Q ss_pred             CCCCCCCEEecCC-----CCeeEeCCCCCcCC--CCCCCCCCCCCCCCCCCcEEeeCC----------------eecccc
Q psy9688          48 DPCLGHGTCINRS-----DRYQCLCTPRYSGN--NCEKDNGDCSSNPCLNDGVCVDEV----------------YKGRYW  104 (181)
Q Consensus        48 ~~c~~~~~C~~~~-----~~~~C~c~~g~~g~--~c~~~~~~c~~~~c~~~~~C~~~~----------------~~g~~c  104 (181)
                      .+|...+.|++..     ..|.|.|.+||...  .|.  .+.|....|. .+.|+...                .+...|
T Consensus        50 K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCv--p~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kC  126 (197)
T PF06247_consen   50 KPCGDYAKCINQANKGEERAYKCDCINGYILKQGVCV--PNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKC  126 (197)
T ss_dssp             SEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEE--EGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETTTTTES
T ss_pred             ccccchhhhhcCCCcccceeEEEecccCceeeCCeEc--hhhcCceecC-CCeEEecCCCCCCceeEeeeceEeccCCcc
Confidence            4588888898654     35899999999732  221  1334444555 45665433                011122


Q ss_pred             ccCCCCCCCCCCCCCCCEEeeCCCCceEeecCCCCc
Q psy9688         105 ELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFT  140 (181)
Q Consensus       105 ~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~  140 (181)
                      ..+....|+. .|..+..|.. ..+-|.|.+..+|.
T Consensus       127 tk~G~T~C~L-KCk~nE~CK~-~~~~Y~C~~~~~~~  160 (197)
T PF06247_consen  127 TKTGETKCSL-KCKENEECKL-VDGYYKCVCKEGFP  160 (197)
T ss_dssp             EEEE---------TTTEEEEE-ETTEEEEEE-TT-E
T ss_pred             cCCCccceee-ecCCCcceee-eCcEEEeecCCCCC
Confidence            2211233332 4778889988 78899999999986

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=80.15  E-value=2.1  Score=27.92  Aligned_cols=33  Identities=15%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             CCCCCCC--CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVT--LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~--~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++..|..  .+.|.+| .|+..+.-..+.|.|..||
T Consensus        41 ~i~~Cp~ey~~YClHG-~C~yI~dl~~~~CrC~~GY   75 (139)
T PHA03099         41 AIRLCGPEGDGYCLHG-DCIHARDIDGMYCRCSHGY   75 (139)
T ss_pred             ccccCChhhCCEeECC-EEEeeccCCCceeECCCCc
Confidence            3445543  3568775 8987776666899999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		3e-12
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		5e-12

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 47  TDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV-------- 98
            +PC   G CIN    ++C C   Y+G  CE D  +C SNPC ND  C+D++        
Sbjct: 12  ANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICM 71
Query: 99  --YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFE 147
             Y+G + E+    +C S+PCL++  C+D  N  F C C   FTG  CQ +
Sbjct: 72  PGYEGVHCEV-NTDECASSPCLHNGRCLDKIN-EFQCECPTGFTGHLCQVD 120

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 47  TDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV-------- 98
            +PC   G CIN    ++C C   Y+G  CE D  +C SNPC ND  C+D++        
Sbjct: 10  ANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICM 69
Query: 99  --YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ 145
             Y+G + E+    +C S+PCL++  C+D  N  F C C   FTG  CQ
Sbjct: 70  PGYEGVHCEV-NTDECASSPCLHNGRCLDKIN-EFQCECPTGFTGHLCQ 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	3e-20
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-10
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-17
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-10
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-07
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-15
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	6e-09
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	7e-04
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-14
2vh0_B	134	Activated factor XA light chain; serine protease,	2e-10
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-13
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-12
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-05
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-10
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	7e-09
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-07
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-10
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	5e-09
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	4e-08
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-07
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	8e-04
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-08
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-07
1aut_L	114	Activated protein C; serine proteinase, plasma cal	3e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-06
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	5e-06
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	3e-04
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	3e-05
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	6e-05
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	1e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	1e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	6e-04

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 80.7 bits (200), Expect = 3e-20
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 45  CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV------ 98
              +PC   G CIN    ++C C   Y+G  CE D  +C SNPC ND  C+D++      
Sbjct: 10  LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 69

Query: 99  ----YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVT 154
               Y+G + E+    +C S+PCL++  C+D  N  F C C   FTG  CQ +       
Sbjct: 70  CMPGYEGVHCEV-NTDECASSPCLHNGRCLDKIN-EFQCECPTGFTGHLCQVDLHHILDA 127

Query: 155 LNPCQNN 161
                N+
Sbjct: 128 QKMVWNH 134

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 16/97 (16%)

Query: 10  TLCESDINECETVKDVC-NYGICVNTNG-------------NGNSKVDHCLTDPCLGHGT 55
             CE D+NEC +  + C N   C++  G             +     D C + PCL +G 
Sbjct: 39  PRCEIDVNECVS--NPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGR 96

Query: 56  CINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDG 92
           C+++ + +QC C   ++G+ C+ D         +   
Sbjct: 97  CLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN 133

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 74.8 bits (184), Expect = 3e-17
 Identities = 32/174 (18%), Positives = 48/174 (27%), Gaps = 14/174 (8%)

Query: 3   FKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDR 62
            K   L   C  +    E  ++V       N   N     D C T PC   G C +    
Sbjct: 3   MKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGE 62

Query: 63  YQCLCTPRYSGNNCEKDNGD-CSSNPCLNDGVCVDEV----------YKGRYWELPEIRD 111
           Y C C   + G NCE      CS +    D  C +E           Y            
Sbjct: 63  YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK-ACIP 121

Query: 112 CTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
               PC    +     +       +     +   ++   A    +P +N    +
Sbjct: 122 TGPYPCGKQTLERRKRS-VAQATSSSGEAPDSITWKPYDAADL-DPTENPFDLL 173

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 20/141 (14%), Positives = 30/141 (21%), Gaps = 25/141 (17%)

Query: 12  CESDINECETVKDVCNYGICVNTNGN--------------GNSKVDHCLTDPCLGHGTCI 57
              D ++CET     N G C +  G                      C  D       C 
Sbjct: 38  KYKDGDQCET-SPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH 96

Query: 58  NRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV----------YKGRYWELP 107
              +   C C   Y+  +  K        PC    +   +                    
Sbjct: 97  EEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWK 156

Query: 108 EIRDCTSNPCLNDCVCVDDGN 128
                  +P  N    +D   
Sbjct: 157 PYDAADLDPTENPFDLLDFNQ 177

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 20/125 (16%), Positives = 30/125 (24%), Gaps = 31/125 (24%)

Query: 45  CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYW 104
            L   C+        +              N  KD   C ++PC N G C D +      
Sbjct: 7   HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG----- 61

Query: 105 ELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
                                     + C C E F G+ C+      C   +    +  C
Sbjct: 62  -------------------------EYTCTCLEGFEGKNCELFTRKLCSL-DNGDCDQFC 95

Query: 165 VASPG 169
                
Sbjct: 96  HEEQN 100

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 40/150 (26%)

Query: 43  DHCLTDPCLGHGTCINR--SDRYQCLCTPRYSGNNCEKD------------NGDCSSNPC 88
           D C  +PC   G C+       + C C   ++  NC                G C+ NPC
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60

Query: 89  LNDGVCVDEV-----------------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSF 131
            N G C                     + G + +   I +C   PC N  +C D    ++
Sbjct: 61  HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH-NINECEVEPCKNGGICTDLVA-NY 118

Query: 132 YCNCTEDFTGEYCQFENSAACVTLNPCQNN 161
            C C  +F G  CQ++            ++
Sbjct: 119 SCECPGEFMGRNCQYK-------GGGHHHH 141

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 51.3 bits (123), Expect = 6e-09
 Identities = 29/113 (25%), Positives = 37/113 (32%), Gaps = 31/113 (27%)

Query: 82  DCSSNPCLNDGVCVDEVYKGRY-----------------------WELPEIRDCTSNPCL 118
            C  NPC N G+C+  +  G +                        E      CT NPC 
Sbjct: 2   ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61

Query: 119 NDCVCVD------DGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV 165
           N   C        D  + + C C   F G +CQ  N   C    PC+N   C 
Sbjct: 62  NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ-HNINECEV-EPCKNGGICT 112

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 26/77 (33%)

Query: 10  TLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTP 69
             C+ +INECE                           +PC   G C +    Y C C  
Sbjct: 91  IHCQHNINECE--------------------------VEPCKNGGICTDLVANYSCECPG 124

Query: 70  RYSGNNCEKDNGDCSSN 86
            + G NC+   G    +
Sbjct: 125 EFMGRNCQYKGGGHHHH 141

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 65.4 bits (160), Expect = 3e-14
 Identities = 32/163 (19%), Positives = 42/163 (25%), Gaps = 33/163 (20%)

Query: 3   FKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDR 62
            K   L   C  +    E  ++V       N   N     D C T PC   G C +    
Sbjct: 3   MKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGE 62

Query: 63  YQCLCTPRYSGNNCEKD-NGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDC 121
           Y C C   + G NCE      CS +    D  C +E                        
Sbjct: 63  YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN---------------------- 100

Query: 122 VCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
                   S  C+C   +T      +         PC      
Sbjct: 101 --------SVVCSCARGYTLADNG-KACIPTGP-YPCGKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 31/125 (24%)

Query: 45  CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYW 104
            L   C+        +              N  KD   C ++PC N G C D +      
Sbjct: 7   HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG----- 61

Query: 105 ELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
                                     + C C E F G+ C+      C +L+    +  C
Sbjct: 62  -------------------------EYTCTCLEGFEGKNCELFTRKLC-SLDNGDCDQFC 95

Query: 165 VASPG 169
                
Sbjct: 96  HEEQN 100

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 28/162 (17%)

Query: 3   FKPISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDR 62
            +P SL   C+ +    E  +++              S  D C + PC   G+C ++   
Sbjct: 8   LRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQS 67

Query: 63  YQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCV 122
           Y C C P + G NCE    D       N G                              
Sbjct: 68  YICFCLPAFEGRNCETHKDDQLICVNENGGCEQ--------------------------Y 101

Query: 123 CVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
           C D       C C E ++       +    V   PC      
Sbjct: 102 CSDHTGTKRSCRCHEGYSLLADG-VSCTPTVE-YPCGKIPIL 141

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 24/126 (19%), Positives = 36/126 (28%), Gaps = 32/126 (25%)

Query: 42  VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKG 101
            D C  +PCL  G C +  + Y+C C   + G NCE D      N               
Sbjct: 48  GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQF--------- 98

Query: 102 RYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNN 161
                                C    +    C+CT  +     Q ++    V   PC   
Sbjct: 99  ---------------------CKTGADSKVLCSCTTGYRLAPDQ-KSCKPAVP-FPCGRV 135

Query: 162 ATCVAS 167
           +   + 
Sbjct: 136 SVSHSP 141

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVAS 167
           +   C  NPCLN  +C DD N S+ C C   F G+ C+ + +  C   N          +
Sbjct: 47  DGDQCEPNPCLNGGLCKDDIN-SYECWCQVGFEGKNCELDAT--CNIKNGRCKQFCKTGA 103

Query: 168 PGEKQITCLC 177
               ++ C C
Sbjct: 104 DS--KVLCSC 111

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 23/140 (16%)

Query: 45  CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV------ 98
              D   GH  C          C   + G  C +    C        G C          
Sbjct: 35  RPRDDFFGHYAC---DQNGNKTCMEGWMGPECNRA--ICRQGCSPKHGSCKLPGDCRCQY 89

Query: 99  -YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNP 157
            ++G Y +      C  +P     +C +     + C C  ++ G+ C  ++   C T  P
Sbjct: 90  GWQGLYCD-----KCIPHPGCVHGICNE----PWQCLCETNWGGQLCD-KDLNYCGTHQP 139

Query: 158 CQNNATCVASPGEKQITCLC 177
           C N  TC  + G  +  C C
Sbjct: 140 CLNGGTCS-NTGPDKYQCSC 158

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 42  VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD----- 96
              C       HG+C        C C   + G  C+     C  +P    G+C +     
Sbjct: 65  RAICRQGCSPKHGSCK---LPGDCRCQYGWQGLYCD----KCIPHPGCVHGICNEPWQCL 117

Query: 97  --EVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ 145
               + G+  +       T  PCLN   C + G   + C+C E ++G  C+
Sbjct: 118 CETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 21/126 (16%), Positives = 28/126 (22%), Gaps = 21/126 (16%)

Query: 45  CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYK---- 100
             +     HG+   R       C   Y G  C K    C            D+       
Sbjct: 2   RGSHHHHHHGSIEGR---SAVTCDDYYYGFGCNK---FCRPRDDFFGHYACDQNGNKTCM 55

Query: 101 -GRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQ 159
            G          C          C   G+    C C   + G YC           +P  
Sbjct: 56  EGWMGPECNRAICRQGCSPKHGSCKLPGD----CRCQYGWQGLYCDKCIP------HPGC 105

Query: 160 NNATCV 165
            +  C 
Sbjct: 106 VHGICN 111

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 29/128 (22%)

Query: 43  DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGR 102
             C++ PCL +G+C +    Y C C+P Y G+NCE    +C                   
Sbjct: 6   SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT-------------- 51

Query: 103 YWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNA 162
                       + C + C+    G  S+ C+C + +       +             + 
Sbjct: 52  ------------DGCQHFCL---PGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96

Query: 163 TCVASPGE 170
                  +
Sbjct: 97  KRAPDLQD 104

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 26/126 (20%)

Query: 49  PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV-------YKG 101
            C   G C    +R  C C   + G +CEK      +  C+N G+CV          + G
Sbjct: 154 GCRNGGFCN---ERRICECPDGFHGPHCEKA---LCTPRCMNGGLCVTPGFCICPPGFYG 207

Query: 102 RYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNN 161
              +    +   S  C N   C   G     C C     GE C+           PC+N 
Sbjct: 208 VNCD----KANCSTTCFNGGTCFYPGK----CICPPGLEGEQCEI-----SKCPQPCRNG 254

Query: 162 ATCVAS 167
             C+  
Sbjct: 255 GKCIGK 260

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 23/124 (18%)

Query: 45  CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV------ 98
             +  C   GTC       +C+C P   G  CE         PC N G C+ +       
Sbjct: 214 NCSTTCFNGGTCFYP---GKCICPPGLEGEQCEI---SKCPQPCRNGGKCIGKSKCKCSK 267

Query: 99  -YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNP 157
            Y+G        +      C     C +       C C E + G +C     A+   +  
Sbjct: 268 GYQGDLCS----KPVCEPGCGAHGTCHEPNK----CQCQEGWHGRHCNKRYEASL--IGT 317

Query: 158 CQNN 161
             ++
Sbjct: 318 KHHH 321

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 23/130 (17%)

Query: 45  CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD-------E 97
            +    +      +  +              C++         C N G C +       +
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQ---AECPGGCRNGGFCNERRICECPD 171

Query: 98  VYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNP 157
            + G + E    +   +  C+N  +CV  G     C C   F G  C             
Sbjct: 172 GFHGPHCE----KALCTPRCMNGGLCVTPGF----CICPPGFYGVNCDK-----ANCSTT 218

Query: 158 CQNNATCVAS 167
           C N  TC   
Sbjct: 219 CFNGGTCFYP 228

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)

Query: 49  PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDG 92
            C  HGTC    +  +C C   + G +C K           +  
Sbjct: 282 GCGAHGTCH---EPNKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 13/102 (12%)

Query: 42  VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEK--DNGDCSSNPCLNDGVCVDEV- 98
           ++H     C GHGTCI+    + C C   + G  C++     +CS +       C++EV 
Sbjct: 14  LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVG 73

Query: 99  ---------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSF 131
                    YK     L +       PC      ++      
Sbjct: 74  WRRCSCAPGYKLGDDLL-QCHPAVKFPCGRPWKRMEKKRSHL 114

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 12  CESDINECETVKDVCNYGICVNTNGN---------------GNSKVDHCLTDPCLGHGTC 56
           C     E       C +G C++  G+                     +C  D       C
Sbjct: 9   CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC 68

Query: 57  INRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDE 97
           +      +C C P Y   +           PC      +++
Sbjct: 69  LEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEK 109

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 105 ELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATC 164
            +  +    ++ C     C+D    SF C+C   + G +CQ E S    +L+       C
Sbjct: 10  LVLPLEHPCASLCCGHGTCIDGIG-SFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC 68

Query: 165 VASPGEKQITC 175
           +   G ++ +C
Sbjct: 69  LEEVGWRRCSC 79

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 13/143 (9%)

Query: 6   ISLSTLCESDINECETVKDVCNYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQC 65
           I    +  S     ++ +   +     +  G+     +      CL  G C    D+  C
Sbjct: 154 IRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVC 213

Query: 66  LCT-PRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEI----RDCTSNPCL-- 118
            C+   + G +C +   +  +    ++  C D           EI    +    N  +  
Sbjct: 214 DCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLH 273

Query: 119 ----NDCVCVD--DGNLSFYCNC 135
                D V +   +G +S   N 
Sbjct: 274 TGKSADYVNLALKNGAVSLVINL 296

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 40.5 bits (96), Expect = 5e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
           D C ++PCL  G+C +  + Y+C C   + G NCE
Sbjct: 3  GDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 35.9 bits (84), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF 146
           +   C SNPCLN   C DD N S+ C C   F G+ C+ 
Sbjct: 2   DGDQCESNPCLNGGSCKDDIN-SYECWCPFGFEGKNCEL 39

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 43  DHCLTDPCLGHGTCINRSDRYQCLCT-PRYSGNNCEKDNGDCSSNPC 88
             C  D C   G C+ + D + C C+   +SG  C         +  
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 15/101 (14%)

Query: 49  PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVD-----EVYKGRY 103
            C G G C        C C   Y    C++       +PC     C +     +   G+ 
Sbjct: 567 ECSGRGRCRC----NVCECHSGYQLPLCQE--CPGCPSPCGKYISCAECLKFEKGPFGKN 620

Query: 104 WELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYC 144
                     SN  +    C +  +      C   +T E  
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERDS----EGCWVAYTLEQQ 657

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 55  TCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRY 103
             +  +    C C    +          CS   C N G C   +Y   +
Sbjct: 24  PVLRSNRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNGGTCQQALYFSDF 71

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 28/154 (18%), Positives = 42/154 (27%), Gaps = 24/154 (15%)

Query: 45  CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD-----NGDCSSNPCLNDGVCVDEV- 98
            L   C+ +G C   +   +C+C P + G  CEK       G      C     C   V 
Sbjct: 200 HLCTACMNNGVCHEDT--GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVF 257

Query: 99  -------------YKGRYWELPEIRDCTSNPCLNDCVCVDDG--NLSFYCNCTEDFTGEY 143
                        +KG               C   C C +    +    C C+  + G  
Sbjct: 258 CLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQ 317

Query: 144 CQFENSAACVTLNPCQNNATCVASPGEKQITCLC 177
           C+ E      T            + G+    C  
Sbjct: 318 CEREGIPRM-TPKIVDLPDHIEVNSGKFNPICKA 350

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 20/155 (12%), Positives = 34/155 (21%), Gaps = 21/155 (13%)

Query: 45  CLTDPCLGHGTCINR----SDRYQCLCTPRYSGNNCEKDNGDCSSNP-------CLNDGV 93
              + C G   C +      D Y C C   + G  C +        P       C N  +
Sbjct: 241 TCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEM 300

Query: 94  CVDEV-------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF 146
           C           ++G   E   I   T            +       N     +G     
Sbjct: 301 CDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSG---KFNPICKASGWPLPT 357

Query: 147 ENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV 181
                 V  +    +           +    +  +
Sbjct: 358 NEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRI 392

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.83
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.8
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.78
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.72
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.7
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.62
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.59
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.54
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.53
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.48
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.44
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.42
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.36
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.33
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.32
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.29
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.26
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.25
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.22
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.2
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.19
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.18
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.17
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.17
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.14
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.11
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.1
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.1
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.09
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.07
2vh0_B	134	Activated factor XA light chain; serine protease,	99.07
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.06
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.05
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.05
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.02
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.02
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.0
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.98
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.98
2vh0_B	134	Activated factor XA light chain; serine protease,	98.96
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.92
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.89
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.81
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.79
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.78
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.73
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.67
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.66
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.63
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.56
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.52
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.5
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.49
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.49
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.46
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.34
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.32
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.32
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.28
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.26
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.26
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.21
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.13
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.13
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.11
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.11
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.08
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.9
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.81
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	97.76
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.63
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.54
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.4
1ob1_C	99	Major merozoite surface protein; immune system, im	97.35
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.32
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.24
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.21
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.17
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.15
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.1
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.1
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.09
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.04
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	97.0
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.98
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	96.96
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.95
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.85
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.83
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.7
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.66
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.63
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.49
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	96.35
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.34
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	96.29
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	96.23
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.18
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.14
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.04
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.92
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	95.86
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	95.75
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	95.72
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	95.18
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	95.18
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	95.18
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.0
1ob1_C	99	Major merozoite surface protein; immune system, im	94.94
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	94.94
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	94.91
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	94.88
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	94.87
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	94.81
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	94.58
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	93.95
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	93.92
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	93.85
1szb_A	170	Mannose binding lectin-associated serine protease-	93.43
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	92.97
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	92.85
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	92.84
2wph_E	59	Coagulation factor IXA light chain; serine proteas	92.5
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	92.14
2wph_E	59	Coagulation factor IXA light chain; serine proteas	92.05
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	91.91
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	91.7
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	91.49
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	91.23
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	91.12
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	90.07
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	89.86
1szb_A	170	Mannose binding lectin-associated serine protease-	89.72
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	89.34
1nzi_A	159	Complement C1S component; calcium, innate immunity	88.36

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.83  E-value=6.5e-20  Score=121.58  Aligned_cols=108  Identities=36%  Similarity=0.899  Sum_probs=67.6

Q ss_pred             ccCcCCC--CCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCC
Q psy9688          40 SKVDHCL--TDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPC  117 (181)
Q Consensus        40 ~~~~~c~--~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c  117 (181)
                      .++++|.  ..+|.++++|++..+.|.|.|++||+|..|+.++++|...+|.+.+                         
T Consensus         3 ~dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~-------------------------   57 (135)
T 2vj3_A            3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDA-------------------------   57 (135)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTTCCCCSSC-------------------------
T ss_pred             cccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCCCCCCCCCC-------------------------
Confidence            4677886  5788888899988888999999999998887666666555554444                         


Q ss_pred             CCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         118 LNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       118 ~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                          +|++ ..+.|+|.|++||+|..|+. ++++|.. ++|.++++|+++.++  |.|.|++||
T Consensus        58 ----~C~~-~~g~~~C~C~~G~~G~~C~~-~~~~C~~-~~C~~~g~C~~~~g~--~~C~C~~G~  112 (135)
T 2vj3_A           58 ----TCLD-QIGEFQCICMPGYEGVHCEV-NTDECAS-SPCLHNGRCLDKINE--FQCECPTGF  112 (135)
T ss_dssp             ----EEEE-CSSCEEEECCTTEESSSSCE-ECCTTTT-CCSTTTCEEEECSSC--EEEECCTTE
T ss_pred             ----EEeC-CCCCceeeCCCCCcCCccee-cCCcccC-CCcCCCCEeECCCCC--eEEECCCCC
Confidence                4444 44445555555555555543 3444444 445555555555444  445555544

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.80  E-value=5.3e-19  Score=118.38  Aligned_cols=117  Identities=29%  Similarity=0.716  Sum_probs=92.2

Q ss_pred             cCCCCCCCCCCCEEecCC--CCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRS--DRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLND  120 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~--~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~  120 (181)
                      |+|.+.||.++++|++..  +.|.|.|++||+|..|+ .+.++....              ..+.  +++.|...+|.++
T Consensus         1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~-~~~~~~~~~--------------~~c~--~~~~C~~~~C~~~   63 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCS-SVVEVASDE--------------EEPT--SAGPCTPNPCHNG   63 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTC-SCCCCTTTT--------------TSCC--CCCTTSSCCCCTT
T ss_pred             CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCc-cCccccccc--------------cccc--cCCcCCCCCCCCC
Confidence            468889999999999865  57999999999999998 333332211              0111  5678888889999


Q ss_pred             CEEe-------eCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         121 CVCV-------DDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       121 ~~C~-------~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++|+       + ..+.|+|.|++||.|..|+. ++++|.. ++|.++++|+++.++  |.|.|++||
T Consensus        64 g~C~~~~~~~~~-~~~~~~C~C~~G~~G~~C~~-~i~~C~~-~~C~~~~~C~~~~g~--~~C~C~~G~  126 (143)
T 4d90_A           64 GTCEISEAYRGD-TFIGYVCKCPRGFNGIHCQH-NINECEV-EPCKNGGICTDLVAN--YSCECPGEF  126 (143)
T ss_dssp             CEEEECCCEETT-EECCEEEECCTTEESTTSCE-ECCTTTT-CCSCTTCEEEEETTE--EEEECCTTC
T ss_pred             CEecCCCccccC-CCCCeEeECcCCCcCCCccc-CCCcCCC-CCCCCCCEeECCCCC--eEeECCCCC
Confidence            9998       4 45789999999999999976 7899987 899999999999998  899999998

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.78  E-value=1.9e-18  Score=114.52  Aligned_cols=111  Identities=34%  Similarity=0.890  Sum_probs=90.1

Q ss_pred             CCCCcccccCCCCCC-CCceeecCCCCc------------c-ccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          12 CESDINECETVKDVC-NYGICVNTNGNG------------N-SKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        12 C~~~~~~c~~~~~~C-~~~~C~~~~~~~------------~-~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      |+ |+++|....++| .++.|+++.++|            + .++++|...+|.++++|++..+.|.|.|++||+|..|+
T Consensus         2 c~-dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~   80 (135)
T 2vj3_A            2 AQ-DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE   80 (135)
T ss_dssp             -C-CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSC
T ss_pred             Cc-ccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCcce
Confidence            54 899998767899 899999998877            2 47888988999999999999999999999999999987


Q ss_pred             CCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCC
Q psy9688          78 KDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVT  154 (181)
Q Consensus        78 ~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~  154 (181)
                      .++++|                             ...+|.++++|++ ..+.|+|.|++||+|..|+. ++++|..
T Consensus        81 ~~~~~C-----------------------------~~~~C~~~g~C~~-~~g~~~C~C~~G~~G~~C~~-~i~~C~~  126 (135)
T 2vj3_A           81 VNTDEC-----------------------------ASSPCLHNGRCLD-KINEFQCECPTGFTGHLCQV-DLHHILD  126 (135)
T ss_dssp             EECCTT-----------------------------TTCCSTTTCEEEE-CSSCEEEECCTTEESSSSCE-ECC----
T ss_pred             ecCCcc-----------------------------cCCCcCCCCEeEC-CCCCeEEECCCCCcCCccCc-cCccccC
Confidence            555544                             3445666778888 78899999999999999986 7888876

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.72  E-value=1.5e-18  Score=121.06  Aligned_cols=127  Identities=21%  Similarity=0.560  Sum_probs=82.5

Q ss_pred             CCCCCCCCEEecCCCCeeEeCCCCCcCC---CCCCCCCCCC----CCCCCCCcEEeeCC---------------eecccc
Q psy9688          47 TDPCLGHGTCINRSDRYQCLCTPRYSGN---NCEKDNGDCS----SNPCLNDGVCVDEV---------------YKGRYW  104 (181)
Q Consensus        47 ~~~c~~~~~C~~~~~~~~C~c~~g~~g~---~c~~~~~~c~----~~~c~~~~~C~~~~---------------~~g~~c  104 (181)
                      +.||.+ ++|++..+.|+|.|++||+|.   .|+ ++++|.    ..+|.+.+.|++..               |.+..+
T Consensus        10 ~~pC~n-g~C~~~~g~~~C~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~   87 (186)
T 1z1y_A           10 DTICXN-GQLVQMSNHFXCMCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXED   87 (186)
T ss_dssp             TCCCBT-EEEEECSSCEEEEECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETT
T ss_pred             CCCCCC-CEeECCCCCeEeECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCC
Confidence            344543 355555555555555555543   454 455554    34455545554432               222222


Q ss_pred             ccCCCCCCCCCCCCCCCEEe----eCCCCceEeecCCCCcc-----CCccccCCCCCCCCCCC-CCCCEEeeCCCCcceE
Q psy9688         105 ELPEIRDCTSNPCLNDCVCV----DDGNLSFYCNCTEDFTG-----EYCQFENSAACVTLNPC-QNNATCVASPGEKQIT  174 (181)
Q Consensus       105 ~~~~~~~c~~~~c~~~~~C~----~~~~~~~~C~C~~g~~g-----~~c~~~~~~~c~~~~~C-~~~~~C~~~~g~~~~~  174 (181)
                      .. .+++|...+|.++++|+    + ..++|+|.|++||+|     ..|+.+++++|..  +| .++++|+++.++  |.
T Consensus        88 ~C-~~d~C~~~~C~~~g~C~~~~~~-~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~--~C~~~~~~C~n~~g~--y~  161 (186)
T 1z1y_A           88 TC-VLDVCQYXNCGESGECIVEYLS-EIQSAGCSCAIGXVPNPEDEXXCTXTGETACQL--XCNTDNEVCXNVEGV--YX  161 (186)
T ss_dssp             EE-EEGGGTTCCCCTTEEEEEEEET-TEEEEEEEECTEEEEETTTTTEEEEEECCCCCC--CCCTTTEEEEEETTE--EE
T ss_pred             CC-CCCcCcCCCCCCCCEEeeCCcC-CCCCceEECCCCCcccCCCCCcceEcCCCcccc--cccccCcceecCCCC--ee
Confidence            22 24666666787778887    6 778899999999998     7787423478854  89 889999999998  89


Q ss_pred             EecCCCC
Q psy9688         175 CLCLKEV  181 (181)
Q Consensus       175 C~C~~g~  181 (181)
                      |.|++||
T Consensus       162 C~C~~G~  168 (186)
T 1z1y_A          162 CQCMEGF  168 (186)
T ss_dssp             EEECTTC
T ss_pred             eECCCCC
Confidence            9999998

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.70  E-value=1.8e-21  Score=140.48  Aligned_cols=168  Identities=11%  Similarity=0.025  Sum_probs=124.8

Q ss_pred             CCCCCcccCCCCCCcccccC----CCCCC-CCceeecCCCCccccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCC
Q psy9688           2 YFKPISLSTLCESDINECET----VKDVC-NYGICVNTNGNGNSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNC   76 (181)
Q Consensus         2 ~C~~g~~g~~C~~~~~~c~~----~~~~C-~~~~C~~~~~~~~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c   76 (181)
                      .|++||+|..|+.++++|..    ...+| +++.|+  .|..+...++|.+.||.++++|++...+|+|.|+.||+|..|
T Consensus        56 ~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~--~G~~c~~~~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~C  133 (267)
T 4fbr_A           56 EGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWV--LGARDKQNIVAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVT  133 (267)
T ss_dssp             SCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEE--CCCCSSCCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEEC
T ss_pred             eCCCCcccccccccccccccccCcCCCcccCCCeee--ccCccccccccCCCCCCCCCEEecCCccEEeeCCCCccccCC
Confidence            48899999999999998431    04455 555554  244466667898999999999999999999999999999999


Q ss_pred             CCCCCCC------CCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCCC
Q psy9688          77 EKDNGDC------SSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSA  150 (181)
Q Consensus        77 ~~~~~~c------~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~  150 (181)
                      +.++++|      ...+|.+.+.|+    .|..|..  ...+...+|.++++|++ ...+|+|.|++||+|..|+. +++
T Consensus       134 e~~~d~C~n~~~c~s~pC~ngg~c~----~G~~c~~--~i~c~~~~c~ngg~C~d-g~~~y~C~Cp~Gf~G~~c~~-~i~  205 (267)
T 4fbr_A          134 DGDTYSVENQWGGSAAPWHSGGVWV----LGTRGKQ--NVINVDAKSNDGGKTLS-GTMTYNGEGPIGFRGTLTSP-DTY  205 (267)
T ss_dssp             CCCEEEEEEECSSTTSCCEEEEEEE----CCSSTTS--CEEEEEEECSSTTSEEE-EEEEETTSCCEEEEEEEEET-TEE
T ss_pred             CCCcccccccCCcCCccccCCccee----ccccccc--ccccCCCCCCCCCEeeC-CCCCeEEeCCCCcccccccc-ccc
Confidence            9888874      445666666665    3555552  23344568999999999 88999999999999988875 444


Q ss_pred             C------C---------------CC-C------CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         151 A------C---------------VT-L------NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       151 ~------c---------------~~-~------~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +      +               .+ .      .+|.++++|++...+  |.|.|+.||
T Consensus       206 ec~~~~~c~~~~c~~gG~~~~~C~~g~n~~~c~~~c~ngGtC~dg~~s--y~CeCp~GF  262 (267)
T 4fbr_A          206 TVENQWGGSTAPWNPGGFWMIGARNGQNVVALNVASSDGGKTLAGTMI--YNGEGPIGF  262 (267)
T ss_dssp             EEEEECSCTTSCCEEEEEEECCCCTTCCEEEEEEECSSTTSEEEEEEE--ETTSCCEEE
T ss_pred             eeccCCCccCCcccCCCeEEEecCCCCccccCCcCCCCCCEeeCCCcc--eeecCCCCc
Confidence            3      1               11 0      156777888876655  778888876

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.62  E-value=1.4e-15  Score=122.41  Aligned_cols=110  Identities=26%  Similarity=0.702  Sum_probs=86.7

Q ss_pred             cCcCCCCCCCCCCCEEecCCC-CeeE-eCCCCCcC--CCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCC
Q psy9688          41 KVDHCLTDPCLGHGTCINRSD-RYQC-LCTPRYSG--NNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNP  116 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~~~~~-~~~C-~c~~g~~g--~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~  116 (181)
                      ++++|...||.++++|++..+ +|.| .|++||+|  ..|+ ++++|...+                           ..
T Consensus         2 DIDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p---------------------------~~   53 (634)
T 1yo8_A            2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVP---------------------------DI   53 (634)
T ss_dssp             --CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTTTSC---------------------------CC
T ss_pred             cccccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-ccccccCCC---------------------------Cc
Confidence            578898899999999999875 5999 99999997  6776 666664322                           11


Q ss_pred             CCCCC---EEeeCCCCceEee-cCCCCccCCcc-------------ccCCCCCCC-CCCCCCCCEEeeCC----CCcceE
Q psy9688         117 CLNDC---VCVDDGNLSFYCN-CTEDFTGEYCQ-------------FENSAACVT-LNPCQNNATCVASP----GEKQIT  174 (181)
Q Consensus       117 c~~~~---~C~~~~~~~~~C~-C~~g~~g~~c~-------------~~~~~~c~~-~~~C~~~~~C~~~~----g~~~~~  174 (181)
                      |..++   +|++ ..++|+|. |++||+|..++             .+++++|.. .++|.++++|+++.    ++  |.
T Consensus        54 C~~gg~~~~CvN-t~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~Gs--Y~  130 (634)
T 1yo8_A           54 CFSTSKVPRCVN-TQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPM--YK  130 (634)
T ss_dssp             SCCCSSSCCEEE-CSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSS--EE
T ss_pred             ccCCccccceee-ccCceecccCCCCcccCccccccccccccCCCcccccccccCCCcccccCccccccccccccc--ee
Confidence            55556   7888 88899998 99999987754             127889976 46899999999998    77  89


Q ss_pred             EecCCCC
Q psy9688         175 CLCLKEV  181 (181)
Q Consensus       175 C~C~~g~  181 (181)
                      |.|++||
T Consensus       131 C~C~~Gy  137 (634)
T 1yo8_A          131 CECQTGY  137 (634)
T ss_dssp             EEECTTE
T ss_pred             eeccCCc
Confidence            9999997

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.59  E-value=8.6e-16  Score=102.67  Aligned_cols=106  Identities=22%  Similarity=0.550  Sum_probs=80.0

Q ss_pred             CCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCC---CCCCCCEE
Q psy9688          47 TDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSN---PCLNDCVC  123 (181)
Q Consensus        47 ~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~---~c~~~~~C  123 (181)
                      +.+|.++++|++.   |.|.|++||+|.. . .+ .      ..          +..|.  ++++|...   +|..+++|
T Consensus         6 ~~~C~~~~~C~~~---~~C~C~~G~~g~~-~-~~-~------~~----------~~~C~--dideC~~~~~~~C~~~~~C   61 (143)
T 2bou_A            6 ARWCPQDSSCVNA---TACRCNPGFSSFS-E-II-T------TP----------METCD--DINECATLSKVSCGKFSDC   61 (143)
T ss_dssp             CTTCCTTEEESSS---SCEEECTTEECSS-S-SB-C------ST----------TCCCE--ECCGGGC----CCCTTEEE
T ss_pred             cCcCCCCCEEcCC---CEEeCCCCCcCcc-c-cc-c------CC----------CCcCC--ccccccCCCCCCCCCCCEE
Confidence            4689899999864   8999999999753 1 00 0      00          11111  45666543   78888899


Q ss_pred             eeCCCCceEeecCCCCccC------------CccccCCCCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         124 VDDGNLSFYCNCTEDFTGE------------YCQFENSAACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       124 ~~~~~~~~~C~C~~g~~g~------------~c~~~~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++ ..++|+|.|++||++.            .|+  ++++|.. .++|.++++|+++.++  |.|.|++||
T Consensus        62 ~n-~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~--dideC~~~~~~C~~~~~C~n~~g~--y~C~C~~Gy  127 (143)
T 2bou_A           62 WN-TEGSYDCVCSPGYEPVSGAKTFKNESENTCQ--DVDECSSGQHQCDSSTVCFNTVGS--YSCRCRPGW  127 (143)
T ss_dssp             EE-CSSCEEEEECTTEEETTCCSCBSSGGGCCEE--ECCHHHHTCCCCCTTSEEEECSSC--EEEECCSSS
T ss_pred             Ec-CCCCeEeECCCCcccCcCccccccCCCCCcC--CccCccCcCCCCCCCCEEECCCCC--EEeeCCCCc
Confidence            99 8899999999999876            555  7888874 4789999999999998  889999997

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.54  E-value=1.1e-15  Score=98.84  Aligned_cols=103  Identities=23%  Similarity=0.627  Sum_probs=79.1

Q ss_pred             ccCcCCCCCCCCCCCEEecC-CCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCC
Q psy9688          40 SKVDHCLTDPCLGHGTCINR-SDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCL  118 (181)
Q Consensus        40 ~~~~~c~~~~c~~~~~C~~~-~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~  118 (181)
                      .++|+|...||.+  +|++. .++|.|.|++||.|..+  ++++|.                         +.|...+|.
T Consensus         2 ~dideC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~--~~~~C~-------------------------~~C~~~~C~   52 (118)
T 1dx5_I            2 EPVDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPH--EPHRCQ-------------------------MFCNQTACP   52 (118)
T ss_dssp             CCCCGGGGCCCSS--EEEECSSSCEEEECCTTEEEETT--EEEEEE-------------------------ECCCSSEEE
T ss_pred             CccccCCCCCCCC--CCCCCCCCCEEeECCCCccccCC--CCCccc-------------------------cccCCCCCC
Confidence            3678888888974  99999 89999999999997643  222231                         113333444


Q ss_pred             CCCEEeeCCCCceEeecCCCCc---cCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         119 NDCVCVDDGNLSFYCNCTEDFT---GEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       119 ~~~~C~~~~~~~~~C~C~~g~~---g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                        ++|++ . +.|+|.|++||+   |..|.  ++++|...++|  +++|+++.++  |.|.|++||
T Consensus        53 --~~C~~-~-~~y~C~C~~Gy~~~~g~~C~--dideC~~~~~C--~~~C~n~~g~--y~C~C~~G~  108 (118)
T 1dx5_I           53 --ADCDP-N-TQASCECPEGYILDDGFICT--DIDECENGGFC--SGVCHNLPGT--FECICGPDS  108 (118)
T ss_dssp             --CEECT-T-STTCEECCTTEEEETTTEEE--ECCHHHHCSSC--SSEEEECSSS--EEEEECSSS
T ss_pred             --CcccC-C-CCeEeECCCCccCCCCCccc--cccccCCCCCC--cCeEEeCCCC--EEEECCCCC
Confidence              47875 3 789999999999   88886  88998654688  6899999998  999999997

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.53  E-value=6e-15  Score=102.77  Aligned_cols=121  Identities=21%  Similarity=0.490  Sum_probs=94.3

Q ss_pred             CCCCCCceeecCCCCc---------------cccCcCCC----CCCCCCCCEEecCC-----CCeeEeCCCCCcCCCCCC
Q psy9688          23 KDVCNYGICVNTNGNG---------------NSKVDHCL----TDPCLGHGTCINRS-----DRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        23 ~~~C~~~~C~~~~~~~---------------~~~~~~c~----~~~c~~~~~C~~~~-----~~~~C~c~~g~~g~~c~~   78 (181)
                      .++|.+++|+++.++|               +.++++|.    ..+|.++++|++..     +.|.|.|++||+|..++-
T Consensus        10 ~~pC~ng~C~~~~g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~C   89 (186)
T 1z1y_A           10 DTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTC   89 (186)
T ss_dssp             TCCCBTEEEEECSSCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETTEE
T ss_pred             CCCCCCCEeECCCCCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCCCC
Confidence            5677345898888776               45778887    67798889999988     789999999999775443


Q ss_pred             CCCCCCCCCCCCCcEEe----eCC----------eec-----cccccCCCCCCCCCCC-CCCCEEeeCCCCceEeecCCC
Q psy9688          79 DNGDCSSNPCLNDGVCV----DEV----------YKG-----RYWELPEIRDCTSNPC-LNDCVCVDDGNLSFYCNCTED  138 (181)
Q Consensus        79 ~~~~c~~~~c~~~~~C~----~~~----------~~g-----~~c~~~~~~~c~~~~c-~~~~~C~~~~~~~~~C~C~~g  138 (181)
                      .+++|...+|.+.+.|+    +..          |.+     ..|....+++|. .+| ..+++|++ ..++|+|.|++|
T Consensus        90 ~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~-~~C~~~~~~C~n-~~g~y~C~C~~G  167 (186)
T 1z1y_A           90 VLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ-LXCNTDNEVCXN-VEGVYXCQCMEG  167 (186)
T ss_dssp             EEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC-CCCCTTTEEEEE-ETTEEEEEECTT
T ss_pred             CCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc-ccccccCcceec-CCCCeeeECCCC
Confidence            46788888898888888    443          555     667632247787 489 88899999 899999999999


Q ss_pred             CccCCcc
Q psy9688         139 FTGEYCQ  145 (181)
Q Consensus       139 ~~g~~c~  145 (181)
                      |.|..+.
T Consensus       168 ~~g~~~~  174 (186)
T 1z1y_A          168 FTFDXEX  174 (186)
T ss_dssp             CEEETTT
T ss_pred             CccCccc
Confidence            9987775

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.4e-13  Score=91.80  Aligned_cols=76  Identities=30%  Similarity=0.859  Sum_probs=62.6

Q ss_pred             cCcCCCCCCCCCCCEEe-------cCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCC
Q psy9688          41 KVDHCLTDPCLGHGTCI-------NRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCT  113 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~-------~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~  113 (181)
                      ++++|.+.+|.++++|+       +..+.|.|.|++||.|..|+.++++|                             .
T Consensus        51 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~~~i~~C-----------------------------~  101 (143)
T 4d90_A           51 SAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINEC-----------------------------E  101 (143)
T ss_dssp             CCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSCEECCTT-----------------------------T
T ss_pred             cCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCcccCCCcC-----------------------------C
Confidence            45778888999999999       56678999999999999997556555                             3


Q ss_pred             CCCCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         114 SNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       114 ~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ..+|.++++|++ ..++|+|.|++||+|+.++.
T Consensus       102 ~~~C~~~~~C~~-~~g~~~C~C~~G~~G~~c~~  133 (143)
T 4d90_A          102 VEPCKNGGICTD-LVANYSCECPGEFMGRNCQY  133 (143)
T ss_dssp             TCCSCTTCEEEE-ETTEEEEECCTTCBSTTSCB
T ss_pred             CCCCCCCCEeEC-CCCCeEeECCCCCccCCcee
Confidence            445666778888 78899999999999999874

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.44  E-value=3.7e-15  Score=101.59  Aligned_cols=130  Identities=23%  Similarity=0.585  Sum_probs=86.0

Q ss_pred             cCcCCC-CCCCCCCCEEecCCCCeeEeCCCCCc----CCCCCCCCCC--CCCC--CC--CCCcEEeeCC---eecccccc
Q psy9688          41 KVDHCL-TDPCLGHGTCINRSDRYQCLCTPRYS----GNNCEKDNGD--CSSN--PC--LNDGVCVDEV---YKGRYWEL  106 (181)
Q Consensus        41 ~~~~c~-~~~c~~~~~C~~~~~~~~C~c~~g~~----g~~c~~~~~~--c~~~--~c--~~~~~C~~~~---~~g~~c~~  106 (181)
                      ++++|. +.+|. +++|++..++|.|.|++||+    |..|+ ++++  |...  ++  ...+.|++..   +.+..|..
T Consensus         2 dideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C   79 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC   79 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHHT
T ss_pred             ccccCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeC
Confidence            678886 47886 68999999999999999998    88887 6665  6432  22  2355666543   11344443


Q ss_pred             CCCCCCCCCCCCCCCEEeeCCCCceEeecCC--CCccC----CccccCCCCCCC-CCCCCCCCEEeeCCCCcceEEecCC
Q psy9688         107 PEIRDCTSNPCLNDCVCVDDGNLSFYCNCTE--DFTGE----YCQFENSAACVT-LNPCQNNATCVASPGEKQITCLCLK  179 (181)
Q Consensus       107 ~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~--g~~g~----~c~~~~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~  179 (181)
                      +. ......+|.   .|.....+.|.|.|++  ||++.    .|.  +|++|.. +++|.+ ++|+++.++  |.|.|++
T Consensus        80 ~~-G~~~~~~C~---~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~--dideC~~~~~~C~~-g~C~n~~gs--y~C~C~~  150 (162)
T 1uzk_A           80 SL-GKAWGTPCE---MCPAVNTSEYKILCPGGEGFRPNPITVILE--DIDECQELPGLCQG-GKCINTFGS--FQCRCPT  150 (162)
T ss_dssp             TT-CCEETTTTE---ECCCTTSHHHHHHCTTCTTEEECTTTCCEE--ECCHHHHCGGGGBT-SEEEECSSC--EEEECCT
T ss_pred             CC-CCCcCCCcc---cCCCCCCCCceeECCCCCCcccCCCCCccC--ccccccCCCCCcCC-CEeEcCCCC--EEeeCCC
Confidence            21 111122343   3543245678999987  88764    344  8999975 356975 699999999  9999999


Q ss_pred             CC
Q psy9688         180 EV  181 (181)
Q Consensus       180 g~  181 (181)
                      ||
T Consensus       151 Gy  152 (162)
T 1uzk_A          151 GY  152 (162)
T ss_dssp             TC
T ss_pred             Cc
Confidence            98

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.42  E-value=8.7e-17  Score=116.16  Aligned_cols=124  Identities=11%  Similarity=0.029  Sum_probs=99.3

Q ss_pred             CCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCC------CCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCC
Q psy9688          48 DPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGD------CSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDC  121 (181)
Q Consensus        48 ~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~------c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~  121 (181)
                      .+|.++++|++..++|+|.|++||+|..|+..+++      +...+|.++++|+    .|..|.  ..++|++.||.+.+
T Consensus        38 ~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~----~G~~c~--~~~eC~s~pC~ngG  111 (267)
T 4fbr_A           38 IKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWV----LGARDK--QNIVAVSIKSNDGG  111 (267)
T ss_dssp             EECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEE----CCCCSS--CCEEEEEEECSSTT
T ss_pred             CCcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCcccCCCeee----ccCccc--cccccCCCCCCCCC
Confidence            36889999999999999999999999999988888      6667777777774    466676  45688888999999


Q ss_pred             EEeeCCCCceEeecCCCCccCCccccCCCC------CCC----------------------CCCCCCCCEEeeCCCCcce
Q psy9688         122 VCVDDGNLSFYCNCTEDFTGEYCQFENSAA------CVT----------------------LNPCQNNATCVASPGEKQI  173 (181)
Q Consensus       122 ~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~------c~~----------------------~~~C~~~~~C~~~~g~~~~  173 (181)
                      +|++ ...+|+|.|++||+|..|+. ++++      |..                      ..+|.++++|++...+  |
T Consensus       112 ~C~~-~~~sy~C~C~~Gf~G~~Ce~-~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ngg~C~dg~~~--y  187 (267)
T 4fbr_A          112 KTLT-GTTTYNGEGPIGFKSEVTDG-DTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGTMT--Y  187 (267)
T ss_dssp             SEEE-EEEEETTSCCEEEEEEECCC-CEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECSSTTSEEEEEEE--E
T ss_pred             EEec-CCccEEeeCCCCccccCCCC-CcccccccCCcCCccccCCcceecccccccccccCCCCCCCCCEeeCCCCC--e
Confidence            9999 88899999999999888765 3332      111                      0257778888877766  7


Q ss_pred             EEecCCCC
Q psy9688         174 TCLCLKEV  181 (181)
Q Consensus       174 ~C~C~~g~  181 (181)
                      +|.|++||
T Consensus       188 ~C~Cp~Gf  195 (267)
T 4fbr_A          188 NGEGPIGF  195 (267)
T ss_dssp             TTSCCEEE
T ss_pred             EEeCCCCc
Confidence            78888876

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.36  E-value=2.6e-12  Score=103.49  Aligned_cols=126  Identities=21%  Similarity=0.502  Sum_probs=90.9

Q ss_pred             CcccccCCCCCC-CCceeecCCCC-c---------------cccCcCCCCCC--CCCCC---EEecCCCCeeEe-CCCCC
Q psy9688          15 DINECETVKDVC-NYGICVNTNGN-G---------------NSKVDHCLTDP--CLGHG---TCINRSDRYQCL-CTPRY   71 (181)
Q Consensus        15 ~~~~c~~~~~~C-~~~~C~~~~~~-~---------------~~~~~~c~~~~--c~~~~---~C~~~~~~~~C~-c~~g~   71 (181)
                      ++++|.  .++| .++.|+++.++ |               |.++++|...+  |.+++   +|++..++|.|. |++||
T Consensus         2 DIDeC~--~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy   79 (634)
T 1yo8_A            2 DPDGCL--SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRY   79 (634)
T ss_dssp             --CGGG--GCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTE
T ss_pred             cccccC--CCCCCCCCEEecCCCCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCc
Confidence            788997  7889 88899988743 5               45788997777  99988   999999999998 99999


Q ss_pred             cCCCCCCC-CCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCC--CCCCCCCEEeeCCC----CceEeecCCCCcc--C
Q psy9688          72 SGNNCEKD-NGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTS--NPCLNDCVCVDDGN----LSFYCNCTEDFTG--E  142 (181)
Q Consensus        72 ~g~~c~~~-~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~--~~c~~~~~C~~~~~----~~~~C~C~~g~~g--~  142 (181)
                      +|..|+.. +..+    ...          +..|.  .+++|..  .+|..+++|++ ..    ++|+|.|++||.|  .
T Consensus        80 ~G~~c~g~g~~~~----~~d----------g~~C~--dideC~~~~~pC~~~~~Cvn-t~~~~~GsY~C~C~~Gy~GdG~  142 (634)
T 1yo8_A           80 RGNQPVGVGLEAA----KTE----------KQVCE--PENPCKDKTHNCHKHAECIY-LGHFSDPMYKCECQTGYAGDGL  142 (634)
T ss_dssp             EECCCEESSSHHH----HSC----------CCCEE--ECCTTTTTCCCCCTTEEEEE-CCTTCSSSEEEEECTTEEESSS
T ss_pred             ccCcccccccccc----ccC----------CCccc--ccccccCCCcccccCccccc-cccccccceeeeccCCccccCc
Confidence            98876410 0000    001          12222  5677874  48988899998 77    8999999999986  7


Q ss_pred             Cccc-cCCCCCCC-CCCCC
Q psy9688         143 YCQF-ENSAACVT-LNPCQ  159 (181)
Q Consensus       143 ~c~~-~~~~~c~~-~~~C~  159 (181)
                      .|+. .++++|.. ...|.
T Consensus       143 ~Ce~d~DiDeC~~~~~~C~  161 (634)
T 1yo8_A          143 ICGEDSDLDGWPNLNLVCA  161 (634)
T ss_dssp             SEEECTTSSSSCSSCCTTT
T ss_pred             ccccccCcccccCCCCccc
Confidence            8863 26778864 34565

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.33  E-value=7.1e-14  Score=93.73  Aligned_cols=125  Identities=22%  Similarity=0.535  Sum_probs=77.3

Q ss_pred             ccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCC-----
Q psy9688          40 SKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTS-----  114 (181)
Q Consensus        40 ~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~-----  114 (181)
                      .++|+|...||.+ ++|++..++|.|.|++||+|..+..   .|...   ....|... +.+..|.. .++.|..     
T Consensus         2 ~dideC~~~pC~n-g~C~n~~g~y~C~C~~G~~g~~~~~---~C~~~---~~~~C~~~-~~g~~C~~-~~~~c~~~~~C~   72 (147)
T 2w86_A            2 ADIDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKT---ICIET---IKGTCWQT-VIDGRCEI-NINGATLKSQCC   72 (147)
T ss_dssp             CCCCGGGGCCSBT-SEEEEETTEEEEECCTTEEECTTSS---BEEEC---CCEEEEEE-EETTEEEE-EEEEEECHHHHH
T ss_pred             CcCccCcCCCCCC-CEeECCCCCEEeECCCCcccCCCCC---eecCC---CCCcccCC-CCCCcccc-CCCccccCCccc
Confidence            4688998889975 7999999999999999999754321   11100   01122211 12223321 1222210     


Q ss_pred             --CCCCCCCEEeeCCCCceEeecCCCCc---cCCccccCCCCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         115 --NPCLNDCVCVDDGNLSFYCNCTEDFT---GEYCQFENSAACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       115 --~~c~~~~~C~~~~~~~~~C~C~~g~~---g~~c~~~~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                        ........|..   -.|.|.|++||+   |..|+  +|++|.. +++|.+ ++|+++.++  |.|.|++||
T Consensus        73 ~~~g~~~g~~C~~---c~~~C~C~~Gy~~~~g~~C~--dideC~~~~~~C~~-g~C~n~~g~--y~C~C~~Gy  137 (147)
T 2w86_A           73 SSLGAAWGSPCTL---CQVDPICGKGYSRIKGTQCE--DIDECEVFPGVCKN-GLCVNTRGS--FKCQCPSGM  137 (147)
T ss_dssp             TTTCSEETTTTEE---CCCCTTTCTTEEEEETTEEE--ECCHHHHSTTCSSS-SEEEEETTE--EEEECCTTC
T ss_pred             cCcCcccCCCccc---CCCcccCCCccccCCCCccC--ccccccCCCCCCCC-CEEECCCCC--EEeeCCCCC
Confidence              00000011111   126789999995   88897  8999975 356985 599999998  999999998

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.32  E-value=6.9e-13  Score=90.87  Aligned_cols=49  Identities=29%  Similarity=0.774  Sum_probs=41.8

Q ss_pred             ceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEeeC-CCCcceEEecCCCC
Q psy9688         130 SFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVAS-PGEKQITCLCLKEV  181 (181)
Q Consensus       130 ~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~-~g~~~~~C~C~~g~  181 (181)
                      .++|.|.+||+|..|+. ++++|...++|.++++|+++ +++  |.|.|++||
T Consensus       113 ~~~C~C~~G~~G~~C~~-~~~~C~~~~~C~~~g~C~~~~~~~--~~C~C~~G~  162 (169)
T 2vj2_A          113 PWQCLCETNWGGQLCDK-DLNYCGTHQPCLNGGTCSNTGPDK--YQCSCPEGY  162 (169)
T ss_dssp             TTCCEECTTEETTTTCE-ESCHHHHTCCCCTTCEEEECSTTC--EEEECCTTC
T ss_pred             CCEEeCCCCCCCCcccC-CCCCCCCCCCCCCCCEEcCCCCCC--cEeECCCCC
Confidence            57899999999999976 67888643689999999986 777  889999998

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.29  E-value=2.5e-12  Score=79.02  Aligned_cols=77  Identities=21%  Similarity=0.467  Sum_probs=59.5

Q ss_pred             CeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecCCCCcc
Q psy9688          62 RYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTG  141 (181)
Q Consensus        62 ~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g  141 (181)
                      +|.|.|.+||+|..|+  +++|.                             ..|      |++ ..+.|+|.|++||+ 
T Consensus         1 sy~C~C~~g~~g~~c~--~~~c~-----------------------------~~p------C~n-~~~~y~C~C~~G~~-   41 (91)
T 1tpg_A            1 SYQVICRDEKTQMIYQ--QHQSW-----------------------------LRP------VLR-SNRVEYCWCNSGRA-   41 (91)
T ss_dssp             CCCCCCBCSSSCCBCC--SSCEE-----------------------------EEE------CSS-SSCEEEEECSSSCC-
T ss_pred             CeeeECCCCCcCCeEC--CCccc-----------------------------CCc------ccc-CCCCcEeECCCCCc-
Confidence            4789999999998773  33332                             222      333 56789999999997 


Q ss_pred             CCccccCCCCCCCCCCCCCCCEEeeCC--CCcceEEecCCCC
Q psy9688         142 EYCQFENSAACVTLNPCQNNATCVASP--GEKQITCLCLKEV  181 (181)
Q Consensus       142 ~~c~~~~~~~c~~~~~C~~~~~C~~~~--g~~~~~C~C~~g~  181 (181)
                       .|+..++++|.. ++|.++++|+++.  ++  |.|.|++||
T Consensus        42 -~C~~~~~~~C~~-~pC~ngg~C~~~~~~~~--~~C~C~~G~   79 (91)
T 1tpg_A           42 -QCHSVPVKSCSE-PRCFNGGTCQQALYFSD--FVCQCPEGF   79 (91)
T ss_dssp             -BCCEECEEECSS-CCSCTTCEEEEESSSSC--EEEECCTTC
T ss_pred             -ccccCcCCcccC-CCCCCCCEeecCCCCCC--eEeECCCCC
Confidence             776226788987 8999999999887  66  899999997

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.26  E-value=6.7e-12  Score=75.62  Aligned_cols=67  Identities=27%  Similarity=0.774  Sum_probs=56.9

Q ss_pred             CCCCCCC-CCCCCCCEEeeCCCCceEeecCCCCc--cCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         108 EIRDCTS-NPCLNDCVCVDDGNLSFYCNCTEDFT--GEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       108 ~~~~c~~-~~c~~~~~C~~~~~~~~~C~C~~g~~--g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++++|.. .+|.+ ++|++ ..++|+|.|++||.  |..|.  ++++|...++|.+ ++|+++.++  |.|.|++||
T Consensus         4 dideC~~~~~C~~-g~C~n-~~g~y~C~C~~Gy~~~g~~C~--dideC~~~~~C~~-~~C~n~~g~--y~C~C~~G~   73 (82)
T 1emn_A            4 DMDECKEPDVCKH-GQCIN-TDGSYRCECPFGYILAGNECV--DTDECSVGNPCGN-GTCKNVIGG--FECTCEEGF   73 (82)
T ss_dssp             CCCSSSSTTSCSS-SEECC-CSSCCCEECCTTEEEETTEEE--ECCGGGTCCTTSS-SCEEECSSS--EEECCSSSS
T ss_pred             ccccCCCCCCcCC-CEEEe-cCCCEEEECCCCeECCCCccC--CcccccCCCCCCC-CEeECCCCC--EEeECCCCe
Confidence            5677775 67864 89998 88999999999997  88896  8999974378976 599999998  899999997

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.25  E-value=1.2e-11  Score=79.21  Aligned_cols=92  Identities=25%  Similarity=0.664  Sum_probs=60.2

Q ss_pred             ccCcCCCCCC--------CCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCC
Q psy9688          40 SKVDHCLTDP--------CLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRD  111 (181)
Q Consensus        40 ~~~~~c~~~~--------c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~  111 (181)
                      .|+++|...|        |.++++|++..+.|.|.|++||+|..|+..++                           +++
T Consensus         4 ~d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~---------------------------~~~   56 (114)
T 1aut_L            4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS---------------------------FLN   56 (114)
T ss_dssp             ----CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECC---------------------------SSS
T ss_pred             eecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCc---------------------------CCc
Confidence            4567777777        88999999999999999999999999873321                           122


Q ss_pred             CCCC--CCCCCCEEeeCCCCceEeecCCCCc----cCCccccCCCCCCCCCCCCCCCEEeeC
Q psy9688         112 CTSN--PCLNDCVCVDDGNLSFYCNCTEDFT----GEYCQFENSAACVTLNPCQNNATCVAS  167 (181)
Q Consensus       112 c~~~--~c~~~~~C~~~~~~~~~C~C~~g~~----g~~c~~~~~~~c~~~~~C~~~~~C~~~  167 (181)
                      |...  .|..  +|++ ..++|+|.|++||+    +..|.  ++.   . .+|..++.|+..
T Consensus        57 C~~~~~~C~~--~C~n-~~g~y~C~C~~G~~~~~~g~~C~--~~~---~-~pC~~~~~~i~~  109 (114)
T 1aut_L           57 CSLDNGGCTH--YCLE-EVGWRRCSCAPGYKLGDDLLQCH--PAV---K-FPCGRPWKRMEK  109 (114)
T ss_dssp             SSSGGGGCSS--EEEE-CSSSEEEECCTTEEECTTSSCEE--ECS---S-SCTTCCC-----
T ss_pred             CcCCCCCCCC--EeEC-CCCCEEeECCCCeeECCCCCccC--cCc---c-cCCCCCCccCCC
Confidence            2221  2332  8988 88999999999998    45554  221   2 467777777643

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.22  E-value=1.7e-11  Score=92.17  Aligned_cols=134  Identities=28%  Similarity=0.777  Sum_probs=50.8

Q ss_pred             CCCC-CCceeecCC-----CCc---cccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcE
Q psy9688          23 KDVC-NYGICVNTN-----GNG---NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGV   93 (181)
Q Consensus        23 ~~~C-~~~~C~~~~-----~~~---~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~   93 (181)
                      +.+| +++.|++..     .+|   ..+.+.|. .+|.++++|+.   .+.|.|.+||+|..|+.  +.|. .+|.+++.
T Consensus       152 ~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~-~~C~~~G~C~~---~~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~  224 (324)
T 2ygq_A          152 PGGCRNGGFCNERRICECPDGFHGPHCEKALCT-PRCMNGGLCVT---PGFCICPPGFYGVNCDK--ANCS-TTCFNGGT  224 (324)
T ss_dssp             SSCCCSSCEECTTSCEECCTTEESSSSCEESSS-SCCCTTCEECS---SCCEECCTTCBTTTTCB--CCCS-SCCCSSCC
T ss_pred             CCCCCCCCEECCCCeEECCCCCcCCCCCCCCCC-CCCCCCCEEcC---CCEEeCCCCccCCCccc--CcCC-CCCCCCCe
Confidence            3578 888887532     122   12234564 47888999975   46899999999999974  3353 56777777


Q ss_pred             EeeCC-------eeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEee
Q psy9688          94 CVDEV-------YKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVA  166 (181)
Q Consensus        94 C~~~~-------~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~  166 (181)
                      |....       |.|..|..   +.|. .+|.++++|+.    .++|.|.+||.|..|+   ++.|.  .+|.++++|++
T Consensus       225 C~~~~~C~C~~G~~G~~C~~---~~C~-~~C~~~g~C~~----~~~C~C~~G~~G~~C~---~~~C~--~~C~~~g~C~~  291 (324)
T 2ygq_A          225 CFYPGKCICPPGLEGEQCEI---SKCP-QPCRNGGKCIG----KSKCKCSKGYQGDLCS---KPVCE--PGCGAHGTCHE  291 (324)
T ss_dssp             BSCSSCBCCCTTCCTTTTC-------------------------------------------------------------
T ss_pred             eCCCCeeeCCCCccCCCCCc---CcCC-CcCCCCCEECC----CCEEECCCCCcCCCCc---CCCCC--CCCCCCCEECC
Confidence            76532       67777752   4554 57888889864    3689999999999996   35564  47888999986


Q ss_pred             CCCCcceEEecCCCC
Q psy9688         167 SPGEKQITCLCLKEV  181 (181)
Q Consensus       167 ~~g~~~~~C~C~~g~  181 (181)
                      .     +.|.|++||
T Consensus       292 ~-----~~C~C~~G~  301 (324)
T 2ygq_A          292 P-----NKCQCQEGW  301 (324)
T ss_dssp             ---------------
T ss_pred             C-----CEeECCCCC
Confidence            2     569999987

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.20  E-value=2.2e-11  Score=81.10  Aligned_cols=87  Identities=22%  Similarity=0.553  Sum_probs=65.4

Q ss_pred             cccCcCCCCC---CCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCC-
Q psy9688          39 NSKVDHCLTD---PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTS-  114 (181)
Q Consensus        39 ~~~~~~c~~~---~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~-  114 (181)
                      +.++++|...   +|.++++|++..+.|.|.|++||+|..++..+..                ..+..|.  ++++|.. 
T Consensus        41 C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~----------------~~~~~C~--dideC~~~  102 (143)
T 2bou_A           41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKN----------------ESENTCQ--DVDECSSG  102 (143)
T ss_dssp             CEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSS----------------GGGCCEE--ECCHHHHT
T ss_pred             CCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCcccccc----------------CCCCCcC--CccCccCc
Confidence            4577888664   7988899999999999999999998766422110                0122233  5677763 


Q ss_pred             -CCCCCCCEEeeCCCCceEeecCCCCccCCc
Q psy9688         115 -NPCLNDCVCVDDGNLSFYCNCTEDFTGEYC  144 (181)
Q Consensus       115 -~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c  144 (181)
                       .+|..+++|++ ..++|+|.|++||.+...
T Consensus       103 ~~~C~~~~~C~n-~~g~y~C~C~~Gy~g~~~  132 (143)
T 2bou_A          103 QHQCDSSTVCFN-TVGSYSCRCRPGWKPRHG  132 (143)
T ss_dssp             CCCCCTTSEEEE-CSSCEEEECCSSSCBCTT
T ss_pred             CCCCCCCCEEEC-CCCCEEeeCCCCcccCCC
Confidence             68988899999 899999999999987654

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.19  E-value=2e-11  Score=81.45  Aligned_cols=76  Identities=28%  Similarity=0.812  Sum_probs=57.8

Q ss_pred             cccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCC
Q psy9688          39 NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCL  118 (181)
Q Consensus        39 ~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~  118 (181)
                      +.++++|.+.||.++++|++..+.|.|.|++||+|..|+ ++++|...+                           .+|.
T Consensus        45 c~dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~-~~deC~~~~---------------------------~~C~   96 (146)
T 1x7a_L           45 YVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE-LDATCNIKN---------------------------GRCK   96 (146)
T ss_dssp             -----CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTC-EECCTTSGG---------------------------GSCS
T ss_pred             CCCcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCC-CCccccCCC---------------------------CCCc
Confidence            678899999999999999999999999999999999997 456664211                           1233


Q ss_pred             CCCEE-eeCCCCceEeecCCCCc----cCCcc
Q psy9688         119 NDCVC-VDDGNLSFYCNCTEDFT----GEYCQ  145 (181)
Q Consensus       119 ~~~~C-~~~~~~~~~C~C~~g~~----g~~c~  145 (181)
                      .  +| ++ ..++|+|.|++||.    |..|.
T Consensus        97 ~--~C~~n-~~g~y~C~C~~Gy~l~~dG~~C~  125 (146)
T 1x7a_L           97 Q--FCKTG-ADSKVLCSCTTGYRLAPDQKSCK  125 (146)
T ss_dssp             S--BCCCC-SSSCCCCBCCTTEEECTTSSSEE
T ss_pred             C--CCCCC-CCCCEEeEcCCCcEeCCCCCcCC
Confidence            2  67 66 78899999999998    78887

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.18  E-value=2.9e-11  Score=72.77  Aligned_cols=72  Identities=39%  Similarity=0.847  Sum_probs=55.4

Q ss_pred             cccCcCCCC-CCCCCCCEEecCCCCeeEeCCCCCc--CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCC
Q psy9688          39 NSKVDHCLT-DPCLGHGTCINRSDRYQCLCTPRYS--GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSN  115 (181)
Q Consensus        39 ~~~~~~c~~-~~c~~~~~C~~~~~~~~C~c~~g~~--g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~  115 (181)
                      +.++++|.. .+|.+ ++|++..++|.|.|++||.  |..|+ ++++|..                            ..
T Consensus         2 C~dideC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~-dideC~~----------------------------~~   51 (82)
T 1emn_A            2 AVDMDECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNECV-DTDECSV----------------------------GN   51 (82)
T ss_dssp             CCCCCSSSSTTSCSS-SEECCCSSCCCEECCTTEEEETTEEE-ECCGGGT----------------------------CC
T ss_pred             CCccccCCCCCCcCC-CEEEecCCCEEEECCCCeECCCCccC-CcccccC----------------------------CC
Confidence            356788874 78875 8999999999999999997  77775 5554421                            33


Q ss_pred             CCCCCCEEeeCCCCceEeecCCCCccC
Q psy9688         116 PCLNDCVCVDDGNLSFYCNCTEDFTGE  142 (181)
Q Consensus       116 ~c~~~~~C~~~~~~~~~C~C~~g~~g~  142 (181)
                      +|.+ ++|++ ..++|+|.|++||.+.
T Consensus        52 ~C~~-~~C~n-~~g~y~C~C~~G~~g~   76 (82)
T 1emn_A           52 PCGN-GTCKN-VIGGFECTCEEGFEPG   76 (82)
T ss_dssp             TTSS-SCEEE-CSSSEEECCSSSSCCC
T ss_pred             CCCC-CEeEC-CCCCEEeECCCCeEeC
Confidence            5554 58888 8899999999999865

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.17  E-value=1.2e-11  Score=75.16  Aligned_cols=67  Identities=25%  Similarity=0.660  Sum_probs=54.2

Q ss_pred             CCCCCCCCC--CCCCCEEeeCCCCceEeecCCCCc-----cCCccccCCCCCCC-CCCCCCCCEEeeCCCCcceEEecCC
Q psy9688         108 EIRDCTSNP--CLNDCVCVDDGNLSFYCNCTEDFT-----GEYCQFENSAACVT-LNPCQNNATCVASPGEKQITCLCLK  179 (181)
Q Consensus       108 ~~~~c~~~~--c~~~~~C~~~~~~~~~C~C~~g~~-----g~~c~~~~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~  179 (181)
                      ++++|...+  |.+ ++|++ ..++|+|.|++||.     |..|.  ++++|.. +..|. +++|+++.|+  |.|.|++
T Consensus         2 dideC~~~~~~C~~-g~C~n-~~g~y~C~C~~Gy~~~~~~g~~C~--dideC~~~~~~C~-~~~C~n~~g~--y~C~C~~   74 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVN-TPGDFECKCDEGYESGFMMMKNCM--DIDECQRDPLLCR-GGVCHNTEGS--YRCECPP   74 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEE-ETTEEEECCCSSEEECTTTSSSEE--ECCHHHHCSSTTT-TSEEEEETTE--EEEESCT
T ss_pred             ccccccCCCCCCCC-CEEEC-CCCCEEeeCCCCcCccCCCCCccC--CcccccCCCCcCC-CCEeEcCCCC--EEEECcC
Confidence            466776554  754 58999 89999999999997     67786  8899976 23475 5799999998  8999999


Q ss_pred             CC
Q psy9688         180 EV  181 (181)
Q Consensus       180 g~  181 (181)
                      ||
T Consensus        75 G~   76 (86)
T 1lmj_A           75 GH   76 (86)
T ss_dssp             TS
T ss_pred             Cc
Confidence            97

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.17  E-value=3.4e-11  Score=98.22  Aligned_cols=126  Identities=26%  Similarity=0.668  Sum_probs=79.0

Q ss_pred             CCCCCCCCCCCEEecCCCCee---EeCCCCCcCCCCCCCC--------CCCCC----CCCCCCcEEee----------CC
Q psy9688          44 HCLTDPCLGHGTCINRSDRYQ---CLCTPRYSGNNCEKDN--------GDCSS----NPCLNDGVCVD----------EV   98 (181)
Q Consensus        44 ~c~~~~c~~~~~C~~~~~~~~---C~c~~g~~g~~c~~~~--------~~c~~----~~c~~~~~C~~----------~~   98 (181)
                      +|...+|.+.+.|.+..+.+.   |.|.+||+|..|+..+        ++|..    .+|.+++.|..          ..
T Consensus       436 ~C~~~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~g~C~C~~~~~~G  515 (690)
T 3fcs_B          436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGK  515 (690)
T ss_dssp             GGGTTCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECSSSEEECCCSSCC
T ss_pred             CCcCCCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEECCeeEeecCCCCC
Confidence            355566666667765555555   7888888888886544        45653    23666665542          22


Q ss_pred             eeccccccCCCCCCCC---CCCCCCCEEeeCCCCceEeecCCCCccCCccc-cCCCCCCC--CCCCCCCCEEeeCCCCcc
Q psy9688          99 YKGRYWELPEIRDCTS---NPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF-ENSAACVT--LNPCQNNATCVASPGEKQ  172 (181)
Q Consensus        99 ~~g~~c~~~~~~~c~~---~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~-~~~~~c~~--~~~C~~~~~C~~~~g~~~  172 (181)
                      |.|..|+. ++..|..   .+|.++++|..     +.|.|.+||+|..|+. .+++.|..  ..+|.++|+|+.  +   
T Consensus       516 y~G~~Ce~-~~~~C~~~~~~~C~~~G~C~~-----g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~--g---  584 (690)
T 3fcs_B          516 ITGKYCEC-DDFSCVRYKGEMCSGHGQCSC-----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC--G---  584 (690)
T ss_dssp             CBSTTSCB-CSSCCCBSSSSBGGGSEEEET-----TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET--T---
T ss_pred             eeCCCcCc-ccCcCcCCCCCCCCCCCEecC-----CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC--C---
Confidence            66777764 4556654   36777777753     5688888888887762 14566653  145777788864  2   


Q ss_pred             eEEec-CCCC
Q psy9688         173 ITCLC-LKEV  181 (181)
Q Consensus       173 ~~C~C-~~g~  181 (181)
                       .|.| ++||
T Consensus       585 -~C~C~~~Gy  593 (690)
T 3fcs_B          585 -SCVCIQPGS  593 (690)
T ss_dssp             -EEECCSTTC
T ss_pred             -EEECCCCCc
Confidence             3777 7776

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.14  E-value=1.5e-10  Score=94.42  Aligned_cols=106  Identities=26%  Similarity=0.616  Sum_probs=75.5

Q ss_pred             CCCCCCCEEecCCCCeeEeCC----CCCcCCCCCCCCCCCCC---CCCCCCcEEeeCC------eecccccc-CCCCCCC
Q psy9688          48 DPCLGHGTCINRSDRYQCLCT----PRYSGNNCEKDNGDCSS---NPCLNDGVCVDEV------YKGRYWEL-PEIRDCT  113 (181)
Q Consensus        48 ~~c~~~~~C~~~~~~~~C~c~----~g~~g~~c~~~~~~c~~---~~c~~~~~C~~~~------~~g~~c~~-~~~~~c~  113 (181)
                      .+|.++++|+.    +.|.|.    +||+|..|+.++..|..   .+|.+.+.|....      |.|..|.. ..++.|.
T Consensus       493 ~~Cs~~G~C~~----g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~g~C~C~~Gy~G~~CeC~~~~~~C~  568 (690)
T 3fcs_B          493 PVCSQRGECLC----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCM  568 (690)
T ss_dssp             CGGGGSEEECS----SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEETTEEEECTTEESSSSCEECCCTTTB
T ss_pred             CCCCCCCEEEC----CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecCCeeECcCCCcCCCCccCCCCCccc
Confidence            34777888874    388888    88888888766777764   3577777776533      78888873 1456776


Q ss_pred             C---CCCCCCCEEeeCCCCceEeec-CCCCccCCccccCCCCCCCCCCCCCCCEEee
Q psy9688         114 S---NPCLNDCVCVDDGNLSFYCNC-TEDFTGEYCQFENSAACVTLNPCQNNATCVA  166 (181)
Q Consensus       114 ~---~~c~~~~~C~~~~~~~~~C~C-~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~  166 (181)
                      .   .+|.++++|+.     ..|.| .+||.|..|+.  -..|  +++|.+++.|++
T Consensus       569 ~~~g~~C~~~G~C~~-----g~C~C~~~Gy~G~~Ce~--C~~C--~~~C~~~g~Cv~  616 (690)
T 3fcs_B          569 SSNGLLCSGRGKCEC-----GSCVCIQPGSYGDTCEK--CPTC--PDACTFKKECVE  616 (690)
T ss_dssp             CTTSSBTSSSCEEET-----TEEECCSTTCBSTTSCB--CTTS--CCTTTSCCGGGT
T ss_pred             CCCCCCCCCCCEEeC-----CEEECCCCCccCCCcCc--CCCC--CCCCCCCCCccc
Confidence            4   46888999964     27999 89999999962  2345  357888888763

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.11  E-value=4.4e-11  Score=79.84  Aligned_cols=67  Identities=30%  Similarity=0.744  Sum_probs=56.3

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCC-CCCCCCCCEE-eeCCCCcceEEecCCCC
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVT-LNPCQNNATC-VASPGEKQITCLCLKEV  181 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~-~~~C~~~~~C-~~~~g~~~~~C~C~~g~  181 (181)
                      ++++|...||.++++|++ ..++|+|.|++||+|..|+  ++++|.. +.+|.+  +| +++.++  |.|.|++||
T Consensus        47 dideC~~~pC~n~g~C~~-~~~~y~C~C~~G~~G~~C~--~~deC~~~~~~C~~--~C~~n~~g~--y~C~C~~Gy  115 (146)
T 1x7a_L           47 DGDQCEPNPCLNGGLCKD-DINSYECWCQVGFEGKNCE--LDATCNIKNGRCKQ--FCKTGADSK--VLCSCTTGY  115 (146)
T ss_dssp             ---CCSSCSSCTTCEEEE-CSSCEEEECCSSEESTTTC--EECCTTSGGGSCSS--BCCCCSSSC--CCCBCCTTE
T ss_pred             CcCcCCCCCCCCCCEeEC-CCCCEEEecCCCCcCCcCC--CCccccCCCCCCcC--CCCCCCCCC--EEeEcCCCc
Confidence            678898889999999999 8899999999999999998  5688876 346765  89 999998  889999997

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.10  E-value=2.1e-11  Score=84.83  Aligned_cols=78  Identities=31%  Similarity=0.729  Sum_probs=25.4

Q ss_pred             cccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCC-CCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCC
Q psy9688          39 NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDN-GDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPC  117 (181)
Q Consensus        39 ~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~-~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c  117 (181)
                      +.++++|.+.||.++++|++..+.|.|.|++||+|..|+..+ ++|...+                           .+|
T Consensus        39 c~dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~---------------------------~~C   91 (195)
T 1nfu_B           39 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDN---------------------------GDC   91 (195)
T ss_dssp             ------------------------------------------CCGGGTGG---------------------------GGC
T ss_pred             CCCCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCCC---------------------------CCC
Confidence            678899999999999999999999999999999999998545 4453211                           124


Q ss_pred             CCCCEEeeCCCCceEeecCCCCc----cCCccc
Q psy9688         118 LNDCVCVDDGNLSFYCNCTEDFT----GEYCQF  146 (181)
Q Consensus       118 ~~~~~C~~~~~~~~~C~C~~g~~----g~~c~~  146 (181)
                      ..  +|++ ..++|.|.|++||.    |..|..
T Consensus        92 ~~--~C~n-~~gsy~C~C~~Gy~l~~dG~~C~~  121 (195)
T 1nfu_B           92 DQ--FCHE-EQNSVVCSCARGYTLADNGKACIP  121 (195)
T ss_dssp             SS--EEEE-ETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CC--EeEC-CCCCeEEECCCCceeCCCCCcccc
Confidence            43  8888 88999999999999    888874

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.10  E-value=1.1e-10  Score=77.53  Aligned_cols=81  Identities=30%  Similarity=0.681  Sum_probs=62.3

Q ss_pred             cccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCC
Q psy9688          39 NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCL  118 (181)
Q Consensus        39 ~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~  118 (181)
                      +.++++|.+.||.++++|++..+.|.|.|++||+|..|+.+++++...++.                        ...|.
T Consensus        44 c~did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~------------------------~~~C~   99 (142)
T 2c4f_L           44 YSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNE------------------------NGGCE   99 (142)
T ss_dssp             HTTCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTG------------------------GGGCS
T ss_pred             CCccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccccCC------------------------CCCcc
Confidence            567899999999999999999999999999999999998545444221111                        11122


Q ss_pred             CCCEEeeCCCC-ceEeecCCCCc----cCCccc
Q psy9688         119 NDCVCVDDGNL-SFYCNCTEDFT----GEYCQF  146 (181)
Q Consensus       119 ~~~~C~~~~~~-~~~C~C~~g~~----g~~c~~  146 (181)
                        .+|++ ..+ +|+|.|++||.    |..|..
T Consensus       100 --~~C~~-~~g~~y~C~C~~Gy~l~~dG~~C~~  129 (142)
T 2c4f_L          100 --QYCSD-HTGTKRSCRCHEGYSLLADGVSCTP  129 (142)
T ss_dssp             --SEEEC-CTTSCCEEECCTTEEECTTSSCEEE
T ss_pred             --CEeEC-CCCCCEEEECCCCceECCCCCCCCC
Confidence              27887 777 99999999998    888873

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.09  E-value=3e-11  Score=73.55  Aligned_cols=77  Identities=30%  Similarity=0.746  Sum_probs=56.0

Q ss_pred             cCcCCCCCC--CCCCCEEecCCCCeeEeCCCCCc----CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCC
Q psy9688          41 KVDHCLTDP--CLGHGTCINRSDRYQCLCTPRYS----GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTS  114 (181)
Q Consensus        41 ~~~~c~~~~--c~~~~~C~~~~~~~~C~c~~g~~----g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~  114 (181)
                      ++++|...+  | ++++|++..+.|.|.|++||.    |..|+ ++                             ++|..
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~-di-----------------------------deC~~   50 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCE-DI-----------------------------DECSE   50 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEE-CC-----------------------------CHHHH
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCC-Cc-----------------------------CeeCC
Confidence            578887766  8 678999999999999999998    55554 44                             44444


Q ss_pred             CCCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCC
Q psy9688         115 NPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACV  153 (181)
Q Consensus       115 ~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~  153 (181)
                      .+|.  ++|++ ..++|+|.|+ |+.|..+.. +...|.
T Consensus        51 ~~C~--~~C~n-~~g~y~C~C~-g~~G~~~~~-~~~~C~   84 (87)
T 1z6c_A           51 NMCA--QLCVN-YPGGYTCYCD-GKKGFKLAQ-DQKSCE   84 (87)
T ss_dssp             SCCS--SEECC-CSSSCCEECC-SSSCCBCCT-TSSSCB
T ss_pred             CCCC--CEEEc-cCCCEEEECC-CCcCCcccC-CCCcce
Confidence            4555  58888 8899999997 666665553 444453

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.07  E-value=1.1e-10  Score=77.64  Aligned_cols=69  Identities=26%  Similarity=0.595  Sum_probs=56.5

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCC---EEeeCCC-CcceEEecCCCC
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNA---TCVASPG-EKQITCLCLKEV  181 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~---~C~~~~g-~~~~~C~C~~g~  181 (181)
                      ++++|...||.++++|++ ..++|+|.|++||+|..|+. +++.|.. ..+.+++   +|+++.+ +  |.|.|++||
T Consensus        46 did~C~~~pC~n~g~C~~-~~g~y~C~C~~G~~G~~C~~-~~~~c~~-c~~~~~~C~~~C~~~~g~~--y~C~C~~Gy  118 (142)
T 2c4f_L           46 DGDQCASSPCQNGGSCKD-QLQSYICFCLPAFEGRNCET-HKDDQLI-CVNENGGCEQYCSDHTGTK--RSCRCHEGY  118 (142)
T ss_dssp             TCCGGGGCCCCTTCEEEE-ETTEEEEECCTTEESTTSCE-EGGGCCS-TTTGGGGCSSEEECCTTSC--CEEECCTTE
T ss_pred             ccCcCcCCCcCCCCEEeC-CCCCEEeeCCCCccCCcccc-Ccccccc-ccCCCCCccCEeECCCCCC--EEEECCCCc
Confidence            678898889999999999 88999999999999999984 3555433 2333444   9999998 8  889999997

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.07  E-value=3.9e-11  Score=78.99  Aligned_cols=78  Identities=31%  Similarity=0.737  Sum_probs=24.9

Q ss_pred             cccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCC-CCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCC
Q psy9688          39 NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDN-GDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPC  117 (181)
Q Consensus        39 ~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~-~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c  117 (181)
                      +.++++|.+.||.++++|++..+.|.|.|++||+|..|+..+ ++|...                           ..+|
T Consensus        39 c~d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~---------------------------~~~C   91 (134)
T 2vh0_B           39 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLD---------------------------NGDC   91 (134)
T ss_dssp             ------------------------------------------CCGGGTG---------------------------GGGC
T ss_pred             CCCcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccC---------------------------CCCC
Confidence            678899999999999999999999999999999999998445 445321                           1123


Q ss_pred             CCCCEEeeCCCCceEeecCCCCc----cCCccc
Q psy9688         118 LNDCVCVDDGNLSFYCNCTEDFT----GEYCQF  146 (181)
Q Consensus       118 ~~~~~C~~~~~~~~~C~C~~g~~----g~~c~~  146 (181)
                      ..  +|++ ..++|+|.|++||.    |..|..
T Consensus        92 ~~--~C~~-~~g~y~C~C~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B           92 DQ--FCHE-EQNSVVCSCARGYTLADNGKACIP  121 (134)
T ss_dssp             SS--EEEE-ETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CC--EeEC-CCCCEEEECCCCcEECCCCCccCc
Confidence            33  7888 78999999999998    888873

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.06  E-value=2.3e-10  Score=85.97  Aligned_cols=114  Identities=31%  Similarity=0.815  Sum_probs=67.1

Q ss_pred             cCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCC-------eeccccccCCCCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEV-------YKGRYWELPEIRDCTSN  115 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~-------~~g~~c~~~~~~~c~~~  115 (181)
                      ..| +.+|.++++|.+   .+.|.|.+||+|..|+.  +.|. .+|.+++.|....       |.|..|..   +.|. .
T Consensus       149 ~~C-~~~C~~~G~C~~---~~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~~~~C~C~~G~~G~~C~~---~~C~-~  217 (324)
T 2ygq_A          149 AEC-PGGCRNGGFCNE---RRICECPDGFHGPHCEK--ALCT-PRCMNGGLCVTPGFCICPPGFYGVNCDK---ANCS-T  217 (324)
T ss_dssp             CCC-SSCCCSSCEECT---TSCEECCTTEESSSSCE--ESSS-SCCCTTCEECSSCCEECCTTCBTTTTCB---CCCS-S
T ss_pred             CCC-CCCCCCCCEECC---CCeEECCCCCcCCCCCC--CCCC-CCCCCCCEEcCCCEEeCCCCccCCCccc---CcCC-C
Confidence            345 467999999975   47999999999999974  3464 4688888887532       77877763   3464 5


Q ss_pred             CCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         116 PCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       116 ~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +|.++++|+.    .++|.|.+||.|..|+   ++.|.  .+|.++++|+.   .  +.|.|++||
T Consensus       218 ~C~~~G~C~~----~~~C~C~~G~~G~~C~---~~~C~--~~C~~~g~C~~---~--~~C~C~~G~  269 (324)
T 2ygq_A          218 TCFNGGTCFY----PGKCICPPGLEGEQCE---ISKCP--QPCRNGGKCIG---K--SKCKCSKGY  269 (324)
T ss_dssp             CCCSSCCBSC----SSCBCCCTTCCTTTTC------------------------------------
T ss_pred             CCCCCCeeCC----CCeeeCCCCccCCCCC---cCcCC--CcCCCCCEECC---C--CEEECCCCC
Confidence            7999999975    2689999999999996   35674  58999999974   2  569999987

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.05  E-value=7.3e-11  Score=71.68  Aligned_cols=69  Identities=30%  Similarity=0.819  Sum_probs=52.2

Q ss_pred             cCcCCCCCC--CCCCCEEecCCCCeeEeCCCCCc-----CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCC
Q psy9688          41 KVDHCLTDP--CLGHGTCINRSDRYQCLCTPRYS-----GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCT  113 (181)
Q Consensus        41 ~~~~c~~~~--c~~~~~C~~~~~~~~C~c~~g~~-----g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~  113 (181)
                      ++++|...+  |.+ ++|++..++|.|.|++||+     |..|+ +|                             ++|.
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-di-----------------------------deC~   50 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-DI-----------------------------DECQ   50 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-EC-----------------------------CHHH
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-Cc-----------------------------cccc
Confidence            678887655  864 5999999999999999997     44443 34                             4444


Q ss_pred             CCC--CCCCCEEeeCCCCceEeecCCCCccC
Q psy9688         114 SNP--CLNDCVCVDDGNLSFYCNCTEDFTGE  142 (181)
Q Consensus       114 ~~~--c~~~~~C~~~~~~~~~C~C~~g~~g~  142 (181)
                      ..+  |. +++|++ ..++|+|.|++||.+.
T Consensus        51 ~~~~~C~-~~~C~n-~~g~y~C~C~~G~~~~   79 (86)
T 1lmj_A           51 RDPLLCR-GGVCHN-TEGSYRCECPPGHQLS   79 (86)
T ss_dssp             HCSSTTT-TSEEEE-ETTEEEEESCTTSCCC
T ss_pred             CCCCcCC-CCEeEc-CCCCEEEECcCCcccC
Confidence            333  44 468999 8999999999999864

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.05  E-value=2.7e-10  Score=69.87  Aligned_cols=76  Identities=17%  Similarity=0.395  Sum_probs=56.1

Q ss_pred             CCCCCcccCCCCCCcccccCCCCCC-CC---ceee--cCCCCcc--ccCcCCCCCCCCCCCEEecCC--CCeeEeCCCCC
Q psy9688           2 YFKPISLSTLCESDINECETVKDVC-NY---GICV--NTNGNGN--SKVDHCLTDPCLGHGTCINRS--DRYQCLCTPRY   71 (181)
Q Consensus         2 ~C~~g~~g~~C~~~~~~c~~~~~~C-~~---~~C~--~~~~~~~--~~~~~c~~~~c~~~~~C~~~~--~~~~C~c~~g~   71 (181)
                      .|.+||+|..|  ++++|.  ..+| +.   ..|.  .... .+  .++++|.+.||.++++|++..  +.|.|.|++||
T Consensus         5 ~C~~g~~g~~c--~~~~c~--~~pC~n~~~~y~C~C~~G~~-~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~   79 (91)
T 1tpg_A            5 ICRDEKTQMIY--QQHQSW--LRPVLRSNRVEYCWCNSGRA-QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGF   79 (91)
T ss_dssp             CCBCSSSCCBC--CSSCEE--EEECSSSSCEEEEECSSSCC-BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTC
T ss_pred             ECCCCCcCCeE--CCCccc--CCccccCCCCcEeECCCCCc-ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCC
Confidence            48899999988  477776  3444 22   1222  1111 24  367899999999999999876  88999999999


Q ss_pred             cCCCCCCCCCC
Q psy9688          72 SGNNCEKDNGD   82 (181)
Q Consensus        72 ~g~~c~~~~~~   82 (181)
                      +|..|+.++++
T Consensus        80 ~G~~Ce~~ide   90 (91)
T 1tpg_A           80 AGKSCEIDTRA   90 (91)
T ss_dssp             BSSSCCBCSSC
T ss_pred             cCCcCCcCCCC
Confidence            99999877653

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.02  E-value=2.9e-10  Score=72.74  Aligned_cols=69  Identities=29%  Similarity=0.695  Sum_probs=52.3

Q ss_pred             CCCCCCCCC--------CCCCCEEeeCCCCceEeecCCCCccCCcccc-CCCCCCC-CCCCCCCCEEeeCCCCcceEEec
Q psy9688         108 EIRDCTSNP--------CLNDCVCVDDGNLSFYCNCTEDFTGEYCQFE-NSAACVT-LNPCQNNATCVASPGEKQITCLC  177 (181)
Q Consensus       108 ~~~~c~~~~--------c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~-~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C  177 (181)
                      ++++|...|        |.++++|++ ..++|+|.|++||+|..|+.. ++++|.. ...|.+  +|+++.++  |.|.|
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~-~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~g~--y~C~C   79 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCID-GIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGW--RRCSC   79 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECC-CSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECSSS--EEEEC
T ss_pred             ecccccCCCccccccccCCCcCCCCC-CCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCCCC--EEeEC
Confidence            445666555        888899998 889999999999999999841 1246764 234654  99999998  89999


Q ss_pred             CCCC
Q psy9688         178 LKEV  181 (181)
Q Consensus       178 ~~g~  181 (181)
                      ++||
T Consensus        80 ~~G~   83 (114)
T 1aut_L           80 APGY   83 (114)
T ss_dssp             CTTE
T ss_pred             CCCe
Confidence            9997

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.02  E-value=7.7e-11  Score=71.73  Aligned_cols=65  Identities=32%  Similarity=0.865  Sum_probs=53.9

Q ss_pred             CCCCCCCCC--CCCCCEEeeCCCCceEeecCCCCc----cCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEec--CC
Q psy9688         108 EIRDCTSNP--CLNDCVCVDDGNLSFYCNCTEDFT----GEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLC--LK  179 (181)
Q Consensus       108 ~~~~c~~~~--c~~~~~C~~~~~~~~~C~C~~g~~----g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C--~~  179 (181)
                      ++++|...+  | .+++|++ ..++|+|.|++||+    |..|+  ++++|.. ++|.  ++|+++.++  |.|.|  .+
T Consensus         2 dideC~~~~~~C-~~~~C~n-~~g~y~C~C~~G~~~~~~g~~C~--dideC~~-~~C~--~~C~n~~g~--y~C~C~g~~   72 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKN-IPGDFECECPEGYRYNLKSKSCE--DIDECSE-NMCA--QLCVNYPGG--YTCYCDGKK   72 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCC-BTTBCCCSSSTTCEEETTTTEEE--CCCHHHH-SCCS--SEECCCSSS--CCEECCSSS
T ss_pred             ccccccCCCCCC-CCCEeEC-CCCCEEEECCCCceECCCCCcCC--CcCeeCC-CCCC--CEEEccCCC--EEEECCCCc
Confidence            467777665  7 6788998 88999999999998    78886  8999976 7887  599999998  77999  46


Q ss_pred             CC
Q psy9688         180 EV  181 (181)
Q Consensus       180 g~  181 (181)
                      ||
T Consensus        73 G~   74 (87)
T 1z6c_A           73 GF   74 (87)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.00  E-value=6.2e-11  Score=82.46  Aligned_cols=68  Identities=26%  Similarity=0.735  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCC-CCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENS-AACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~-~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++++|...||.++++|++ ..++|.|.|++||+|..|+. ++ ++|.. ..+|.+  +|+++.++  |.|.|++||
T Consensus        41 dideC~~~pC~ngg~C~n-~~g~y~C~C~~Gf~G~~Ce~-~i~deC~~~~~~C~~--~C~n~~gs--y~C~C~~Gy  110 (195)
T 1nfu_B           41 DGDQCETSPCQNQGKCKD-GLGEYTCTCLEGFEGKNCEL-FTRKLCSLDNGDCDQ--FCHEEQNS--VVCSCARGY  110 (195)
T ss_dssp             ------------------------------------------CCGGGTGGGGCSS--EEEEETTE--EEEECCTTE
T ss_pred             CCcccCCCCCCCCCEeEC-CCCCeeEeCCCCceeccccc-cccccccCCCCCCCC--EeECCCCC--eEEECCCCc
Confidence            678888889999999998 88999999999999999984 46 78876 346766  99999998  899999997

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.98  E-value=2e-10  Score=73.92  Aligned_cols=90  Identities=22%  Similarity=0.492  Sum_probs=65.0

Q ss_pred             CCcccccCCCCCCCCceeecC-CCCc-----------cccCcCC----CCCCCCCCCEEecCCCCeeEeCCCCCc---CC
Q psy9688          14 SDINECETVKDVCNYGICVNT-NGNG-----------NSKVDHC----LTDPCLGHGTCINRSDRYQCLCTPRYS---GN   74 (181)
Q Consensus        14 ~~~~~c~~~~~~C~~~~C~~~-~~~~-----------~~~~~~c----~~~~c~~~~~C~~~~~~~~C~c~~g~~---g~   74 (181)
                      .||++|.  .++| ..+|+++ .++|           ..++++|    ...+|.  +.|++ .+.|.|.|++||+   |.
T Consensus         2 ~dideC~--~~pC-~~~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g~   75 (118)
T 1dx5_I            2 EPVDPCF--RANC-EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDGF   75 (118)
T ss_dssp             CCCCGGG--GCCC-SSEEEECSSSCEEEECCTTEEEETTEEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETTT
T ss_pred             CccccCC--CCCC-CCCCCCCCCCCEEeECCCCccccCCCCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCCC
Confidence            3789997  7899 3499999 8888           1123344    334443  67887 5789999999998   66


Q ss_pred             CCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCC-CCCCCCCEEeeCCCCceEeecCCCCccC
Q psy9688          75 NCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTS-NPCLNDCVCVDDGNLSFYCNCTEDFTGE  142 (181)
Q Consensus        75 ~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~-~~c~~~~~C~~~~~~~~~C~C~~g~~g~  142 (181)
                      .|+ +|++|                             .. .+|  .++|++ ..++|+|.|++||++.
T Consensus        76 ~C~-dideC-----------------------------~~~~~C--~~~C~n-~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           76 ICT-DIDEC-----------------------------ENGGFC--SGVCHN-LPGTFECICGPDSALA  111 (118)
T ss_dssp             EEE-ECCHH-----------------------------HHCSSC--SSEEEE-CSSSEEEEECSSSSCE
T ss_pred             ccc-ccccc-----------------------------CCCCCC--cCeEEe-CCCCEEEECCCCCccC
Confidence            664 55444                             33 456  468998 8999999999999754

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.98  E-value=8.9e-10  Score=82.64  Aligned_cols=73  Identities=30%  Similarity=0.886  Sum_probs=58.0

Q ss_pred             ccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCC
Q psy9688          40 SKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLN  119 (181)
Q Consensus        40 ~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~  119 (181)
                      .++++|...||.++++|++..+.|.|.|++||.|..|+.++++|....                          ..+|.+
T Consensus         3 ~d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~--------------------------~~~C~~   56 (317)
T 3h5c_B            3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPER--------------------------TDGCQH   56 (317)
T ss_dssp             ---CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTC--------------------------TTSCSS
T ss_pred             ccCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCC--------------------------CCCCcC
Confidence            467899999999999999988999999999999999987777774310                          124444


Q ss_pred             CCEEeeCCCCceEeecCCCCcc
Q psy9688         120 DCVCVDDGNLSFYCNCTEDFTG  141 (181)
Q Consensus       120 ~~~C~~~~~~~~~C~C~~g~~g  141 (181)
                        .|++ ..++|.|.|.+||.+
T Consensus        57 --~C~~-~~g~~~C~C~~g~~~   75 (317)
T 3h5c_B           57 --FCLP-GQESYTCSCAQGYRL   75 (317)
T ss_dssp             --EEEC-CSSSCEEECCTTEEC
T ss_pred             --cccc-CCCeeEEeccccccc
Confidence              7888 889999999999985

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.96  E-value=1.2e-10  Score=76.69  Aligned_cols=68  Identities=26%  Similarity=0.735  Sum_probs=22.8

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCC-CCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENS-AACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~-~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +++.|...||.++++|++ ..++|+|.|++||+|..|+. .+ ++|.. +.+|.+  +|+++.++  |.|.|++||
T Consensus        41 d~d~C~~~pC~n~g~C~~-~~~~y~C~C~~G~~G~~C~~-~i~d~C~~~~~~C~~--~C~~~~g~--y~C~C~~Gy  110 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKD-GLGEYTCTCLEGFEGKNCEL-FTRKLCSLDNGDCDQ--FCHEEQNS--VVCSCARGY  110 (134)
T ss_dssp             ------------------------------------------CCGGGTGGGGCSS--EEEEETTE--EEEECCTTE
T ss_pred             CcCcCCCCCCCCcCCccc-CCCCEEeeCCCCccCCcccc-CCCCccccCCCCCCC--EeECCCCC--EEEECCCCc
Confidence            667888888999899998 78899999999999999984 46 77865 345766  99999998  899999997

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.92  E-value=1.4e-09  Score=81.62  Aligned_cols=68  Identities=26%  Similarity=0.747  Sum_probs=58.6

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCC--CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVT--LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~--~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++++|...||.++++|.+ ..+.|.|.|++||.|+.|+. ++++|..  .++|.+  +|+++.++  |.|.|++||
T Consensus         4 d~~~C~~~pC~~~g~C~~-~~~~~~C~C~~g~~g~~C~~-~~~eC~~~~~~~C~~--~C~~~~g~--~~C~C~~g~   73 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQD-SIWGYTCTCSPGYEGSNCEL-AKNECHPERTDGCQH--FCLPGQES--YTCSCAQGY   73 (317)
T ss_dssp             --CCTTSCCCTTTCCCCC-CSSSCCCCCSSSCCSSSSCC-CSSSCCTTCTTSCSS--EEECCSSS--CEEECCTTE
T ss_pred             cCCcCCCCCCCCCCEeEC-CCCCeEEECCCCCcCCcccc-CcccCCCCCCCCCcC--ccccCCCe--eEEeccccc
Confidence            567888889999999998 78899999999999999986 8899975  268987  99999998  889999986

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.89  E-value=4.7e-10  Score=70.81  Aligned_cols=54  Identities=26%  Similarity=0.696  Sum_probs=22.0

Q ss_pred             CEEeeCCCCceEeecCCCCcc---CCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         121 CVCVDDGNLSFYCNCTEDFTG---EYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       121 ~~C~~~~~~~~~C~C~~g~~g---~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++|++ ..++|.|.|++||.+   ..|+  ++++|...++|.  ++|+++.++  |.|.|++||
T Consensus        41 ~~C~n-~~g~y~C~C~~Gy~g~~g~~C~--dideC~~~~~C~--~~C~n~~gs--y~C~C~~Gy   97 (107)
T 2w2n_E           41 YVCND-LKIGYECLCPDGFQLVAQRRCE--DIDECQDPDTCS--QLCVNLEGG--YKCQCEEGF   97 (107)
T ss_dssp             SEEEC-CSBSCEEECCTTCEEETTTEEE--C---------------------------------
T ss_pred             CEeEe-CCCCeEEECCCCccccCCCccc--cccccCCCCCcC--CeeecCCCC--EEEECCCCc
Confidence            48888 889999999999997   7887  899997446786  599999998  889999987

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.81  E-value=3.1e-09  Score=86.63  Aligned_cols=120  Identities=28%  Similarity=0.629  Sum_probs=85.2

Q ss_pred             CCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCC---------CCCCC----CCCCCcEEee------------CCee
Q psy9688          46 LTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNG---------DCSSN----PCLNDGVCVD------------EVYK  100 (181)
Q Consensus        46 ~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~---------~c~~~----~c~~~~~C~~------------~~~~  100 (181)
                      .+.+|.+++.|...    .|.|.+||+|..|+..++         .|...    +|.+++.|..            ..|.
T Consensus       433 ~s~~Cs~~G~C~~g----~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~G~C~C~~~~~~~~G~~  508 (687)
T 3k6s_B          433 DRSLCHGKGFLECG----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIY  508 (687)
T ss_dssp             CSSTGGGSEEESSS----SEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEETTEEEECCCCSTTCCEE
T ss_pred             CCCCCCCCCEEeCC----EeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeCCEEEcCCCCCCCCCcc
Confidence            34568888888743    899999999999984333         46432    3777776542            2277


Q ss_pred             ccccccCCCCCCCC---CCCCC--CCEEeeCCCCceEeecCCCCccCCcccc-CCCCCCC--CCCCCCCCEEeeCCCCcc
Q psy9688         101 GRYWELPEIRDCTS---NPCLN--DCVCVDDGNLSFYCNCTEDFTGEYCQFE-NSAACVT--LNPCQNNATCVASPGEKQ  172 (181)
Q Consensus       101 g~~c~~~~~~~c~~---~~c~~--~~~C~~~~~~~~~C~C~~g~~g~~c~~~-~~~~c~~--~~~C~~~~~C~~~~g~~~  172 (181)
                      |..|+. +...|..   .+|.+  +++|..     ..|.|.+||+|..|+.. +++.|..  ..+|.++|.|..  +.  
T Consensus       509 G~~Ce~-~~~~C~~~~~~~C~~~~~G~C~~-----g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~--g~--  578 (687)
T 3k6s_B          509 GQYCEC-DTINCERYNGQVCGGPGRGLCFC-----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC--NV--  578 (687)
T ss_dssp             STTSCE-ESSCSCEETTEETSHHHHEEEET-----TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS--SC--
T ss_pred             cccccc-ccccccCCCCcCcCCCCCCeEEC-----CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC--CE--
Confidence            888875 4566763   35877  889964     27999999999999741 2567765  136999999975  33  


Q ss_pred             eEEecCCCC
Q psy9688         173 ITCLCLKEV  181 (181)
Q Consensus       173 ~~C~C~~g~  181 (181)
                        |.|++||
T Consensus       579 --C~C~~Gy  585 (687)
T 3k6s_B          579 --CECHSGY  585 (687)
T ss_dssp             --BCCSTTC
T ss_pred             --EECCCCC
Confidence              9999987

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.79  E-value=2.4e-09  Score=87.28  Aligned_cols=104  Identities=27%  Similarity=0.670  Sum_probs=70.4

Q ss_pred             CCCCCCEEecCCCCeeEeCC------CCCcCCCCCCCCCCCCC---CCCCC--CcEEeeCC------eeccccccC-CCC
Q psy9688          49 PCLGHGTCINRSDRYQCLCT------PRYSGNNCEKDNGDCSS---NPCLN--DGVCVDEV------YKGRYWELP-EIR  110 (181)
Q Consensus        49 ~c~~~~~C~~~~~~~~C~c~------~g~~g~~c~~~~~~c~~---~~c~~--~~~C~~~~------~~g~~c~~~-~~~  110 (181)
                      +|.+++.|+..    .|.|.      +||.|..|+.++..|..   .+|.+  .+.|....      |.|..|..+ ..+
T Consensus       483 ~Cs~~G~C~~G----~C~C~~~~~~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~g~C~C~~G~~G~~Cec~~~~~  558 (687)
T 3k6s_B          483 ICSGLGDCVCG----QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTE  558 (687)
T ss_dssp             GGGSSEEEETT----EEEECCCCSTTCCEESTTSCEESSCSCEETTEETSHHHHEEEETTEEEECTTCCSTTSCSCCSSC
T ss_pred             cCCCCCEEeCC----EEEcCCCCCCCCCccccccccccccccCCCCcCcCCCCCCeEECCEEEcCCCCcCCCCccCCCCC
Confidence            47777788743    78887      88888888755566653   24665  55555332      777777642 245


Q ss_pred             CCCCC---CCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEe
Q psy9688         111 DCTSN---PCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCV  165 (181)
Q Consensus       111 ~c~~~---~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~  165 (181)
                      .|...   +|.++++|..     ..|.|.+||.|..|+.  ...|.  ++|.+++.|+
T Consensus       559 ~C~~~~g~~Cs~~G~C~~-----g~C~C~~Gy~G~~Ce~--c~~C~--~~C~~~g~Cv  607 (687)
T 3k6s_B          559 GCLNPRRVECSGRGRCRC-----NVCECHSGYQLPLCQE--CPGCP--SPCGKYISCA  607 (687)
T ss_dssp             TTBCTTCSBTSSSCCBCS-----SCBCCSTTCCTTTTCC--CTTSC--CCCTTTHHHH
T ss_pred             CCCCCCCCCCCCCCcCCC-----CEEECCCCCcCCCCCC--CCCCC--cccCCCCCCC
Confidence            66543   6888889964     3699999999999973  23462  5788877775

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.78  E-value=4e-09  Score=72.08  Aligned_cols=129  Identities=23%  Similarity=0.629  Sum_probs=86.5

Q ss_pred             CCCCCcccCCCCCCcccccCCCCCC-CCceeecCC-----CCc---cccCcCCCCCCCC-CCCEEecCCCCeeEeCCCCC
Q psy9688           2 YFKPISLSTLCESDINECETVKDVC-NYGICVNTN-----GNG---NSKVDHCLTDPCL-GHGTCINRSDRYQCLCTPRY   71 (181)
Q Consensus         2 ~C~~g~~g~~C~~~~~~c~~~~~~C-~~~~C~~~~-----~~~---~~~~~~c~~~~c~-~~~~C~~~~~~~~C~c~~g~   71 (181)
                      .|.+||.|..|+   ..|.. ...| .++.|....     .+|   ..+.+.|. ..|. .++.|++   .+.|.|.+||
T Consensus        20 ~C~~g~~G~~C~---~~C~~-~~~c~~~g~C~~~g~C~C~~G~~G~~C~~~~C~-~~C~~~~g~C~~---~~~C~C~~G~   91 (169)
T 2vj2_A           20 TCDDYYYGFGCN---KFCRP-RDDFFGHYACDQNGNKTCMEGWMGPECNRAICR-QGCSPKHGSCKL---PGDCRCQYGW   91 (169)
T ss_dssp             -CCTTEETTTTC---EECCC-EEETTEEEEECSSCCEEECTTEESTTSCEECCC-TTCCTTTEECSS---TTCCEECTTE
T ss_pred             eCCCcCcCCCcc---cccCC-CCCcCCCCEeCCCCeeECCCCCcCCCCCCCCCC-CCCCCCCcccCC---CCeeECCCCC
Confidence            488999999996   24552 2345 566664211     223   12224453 3464 5677865   5799999999


Q ss_pred             cCCCCCCCCCCCCCCC-CCCCcEEeeC-------CeeccccccCCCCCCCC-CCCCCCCEEeeCC-CCceEeecCCCCcc
Q psy9688          72 SGNNCEKDNGDCSSNP-CLNDGVCVDE-------VYKGRYWELPEIRDCTS-NPCLNDCVCVDDG-NLSFYCNCTEDFTG  141 (181)
Q Consensus        72 ~g~~c~~~~~~c~~~~-c~~~~~C~~~-------~~~g~~c~~~~~~~c~~-~~c~~~~~C~~~~-~~~~~C~C~~g~~g  141 (181)
                      +|..|+.    |...+ |.++ .|+..       .|.|..|.. ++++|.. .+|.++++|++ . .++|+|.|++||+|
T Consensus        92 ~G~~C~~----C~~~~~C~~g-~C~~~~~C~C~~G~~G~~C~~-~~~~C~~~~~C~~~g~C~~-~~~~~~~C~C~~G~~G  164 (169)
T 2vj2_A           92 QGLYCDK----CIPHPGCVHG-ICNEPWQCLCETNWGGQLCDK-DLNYCGTHQPCLNGGTCSN-TGPDKYQCSCPEGYSG  164 (169)
T ss_dssp             ESSSSCE----ECCCTTCSSE-ECSSTTCCEECTTEETTTTCE-ESCHHHHTCCCCTTCEEEE-CSTTCEEEECCTTCCS
T ss_pred             CCCCccc----CCCCCCCCCC-CcCCCCEEeCCCCCCCCcccC-CCCCCCCCCCCCCCCEEcC-CCCCCcEeECCCCCcC
Confidence            9999863    33333 5432 55422       188888875 5677764 78999999998 5 78899999999999


Q ss_pred             CCcc
Q psy9688         142 EYCQ  145 (181)
Q Consensus       142 ~~c~  145 (181)
                      ..|+
T Consensus       165 ~~Ce  168 (169)
T 2vj2_A          165 PNCE  168 (169)
T ss_dssp             TTSC
T ss_pred             cCcC
Confidence            9885

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.73  E-value=3.5e-08  Score=76.70  Aligned_cols=104  Identities=26%  Similarity=0.662  Sum_probs=67.0

Q ss_pred             CCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCC-CCCCCCCCEEeeCC
Q psy9688          49 PCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCT-SNPCLNDCVCVDDG  127 (181)
Q Consensus        49 ~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~-~~~c~~~~~C~~~~  127 (181)
                      +|.++++|.+  +.+.|.|++||.|..|+...++.               +.|..|.    +.|. ..+|.+.+.|.   
T Consensus       204 ~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g---------------~~g~~C~----~~C~~~~~C~~~g~C~---  259 (423)
T 2gy5_A          204 ACMNNGVCHE--DTGECICPPGFMGRTCEKACELH---------------TFGRTCK----ERCSGQEGCKSYVFCL---  259 (423)
T ss_dssp             CCCTTCEECT--TTCCEECCTTEESTTSCEECCTT---------------EESTTSC----EECCSTTTTTTCCEEE---
T ss_pred             CCCCCCEEEC--CCCcEeCCCCccCCCcccccCCC---------------CCCCCcC----ccCCCCCCCCCCCEEC---
Confidence            6777888865  34678888888888886332211               1111121    1333 34677778884   


Q ss_pred             CCceEeecCCCCccCCcccc-----CCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         128 NLSFYCNCTEDFTGEYCQFE-----NSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       128 ~~~~~C~C~~g~~g~~c~~~-----~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      .+.++|.|.+||.|..|+..     .-..|...-+|.++++|.+..     .|.|++||
T Consensus       260 ~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~-----~C~C~~G~  313 (423)
T 2gy5_A          260 PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ-----GCLCSPGW  313 (423)
T ss_dssp             TTTTEEECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTT-----EEECCTTC
T ss_pred             CCCCeEEeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCC-----ceECCCCC
Confidence            35689999999999988630     012343223688999998664     29999987

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.67  E-value=1.4e-08  Score=78.45  Aligned_cols=64  Identities=25%  Similarity=0.651  Sum_probs=53.9

Q ss_pred             CCCCCCCCCCCEEeeCCCCceEeecCCCCc---cCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         111 DCTSNPCLNDCVCVDDGNLSFYCNCTEDFT---GEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       111 ~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~---g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +|...++...+.|.+ ..++|.|.|++||.   |..|+  ++++|..+++|.+  .|+++.|+  |.|.|.+||
T Consensus         2 eC~~~~~~c~~~C~~-~~~~y~C~C~~G~~~~~~~~C~--dideC~~~~~C~~--~C~n~~g~--~~C~C~~g~   68 (400)
T 3p5b_L            2 ECLDNNGGCSHVCND-LKIGYECLCPDGFQLVAQRRCE--DIDECQDPDTCSQ--LCVNLEGG--YKCQCEEGF   68 (400)
T ss_dssp             CTTTTGGGCSSEEEE-CSSSEEEECCTTEEECSSSCEE--ECCCCSTTSSCSS--CCBCCSSS--CBCCCCTTC
T ss_pred             cccCCCCCCCCEeEC-CCCCeEEECCCCCCcCCCCccc--CchhhhccCCCCC--ccCCCccc--eeeeccccc
Confidence            455555666679999 89999999999998   78897  8999976578876  89999998  889999987

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.66  E-value=3e-08  Score=50.62  Aligned_cols=37  Identities=38%  Similarity=1.043  Sum_probs=34.1

Q ss_pred             cCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      ++++|.+.||.++++|++..+.|.|.|++||+|..|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            5788999999999999998899999999999999886

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.63  E-value=2.8e-08  Score=54.49  Aligned_cols=41  Identities=24%  Similarity=0.671  Sum_probs=33.9

Q ss_pred             ccCcCCCCCCCCCCCEEe-----cCCCCeeEeCCCCCcCCCCCCCC
Q psy9688          40 SKVDHCLTDPCLGHGTCI-----NRSDRYQCLCTPRYSGNNCEKDN   80 (181)
Q Consensus        40 ~~~~~c~~~~c~~~~~C~-----~~~~~~~C~c~~g~~g~~c~~~~   80 (181)
                      .++++|.+.||.++++|+     +..+.|.|.|++||+|..|+..+
T Consensus         6 ~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v   51 (55)
T 3u7u_G            6 VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYV   51 (55)
T ss_dssp             EECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEEC
T ss_pred             ccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccC
Confidence            457889999999999994     55678999999999999998655

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.58  E-value=5.7e-08  Score=53.28  Aligned_cols=38  Identities=26%  Similarity=0.712  Sum_probs=28.8

Q ss_pred             CCCCCCCCCCCCCCEE-----eeCCCCceEeecCCCCccCCccc
Q psy9688         108 EIRDCTSNPCLNDCVC-----VDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C-----~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ++++|...||.++++|     ++ ..+.|+|.|++||+|+.|+.
T Consensus         7 ~~~eC~s~pC~NgGtC~~~~~~d-~~~~y~C~C~~g~~G~~CE~   49 (55)
T 3u7u_G            7 KCAEKEKTFCVNGGECFMVKDLS-NPSRYLCKCPNEFTGDRCQN   49 (55)
T ss_dssp             ECCSTTTTTSCTTCEEEEECCC---CCCEEEEECTTEESTTSCE
T ss_pred             cCCCCcCCCCCCCCCcCCCCccC-CCCCEeEeCCCCCcCCCcCc
Confidence            4566666677777777     34 56789999999999999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.56  E-value=2.8e-07  Score=76.05  Aligned_cols=54  Identities=26%  Similarity=0.718  Sum_probs=46.8

Q ss_pred             CEEeeCCCCceEeecCCCCc---cCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         121 CVCVDDGNLSFYCNCTEDFT---GEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       121 ~~C~~~~~~~~~C~C~~g~~---g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      .+|++ ..++|.|.|++||.   +..|+  ++++|....+|.+  +|+++.|+  |.|.|++||
T Consensus       306 ~~C~~-~~~~~~C~C~~G~~~~~~~~C~--dideC~~~~~C~~--~C~n~~g~--y~C~C~~G~  362 (699)
T 1n7d_A          306 HVCND-LKIGYECLCPDGFQLVAQRRCE--DIDECQDPDTCSQ--LCVNLEGG--YKCQCEEGF  362 (699)
T ss_dssp             TTCCC-CTTCCCCCCCSSSCCCSSSCCC--CCCCCSSSSSCTT--TCCBCSSC--BCCCCCSSC
T ss_pred             CCccc-CCCCcEEeCCCCeEcCCCCccc--CccccCCCCcccc--ccccCCCC--eeeeeeccc
Confidence            57888 88999999999998   77887  8999975467864  89999999  889999997

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.52  E-value=2.8e-07  Score=50.29  Aligned_cols=41  Identities=32%  Similarity=0.791  Sum_probs=35.1

Q ss_pred             cCcCCCCC---CCCCCCEEe--cCCCCeeEeCCCCCcCCCCCCCCC
Q psy9688          41 KVDHCLTD---PCLGHGTCI--NRSDRYQCLCTPRYSGNNCEKDNG   81 (181)
Q Consensus        41 ~~~~c~~~---~c~~~~~C~--~~~~~~~C~c~~g~~g~~c~~~~~   81 (181)
                      ++++|.+.   ||.++++|+  +..+.|.|.|++||+|..|+..+.
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~   47 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCSC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccCc
Confidence            46788776   999999999  788899999999999999986543

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.50  E-value=2.3e-08  Score=63.03  Aligned_cols=57  Identities=28%  Similarity=0.732  Sum_probs=21.3

Q ss_pred             CEEecCCCCeeEeCCCCCcC---CCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCc
Q psy9688          54 GTCINRSDRYQCLCTPRYSG---NNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLS  130 (181)
Q Consensus        54 ~~C~~~~~~~~C~c~~g~~g---~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~  130 (181)
                      .+|++..+.|.|.|++||.|   ..|+ +|++|..                            ..+|.  ++|++ ..++
T Consensus        41 ~~C~n~~g~y~C~C~~Gy~g~~g~~C~-dideC~~----------------------------~~~C~--~~C~n-~~gs   88 (107)
T 2w2n_E           41 YVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD----------------------------PDTCS--QLCVN-LEGG   88 (107)
T ss_dssp             SEEECCSBSCEEECCTTCEEETTTEEE-C---------------------------------------------------
T ss_pred             CEeEeCCCCeEEECCCCccccCCCccc-cccccCC----------------------------CCCcC--Ceeec-CCCC
Confidence            48999899999999999987   5666 5655531                            12443  47888 8899


Q ss_pred             eEeecCCCCccC
Q psy9688         131 FYCNCTEDFTGE  142 (181)
Q Consensus       131 ~~C~C~~g~~g~  142 (181)
                      |.|.|++||.+.
T Consensus        89 y~C~C~~Gy~~~  100 (107)
T 2w2n_E           89 YKCQCEEGFQLD  100 (107)
T ss_dssp             ------------
T ss_pred             EEEECCCCceEC
Confidence            999999999754

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.49  E-value=2.1e-07  Score=47.41  Aligned_cols=37  Identities=41%  Similarity=0.863  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCcc
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ  145 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~  145 (181)
                      ++++|...||.++++|++ ..+.|+|.|++||+|..|+
T Consensus         2 d~d~C~~~pC~ngg~C~~-~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKD-DINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEE-ETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEc-CCCceEeECCCCCcCCccC
Confidence            567888889999999998 8899999999999999885

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.49  E-value=2.5e-08  Score=76.68  Aligned_cols=67  Identities=22%  Similarity=0.506  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCc----cCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFT----GEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~----g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++++|...++.....|.+ ..++|.|.|++||.    |+.|.  ++++|...++|.+  .|+++.|+  |.|.|++||
T Consensus         2 ~~~~C~~~~~~c~~~C~~-~~g~~~C~C~~G~~l~~~~~~C~--d~~eC~~~~~C~~--~C~~~~g~--~~C~C~~g~   72 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQM-IRGAVQCTCHTGYRLTEDGRTCQ--DVNECAEEGYCSQ--GCTNSEGA--FQCWCEAGY   72 (386)
T ss_dssp             -----------------------------------------------------CCTT--EEC-------CCEECCTTE
T ss_pred             CcCcccCCCCCCCCCCcC-CCCCcEeECCCCceECCCCCccC--ccceeCCcCcccC--cCCCCCCC--CeEEECCCc
Confidence            346666555444458877 78889999999998    88896  8999974478986  59999999  889999986

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.46  E-value=4.7e-09  Score=70.09  Aligned_cols=39  Identities=33%  Similarity=0.669  Sum_probs=28.1

Q ss_pred             ccccccCCCCCCCCC--CCCCCCEEeeCCCCceEeecCCCCccCC
Q psy9688         101 GRYWELPEIRDCTSN--PCLNDCVCVDDGNLSFYCNCTEDFTGEY  143 (181)
Q Consensus       101 g~~c~~~~~~~c~~~--~c~~~~~C~~~~~~~~~C~C~~g~~g~~  143 (181)
                      |..|.  ++++|...  +|.+ ++|++ ..++|+|.|++||++..
T Consensus       101 g~~C~--dideC~~~~~~C~~-g~C~n-~~g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A          101 GTQCE--DIDECEVFPGVCKN-GLCVN-TRGSFKCQCPSGMTLDA  141 (147)
T ss_dssp             TTEEE--ECCHHHHSTTCSSS-SEEEE-ETTEEEEECCTTCCBCT
T ss_pred             CCccC--ccccccCCCCCCCC-CEEEC-CCCCEEeeCCCCCccCC
Confidence            44444  55666533  4774 59999 89999999999998653

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.42  E-value=3.1e-07  Score=48.34  Aligned_cols=37  Identities=30%  Similarity=0.721  Sum_probs=31.4

Q ss_pred             CCCCC---CCCCCCEEe--cCCCCeeEeCCCCCcCCCCCCCC
Q psy9688          44 HCLTD---PCLGHGTCI--NRSDRYQCLCTPRYSGNNCEKDN   80 (181)
Q Consensus        44 ~c~~~---~c~~~~~C~--~~~~~~~C~c~~g~~g~~c~~~~   80 (181)
                      +|.+.   ||.++++|+  +..+.|.|.|++||+|..|+.++
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTCEEC
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCccc
Confidence            46666   999999998  67788999999999999998554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.41  E-value=1.8e-07  Score=72.27  Aligned_cols=68  Identities=26%  Similarity=0.711  Sum_probs=51.5

Q ss_pred             cCCCCCCCCCCCEEecCCCCeeEeCCCCCc---CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYS---GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLN  119 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~---g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~  119 (181)
                      ++|...++...+.|++..++|.|.|++||.   |..|+ ++++|..                            ..+|..
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~-dideC~~----------------------------~~~C~~   51 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD----------------------------PDTCSQ   51 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEE-ECCCCST----------------------------TSSCSS
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCccc-Cchhhhc----------------------------cCCCCC
Confidence            467766766667999999999999999998   67775 6666641                            123432


Q ss_pred             CCEEeeCCCCceEeecCCCCccC
Q psy9688         120 DCVCVDDGNLSFYCNCTEDFTGE  142 (181)
Q Consensus       120 ~~~C~~~~~~~~~C~C~~g~~g~  142 (181)
                        .|++ ..++|.|.|.+||.+.
T Consensus        52 --~C~n-~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L           52 --LCVN-LEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             --CCBC-CSSSCBCCCCTTCCCC
T ss_pred             --ccCC-Cccceeeecccccccc
Confidence              6777 8899999999999743

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.34  E-value=6.2e-07  Score=74.87  Aligned_cols=54  Identities=26%  Similarity=0.718  Sum_probs=46.5

Q ss_pred             CEEeeCCCCceEeecCCCCc---cCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         121 CVCVDDGNLSFYCNCTEDFT---GEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       121 ~~C~~~~~~~~~C~C~~g~~---g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ..|++ ..++|.|.|++||.   |..|.  ++++|..+..|.+  +|+++.|+  |.|.|++||
T Consensus       324 ~~C~~-~~~~y~C~C~~Gy~l~~g~~C~--dideC~~~~~C~~--~C~n~~gs--y~C~C~~Gy  380 (791)
T 3m0c_C          324 HVCND-LKIGYECLCPDGFQLVAQRRCE--DIDECQDPDTCSQ--LCVNLEGG--YKCQCEEGF  380 (791)
T ss_dssp             SEEEE-CSBSEEEECCTTCEEETTTEEE--CCCCCSSSSSCTT--TCCBCSSC--BCCCCCSSE
T ss_pred             ccccC-CCCCcccCCCCCCccCCCCccc--cCcccCCCCCCCC--eeecCCCC--ceeecCCCC
Confidence            48999 89999999999995   78887  8999975466754  89999999  889999987

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.33  E-value=3e-07  Score=65.04  Aligned_cols=102  Identities=27%  Similarity=0.542  Sum_probs=68.8

Q ss_pred             CCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCC
Q psy9688          48 DPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDG  127 (181)
Q Consensus        48 ~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~  127 (181)
                      ..|..+++|+..    .|.|.+||+|..|+........ ++           ....|.    ......+|.++++|+.  
T Consensus        96 ~~Csg~G~C~~g----~C~C~~G~~G~~Cec~~~~~~~-~~-----------~~~~C~----~~~~~~~Csg~G~C~~--  153 (217)
T 2p28_B           96 SLCHGKGFLECG----ICRCDTGYIGKNCECQTQGRSS-QE-----------LEGSCR----KDNNSIICSGLGDCVC--  153 (217)
T ss_dssp             CTTTTSEEEETT----EEEECTTEESTTSCEECCCCC--GG-----------GGGGGB----SSTTSCBGGGTEEEET--
T ss_pred             CccCCCceEECC----EEECCCCccCCcccccCccccc-cc-----------CCCcCC----CCCCCCCCCCCCEEeC--
Confidence            458889999863    8999999999999733221100 00           011122    1112356888899974  


Q ss_pred             CCceEeecCCC------CccCCccccCCCCCCCC--CCCCCC--CEEeeCCCCcceEEecCCCC
Q psy9688         128 NLSFYCNCTED------FTGEYCQFENSAACVTL--NPCQNN--ATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       128 ~~~~~C~C~~g------~~g~~c~~~~~~~c~~~--~~C~~~--~~C~~~~g~~~~~C~C~~g~  181 (181)
                         ..|.|.+|      |+|..|+. ++..|...  .+|..+  |+|..  +    .|.|.+||
T Consensus       154 ---g~C~C~~gw~~~~~~~G~~Ce~-~~~~C~~~~g~~C~~~~~G~C~~--g----~C~C~~G~  207 (217)
T 2p28_B          154 ---GQCLCHTSDVPGKLIYGQYCEC-DTINCERYNGQVCGGPGRGLCFC--G----KCRCHPGF  207 (217)
T ss_dssp             ---TEEEECCCCSTTCCEESTTSCE-ESSCSCEETTEETTCTTTEEEET--T----EEEECTTE
T ss_pred             ---CceECCCCCCCcccEECCCccc-CCccCCCCCCCCCCCCCCcEEeC--C----eeECCCCC
Confidence               26999999      68999986 56778651  268887  99984  3    49999987

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.32  E-value=1.2e-07  Score=72.83  Aligned_cols=73  Identities=22%  Similarity=0.593  Sum_probs=16.2

Q ss_pred             cCcCCCCCCCCCCCEEecCCCCeeEeCCCCCc----CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCC
Q psy9688          41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYS----GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNP  116 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~----g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~  116 (181)
                      ++++|...++.....|.+..++|.|.|++||.    |..|+ ++++|..                            ..+
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~-d~~eC~~----------------------------~~~   52 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQ-DVNECAE----------------------------EGY   52 (386)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccC-ccceeCC----------------------------cCc
Confidence            56788766644445898888899999999998    77774 6666631                            123


Q ss_pred             CCCCCEEeeCCCCceEeecCCCCc----cCCcc
Q psy9688         117 CLNDCVCVDDGNLSFYCNCTEDFT----GEYCQ  145 (181)
Q Consensus       117 c~~~~~C~~~~~~~~~C~C~~g~~----g~~c~  145 (181)
                      |..  .|++ ..++|.|.|.+||.    +..|.
T Consensus        53 C~~--~C~~-~~g~~~C~C~~g~~l~~d~~~C~   82 (386)
T 3v65_B           53 CSQ--GCTN-SEGAFQCWCEAGYELRPDRRSCK   82 (386)
T ss_dssp             CTT--EEC------CCEECCTTEEECTTSSCEE
T ss_pred             ccC--cCCC-CCCCCeEEECCCceEcCCCCeEC
Confidence            433  4887 88999999999997    66665

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.32  E-value=6.4e-08  Score=65.58  Aligned_cols=68  Identities=24%  Similarity=0.710  Sum_probs=47.0

Q ss_pred             CCCCCCC-CCCCCCCEEeeCCCCceEeecCCCCc----cCCccccCCCC--CCC-CCCC--CCCCEEeeCCC----Ccce
Q psy9688         108 EIRDCTS-NPCLNDCVCVDDGNLSFYCNCTEDFT----GEYCQFENSAA--CVT-LNPC--QNNATCVASPG----EKQI  173 (181)
Q Consensus       108 ~~~~c~~-~~c~~~~~C~~~~~~~~~C~C~~g~~----g~~c~~~~~~~--c~~-~~~C--~~~~~C~~~~g----~~~~  173 (181)
                      ++++|+. .+|. +++|++ ..++|+|.|++||.    |..|+  ++++  |.. .++|  ..+++|+++.+    +  |
T Consensus         2 dideC~~~~~C~-~~~C~n-~~gsy~C~C~~Gy~~~~~g~~C~--d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~--~   75 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVN-TPGSYICDCPPDFELNPTRVGCV--DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSK--A   75 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEE-ETTEEEEECCTTCEECTTSSBEE--CCCCEEEEEEC----------CEEEEEEEECH--H
T ss_pred             ccccCCCCCCCC-CCEeEC-CCCCEEEeCCCCCeECCCCCccc--CCCCCcccCCCcccCCCCCCcccCCcCCcccC--c
Confidence            5677774 6786 689999 89999999999998    78887  6665  754 2334  35778988776    5  6


Q ss_pred             EEecCCCC
Q psy9688         174 TCLCLKEV  181 (181)
Q Consensus       174 ~C~C~~g~  181 (181)
                      .|.|++||
T Consensus        76 ~C~C~~G~   83 (162)
T 1uzk_A           76 SCCCSLGK   83 (162)
T ss_dssp             HHHTTTCC
T ss_pred             eeeCCCCC
Confidence            78888876

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.28  E-value=2.2e-07  Score=52.70  Aligned_cols=42  Identities=24%  Similarity=0.611  Sum_probs=35.6

Q ss_pred             cCCCCCCCCCCCEEec-----CCCCeeEeCCCCCcCCCCCCCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCIN-----RSDRYQCLCTPRYSGNNCEKDNGDCS   84 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~-----~~~~~~C~c~~g~~g~~c~~~~~~c~   84 (181)
                      ++|.+.||.++++|++     ..+.|.|.|++||+|..|+.+++++.
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~   53 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKV   53 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSC
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccc
Confidence            5666789999999986     56789999999999999987777664

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.26  E-value=6.8e-06  Score=63.86  Aligned_cols=110  Identities=25%  Similarity=0.661  Sum_probs=71.1

Q ss_pred             CCCCCcccCCCCCCcccccCCCCCC-CCceeecCCC------Cc----ccc-C----------cCCC-CCCCCCCCEEec
Q psy9688           2 YFKPISLSTLCESDINECETVKDVC-NYGICVNTNG------NG----NSK-V----------DHCL-TDPCLGHGTCIN   58 (181)
Q Consensus         2 ~C~~g~~g~~C~~~~~~c~~~~~~C-~~~~C~~~~~------~~----~~~-~----------~~c~-~~~c~~~~~C~~   58 (181)
                      .|.+||.|..|+.   .|    .+| +++.|.+..+      +|    +.. .          ++|. ..+|.+++.|. 
T Consensus       188 ~C~~g~~G~~C~~---~C----~~C~~~G~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~-  259 (423)
T 2gy5_A          188 RCEAQKWGPECNH---LC----TACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL-  259 (423)
T ss_dssp             SSCTTEESTTSCE---EC----CCCCTTCEECTTTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEE-
T ss_pred             cCCCCCCCCCCCC---CC----CCCCCCCEEECCCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEEC-
Confidence            4889999999962   34    267 7788876332      12    221 1          1332 34577777785 


Q ss_pred             CCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCceEeecCCC
Q psy9688          59 RSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSFYCNCTED  138 (181)
Q Consensus        59 ~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g  138 (181)
                       .+.+.|.|.+||.|..|+.   .|.+.            |.|..|..    .|   +|.++++|.+ ..   .|.|.+|
T Consensus       260 -~~~~~C~C~~G~~G~~C~~---~C~~G------------~~G~~C~~----~C---~C~ngg~C~~-~~---~C~C~~G  312 (423)
T 2gy5_A          260 -PDPYGCSCATGWKGLQCNE---ACHPG------------FYGPDCKL----RC---SCNNGEMCDR-FQ---GCLCSPG  312 (423)
T ss_dssp             -TTTTEEECCBTCBSGGGCB---CCCTT------------BCSBTTCC----BC---CCTTCCEEET-TT---EEECCTT
T ss_pred             -CCCCeEEeCCCcccccccC---ccCCC------------CcCCcccc----cc---cCCCCCEecC-CC---ceECCCC
Confidence             4578999999999999973   23211            22333331    22   5888889976 33   3999999


Q ss_pred             CccCCccc
Q psy9688         139 FTGEYCQF  146 (181)
Q Consensus       139 ~~g~~c~~  146 (181)
                      |+|..|+.
T Consensus       313 ~~G~~Ce~  320 (423)
T 2gy5_A          313 WQGLQCER  320 (423)
T ss_dssp             CBSTTSCB
T ss_pred             CcCCCCcc
Confidence            99999975

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.26  E-value=1.9e-06  Score=46.89  Aligned_cols=38  Identities=37%  Similarity=0.842  Sum_probs=32.1

Q ss_pred             CCCCCCCC---CCCCCCEEe--eCCCCceEeecCCCCccCCccc
Q psy9688         108 EIRDCTSN---PCLNDCVCV--DDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       108 ~~~~c~~~---~c~~~~~C~--~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ++++|...   ||.++++|+  + ..+.|.|.|++||+|..|+.
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~-~~~~~~C~C~~G~~G~~Ce~   44 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIE-SLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEES-SSSCEEEECCTTCCSSSSCC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeC-CCCCEEEECCCCCcCCcCCc
Confidence            34667665   899999998  6 78899999999999999985

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.21  E-value=1.2e-07  Score=53.18  Aligned_cols=38  Identities=26%  Similarity=0.656  Sum_probs=33.8

Q ss_pred             ccCcCCCCCCCCCC--CEEecCCCCeeEeCCCCCc-CCCCC
Q psy9688          40 SKVDHCLTDPCLGH--GTCINRSDRYQCLCTPRYS-GNNCE   77 (181)
Q Consensus        40 ~~~~~c~~~~c~~~--~~C~~~~~~~~C~c~~g~~-g~~c~   77 (181)
                      .++++|.+.||.++  ++|++..+.|.|.|++||+ |..|+
T Consensus         9 ~~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~   49 (61)
T 2k2s_B            9 ETPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGT   49 (61)
T ss_dssp             TSCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSS
T ss_pred             CCCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCC
Confidence            45677888999988  8999999999999999999 99987

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.13  E-value=7.2e-06  Score=67.70  Aligned_cols=56  Identities=29%  Similarity=0.764  Sum_probs=42.2

Q ss_pred             CEEecCCCCeeEeCCCCCc---CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCc
Q psy9688          54 GTCINRSDRYQCLCTPRYS---GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLS  130 (181)
Q Consensus        54 ~~C~~~~~~~~C~c~~g~~---g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~  130 (181)
                      +.|++..++|.|.|++||.   +..|+ ++++|..                            ..+|.  .+|++ ..++
T Consensus       306 ~~C~~~~~~~~C~C~~G~~~~~~~~C~-dideC~~----------------------------~~~C~--~~C~n-~~g~  353 (699)
T 1n7d_A          306 HVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD----------------------------PDTCS--QLCVN-LEGG  353 (699)
T ss_dssp             TTCCCCTTCCCCCCCSSSCCCSSSCCC-CCCCCSS----------------------------SSSCT--TTCCB-CSSC
T ss_pred             CCcccCCCCcEEeCCCCeEcCCCCccc-CccccCC----------------------------CCccc--ccccc-CCCC
Confidence            4788888899999999998   66676 6666631                            12332  36778 8899


Q ss_pred             eEeecCCCCcc
Q psy9688         131 FYCNCTEDFTG  141 (181)
Q Consensus       131 ~~C~C~~g~~g  141 (181)
                      |+|.|.+||.+
T Consensus       354 y~C~C~~G~~~  364 (699)
T 1n7d_A          354 YKCQCEEGFQL  364 (699)
T ss_dssp             BCCCCCSSCBC
T ss_pred             eeeeeeccccc
Confidence            99999999973

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.13  E-value=1.3e-06  Score=69.84  Aligned_cols=71  Identities=23%  Similarity=0.422  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCCCEEeeC---CCCceEeecCCCCccCCccc---------cCCCCCCCCCCCCCCCEEeeCCCCcceEEec
Q psy9688         110 RDCTSNPCLNDCVCVDD---GNLSFYCNCTEDFTGEYCQF---------ENSAACVTLNPCQNNATCVASPGEKQITCLC  177 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~---~~~~~~C~C~~g~~g~~c~~---------~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C  177 (181)
                      ..|..-+|...++|.+.   ....+.|.|.+||.|..|+.         ..++.|.. .+|.+++.+...-......|.|
T Consensus       436 ~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~-C~C~~~gs~~~~C~~~tG~C~C  514 (525)
T 4aqs_A          436 YGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRP-CDCDLGGALNNSCSEDSGQCSC  514 (525)
T ss_dssp             TSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC----------------------------------------
T ss_pred             CCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcC-CCCCCCCccCCccCCCCCeeEC
Confidence            34444445554444320   12345799999999999852         13455655 6677777665432221245999


Q ss_pred             CCCC
Q psy9688         178 LKEV  181 (181)
Q Consensus       178 ~~g~  181 (181)
                      ++||
T Consensus       515 ~~G~  518 (525)
T 4aqs_A          515 LPHM  518 (525)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            9997

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.11  E-value=1.8e-06  Score=45.46  Aligned_cols=37  Identities=32%  Similarity=0.805  Sum_probs=30.5

Q ss_pred             cCcCCCC---CCCCCCCEEecC--CCCeeEeCCCCCcCCCCCC
Q psy9688          41 KVDHCLT---DPCLGHGTCINR--SDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        41 ~~~~c~~---~~c~~~~~C~~~--~~~~~C~c~~g~~g~~c~~   78 (181)
                      ++++|.+   .||.+ ++|+..  .+.|.|.|++||+|..|+.
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence            4577877   89998 899864  3679999999999999973

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.11  E-value=3.3e-06  Score=44.30  Aligned_cols=30  Identities=37%  Similarity=0.788  Sum_probs=26.5

Q ss_pred             CCCCCCEEe--eCCCCceEeecCCCCccCCccc
Q psy9688         116 PCLNDCVCV--DDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       116 ~c~~~~~C~--~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ||.++++|+  + ..+.|+|.|++||+|..|+.
T Consensus        10 pC~ngg~C~~~~-~~~~~~C~C~~G~~G~~Ce~   41 (45)
T 1a3p_A           10 YCLNGGVXMHIE-SLDSYTCNCVIGYSGDRCQT   41 (45)
T ss_dssp             CCSSSCEEEECT-TTSSEEEECCTTEETTTTCE
T ss_pred             CCCCCCEEEeec-CCCCEEEEcCCCCcCCcCCc
Confidence            888889997  5 67889999999999999975

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.11  E-value=5e-07  Score=50.59  Aligned_cols=37  Identities=24%  Similarity=0.641  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCC--CEEeeCCCCceEeecCCCCc-cCCcc
Q psy9688         108 EIRDCTSNPCLND--CVCVDDGNLSFYCNCTEDFT-GEYCQ  145 (181)
Q Consensus       108 ~~~~c~~~~c~~~--~~C~~~~~~~~~C~C~~g~~-g~~c~  145 (181)
                      .+++|...||.++  ++|++ ..++|.|.|++||+ |..|+
T Consensus        10 ~~d~C~snPC~nga~gtC~~-~~g~y~C~C~~Gy~~G~~C~   49 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKE-TNSGYICRCNQGYRISLDGT   49 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEE-CSSEEEEECCTTEEEEECSS
T ss_pred             CCCcCcCCCCcCCCcccccc-CCCceEeECCCCCccCCCCC
Confidence            5677888899988  79999 88999999999999 99887

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.08  E-value=5.6e-06  Score=69.18  Aligned_cols=54  Identities=30%  Similarity=0.828  Sum_probs=41.2

Q ss_pred             EEecCCCCeeEeCCCCCc---CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCCEEeeCCCCce
Q psy9688          55 TCINRSDRYQCLCTPRYS---GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVCVDDGNLSF  131 (181)
Q Consensus        55 ~C~~~~~~~~C~c~~g~~---g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~~C~~~~~~~~  131 (181)
                      .|++..++|.|.|++||.   |..|+ ++++|..                            ..+|.  .+|++ ..++|
T Consensus       325 ~C~~~~~~y~C~C~~Gy~l~~g~~C~-dideC~~----------------------------~~~C~--~~C~n-~~gsy  372 (791)
T 3m0c_C          325 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD----------------------------PDTCS--QLCVN-LEGGY  372 (791)
T ss_dssp             EEEECSBSEEEECCTTCEEETTTEEE-CCCCCSS----------------------------SSSCT--TTCCB-CSSCB
T ss_pred             cccCCCCCcccCCCCCCccCCCCccc-cCcccCC----------------------------CCCCC--Ceeec-CCCCc
Confidence            899999999999999995   66676 6666631                            11232  36888 88999


Q ss_pred             EeecCCCCc
Q psy9688         132 YCNCTEDFT  140 (181)
Q Consensus       132 ~C~C~~g~~  140 (181)
                      .|.|.+||.
T Consensus       373 ~C~C~~Gy~  381 (791)
T 3m0c_C          373 KCQCEEGFQ  381 (791)
T ss_dssp             CCCCCSSEE
T ss_pred             eeecCCCCE
Confidence            999999996

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.90  E-value=9.9e-06  Score=42.60  Aligned_cols=38  Identities=32%  Similarity=0.734  Sum_probs=29.0

Q ss_pred             CCCCCCC---CCCCCCCEEeeC-CCCceEeecCCCCccCCccc
Q psy9688         108 EIRDCTS---NPCLNDCVCVDD-GNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       108 ~~~~c~~---~~c~~~~~C~~~-~~~~~~C~C~~g~~g~~c~~  146 (181)
                      .+++|..   .||.+ ++|+.. ..+.|.|.|++||+|+.|+.
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence            3456666   68888 799751 23689999999999999974

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.81  E-value=6.8e-06  Score=46.40  Aligned_cols=43  Identities=26%  Similarity=0.536  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCEEee----CCCCceEeecCCCCccCCccccCCCCCC
Q psy9688         110 RDCTSNPCLNDCVCVD----DGNLSFYCNCTEDFTGEYCQFENSAACV  153 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~----~~~~~~~C~C~~g~~g~~c~~~~~~~c~  153 (181)
                      ++|...||.++++|++    ...+.|.|.|++||+|..|+. +++.+.
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~-~i~~~~   53 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE-NVPMKV   53 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCE-ECCSSC
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCc-CcCccc
Confidence            4566678988899974    145789999999999999986 666654

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=97.76  E-value=1.7e-05  Score=56.08  Aligned_cols=65  Identities=32%  Similarity=0.724  Sum_probs=45.9

Q ss_pred             CCCCCCCCEEecCCCCeeEeCCCC------CcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCC
Q psy9688          47 TDPCLGHGTCINRSDRYQCLCTPR------YSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLND  120 (181)
Q Consensus        47 ~~~c~~~~~C~~~~~~~~C~c~~g------~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~  120 (181)
                      ..+|.++++|+..    .|.|.+|      |+|..|+.++..|...                          ...+|..+
T Consensus       142 ~~~Csg~G~C~~g----~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~--------------------------~g~~C~~~  191 (217)
T 2p28_B          142 SIICSGLGDCVCG----QCLCHTSDVPGKLIYGQYCECDTINCERY--------------------------NGQVCGGP  191 (217)
T ss_dssp             SCBGGGTEEEETT----EEEECCCCSTTCCEESTTSCEESSCSCEE--------------------------TTEETTCT
T ss_pred             CCCCCCCCEEeCC----ceECCCCCCCcccEECCCcccCCccCCCC--------------------------CCCCCCCC
Confidence            4678889999854    8999999      5788887444344211                          01145555


Q ss_pred             --CEEeeCCCCceEeecCCCCccCCccc
Q psy9688         121 --CVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       121 --~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                        ++|..     ..|.|.+||+|..|+.
T Consensus       192 ~~G~C~~-----g~C~C~~G~~G~~C~~  214 (217)
T 2p28_B          192 GRGLCFC-----GKCRCHPGFEGSACQH  214 (217)
T ss_dssp             TTEEEET-----TEEEECTTEESTTSCE
T ss_pred             CCcEEeC-----CeeECCCCCccCCcCC
Confidence              78864     2799999999999974

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.63  E-value=2.3e-05  Score=42.53  Aligned_cols=33  Identities=33%  Similarity=0.879  Sum_probs=28.6

Q ss_pred             CCCCCCCCEEe--cCCCCeeEeCCCCCcCCCCCCC
Q psy9688          47 TDPCLGHGTCI--NRSDRYQCLCTPRYSGNNCEKD   79 (181)
Q Consensus        47 ~~~c~~~~~C~--~~~~~~~C~c~~g~~g~~c~~~   79 (181)
                      ..||.++++|+  +..+.|.|.|++||+|..|+..
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~   45 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   45 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence            56899999998  6677899999999999999854

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.54  E-value=2.4e-05  Score=52.65  Aligned_cols=43  Identities=28%  Similarity=0.687  Sum_probs=35.6

Q ss_pred             cCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCC
Q psy9688          41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCS   84 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~   84 (181)
                      +.++|.+.+|.++++|++..+.|.|.|++||.|..|+ .+++|.
T Consensus       118 e~~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce-~~~~c~  160 (162)
T 1g1s_A          118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE-YVRDDD  160 (162)
T ss_dssp             EECCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSC-EECC--
T ss_pred             EeCCCcCCCCCCCCEEecCCCCceEeCCCCCcCcccc-cCcccC
Confidence            3467888899999999999999999999999999998 444664

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.40  E-value=9.2e-05  Score=40.08  Aligned_cols=32  Identities=38%  Similarity=0.938  Sum_probs=27.4

Q ss_pred             CCCCCCCCEEe--eCCCCceEeecCCCCccCCccc
Q psy9688         114 SNPCLNDCVCV--DDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       114 ~~~c~~~~~C~--~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ..||.++++|+  + ..+.|.|.|++||+|+.|+.
T Consensus        11 ~~pC~nGG~C~~~~-~~~~~~C~C~~GytG~~Ce~   44 (53)
T 1nql_B           11 DGYCLHDGVCMYIE-ALDKYACNCVVGYIGERCQY   44 (53)
T ss_dssp             CCEECTTCEEEEET-TTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCeEEeeec-CCCCEEEecCCCCcCCCCCc
Confidence            35788889997  5 67789999999999999975

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.35  E-value=0.00056  Score=41.56  Aligned_cols=68  Identities=24%  Similarity=0.559  Sum_probs=48.5

Q ss_pred             CCCCCCCCEEeeCCCCceEeecCCCCc--cCCccccCCCCCCC-CCCCCCCCEEeeCCC---CcceEEecCCCC
Q psy9688         114 SNPCLNDCVCVDDGNLSFYCNCTEDFT--GEYCQFENSAACVT-LNPCQNNATCVASPG---EKQITCLCLKEV  181 (181)
Q Consensus       114 ~~~c~~~~~C~~~~~~~~~C~C~~g~~--g~~c~~~~~~~c~~-~~~C~~~~~C~~~~g---~~~~~C~C~~g~  181 (181)
                      ...|+.++.|.....+...|.|.+||+  |..|.......|+. ...|..++.|+....   +.+..|.|.+||
T Consensus         9 ~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~   82 (99)
T 1ob1_C            9 KKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPD   82 (99)
T ss_dssp             SCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTT
T ss_pred             cCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCC
Confidence            345667788866456889999999998  44565322257876 245999999997753   235899999885

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.32  E-value=2.1e-05  Score=61.91  Aligned_cols=64  Identities=28%  Similarity=0.805  Sum_probs=22.5

Q ss_pred             CcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDC  121 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c~~~~  121 (181)
                      .+.|.. +|.+ ++|++.   +.|.|.+||+|..|+  ++.|                             .. +|.+++
T Consensus       392 ~~~C~~-~C~n-G~C~~~---~~C~C~~G~~G~~C~--~~~C-----------------------------~~-~C~~~g  434 (463)
T 2wg3_C          392 TSECSR-LCRN-GYCTPT---GKCCCSPGWEGDFCR--TAKC-----------------------------EP-ACRHGG  434 (463)
T ss_dssp             CCHHHH-HCCS-EEECTT---SCEEECTTEESTTSC--EECC--------------------------------------
T ss_pred             cccccC-CCCC-CccCCC---CeECCCCCcCCCcCC--cCcC-----------------------------CC-CCCCCC
Confidence            344532 4765 788653   389999999988885  2233                             22 566667


Q ss_pred             EEeeCCCCceEeecCCCCccCCccc
Q psy9688         122 VCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       122 ~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      +|+. .   +.|.|.+||+|..|+.
T Consensus       435 ~C~~-~---~~C~C~~G~~G~~C~~  455 (463)
T 2wg3_C          435 VCVR-P---NKCLCKKGYLGPQCEQ  455 (463)
T ss_dssp             -------------------------
T ss_pred             EECC-C---CEEECCCCcccCCCCC
Confidence            7865 2   5899999999999985

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.24  E-value=0.00029  Score=40.59  Aligned_cols=27  Identities=26%  Similarity=0.736  Sum_probs=23.3

Q ss_pred             CCCCCCC-CCCCCCCCEEeeCCCCcceEEe
Q psy9688         148 NSAACVT-LNPCQNNATCVASPGEKQITCL  176 (181)
Q Consensus       148 ~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~  176 (181)
                      +|++|.. .++|..+++|+|++|+  |.|.
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gs--y~C~   29 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGG--YLCL   29 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCC--EEEE
T ss_pred             ccccccCCCCCCCCCCEeECCCCC--eEec
Confidence            7889975 4679888999999999  8898

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.21  E-value=0.00015  Score=39.09  Aligned_cols=31  Identities=29%  Similarity=0.697  Sum_probs=26.2

Q ss_pred             CCCCCCCEEec----CCCCeeEeCCCCCcCCCCCC
Q psy9688          48 DPCLGHGTCIN----RSDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        48 ~~c~~~~~C~~----~~~~~~C~c~~g~~g~~c~~   78 (181)
                      .||.++++|++    ..+.|.|.|++||+|..|+.
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~   48 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence            47999999986    34579999999999999973

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.17  E-value=0.00036  Score=46.97  Aligned_cols=29  Identities=31%  Similarity=0.814  Sum_probs=23.9

Q ss_pred             CCCCCCEEecCC--CCeeE-eCCCCCcCCCCC
Q psy9688          49 PCLGHGTCINRS--DRYQC-LCTPRYSGNNCE   77 (181)
Q Consensus        49 ~c~~~~~C~~~~--~~~~C-~c~~g~~g~~c~   77 (181)
                      ||.++++|+...  +.++| .|+++|+|..|+
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce   33 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE   33 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSC
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCc
Confidence            577888998654  56899 699999999997

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.15  E-value=0.00022  Score=55.01  Aligned_cols=108  Identities=19%  Similarity=0.427  Sum_probs=26.4

Q ss_pred             CCCC-CEEecCCCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccc---c-CCCCCCC--CCCCCCCCE
Q psy9688          50 CLGH-GTCINRSDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWE---L-PEIRDCT--SNPCLNDCV  122 (181)
Q Consensus        50 c~~~-~~C~~~~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~---~-~~~~~c~--~~~c~~~~~  122 (181)
                      |..+ ..|....+.+.|.|..++.|..|++-..-....++..+..+-........|.   . .....|.  ..+|.++++
T Consensus       299 CnGHas~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t~~C~ngg~  378 (426)
T 3zyj_B          299 CNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGT  378 (426)
T ss_dssp             CSSSCSCEEEETTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC-------------------
T ss_pred             CCCchhhcCCCCCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCcccCCCCCC
Confidence            4433 4687666678999999999999984222221122222111000000000010   0 0012232  237888889


Q ss_pred             EeeCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEeeCCCC
Q psy9688         123 CVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGE  170 (181)
Q Consensus       123 C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~  170 (181)
                      |++ ..   +|.|.+||.|..|+.         ..|.++|+|....|.
T Consensus       379 C~~-~~---~C~C~~G~~G~~Ce~---------c~C~~~g~C~~~~Gq  413 (426)
T 3zyj_B          379 CHN-NV---RCLCPAAYTGILCEK---------LRCEEAGSCGSDSGQ  413 (426)
T ss_dssp             ------------------------------------------------
T ss_pred             cCC-CC---CCcCCCCCcCCCCcC---------CCCCCCCcccCCCCc
Confidence            976 44   899999999998862         356667777766654

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.10  E-value=0.00022  Score=38.41  Aligned_cols=31  Identities=32%  Similarity=0.837  Sum_probs=23.8

Q ss_pred             CCCCCCEEeeC---CCCceEeecCCCCccCCccc
Q psy9688         116 PCLNDCVCVDD---GNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       116 ~c~~~~~C~~~---~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ||.++++|+..   ..+.|.|.|++||+|..|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~   48 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (52)
T ss_dssp             TSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred             cCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence            56777777640   24578999999999999975

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.10  E-value=7.2e-05  Score=58.83  Aligned_cols=51  Identities=31%  Similarity=0.850  Sum_probs=21.8

Q ss_pred             CCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         116 PCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       116 ~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +|.+ ++|+. .   ++|.|.+||+|..|+   +..|..  +|.++++|++.     +.|.|++||
T Consensus       398 ~C~n-G~C~~-~---~~C~C~~G~~G~~C~---~~~C~~--~C~~~g~C~~~-----~~C~C~~G~  448 (463)
T 2wg3_C          398 LCRN-GYCTP-T---GKCCCSPGWEGDFCR---TAKCEP--ACRHGGVCVRP-----NKCLCKKGY  448 (463)
T ss_dssp             HCCS-EEECT-T---SCEEECTTEESTTSC---EECC-----------------------------
T ss_pred             CCCC-CccCC-C---CeECCCCCcCCCcCC---cCcCCC--CCCCCCEECCC-----CEEECCCCc
Confidence            4665 68864 2   379999999999995   356754  89999999854     459999987

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.09  E-value=0.0002  Score=48.07  Aligned_cols=42  Identities=19%  Similarity=0.501  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCCCCCCC
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENSAACVT  154 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~~c~~  154 (181)
                      +.|...+|..+++|++ ..+.|+|.|++||.|..|+  .+++|..
T Consensus       120 ~~c~~~~C~~~g~C~~-~~~~~~c~C~~g~~G~~Ce--~~~~c~~  161 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLE-TIGNYTCSCYPGFYGPECE--YVRDDDD  161 (162)
T ss_dssp             CCCCTTGGGGSEEEEE-CSSSEEEEECTTEESTTSC--EECC---
T ss_pred             CCCcCCCCCCCCEEec-CCCCceEeCCCCCcCcccc--cCcccCC
Confidence            4666778998999999 8899999999999999998  4557754

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.04  E-value=0.00067  Score=36.47  Aligned_cols=30  Identities=23%  Similarity=0.537  Sum_probs=24.1

Q ss_pred             CCCCCCCC---------CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVTL---------NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~~---------~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +|++|...         .+|.+  +|+++.|+  |.|.|++||
T Consensus         3 DidEC~~~~~~~~~~~~~~C~~--~C~n~~Gs--y~C~C~~Gy   41 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQH--LCHNYVGG--YFCSCRPGY   41 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSS--EEEEETTE--EEEECSTTC
T ss_pred             ccccccCcccccccccCCCCCC--EeECCCCC--eEEECCCCC
Confidence            67777641         56864  99999999  899999997

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=97.00  E-value=0.00039  Score=55.53  Aligned_cols=85  Identities=20%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             CcCCCCCCCCCCCEEecC----CCCeeEeCCCCCcCCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCINR----SDRYQCLCTPRYSGNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPC  117 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~~----~~~~~C~c~~g~~g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~~c  117 (181)
                      ...|.+-+|...+.|.+.    ...+.|.|++||.|..|+.    |.+..-.            .   ...++.|..-+|
T Consensus       435 ~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~----C~~G~~g------------~---~~~~~~C~~C~C  495 (525)
T 4aqs_A          435 PYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ----CLPQHWG------------L---SNDLDGCRPCDC  495 (525)
T ss_dssp             TTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC---------------------------------------
T ss_pred             CCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCccc----CCCCccC------------C---CCCCCCCcCCCC
Confidence            344555566666655432    2345899999999999962    3221100            0   002344555556


Q ss_pred             CCCCEEeeC-CCCceEeecCCCCccCCcc
Q psy9688         118 LNDCVCVDD-GNLSFYCNCTEDFTGEYCQ  145 (181)
Q Consensus       118 ~~~~~C~~~-~~~~~~C~C~~g~~g~~c~  145 (181)
                      .+.+.+... ....++|.|++||+|..|+
T Consensus       496 ~~~gs~~~~C~~~tG~C~C~~G~~G~~Ce  524 (525)
T 4aqs_A          496 DLGGALNNSCSEDSGQCSCLPHMIGRQCN  524 (525)
T ss_dssp             -----------------------------
T ss_pred             CCCCccCCccCCCCCeeECCCCCcCCCCC
Confidence            555544320 1233479999999999885

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.98  E-value=0.00061  Score=36.64  Aligned_cols=24  Identities=33%  Similarity=0.720  Sum_probs=20.6

Q ss_pred             CCCCCCCEEecCCCCeeEeCCCCCcC
Q psy9688          48 DPCLGHGTCINRSDRYQCLCTPRYSG   73 (181)
Q Consensus        48 ~~c~~~~~C~~~~~~~~C~c~~g~~g   73 (181)
                      .+|.  +.|++..++|.|.|++||.+
T Consensus        20 ~~C~--~~C~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A           20 PQCQ--HLCHNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             CTTS--SEEEEETTEEEEECSTTCEE
T ss_pred             CCCC--CEeECCCCCeEEECCCCCeE
Confidence            4575  48999999999999999974

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=96.96  E-value=0.004  Score=38.11  Aligned_cols=68  Identities=22%  Similarity=0.457  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCCEEeeCCCCceEeecCCCCc--cCCccccCCCC-CCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         111 DCTSNPCLNDCVCVDDGNLSFYCNCTEDFT--GEYCQFENSAA-CVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       111 ~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~--g~~c~~~~~~~-c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      .|....|..++.|.....+...|.|..||+  |..|..  +.. |.. ...|..++.|+.+.. .+..|.|.++|
T Consensus        12 ~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~--~Np~C~~nNGGCd~nAeC~~~~~-~ki~C~C~~~~   83 (105)
T 1n1i_A           12 KCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVP--ASITCEENNGGCAPEAECTMDDK-KEVECKCTKEG   83 (105)
T ss_dssp             SCCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEE--CCCCTTSGGGGSCTTSEEEECTT-SCEEEECCSTT
T ss_pred             EecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEE--CCcchhhcCCCcCCCcEeEECCC-CEEEeECCCCC
Confidence            343445677788876567888999999998  556764  355 765 345999999997752 35899998874

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.95  E-value=0.0013  Score=42.01  Aligned_cols=32  Identities=34%  Similarity=0.946  Sum_probs=27.1

Q ss_pred             CCCCCCEEecCC--CCe-eEeCCCCCcCCCCCCCC
Q psy9688          49 PCLGHGTCINRS--DRY-QCLCTPRYSGNNCEKDN   80 (181)
Q Consensus        49 ~c~~~~~C~~~~--~~~-~C~c~~g~~g~~c~~~~   80 (181)
                      ||.++++|++..  ..+ .|.|++||+|..|++++
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~   36 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   36 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEES
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccC
Confidence            789999999874  445 99999999999998655

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.85  E-value=0.00036  Score=38.46  Aligned_cols=30  Identities=30%  Similarity=0.778  Sum_probs=25.3

Q ss_pred             CCCCCCEEec----CCCCeeEeCCCCCcCCCCCC
Q psy9688          49 PCLGHGTCIN----RSDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        49 ~c~~~~~C~~----~~~~~~C~c~~g~~g~~c~~   78 (181)
                      +|.++++|+.    ..+.|.|.|++||+|..|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            7999999983    34468999999999999984

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.83  E-value=0.00053  Score=55.03  Aligned_cols=38  Identities=47%  Similarity=0.995  Sum_probs=34.7

Q ss_pred             CcCCCCCCCCCCCEEec-CCCCeeEeCC-CCCcCCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCIN-RSDRYQCLCT-PRYSGNNCEKD   79 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~-~~~~~~C~c~-~g~~g~~c~~~   79 (181)
                      +++|.+.||.++++|++ ..+.|.|.|. +||+|..|+..
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~   41 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIP   41 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCEE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCCC
Confidence            57899999999999999 8889999999 99999999853

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.70  E-value=0.00092  Score=36.35  Aligned_cols=30  Identities=23%  Similarity=0.610  Sum_probs=24.0

Q ss_pred             CEEeeCCCCceEeecCCCCc----cCCccccCCCCCC
Q psy9688         121 CVCVDDGNLSFYCNCTEDFT----GEYCQFENSAACV  153 (181)
Q Consensus       121 ~~C~~~~~~~~~C~C~~g~~----g~~c~~~~~~~c~  153 (181)
                      ..|++ +.++|+|.|++||.    +..|.  ++++|.
T Consensus        13 ~~C~n-t~Gsy~C~C~~Gy~L~~d~~~C~--didec~   46 (55)
T 2jkh_L           13 QFCHE-EQNSVVCSCARGYTLADNGKACI--PTGPYP   46 (55)
T ss_dssp             SEEEE-ETTEEEEECCTTEEECTTSSCEE--ESSSSC
T ss_pred             cEeEc-CCCCeEEeCCCCCEECCCCCeec--cCcccc
Confidence            38999 89999999999996    56676  666653

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.66  E-value=0.00063  Score=37.02  Aligned_cols=38  Identities=24%  Similarity=0.620  Sum_probs=27.6

Q ss_pred             cCCCC--CCCCCCCEEecCCCCeeEeCCCCCc----CCCCCCCCCCC
Q psy9688          43 DHCLT--DPCLGHGTCINRSDRYQCLCTPRYS----GNNCEKDNGDC   83 (181)
Q Consensus        43 ~~c~~--~~c~~~~~C~~~~~~~~C~c~~g~~----g~~c~~~~~~c   83 (181)
                      |+|..  .+|.  ..|+|..++|.|.|++||.    +..|. ++++|
T Consensus         2 dEC~~~~~~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~-didec   45 (55)
T 2jkh_L            2 KLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGKACI-PTGPY   45 (55)
T ss_dssp             CCTTTGGGGCS--SEEEEETTEEEEECCTTEEECTTSSCEE-ESSSS
T ss_pred             ccccCCCCCcC--cEeEcCCCCeEEeCCCCCEECCCCCeec-cCccc
Confidence            45543  3465  3899999999999999997    55665 56555

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.63  E-value=0.0011  Score=53.41  Aligned_cols=37  Identities=35%  Similarity=1.018  Sum_probs=32.9

Q ss_pred             CcCCCCCCCCCCCEEec-CCCCeeEeCC-CCCcCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCIN-RSDRYQCLCT-PRYSGNNCEK   78 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~-~~~~~~C~c~-~g~~g~~c~~   78 (181)
                      +++|.+.||.++++|++ ..+.|.|.|. +||+|..|+.
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   39 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence            47899999999999995 5578999999 9999999984

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.49  E-value=0.0012  Score=36.26  Aligned_cols=31  Identities=32%  Similarity=0.837  Sum_probs=24.7

Q ss_pred             CCCCCCEEeeC---CCCceEeecCCCCccCCccc
Q psy9688         116 PCLNDCVCVDD---GNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       116 ~c~~~~~C~~~---~~~~~~C~C~~g~~g~~c~~  146 (181)
                      +|.++++|...   ....|.|.|++||+|..|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            78888899731   23468999999999999985

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.34  E-value=0.0024  Score=36.40  Aligned_cols=40  Identities=23%  Similarity=0.537  Sum_probs=27.7

Q ss_pred             CCCCCCCC--CCCCCCEEeeCCCC-ceEeecCCCCc----cCCccccCCCCC
Q psy9688         108 EIRDCTSN--PCLNDCVCVDDGNL-SFYCNCTEDFT----GEYCQFENSAAC  152 (181)
Q Consensus       108 ~~~~c~~~--~c~~~~~C~~~~~~-~~~C~C~~g~~----g~~c~~~~~~~c  152 (181)
                      ++++|...  .|.  ..|++ ..+ +|.|.|++||.    ++.|.  ++++|
T Consensus         4 d~~eC~~~nggC~--h~C~n-~~g~s~~C~C~~Gy~L~~D~~tC~--d~dec   50 (69)
T 1kli_L            4 DQLICVNENGGCE--QYCSD-HTGTKRSCRCHEGYSLLADGVSCT--PTVEY   50 (69)
T ss_dssp             CCCCTTSGGGGCS--SEEEE-ETTTEEEEECCTTEEECTTSSCEE--ECSSS
T ss_pred             ccccccCCCCCcC--CEeEc-CCCCCEEEeCCCCCeECCCCCccc--Ccccc
Confidence            44555432  243  48988 787 89999999996    56676  66665

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=96.29  E-value=0.00082  Score=44.68  Aligned_cols=39  Identities=36%  Similarity=0.958  Sum_probs=33.6

Q ss_pred             cCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCC
Q psy9688          41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD   79 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~   79 (181)
                      +.+.|...||.+++.|.+....|.|.|.+||+|..|+++
T Consensus       118 e~~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             EECCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred             CcCCCCCCCCCCCCEeecCCCCeeEECCCCccCcccccc
Confidence            346677788988899999989999999999999999854

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.23  E-value=0.0035  Score=35.94  Aligned_cols=23  Identities=35%  Similarity=0.694  Sum_probs=11.2

Q ss_pred             CCCCCEEecCCCCeeEe-CCCCCc
Q psy9688          50 CLGHGTCINRSDRYQCL-CTPRYS   72 (181)
Q Consensus        50 c~~~~~C~~~~~~~~C~-c~~g~~   72 (181)
                      |...++|+|..++|.|. +..||.
T Consensus        13 C~~~~~C~Nt~Gsy~C~~~~~g~~   36 (71)
T 2kl7_A           13 CKGEMKCINHYGGYLCLPRSAAVI   36 (71)
T ss_dssp             CTTEEEEEETTCCEEEEETTSCCC
T ss_pred             CCCCCEeECCCCCeEecccCCccc
Confidence            44444555555555554 333443

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.18  E-value=0.0019  Score=36.81  Aligned_cols=41  Identities=22%  Similarity=0.599  Sum_probs=28.7

Q ss_pred             ccCcCCCCC--CCCCCCEEecCCC-CeeEeCCCCCc----CCCCCCCCCCC
Q psy9688          40 SKVDHCLTD--PCLGHGTCINRSD-RYQCLCTPRYS----GNNCEKDNGDC   83 (181)
Q Consensus        40 ~~~~~c~~~--~c~~~~~C~~~~~-~~~C~c~~g~~----g~~c~~~~~~c   83 (181)
                      .++++|...  .|.  ..|++..+ +|.|.|++||.    ++.|. +++++
T Consensus         3 ~d~~eC~~~nggC~--h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~-d~dec   50 (69)
T 1kli_L            3 DDQLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY   50 (69)
T ss_dssp             SCCCCTTSGGGGCS--SEEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             cccccccCCCCCcC--CEeEcCCCCCEEEeCCCCCeECCCCCccc-Ccccc
Confidence            356677542  354  47999888 79999999997    55665 55555

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.14  E-value=0.00094  Score=48.75  Aligned_cols=41  Identities=24%  Similarity=0.706  Sum_probs=30.8

Q ss_pred             ccCcCCC--CCCCCCCCEEecCCCCeeEeCCCCCc--CCCCCCCCC
Q psy9688          40 SKVDHCL--TDPCLGHGTCINRSDRYQCLCTPRYS--GNNCEKDNG   81 (181)
Q Consensus        40 ~~~~~c~--~~~c~~~~~C~~~~~~~~C~c~~g~~--g~~c~~~~~   81 (181)
                      .++|+|.  ..+|..++.|+|..++|.|.|.+||.  |..|. +++
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~-d~d   47 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCV-AEG   47 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEE-ETT
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCC-CCC
Confidence            3567775  46788889999999999999999998  66776 444

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.04  E-value=0.0041  Score=50.16  Aligned_cols=37  Identities=41%  Similarity=0.908  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecC-CCCccCCccc
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCT-EDFTGEYCQF  146 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~-~g~~g~~c~~  146 (181)
                      ++|.+.||.++++|++...+.|.|.|. +||+|.+|+.
T Consensus         2 d~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   39 (587)
T 3nt1_A            2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (587)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence            578888999999998413478999999 9999999975

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.92  E-value=0.002  Score=46.99  Aligned_cols=41  Identities=24%  Similarity=0.684  Sum_probs=31.0

Q ss_pred             CCCCCC--CCCCCCCCEEeeCCCCceEeecCCCCc--cCCccccCCCC
Q psy9688         108 EIRDCT--SNPCLNDCVCVDDGNLSFYCNCTEDFT--GEYCQFENSAA  151 (181)
Q Consensus       108 ~~~~c~--~~~c~~~~~C~~~~~~~~~C~C~~g~~--g~~c~~~~~~~  151 (181)
                      ++++|.  ..+|..++.|++ ..++|.|.|.+||.  |..|.  +++.
T Consensus         4 DiDEC~~~~~~C~~~a~C~N-t~Gsy~C~C~~Gy~GnG~~C~--d~d~   48 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRD-YATGFCCRCVANYTGNGRQCV--AEGS   48 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEE-CSSCEEEEECTTEEECSSSEE--ETTC
T ss_pred             cchhccCCCCCCCCCCEeEc-CCCCeEEEcCCCCCCCCCcCC--CCCC
Confidence            567776  457888899999 99999999999998  66676  4444

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=95.86  E-value=0.0043  Score=49.82  Aligned_cols=38  Identities=29%  Similarity=0.837  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCCEEeeCCCCceEeecC-CCCccCCccc
Q psy9688         109 IRDCTSNPCLNDCVCVDDGNLSFYCNCT-EDFTGEYCQF  146 (181)
Q Consensus       109 ~~~c~~~~c~~~~~C~~~~~~~~~C~C~-~g~~g~~c~~  146 (181)
                      ++.|.+.||.++++|++...+.|.|.|. +||+|.+|+.
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence            4678888999999998623678999999 9999999975

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=95.72  E-value=0.016  Score=36.89  Aligned_cols=36  Identities=33%  Similarity=0.984  Sum_probs=26.7

Q ss_pred             CCCCCCEEeeCCC--Cce-EeecCCCCccCCccccCCC-CCC
Q psy9688         116 PCLNDCVCVDDGN--LSF-YCNCTEDFTGEYCQFENSA-ACV  153 (181)
Q Consensus       116 ~c~~~~~C~~~~~--~~~-~C~C~~g~~g~~c~~~~~~-~c~  153 (181)
                      ||.++++|++ ..  ..+ .|.|++||+|+.|+. +++ .|.
T Consensus         2 pC~nggtC~~-~~~~~~~~~C~Cp~g~~G~~Ce~-~~~~~C~   41 (122)
T 2fd6_A            2 DCLNGGTCVS-NKYFSNIHWCNCPKKFGGQHCEI-DKSKTCY   41 (122)
T ss_dssp             CCCSSCEEEE-CTTTTTCEEEECCTTEESTTSCE-ESSCCSB
T ss_pred             CCCCcCCcCC-CcccCCCCCccCCCCCCCccccc-cCcCCCc
Confidence            5788888977 53  445 899999999999986 333 454

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=95.18  E-value=0.0068  Score=32.25  Aligned_cols=28  Identities=14%  Similarity=0.584  Sum_probs=22.4

Q ss_pred             EEeeCCCCceEeecCCCCc----cCCccccCCCCC
Q psy9688         122 VCVDDGNLSFYCNCTEDFT----GEYCQFENSAAC  152 (181)
Q Consensus       122 ~C~~~~~~~~~C~C~~g~~----g~~c~~~~~~~c  152 (181)
                      .|++ ..++|+|.|++||.    +..|.  +++++
T Consensus        11 ~C~n-~~gs~~C~C~~Gy~L~~d~~tC~--dide~   42 (51)
T 1kig_L           11 FCRE-ERSEVRCSCAHGYVLGDDSKSCV--STERF   42 (51)
T ss_dssp             CCCE-ETTEECCCCCTTEEECTTSSCEE--ECSSS
T ss_pred             EeEc-CCCCeEEeCCCCcEECCCCCccc--cCCcc
Confidence            6888 88999999999996    56676  66664

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=95.18  E-value=0.013  Score=31.06  Aligned_cols=30  Identities=30%  Similarity=0.832  Sum_probs=23.7

Q ss_pred             CCCCCCCEEe--cCCCCeeEeCCCCCcCCCCCC
Q psy9688          48 DPCLGHGTCI--NRSDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        48 ~~c~~~~~C~--~~~~~~~C~c~~g~~g~~c~~   78 (181)
                      ..|.+ |+|.  ...+.+.|+|++||+|.+|+.
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~   45 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred             CcccC-CEEEeEcCCCCeEEECCCCcccCCCCe
Confidence            55777 6885  445568999999999999983

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=95.18  E-value=0.0079  Score=35.01  Aligned_cols=35  Identities=34%  Similarity=0.891  Sum_probs=25.6

Q ss_pred             CcCCC---CCCCCCCCEEe--cCCCCeeEeCCCCCcCCCCC
Q psy9688          42 VDHCL---TDPCLGHGTCI--NRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        42 ~~~c~---~~~c~~~~~C~--~~~~~~~C~c~~g~~g~~c~   77 (181)
                      .++|.   ...|.++ .|+  ...+.+.|.|.+||+|..|+
T Consensus        37 ~~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE   76 (79)
T 1xdt_R           37 RDPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCH   76 (79)
T ss_dssp             --CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTTCC
T ss_pred             CCCCCccccCcCCCC-EeeeecCCCCeEEEcCCCccccccc
Confidence            35665   4678875 895  33456899999999999997

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.00  E-value=0.014  Score=31.30  Aligned_cols=29  Identities=24%  Similarity=0.566  Sum_probs=22.9

Q ss_pred             CEEeeCCCC-ceEeecCCCCc----cCCccccCCCCC
Q psy9688         121 CVCVDDGNL-SFYCNCTEDFT----GEYCQFENSAAC  152 (181)
Q Consensus       121 ~~C~~~~~~-~~~C~C~~g~~----g~~c~~~~~~~c  152 (181)
                      ..|++ ..+ +|+|.|++||.    ++.|.  ++++|
T Consensus        11 ~~C~n-~~ggs~~C~C~~Gy~L~~Dg~tC~--d~dec   44 (53)
T 2bz6_L           11 QYCSD-HTGTKRSCRCHEGYSLLADGVSCT--PTVEY   44 (53)
T ss_dssp             SEEEE-ETTTEEEEECCTTEEECTTSSCEE--ECSSS
T ss_pred             CEeEc-CCCCCEEeeCCCCCEECCCCCccc--CCccc
Confidence            37888 777 79999999996    56676  66665

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=94.94  E-value=0.05  Score=33.00  Aligned_cols=69  Identities=25%  Similarity=0.693  Sum_probs=43.6

Q ss_pred             CCCCCCCCCCEEec-CCCCeeEeCCCCCc--CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCC--CCCC
Q psy9688          45 CLTDPCLGHGTCIN-RSDRYQCLCTPRYS--GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSN--PCLN  119 (181)
Q Consensus        45 c~~~~c~~~~~C~~-~~~~~~C~c~~g~~--g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~--~c~~  119 (181)
                      |....|..++.|.+ ..+...|+|.+||.  |..|....                            ...|+..  -|..
T Consensus         7 C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~----------------------------~~sC~~nNGGCd~   58 (99)
T 1ob1_C            7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENP----------------------------NPTCNENNGGCDA   58 (99)
T ss_dssp             CCSCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECS----------------------------CCCSTTGGGGCCT
T ss_pred             eccCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCC----------------------------CCChhhcCCCcCC
Confidence            44556777888886 46688999999998  44444211                            1233321  2556


Q ss_pred             CCEEeeCCC----CceEeecCCCCcc
Q psy9688         120 DCVCVDDGN----LSFYCNCTEDFTG  141 (181)
Q Consensus       120 ~~~C~~~~~----~~~~C~C~~g~~g  141 (181)
                      ++.|+....    +...|.|.+||+-
T Consensus        59 nA~C~~~~~~~~~~ki~C~C~~g~~~   84 (99)
T 1ob1_C           59 DAKCTEEDSGSNGKKITCECTKPDSY   84 (99)
T ss_dssp             TEEEECCSCSSSSCCCEEEECSTTCC
T ss_pred             CceeEecCCcccCCceEeEeCCCCcc
Confidence            667765222    5678999999763

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=94.94  E-value=0.0092  Score=32.02  Aligned_cols=29  Identities=24%  Similarity=0.652  Sum_probs=22.8

Q ss_pred             CEEecCCC-CeeEeCCCCCc----CCCCCCCCCCC
Q psy9688          54 GTCINRSD-RYQCLCTPRYS----GNNCEKDNGDC   83 (181)
Q Consensus        54 ~~C~~~~~-~~~C~c~~g~~----g~~c~~~~~~c   83 (181)
                      ..|++..+ +|.|.|++||.    ++.|. ++++|
T Consensus        11 ~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~-d~dec   44 (53)
T 2bz6_L           11 QYCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY   44 (53)
T ss_dssp             SEEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             CEeEcCCCCCEEeeCCCCCEECCCCCccc-CCccc
Confidence            36999888 69999999997    56665 56655

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=94.91  E-value=0.037  Score=29.25  Aligned_cols=29  Identities=28%  Similarity=0.830  Sum_probs=23.0

Q ss_pred             CCCCCCCEEe--cCCCCeeEeCCCCCcCCCCC
Q psy9688          48 DPCLGHGTCI--NRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        48 ~~c~~~~~C~--~~~~~~~C~c~~g~~g~~c~   77 (181)
                      ..|.+ ++|.  ...+.+.|+|+.||+|.+|+
T Consensus        18 ~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe   48 (50)
T 2rnl_A           18 NFCIH-GECKYIEHLEAVTCKCQQEYFGERCG   48 (50)
T ss_dssp             GTCSS-SEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred             CcCCC-CEEEEecCCCCeeEECCCCccccccc
Confidence            45666 5886  45557899999999999997

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=94.88  E-value=0.0091  Score=39.49  Aligned_cols=36  Identities=28%  Similarity=0.743  Sum_probs=31.2

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ..|...||..++.|.+ ....|.|.|.+||.|..|+.
T Consensus       120 ~~~~~~pc~~~g~C~~-~~~~~~c~C~~g~~g~~Ce~  155 (157)
T 1g1t_A          120 AACTNTSCSGHGECVE-TINNYTCKCDPGFSGLKCEQ  155 (157)
T ss_dssp             CCCCTTGGGGSEEEEE-ETTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCCCCCCEeec-CCCCeeEECCCCccCccccc
Confidence            4566678888899999 88999999999999999974

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=94.87  E-value=0.033  Score=29.44  Aligned_cols=29  Identities=34%  Similarity=0.856  Sum_probs=23.2

Q ss_pred             CCCCCCCEEec--CCCCeeEeCCCCCcCCCCC
Q psy9688          48 DPCLGHGTCIN--RSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        48 ~~c~~~~~C~~--~~~~~~C~c~~g~~g~~c~   77 (181)
                      ..|.++ +|..  ..+.+.|.|++||+|.+|+
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCE   44 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCcccCCC
Confidence            457765 8874  3457899999999999997

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=94.81  E-value=0.0071  Score=32.19  Aligned_cols=28  Identities=18%  Similarity=0.552  Sum_probs=22.1

Q ss_pred             EEecCCCCeeEeCCCCCc----CCCCCCCCCCC
Q psy9688          55 TCINRSDRYQCLCTPRYS----GNNCEKDNGDC   83 (181)
Q Consensus        55 ~C~~~~~~~~C~c~~g~~----g~~c~~~~~~c   83 (181)
                      .|++..++|.|.|++||.    ++.|. +++++
T Consensus        11 ~C~n~~gs~~C~C~~Gy~L~~d~~tC~-dide~   42 (51)
T 1kig_L           11 FCREERSEVRCSCAHGYVLGDDSKSCV-STERF   42 (51)
T ss_dssp             CCCEETTEECCCCCTTEEECTTSSCEE-ECSSS
T ss_pred             EeEcCCCCeEEeCCCCcEECCCCCccc-cCCcc
Confidence            688889999999999997    55665 55554

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=94.58  E-value=0.021  Score=30.23  Aligned_cols=31  Identities=23%  Similarity=0.530  Sum_probs=22.8

Q ss_pred             CCCCCCEEe-eCCCCceEeecCCCCccCCcccc
Q psy9688         116 PCLNDCVCV-DDGNLSFYCNCTEDFTGEYCQFE  147 (181)
Q Consensus       116 ~c~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~  147 (181)
                      .|.+ ++|. ....+.+.|.|++||+|+.|+..
T Consensus        15 yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           15 YCIK-GRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             SCTT-CCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             cccC-CEEEeEcCCCCeEEECCCCcccCCCCee
Confidence            4566 5674 11556789999999999999853

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=93.95  E-value=0.071  Score=36.36  Aligned_cols=32  Identities=31%  Similarity=0.811  Sum_probs=26.0

Q ss_pred             cCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~   78 (181)
                      ..| ..+|.++|.|+.   ...|.|++||.|..|+.
T Consensus       149 ~~C-~~~C~ngG~Cv~---P~~C~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          149 AEC-PGGCRNGGFCNE---RRICECPDGFHGPHCEG  180 (188)
T ss_dssp             CCC-TTCCCTTCEECT---TSCEECCTTCBTTTTCB
T ss_pred             Ccc-CCCCCCCCEeCC---CCcccCcCCCCCCCCcC
Confidence            456 368999999964   34999999999999973

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=93.92  E-value=0.25  Score=30.21  Aligned_cols=68  Identities=19%  Similarity=0.511  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCEEec-CCCCeeEeCCCCCc--CCCCCCCCCCCCCCCCCCCcEEeeCCeeccccccCCCCCCCCC--CCC
Q psy9688          44 HCLTDPCLGHGTCIN-RSDRYQCLCTPRYS--GNNCEKDNGDCSSNPCLNDGVCVDEVYKGRYWELPEIRDCTSN--PCL  118 (181)
Q Consensus        44 ~c~~~~c~~~~~C~~-~~~~~~C~c~~g~~--g~~c~~~~~~c~~~~c~~~~~C~~~~~~g~~c~~~~~~~c~~~--~c~  118 (181)
                      .|...-|..++.|.. ..+...|+|..||.  |..|... +.                            .|..+  -|.
T Consensus        12 ~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~-Np----------------------------~C~~nNGGCd   62 (105)
T 1n1i_A           12 KCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA-SI----------------------------TCEENNGGCA   62 (105)
T ss_dssp             SCCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEEC-CC----------------------------CTTSGGGGSC
T ss_pred             EecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEEC-Cc----------------------------chhhcCCCcC
Confidence            455556778888987 66788999999998  4444421 22                            12221  366


Q ss_pred             CCCEEeeCCCCceEeecCCCCc
Q psy9688         119 NDCVCVDDGNLSFYCNCTEDFT  140 (181)
Q Consensus       119 ~~~~C~~~~~~~~~C~C~~g~~  140 (181)
                      ..+.|+........|.|..+|+
T Consensus        63 ~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           63 PEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             TTSEEEECTTSCEEEECCSTTC
T ss_pred             CCcEeEECCCCEEEeECCCCCC
Confidence            6788876233678899999875

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=93.85  E-value=0.054  Score=41.71  Aligned_cols=38  Identities=29%  Similarity=0.820  Sum_probs=33.3

Q ss_pred             CcCCCCCCCCCCCEEecCCCCeeEeCCC-CCcCCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCINRSDRYQCLCTP-RYSGNNCEKD   79 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~~~~~~~C~c~~-g~~g~~c~~~   79 (181)
                      .+.|.+.||.++++|+...+.|.|.|.. +|.|..|+..
T Consensus       185 ~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~  223 (410)
T 3asi_A          185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP  223 (410)
T ss_dssp             SSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSCEE
T ss_pred             CCCcccccCCCCCEecCCCCCceEeccCCcccCCCCCCC
Confidence            3678889999999999988899999996 9999999743

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=93.43  E-value=0.023  Score=38.26  Aligned_cols=40  Identities=20%  Similarity=0.488  Sum_probs=28.8

Q ss_pred             CCCccCCccccCCCCCCCC-C---CCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         137 EDFTGEYCQFENSAACVTL-N---PCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       137 ~g~~g~~c~~~~~~~c~~~-~---~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      .||.+..... ++++|... .   .|.+  .|+++.|+  |.|.|++||
T Consensus       113 ~Gf~~~~~~~-di~eC~~~~~~~~~C~~--~C~n~~g~--~~C~C~~Gy  156 (170)
T 1szb_A          113 TGFEAFYAAE-DIDECQVAPGEAPTCDH--HCHNHLGG--FYCSCRAGY  156 (170)
T ss_dssp             CEEEEEEEEE-ECCTTCCCTTSCCSSSS--EEEEETTE--EEEECCTTE
T ss_pred             cCceeeeecc-ccCcccCCCCCCCccCC--ccccCCCC--EEEeCCCCc
Confidence            5665544333 67888762 2   2766  89999998  889999987

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=92.97  E-value=0.1  Score=40.15  Aligned_cols=38  Identities=29%  Similarity=0.753  Sum_probs=33.1

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCC-CCccCCccc
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQF  146 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~-g~~g~~c~~  146 (181)
                      ..+.|...||.++++|++ ....|.|.|.. +|.|+.|+.
T Consensus       184 ~~~~C~~~pC~n~g~C~~-~~~~~~C~C~~~~~~G~~C~~  222 (410)
T 3asi_A          184 PSTTCQEDSCSNQGVCLQ-QWDGFSCDCSMTSFSGPLCND  222 (410)
T ss_dssp             CSSCCCTTSSSTTCEEEE-CSSSEEEECTTTSEESTTSCE
T ss_pred             CCCCcccccCCCCCEecC-CCCCceEeccCCcccCCCCCC
Confidence            346788889999999999 88999999996 999999974

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=92.85  E-value=0.068  Score=35.73  Aligned_cols=30  Identities=23%  Similarity=0.678  Sum_probs=22.5

Q ss_pred             CCCCCCEEeeCCC--CceEe-ecCCCCccCCccc
Q psy9688         116 PCLNDCVCVDDGN--LSFYC-NCTEDFTGEYCQF  146 (181)
Q Consensus       116 ~c~~~~~C~~~~~--~~~~C-~C~~g~~g~~c~~  146 (181)
                      +|.++++|.. ..  +.++| .|+++|+|.+|+.
T Consensus         2 ~C~~~g~C~~-~~~~g~~~C~~C~~g~~G~~Ce~   34 (162)
T 1klo_A            2 PCPGGSSCAI-VPKTKEVVCTHCPTGTAGKRCEL   34 (162)
T ss_dssp             CSCTTCCEEE-CSSSCCEEECSCCTTEESTTSCE
T ss_pred             cCcCcCcccc-cCCCCCEEeCCCCCCCcCCCCcC
Confidence            4667778865 43  56889 7999999988863

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=92.84  E-value=0.092  Score=34.43  Aligned_cols=33  Identities=33%  Similarity=0.922  Sum_probs=26.8

Q ss_pred             CCCCCCEEecCC--CCe-eEeCCCCCcCCCCCCCCC
Q psy9688          49 PCLGHGTCINRS--DRY-QCLCTPRYSGNNCEKDNG   81 (181)
Q Consensus        49 ~c~~~~~C~~~~--~~~-~C~c~~g~~g~~c~~~~~   81 (181)
                      ||.++++|+...  ..+ .|.|++||.|..|+++++
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~   49 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS   49 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESS
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceecccc
Confidence            799999998752  345 899999999999986543

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=92.50  E-value=0.2  Score=27.33  Aligned_cols=24  Identities=25%  Similarity=0.728  Sum_probs=19.3

Q ss_pred             CEEeeCCC-CceEeecCCCCc----cCCcc
Q psy9688         121 CVCVDDGN-LSFYCNCTEDFT----GEYCQ  145 (181)
Q Consensus       121 ~~C~~~~~-~~~~C~C~~g~~----g~~c~  145 (181)
                      ..|++ .. ++|.|.|++||.    ++.|.
T Consensus        11 ~~C~n-~~~gs~~C~C~~Gy~L~~D~~tC~   39 (59)
T 2wph_E           11 QFCKN-SADNKVVCSCTEGYRLAENQKSCE   39 (59)
T ss_dssp             SEEEE-CSTTCEEEECCTTEEECTTSSCEE
T ss_pred             CEeEe-CCCCCEEeeCCCCcEECCCCCccc
Confidence            37888 77 699999999996    55665

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=92.14  E-value=0.88  Score=27.11  Aligned_cols=68  Identities=21%  Similarity=0.408  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCEEeeCCCCceEeecCCCCc--cCCccccCCCCCCC-CCCCCCCCEEeeCCCCcceEEecCCC
Q psy9688         112 CTSNPCLNDCVCVDDGNLSFYCNCTEDFT--GEYCQFENSAACVT-LNPCQNNATCVASPGEKQITCLCLKE  180 (181)
Q Consensus       112 c~~~~c~~~~~C~~~~~~~~~C~C~~g~~--g~~c~~~~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g  180 (181)
                      |....|+.++.|..-..+.-.|.|..+|.  +..|.......|.. ...|...+.|..... .+..|.|...
T Consensus         7 C~~tkcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~~C~~NNGGCd~nA~C~~~~~-~kIvC~C~~~   77 (95)
T 1b9w_A            7 CIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDK-NEIVCKCTKE   77 (95)
T ss_dssp             CSSCCCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTCCTTTGGGGSCTTSEEEECTT-SCEEEECCST
T ss_pred             cccCCCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCCCccccCCCcCCCcceeecCC-CcEEEECCCC
Confidence            33345677788876234677899999997  66676423346766 346999999987772 3588999765

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=92.05  E-value=0.1  Score=28.46  Aligned_cols=22  Identities=23%  Similarity=0.709  Sum_probs=17.8

Q ss_pred             CCCCCCCEEeeCC-CCcceEEecCCCC
Q psy9688         156 NPCQNNATCVASP-GEKQITCLCLKEV  181 (181)
Q Consensus       156 ~~C~~~~~C~~~~-g~~~~~C~C~~g~  181 (181)
                      ..|.+  .|++++ |+  |.|.|++||
T Consensus         7 ggC~~--~C~n~~~gs--~~C~C~~Gy   29 (59)
T 2wph_E            7 GRCEQ--FCKNSADNK--VVCSCTEGY   29 (59)
T ss_dssp             GGCSS--EEEECSTTC--EEEECCTTE
T ss_pred             CCcCC--EeEeCCCCC--EEeeCCCCc
Confidence            34655  899999 57  889999987

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=91.91  E-value=0.075  Score=30.87  Aligned_cols=31  Identities=23%  Similarity=0.530  Sum_probs=21.9

Q ss_pred             CCCCCCCEEee-CCCCceEeecCCCCccCCccc
Q psy9688         115 NPCLNDCVCVD-DGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       115 ~~c~~~~~C~~-~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ..|.++ +|.. ...+.+.|.|.+||+|..|+.
T Consensus        46 ~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~   77 (79)
T 1xdt_R           46 DFCIHG-ECKYVKELRAPSCICHPGYHGERCHG   77 (79)
T ss_dssp             TCCSSE-EECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             CcCCCC-EeeeecCCCCeEEEcCCCcccccccc
Confidence            456664 7732 034567899999999999963

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=91.70  E-value=0.21  Score=32.73  Aligned_cols=30  Identities=37%  Similarity=0.978  Sum_probs=23.8

Q ss_pred             CCCCCCEEeeCC--CCce-EeecCCCCccCCccc
Q psy9688         116 PCLNDCVCVDDG--NLSF-YCNCTEDFTGEYCQF  146 (181)
Q Consensus       116 ~c~~~~~C~~~~--~~~~-~C~C~~g~~g~~c~~  146 (181)
                      ||.++++|+. .  ...+ .|.|++||.|+.|+.
T Consensus        14 pC~NGGtC~~-~~~~s~~~~C~Cp~g~~G~~Cei   46 (145)
T 2i9a_A           14 DCLNGGTCVS-NKYFSNIHWCNCPKKFGGQHCEI   46 (145)
T ss_dssp             CCCTTCEEEE-CSSSTTCEEEECCTTEESTTSCE
T ss_pred             CCCCCCCcCC-CccccCCccccCCCCCCCCceec
Confidence            7888888876 4  2345 799999999999975

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=91.49  E-value=0.21  Score=26.31  Aligned_cols=30  Identities=23%  Similarity=0.608  Sum_probs=21.8

Q ss_pred             CCCCCCEEe-eCCCCceEeecCCCCccCCccc
Q psy9688         116 PCLNDCVCV-DDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       116 ~c~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      .|.+ ++|. ....+.+.|.|+.||+|..|+.
T Consensus        19 yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           19 FCIH-GECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             TCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             cCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence            3554 4775 1155678999999999999863

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=91.23  E-value=0.14  Score=45.14  Aligned_cols=39  Identities=28%  Similarity=0.824  Sum_probs=34.0

Q ss_pred             CcCCCCCCCCCCCEEecCCCCeeEeCC-CCCcCCCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCINRSDRYQCLCT-PRYSGNNCEKDN   80 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~~~~~~~C~c~-~g~~g~~c~~~~   80 (181)
                      .+.|.+.||.++++|+...+.|.|.|+ ++|+|..|+.+.
T Consensus      1017 ~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~~ 1056 (1245)
T 3qcw_A         1017 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPG 1056 (1245)
T ss_dssp             CCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBCC
T ss_pred             cCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCCC
Confidence            367888999999999988888999999 699999998544

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=91.12  E-value=0.23  Score=26.13  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         156 NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       156 ~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +.|.+| +|+.......+.|.|++||
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy   38 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGY   38 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCC
Confidence            678886 9987654445899999997

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=90.07  E-value=0.23  Score=33.83  Aligned_cols=32  Identities=28%  Similarity=0.808  Sum_probs=25.1

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ..|. .+|.+++.|+.  +  .+|.|++||.|..|+.
T Consensus       149 ~~C~-~~C~ngG~Cv~--P--~~C~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          149 AECP-GGCRNGGFCNE--R--RICECPDGFHGPHCEG  180 (188)
T ss_dssp             CCCT-TCCCTTCEECT--T--SCEECCTTCBTTTTCB
T ss_pred             CccC-CCCCCCCEeCC--C--CcccCcCCCCCCCCcC
Confidence            3453 47999999974  2  4799999999999974

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=89.86  E-value=0.16  Score=39.32  Aligned_cols=27  Identities=44%  Similarity=0.972  Sum_probs=0.0

Q ss_pred             CCCCCCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          48 DPCLGHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        48 ~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      .+|.++++|.+..   .|.|++||+|..|+
T Consensus       371 ~~C~ngg~C~~~~---~C~C~~G~~G~~Ce  397 (426)
T 3zyj_B          371 LHCQNGGTCHNNV---RCLCPAAYTGILCE  397 (426)
T ss_dssp             ------------------------------
T ss_pred             ccCCCCCCcCCCC---CCcCCCCCcCCCCc
Confidence            5788888897655   89999999998886

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=89.72  E-value=0.17  Score=33.87  Aligned_cols=32  Identities=28%  Similarity=0.755  Sum_probs=25.8

Q ss_pred             cccCcCCCCCC-----CCCCCEEecCCCCeeEeCCCCCc
Q psy9688          39 NSKVDHCLTDP-----CLGHGTCINRSDRYQCLCTPRYS   72 (181)
Q Consensus        39 ~~~~~~c~~~~-----c~~~~~C~~~~~~~~C~c~~g~~   72 (181)
                      ..++++|...+     |.+  .|++..+.|.|.|++||.
T Consensus       121 ~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~  157 (170)
T 1szb_A          121 AEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYV  157 (170)
T ss_dssp             EEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEE
T ss_pred             ccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcE
Confidence            45678886543     654  799999999999999997

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=89.34  E-value=0.25  Score=43.62  Aligned_cols=38  Identities=37%  Similarity=1.026  Sum_probs=33.6

Q ss_pred             CcCCCCCCCCCCCEEecCCCCeeEeCC-CCCcCCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCINRSDRYQCLCT-PRYSGNNCEKD   79 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~~~~~~~C~c~-~g~~g~~c~~~   79 (181)
                      .+.|.+.||.+++.|.+..+.|.|.|+ +||.|..|+.+
T Consensus       619 ~~~C~~~pC~ngg~C~~~~~~~~C~C~~~g~~G~~C~~~  657 (1245)
T 3qcw_A          619 AKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE  657 (1245)
T ss_dssp             SCGGGSCCCCTTCEEEECSSSEEEECTTTTEESTTSCEE
T ss_pred             CCCCCccCCCCCCEEeCCCCCeEEECCCCCcccccCccc
Confidence            467888999999999998889999999 79999999743

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=88.36  E-value=0.22  Score=32.83  Aligned_cols=30  Identities=27%  Similarity=0.608  Sum_probs=23.1

Q ss_pred             CCCCCCCC--CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVTL--NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~~--~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++++|...  ..|.  ..|.+..++  +.|.|++||
T Consensus       116 d~~eC~~~~~~~C~--~~C~n~~g~--~~C~C~~Gy  147 (159)
T 1nzi_A          116 DINECTDFVDVPCS--HFCNNFIGG--YFCSCPPEY  147 (159)
T ss_dssp             ECCTTTC-CCCCSS--SEEEEETTE--EEEECCTTC
T ss_pred             cCcccCCCCCCCCC--CcccCcCCC--EEEecCCCc
Confidence            66788652  3465  489999998  899999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	3e-06
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	5e-04
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	9e-06
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	7e-04
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-05
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	2e-05
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	3e-05
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	8e-05
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	1e-04
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	2e-04
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	7e-04
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	0.004
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	0.002
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	0.003
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	0.004

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 3e-06
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD 79
          V+ C+++PC    TC+++   +QC+C P Y G +CE +
Sbjct: 1  VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 5e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 109 IRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ 145
           + +C SNPC ND  C+D     F C C   + G +C+
Sbjct: 1   VNECVSNPCQNDATCLDQIG-EFQCICMPGYEGVHCE 36

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 9e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
           D C ++PCL  G+C +  + Y+C C   + G NCE
Sbjct: 3  GDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 7e-04
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ 145
           +   C SNPCLN   C DD N S+ C C   F G+ C+
Sbjct: 2   DGDQCESNPCLNGGSCKDDIN-SYECWCPFGFEGKNCE 38

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
           D C + PC   G+C ++   Y C C P + G NCE
Sbjct: 2  GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 14/35 (40%), Positives = 16/35 (45%)

Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
          D C T PC   G C +    Y C C   + G NCE
Sbjct: 1  DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 35

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 3e-05
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
          D C + PCL +G C+++ + +QC C   ++G+ C+
Sbjct: 1  DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 8e-05
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD 79
            C    C GHG C+   + Y C C P +SG  CE+ 
Sbjct: 2  AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI 38

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE 77
            C    C   G C+     Y C C P + G  CE
Sbjct: 2  ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 45 CLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD 79
             +PC   G CIN    ++C C   Y+G  CE D
Sbjct: 8  LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 42

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 33.6 bits (77), Expect = 7e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 109 IRDCTSNPCLNDCVCVDDGNLSFYCNCTED-FTGEYCQ 145
           +  C   PC +  +CV  G   + C+CT   ++G  C 
Sbjct: 2   VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 31.7 bits (72), Expect = 0.004
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 42 VDHCLTDPCLGHGTCINRS-DRYQCLCTP-RYSGNNCEK 78
          V+ C   PC   G C+    DRYQC CT   YSG NC  
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.5 bits (74), Expect = 0.002
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 111 DCTSNPCLNDCVCVDDGNLSFYCNCTED-FTGEYCQ 145
            C SNPC N   C+  G   + C+CT   F GE C 
Sbjct: 3   PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (74), Expect = 0.003
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD 79
             C +  C  HGTCI+    + C C   + G  C+++
Sbjct: 8  EHPCASLCCG-HGTCIDGIGSFSCDCRSGWEGRFCQRE 44

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.004
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 41 KVDHCLTDPCLGHGTC-----INRSDRYQCLCTPRYSGNNCEKDNGDCSSNPC 88
          K        C+  G C     ++   RY C C P ++G  C ++      N  
Sbjct: 5  KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQE 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.95
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.94
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.92
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.91
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.82
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.8
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.8
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.79
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.78
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.74
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.67
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.66
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.61
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.59
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.55
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.51
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.46
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.44
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.39
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.37
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.3
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.26
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.23
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.11
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.1
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.06
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.06
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.02
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.91
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.87
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.86
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.75
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.72
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.64
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.64
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.61
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.55
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.51
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.36
d1nt0a3	45	Mannose-binding protein associated serine protease	97.33
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.3
d1szba2	45	Mannose-binding protein associated serine protease	97.26
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.24
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.22
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.19
d1nt0a3	45	Mannose-binding protein associated serine protease	97.07
d1szba2	45	Mannose-binding protein associated serine protease	97.07
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.78
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.54
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	96.46
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	96.21
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	96.16
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.12
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	95.84
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	95.18
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	95.15
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	94.97
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	94.72
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	94.45
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	94.09
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	93.66
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	93.45
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	93.33
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	92.81
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	91.46
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	91.22
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	91.21
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	91.07
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	90.12
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	89.46
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	86.17
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	84.06
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	83.53

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.8e-10  Score=56.08  Aligned_cols=37  Identities=38%  Similarity=1.148  Sum_probs=34.6

Q ss_pred             CcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~   78 (181)
                      +|+|.+.||.++++|++..+.|.|.|++||+|..|+.
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV   37 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCee
Confidence            5789999999999999999999999999999999973

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.4e-10  Score=55.61  Aligned_cols=37  Identities=38%  Similarity=1.043  Sum_probs=34.9

Q ss_pred             cCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      |+|+|.++||.++++|++..+.|.|.|++||+|+.|+
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            6789999999999999999999999999999999986

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.2e-10  Score=56.77  Aligned_cols=38  Identities=39%  Similarity=1.010  Sum_probs=34.3

Q ss_pred             ccCcCCC--CCCCCCCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          40 SKVDHCL--TDPCLGHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        40 ~~~~~c~--~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      +|+++|.  +.||.++++|++..+.|.|.|++||+|..|+
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSC
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCc
Confidence            3678886  5789999999999999999999999999986

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.91  E-value=2.4e-10  Score=56.20  Aligned_cols=37  Identities=38%  Similarity=1.075  Sum_probs=34.4

Q ss_pred             cCcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      |+|+|.+.||.++++|++..+.|.|.|++||+|..|+
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            5789999999999999999999999999999999885

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.6e-09  Score=51.73  Aligned_cols=35  Identities=34%  Similarity=1.127  Sum_probs=32.6

Q ss_pred             cCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      |+|.+.||.++++|++..+.|.|.|++||+|..|+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            57899999999999999999999999999999885

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.7e-09  Score=52.47  Aligned_cols=37  Identities=41%  Similarity=0.863  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCcc
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ  145 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~  145 (181)
                      ++++|.++||.++++|++ ..+.|+|.|++||+|+.|+
T Consensus         2 d~d~C~~~PC~ngg~C~~-~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKD-DINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEE-ETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCcEEEc-CCCCEEEECCCCCCCCCCC
Confidence            578899999999999999 8999999999999999985

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.3e-09  Score=52.57  Aligned_cols=37  Identities=38%  Similarity=0.949  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         109 IRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       109 ~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      |++|.+.||.++++|++ ..++|+|.|++||+|+.|+.
T Consensus         1 Id~C~~~PC~n~g~C~~-~~~~y~C~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLD-QIGEFQCICMPGYEGVHCEV   37 (39)
T ss_dssp             CCTTTTCCCCSSCEEEE-CSSCEEEECCTTEESSSSCE
T ss_pred             CcCCcCCCCCCCCEEEC-CCCCEEEeCCCCCccCcCee
Confidence            47888899999999999 89999999999999999974

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.4e-09  Score=53.07  Aligned_cols=36  Identities=39%  Similarity=1.005  Sum_probs=33.5

Q ss_pred             cCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~   78 (181)
                      |+|.+.||.++++|++..+.|.|.|++||+|..|+.
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei   36 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL   36 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTCE
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCeE
Confidence            578999999999999999999999999999999974

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.78  E-value=1.7e-09  Score=53.03  Aligned_cols=37  Identities=35%  Similarity=0.823  Sum_probs=33.4

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCcc
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ  145 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~  145 (181)
                      ++++|.++||.++++|++ ..+.|+|.|++||+|+.|+
T Consensus         1 D~d~C~~~PC~ngg~C~~-~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKD-QLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEE-ETTEEEEECCTTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEEC-CCCCeEEECCCCCcCCCCC
Confidence            367888899999999999 8999999999999999884

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=7.5e-09  Score=52.35  Aligned_cols=38  Identities=32%  Similarity=0.918  Sum_probs=33.3

Q ss_pred             CCCCCC--CCCCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         108 EIRDCT--SNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       108 ~~~~c~--~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ++++|+  ..||.++++|++ ..++|+|.|++||+|+.|+.
T Consensus         2 DideC~~~~~pC~n~g~C~n-~~g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCIN-TLGSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEE-CSSSEEEECCTTEESTTSCE
T ss_pred             CCccccCCCCCCCCCcEeEC-CCCCEEeECCCCCcCCCCcC
Confidence            567776  468999999999 89999999999999999863

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.5e-08  Score=48.94  Aligned_cols=35  Identities=43%  Similarity=1.060  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCcc
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQ  145 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~  145 (181)
                      ++|.+.||.++++|++ ..+.|+|.|++||.|+.|+
T Consensus         1 d~C~~~PC~ngg~C~~-~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLD-KINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEE-CSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEEC-CCCCeEEECCCCCCCCCcC
Confidence            4677889999999999 8899999999999999884

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.9e-09  Score=53.56  Aligned_cols=37  Identities=38%  Similarity=1.029  Sum_probs=33.6

Q ss_pred             cCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKD   79 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~   79 (181)
                      +.|.+.||.++++|++..+.|.|.|++||.|..|+..
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcCcc
Confidence            5788999999999999889999999999999999843

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.5e-08  Score=50.09  Aligned_cols=36  Identities=36%  Similarity=0.966  Sum_probs=32.3

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ++|.+.||.++++|++ ..+.|+|.|++||+|+.|+.
T Consensus         1 D~C~~~PC~ngg~C~~-~~~~y~C~C~~G~~G~~Cei   36 (39)
T d1xkba1           1 DQCETSPCQNQGKCKD-GLGEYTCTCLEGFEGKNCEL   36 (39)
T ss_dssp             CTTTTCCCCSSCEECC-CSSSCCEECCTTEETTTTCE
T ss_pred             CcCCCCCCCCCcEEEC-CCCCEEEECCCCCCcCcCeE
Confidence            4677889999999998 88999999999999999974

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.4e-08  Score=49.04  Aligned_cols=37  Identities=30%  Similarity=0.826  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCEEecC--CCCeeEeCCCCCcCCCCCCCCC
Q psy9688          45 CLTDPCLGHGTCINR--SDRYQCLCTPRYSGNNCEKDNG   81 (181)
Q Consensus        45 c~~~~c~~~~~C~~~--~~~~~C~c~~g~~g~~c~~~~~   81 (181)
                      |.+.||.++++|+..  ...|.|.|++||+|..|+.+++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~   39 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   39 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcC
Confidence            568899999999864  4579999999999999987664

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.5e-08  Score=52.35  Aligned_cols=39  Identities=26%  Similarity=0.685  Sum_probs=34.6

Q ss_pred             CcCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCEKDNG   81 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~~~~~   81 (181)
                      .++|.++||.+ ++|++..+.|.|.|++||.|..|+.+|.
T Consensus         8 ~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~~I~   46 (48)
T d1autl1           8 EHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQREVS   46 (48)
T ss_dssp             CCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSCEECC
T ss_pred             CCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCcccccC
Confidence            46888999987 8999999999999999999999987663

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.8e-08  Score=50.21  Aligned_cols=35  Identities=31%  Similarity=0.901  Sum_probs=32.8

Q ss_pred             cCCCCCCCCCCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      +.|.++||.++++|++..+.|.|.|++||+|..|+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE   36 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCC
Confidence            56889999999999999999999999999999997

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.3e-08  Score=49.50  Aligned_cols=36  Identities=28%  Similarity=0.743  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      +.|.++||.++++|++ ..+.|+|.|++||.|+.|+.
T Consensus         2 ~~C~~~pC~ngg~C~~-~~~~~~C~C~~g~~G~~Ce~   37 (39)
T d1g1ta2           2 AACTNTSCSGHGECVE-TINNYTCKCDPGFSGLKCEQ   37 (39)
T ss_dssp             CCCCTTGGGGSEEEEE-ETTEEEEEECTTEESTTSCE
T ss_pred             CcccCCcCCCCcEEEC-CCCCEEEeCCCCCcCcCcCc
Confidence            4677889999999999 88999999999999999974

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.1e-08  Score=50.04  Aligned_cols=39  Identities=33%  Similarity=0.741  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccccCC
Q psy9688         108 EIRDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFENS  149 (181)
Q Consensus       108 ~~~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~  149 (181)
                      ..+.|.++||.+ ++|++ ..+.|.|.|++||+|++|+. +|
T Consensus         7 ~~~~C~~~PC~n-G~C~~-~~~~y~C~C~~G~~G~~Ce~-~I   45 (48)
T d1autl1           7 LEHPCASLCCGH-GTCID-GIGSFSCDCRSGWEGRFCQR-EV   45 (48)
T ss_dssp             SCCSSSSTTTTS-EEECC-CSSCCCEEECTTEESTTSCE-EC
T ss_pred             CCCcccCCCCCC-CEEEC-CCCCCeEeCCCCCcCCCccc-cc
Confidence            567888899986 79998 88999999999999999986 44

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.4e-08  Score=47.89  Aligned_cols=36  Identities=22%  Similarity=0.718  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      +.|.++||.++++|++ ..+.|+|.|++||.|+.|+.
T Consensus         2 ~~C~~~pC~ngg~C~~-~~~~y~C~C~~g~~G~~Ce~   37 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLE-TIGNYTCSCYPGFYGPECEY   37 (40)
T ss_dssp             CCCCTTGGGGSEEEEE-CSSSEEEEECTTEESTTSCE
T ss_pred             CcccCCcCCCCcEEEC-CCCCeEEeCCCCccCCCCCC
Confidence            4677889999999999 88999999999999999974

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.7e-07  Score=45.57  Aligned_cols=38  Identities=29%  Similarity=0.815  Sum_probs=29.8

Q ss_pred             CCCCCCCCCCEEeeC-CCCceEeecCCCCccCCccccCCC
Q psy9688         112 CTSNPCLNDCVCVDD-GNLSFYCNCTEDFTGEYCQFENSA  150 (181)
Q Consensus       112 c~~~~c~~~~~C~~~-~~~~~~C~C~~g~~g~~c~~~~~~  150 (181)
                      |.++||.++++|++. ....|+|.|++||+|++|+. ++.
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~-~~~   39 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI-DTR   39 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCB-CSS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCc-CcC
Confidence            456789999999761 24679999999999999986 443

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.30  E-value=1.9e-07  Score=46.90  Aligned_cols=37  Identities=49%  Similarity=1.019  Sum_probs=32.2

Q ss_pred             CcCCCCCCCCCCCEEec-CCCCeeEeCCC-CCcCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCIN-RSDRYQCLCTP-RYSGNNCEK   78 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~~-~~~~~~C~c~~-g~~g~~c~~   78 (181)
                      +++|.+.||.++++|+. ..+.|.|.|.. ||+|..|++
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence            67899999999999986 46789999986 899999973

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=3.6e-07  Score=45.55  Aligned_cols=35  Identities=37%  Similarity=1.082  Sum_probs=30.9

Q ss_pred             cCCCCCCCCCCCEEecC-CCCeeEeCC-CCCcCCCCC
Q psy9688          43 DHCLTDPCLGHGTCINR-SDRYQCLCT-PRYSGNNCE   77 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~~-~~~~~C~c~-~g~~g~~c~   77 (181)
                      |+|.+.||.++++|++. .+.|+|.|+ +||+|..|+
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcC
Confidence            67999999999999874 578999996 699999997

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.23  E-value=3.7e-07  Score=45.77  Aligned_cols=38  Identities=29%  Similarity=0.842  Sum_probs=31.7

Q ss_pred             CCCCCCCCCCCCCEEeeCCCCceEeecCC-CCccCCccc
Q psy9688         109 IRDCTSNPCLNDCVCVDDGNLSFYCNCTE-DFTGEYCQF  146 (181)
Q Consensus       109 ~~~c~~~~c~~~~~C~~~~~~~~~C~C~~-g~~g~~c~~  146 (181)
                      ++.|.++||.++++|++...+.|+|.|.. ||+|+.|+.
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence            57788899999999986246789999986 899999973

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.2e-07  Score=45.86  Aligned_cols=34  Identities=32%  Similarity=0.727  Sum_probs=28.1

Q ss_pred             cccCcCCCCCCCCCCCEEecCCCCeeEeCCCCCc
Q psy9688          39 NSKVDHCLTDPCLGHGTCINRSDRYQCLCTPRYS   72 (181)
Q Consensus        39 ~~~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~   72 (181)
                      +.|+|+|...++...+.|+|..++|.|.|++||+
T Consensus         2 CvDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~   35 (43)
T d1emoa1           2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYI   35 (43)
T ss_dssp             CCCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEE
T ss_pred             CcceeccCCcCCCCCCEeECCCCCeEeECCCCcc
Confidence            3577888666655668899999999999999997

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.5e-07  Score=49.19  Aligned_cols=43  Identities=23%  Similarity=0.621  Sum_probs=34.2

Q ss_pred             CcCCCCCCCCCCCEEe-----cCCCCeeEeCCCCCcCCCCCCCCCCCC
Q psy9688          42 VDHCLTDPCLGHGTCI-----NRSDRYQCLCTPRYSGNNCEKDNGDCS   84 (181)
Q Consensus        42 ~~~c~~~~c~~~~~C~-----~~~~~~~C~c~~g~~g~~c~~~~~~c~   84 (181)
                      .++|...+|.++++|.     +..+.|.|.|++||+|..|+..+....
T Consensus         6 c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~~~   53 (63)
T d1haea_           6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKV   53 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSC
T ss_pred             CCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCccc
Confidence            3556678999999994     455679999999999999997665543

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.8e-07  Score=44.97  Aligned_cols=30  Identities=23%  Similarity=0.657  Sum_probs=24.7

Q ss_pred             CCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ||++|+..++|.+  +|+|++|+  |.|.|++||
T Consensus         1 DidEC~~~~~C~~--~C~N~~Gs--y~C~C~~Gy   30 (40)
T d1dx5i3           1 DIDECENGGFCSG--VCHNLPGT--FECICGPDS   30 (40)
T ss_dssp             ECCHHHHCSSCSS--EEEECSSS--EEEEECSSS
T ss_pred             CccccCCCcCccC--EeeCCCCC--eEeECCCCC
Confidence            4677765567865  99999999  999999997

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3e-07  Score=46.17  Aligned_cols=31  Identities=19%  Similarity=0.504  Sum_probs=24.8

Q ss_pred             CCCCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ||++|.. +..|. ++.|+|++|+  |.|.|++||
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gs--y~C~C~~Gy   32 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGS--YRCECPPGH   32 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTE--EEEESCTTS
T ss_pred             CccccCCCCCCCC-CCEeECCCCC--eEEeCCCCC
Confidence            4677764 45674 5799999999  999999997

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.5e-07  Score=45.11  Aligned_cols=31  Identities=16%  Similarity=0.457  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +|++|.. ..+..+++|+|++|+  |.|.|++||
T Consensus         4 DidEC~~-~~~~~~~~C~Nt~Gs--y~C~C~~Gy   34 (43)
T d1emoa1           4 DMDECKE-PDVCKHGQCINTDGS--YRCECPFGY   34 (43)
T ss_dssp             CCCSSSS-TTSCSSSCCCCCSSC--CCCCCCTTE
T ss_pred             ceeccCC-cCCCCCCEeECCCCC--eEeECCCCc
Confidence            8999987 444456789999999  889999997

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.1e-06  Score=44.38  Aligned_cols=31  Identities=26%  Similarity=0.731  Sum_probs=26.1

Q ss_pred             CCCCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +|++|+. ...|. +++|+|++|+  |.|.|++||
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~Gs--y~C~C~~Gy   33 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTPGD--FECKCDEGY   33 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEETTE--EEECCCSSE
T ss_pred             cccccCCCCCCCC-CCEeEcCCCC--eEEeCCCCC
Confidence            7899976 45575 5789999999  999999997

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=2e-06  Score=42.76  Aligned_cols=37  Identities=41%  Similarity=0.908  Sum_probs=30.2

Q ss_pred             CCCCCCCCCCCCEEeeCCCCceEeecC-CCCccCCccc
Q psy9688         110 RDCTSNPCLNDCVCVDDGNLSFYCNCT-EDFTGEYCQF  146 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~~~~~~~~C~C~-~g~~g~~c~~  146 (181)
                      +.|.+.||.++++|++...+.|+|.|. +||+|+.|+.
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCc
Confidence            567788999999997623578999996 6999999973

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.4e-07  Score=45.79  Aligned_cols=31  Identities=23%  Similarity=0.619  Sum_probs=25.4

Q ss_pred             CCCCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ||++|.. ++.|. +++|+|++|+  |.|.|++||
T Consensus         2 DinEC~~~~~~c~-~~~C~Nt~Gs--y~C~C~~Gy   33 (43)
T d1uzka2           2 DIDECQELPGLCQ-GGKCINTFGS--FQCRCPTGY   33 (43)
T ss_dssp             ECCHHHHCGGGGB-TSEEEECSSC--EEEECCTTC
T ss_pred             CcccccCCCCCcC-CCEEECCCCC--eEeECCCCC
Confidence            7888864 45575 4689999999  999999997

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.2e-06  Score=42.55  Aligned_cols=31  Identities=26%  Similarity=0.765  Sum_probs=25.3

Q ss_pred             CCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +|++|+..+.+ .++.|+|++|+  |.|.|++||
T Consensus         2 DidEC~~~~~~-c~~~C~Nt~G~--y~C~C~~Gy   32 (43)
T d1uzka1           2 DVNECLDPTTC-ISGNCVNTPGS--YICDCPPDF   32 (43)
T ss_dssp             CCCGGGSTTSS-BTSEEEEETTE--EEEECCTTC
T ss_pred             CccccCCCCcC-cCCEeECCCCC--EEEecCCCC
Confidence            78899763444 35699999999  999999998

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.4e-06  Score=41.92  Aligned_cols=29  Identities=24%  Similarity=0.636  Sum_probs=24.4

Q ss_pred             CCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         149 SAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       149 ~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      |++|+.+++|.+  +|+|++|+  |.|.|++||
T Consensus         1 idEC~~~~~C~~--~C~n~~Gs--y~C~C~~Gy   29 (41)
T d1i0ua2           1 IDECQDPDTCSQ--LCVNLEGG--YKCQCEEGF   29 (41)
T ss_dssp             CCTTTTTTSCSS--CEECSSSC--CEECCCTTE
T ss_pred             CccCCCCCCCCC--EeECCCCC--EEeECCCCC
Confidence            467876567866  89999999  889999997

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=7.9e-06  Score=43.05  Aligned_cols=32  Identities=16%  Similarity=0.346  Sum_probs=23.9

Q ss_pred             CCCCCCC-CCCCC------CCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVT-LNPCQ------NNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~-~~~C~------~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ||++|.. ...|.      ...+|+|++|+  |.|.|++||
T Consensus         3 DidEC~~~~~~c~~~~~~~c~~~C~Nt~Gs--Y~C~C~~Gy   41 (53)
T d1apqa_           3 DLDECASRSKSGEEDPQPQCQHLCHNYVGG--YFCSCRPGY   41 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTE--EEEECSTTC
T ss_pred             ecccccCCCCCcccCCCCCccCEeEcCCCC--eEeECCCCC
Confidence            7788865 23332      23489999999  999999998

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=1.6e-05  Score=41.70  Aligned_cols=36  Identities=33%  Similarity=0.845  Sum_probs=30.0

Q ss_pred             cCCCCCCCCCCCEEec--CCCCeeEeCCCCCcCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCIN--RSDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~--~~~~~~C~c~~g~~g~~c~~   78 (181)
                      ++|.+.+|.++++|+.  ....|+|.|++||+|..|+.
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCcc
Confidence            4566788999999974  44579999999999999984

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.1e-06  Score=43.22  Aligned_cols=33  Identities=33%  Similarity=0.780  Sum_probs=25.4

Q ss_pred             ccCcCCCC--CCCCCCCEEecCCCCeeEeCCCCCcC
Q psy9688          40 SKVDHCLT--DPCLGHGTCINRSDRYQCLCTPRYSG   73 (181)
Q Consensus        40 ~~~~~c~~--~~c~~~~~C~~~~~~~~C~c~~g~~g   73 (181)
                      +|+|+|..  ..|. ++.|+|++++|.|.|++||..
T Consensus         1 qDinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l   35 (43)
T d1uzka2           1 EDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYL   35 (43)
T ss_dssp             EECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCB
T ss_pred             CCcccccCCCCCcC-CCEEECCCCCeEeECCCCCeE
Confidence            35677743  3354 468999999999999999973

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.4e-06  Score=42.03  Aligned_cols=32  Identities=31%  Similarity=0.811  Sum_probs=25.2

Q ss_pred             cCcCCCCCCCCCCCEEecCCCCeeEeCCCCCc
Q psy9688          41 KVDHCLTDPCLGHGTCINRSDRYQCLCTPRYS   72 (181)
Q Consensus        41 ~~~~c~~~~c~~~~~C~~~~~~~~C~c~~g~~   72 (181)
                      |+++|......-.+.|+|..++|.|.|++||.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~   33 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFE   33 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCE
Confidence            67778543322457999999999999999996

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=6.3e-06  Score=41.46  Aligned_cols=33  Identities=27%  Similarity=0.841  Sum_probs=26.3

Q ss_pred             cCcCCCCC--CCCCCCEEecCCCCeeEeCCCCCcCC
Q psy9688          41 KVDHCLTD--PCLGHGTCINRSDRYQCLCTPRYSGN   74 (181)
Q Consensus        41 ~~~~c~~~--~c~~~~~C~~~~~~~~C~c~~g~~g~   74 (181)
                      |+|+|...  .|. ++.|+|+.++|.|.|++||.+.
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred             cccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence            67888543  364 4789999999999999999753

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=4.8e-05  Score=39.80  Aligned_cols=37  Identities=32%  Similarity=0.736  Sum_probs=29.0

Q ss_pred             CCCCCCCCCCCCEEee-CCCCceEeecCCCCccCCccc
Q psy9688         110 RDCTSNPCLNDCVCVD-DGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       110 ~~c~~~~c~~~~~C~~-~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      ..|...+|.++++|.. .....|+|.|++||+|+.|+.
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCcc
Confidence            3455668888899963 144679999999999999985

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=8.4e-06  Score=40.66  Aligned_cols=32  Identities=31%  Similarity=0.723  Sum_probs=24.6

Q ss_pred             cCcCCCC--CCCCCCCEEecCCCCeeEeCCCCCcC
Q psy9688          41 KVDHCLT--DPCLGHGTCINRSDRYQCLCTPRYSG   73 (181)
Q Consensus        41 ~~~~c~~--~~c~~~~~C~~~~~~~~C~c~~g~~g   73 (181)
                      |+|+|..  ..|. ++.|+|+.++|.|.|++||..
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l   34 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   34 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             CccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeE
Confidence            4566643  3464 579999999999999999973

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.1e-05  Score=44.14  Aligned_cols=43  Identities=26%  Similarity=0.550  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCCCEEe-----eCCCCceEeecCCCCccCCccccCCCCCC
Q psy9688         109 IRDCTSNPCLNDCVCV-----DDGNLSFYCNCTEDFTGEYCQFENSAACV  153 (181)
Q Consensus       109 ~~~c~~~~c~~~~~C~-----~~~~~~~~C~C~~g~~g~~c~~~~~~~c~  153 (181)
                      .++|...+|.++++|.     + ..+.|.|.|++||+|..|+. .+..+.
T Consensus         6 c~ec~~~~C~NgG~C~~~~~~~-~~~~y~C~C~~gy~G~~Ce~-~~~~~~   53 (63)
T d1haea_           6 CAEKEKTFCVNGGECFMVKDLS-NPSRYLCKCQPGFTGARCTE-NVPMKV   53 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSS-SSCCEEEECCTTEESTTSCE-ECCSSC
T ss_pred             CCCCcCCcCCCCCEEeeccccc-CCCCEEeECCCCCCCCCcCC-CCCccc
Confidence            3455567888888884     3 45789999999999999986 444443

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.3e-05  Score=41.14  Aligned_cols=36  Identities=31%  Similarity=0.747  Sum_probs=29.8

Q ss_pred             cCCCCCCCCCCCEEec--CCCCeeEeCCCCCcCCCCCC
Q psy9688          43 DHCLTDPCLGHGTCIN--RSDRYQCLCTPRYSGNNCEK   78 (181)
Q Consensus        43 ~~c~~~~c~~~~~C~~--~~~~~~C~c~~g~~g~~c~~   78 (181)
                      ++|...+|.++++|+.  ....|+|.|++||+|..|+.
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~   42 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY   42 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCc
Confidence            4566788999999975  34569999999999999973

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.5e-05  Score=41.03  Aligned_cols=20  Identities=35%  Similarity=0.806  Sum_probs=18.4

Q ss_pred             CCEEecCCCCeeEeCCCCCc
Q psy9688          53 HGTCINRSDRYQCLCTPRYS   72 (181)
Q Consensus        53 ~~~C~~~~~~~~C~c~~g~~   72 (181)
                      ...|+|++++|.|.|++||+
T Consensus        23 ~~~C~Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_          23 QHLCHNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             SSEEEEETTEEEEECSTTCE
T ss_pred             cCEeEcCCCCeEeECCCCCe
Confidence            45899999999999999997

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3e-05  Score=39.73  Aligned_cols=38  Identities=32%  Similarity=0.752  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCCEEee-CCCCceEeecCCCCccCCccccC
Q psy9688         111 DCTSNPCLNDCVCVD-DGNLSFYCNCTEDFTGEYCQFEN  148 (181)
Q Consensus       111 ~c~~~~c~~~~~C~~-~~~~~~~C~C~~g~~g~~c~~~~  148 (181)
                      .|...+|.++++|+. .....|+|.|++||+|+.|+..+
T Consensus         6 ~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~d   44 (48)
T d1nqlb_           6 LSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD   44 (48)
T ss_dssp             STTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcCc
Confidence            444567888889963 14467999999999999998533

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=2.1e-05  Score=38.59  Aligned_cols=24  Identities=21%  Similarity=0.587  Sum_probs=22.0

Q ss_pred             CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         156 NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       156 ~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +.|+.++.|+|++|+  |.|.|++||
T Consensus         7 ~~C~~~A~C~Nt~Gs--y~C~C~~Gy   30 (40)
T d1gl4a2           7 HQCSVHAECRDYATG--FCCRCVANY   30 (40)
T ss_dssp             GGSCTTEEEEECSSC--EEEEECTTE
T ss_pred             CCCCCCCEeecCCCC--eEeECCCCC
Confidence            578889999999999  999999997

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4e-05  Score=37.47  Aligned_cols=31  Identities=29%  Similarity=0.806  Sum_probs=23.8

Q ss_pred             cCcCCCC-CCCCCCCEEecCCCCeeEeCCCCCcC
Q psy9688          41 KVDHCLT-DPCLGHGTCINRSDRYQCLCTPRYSG   73 (181)
Q Consensus        41 ~~~~c~~-~~c~~~~~C~~~~~~~~C~c~~g~~g   73 (181)
                      |+|+|.. .+|.  ..|+|..++|.|.|++||.+
T Consensus         1 DidEC~~~~~C~--~~C~N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           1 DIDECENGGFCS--GVCHNLPGTFECICGPDSAL   32 (40)
T ss_dssp             ECCHHHHCSSCS--SEEEECSSSEEEEECSSSSC
T ss_pred             CccccCCCcCcc--CEeeCCCCCeEeECCCCCee
Confidence            3556632 4564  58999999999999999974

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=6.5e-05  Score=37.90  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             CCCCCCC-CC-CCCCCEEeeCCCCcceEEecCCCC
Q psy9688         149 SAACVTL-NP-CQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       149 ~~~c~~~-~~-C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      |++|+.. +. +.....|+|++|+  |.|.|++||
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gs--y~C~C~~Gy   33 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGG--YYCSCRVGY   33 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTE--EEEECCTTE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCC--EEEeCCCCC
Confidence            4667541 11 2224499999999  999999997

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=8.4e-05  Score=36.41  Aligned_cols=29  Identities=21%  Similarity=0.551  Sum_probs=23.3

Q ss_pred             CCCCCC-CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         149 SAACVT-LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       149 ~~~c~~-~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +++|.. .+.|.+  +|++++++  |.|.|++||
T Consensus         2 ~neC~~~nggC~h--~C~n~~g~--~~C~C~~Gy   31 (40)
T d3bpse1           2 TNECLDNNGGCSH--VCNDLKIG--YECLCPDGF   31 (40)
T ss_dssp             SCGGGTGGGGCSS--EEEECSSS--EEEECCTTC
T ss_pred             cccCCCCCCCCcC--EEEcCCCC--EEEECCCCC
Confidence            456655 356876  99999999  899999997

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00012  Score=36.86  Aligned_cols=31  Identities=16%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             CCCCCCC-C-CCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         149 SAACVTL-N-PCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       149 ~~~c~~~-~-~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      |++|+.. . .+.-..+|+|++|+  |.|.|++||
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gs--y~C~C~~Gy   33 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGG--FYCSCRAGY   33 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTE--EEEECCTTE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCC--eEEECCCCC
Confidence            4667651 1 11234499999999  999999997

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=9.1e-05  Score=36.54  Aligned_cols=29  Identities=31%  Similarity=0.918  Sum_probs=23.0

Q ss_pred             CcCCCC-CCCCCCCEEecCCCCeeEeCCCCCc
Q psy9688          42 VDHCLT-DPCLGHGTCINRSDRYQCLCTPRYS   72 (181)
Q Consensus        42 ~~~c~~-~~c~~~~~C~~~~~~~~C~c~~g~~   72 (181)
                      +|+|.. .+|.  ..|+|..++|.|.|++||.
T Consensus         1 idEC~~~~~C~--~~C~n~~Gsy~C~C~~Gy~   30 (41)
T d1i0ua2           1 IDECQDPDTCS--QLCVNLEGGYKCQCEEGFQ   30 (41)
T ss_dssp             CCTTTTTTSCS--SCEECSSSCCEECCCTTEE
T ss_pred             CccCCCCCCCC--CEeECCCCCEEeECCCCCe
Confidence            467743 3464  5899999999999999997

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=8.4e-05  Score=36.36  Aligned_cols=26  Identities=31%  Similarity=0.796  Sum_probs=22.9

Q ss_pred             CCCCCCEEeeCCCCceEeecCCCCccC
Q psy9688         116 PCLNDCVCVDDGNLSFYCNCTEDFTGE  142 (181)
Q Consensus       116 ~c~~~~~C~~~~~~~~~C~C~~g~~g~  142 (181)
                      .|+.+++|++ ..++|.|.|.+||.|.
T Consensus         8 ~C~~~A~C~N-t~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           8 QCSVHAECRD-YATGFCCRCVANYTGN   33 (40)
T ss_dssp             GSCTTEEEEE-CSSCEEEEECTTEEEC
T ss_pred             CCCCCCEeec-CCCCeEeECCCCCcCC
Confidence            5777899999 8999999999999854

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00018  Score=35.55  Aligned_cols=28  Identities=29%  Similarity=0.599  Sum_probs=22.0

Q ss_pred             CCCCC--CCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         150 AACVT--LNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       150 ~~c~~--~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++|..  .+.|.+  .|++++|+  |.|.|++||
T Consensus         1 dEC~~~~~~~C~~--~C~n~~Gs--y~C~C~~Gy   30 (42)
T d1nzia2           1 NECTDFVDVPCSH--FCNNFIGG--YFCSCPPEY   30 (42)
T ss_dssp             CTTTC-CCCCSSS--EEEEETTE--EEEECCTTC
T ss_pred             CCCCCCCCcCCCC--EeecCCCC--EEEeCCCCC
Confidence            35543  246776  99999999  999999997

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.00017  Score=36.33  Aligned_cols=20  Identities=25%  Similarity=0.705  Sum_probs=18.1

Q ss_pred             CCEEeeCCCCceEeecCCCCc
Q psy9688         120 DCVCVDDGNLSFYCNCTEDFT  140 (181)
Q Consensus       120 ~~~C~~~~~~~~~C~C~~g~~  140 (181)
                      ...|++ +.++|+|.|++||.
T Consensus        15 ~~~C~N-t~gsy~C~C~~Gy~   34 (45)
T d1nt0a3          15 DHYCHN-YLGGYYCSCRVGYI   34 (45)
T ss_dssp             SSEEEE-ETTEEEEECCTTEE
T ss_pred             CCEeec-CCCCEEEeCCCCCE
Confidence            459999 89999999999996

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00024  Score=35.74  Aligned_cols=21  Identities=29%  Similarity=0.740  Sum_probs=18.6

Q ss_pred             CCCEEeeCCCCceEeecCCCCc
Q psy9688         119 NDCVCVDDGNLSFYCNCTEDFT  140 (181)
Q Consensus       119 ~~~~C~~~~~~~~~C~C~~g~~  140 (181)
                      ....|++ +.++|.|.|++||.
T Consensus        14 C~~~C~N-t~Gsy~C~C~~Gy~   34 (45)
T d1szba2          14 CDHHCHN-HLGGFYCSCRAGYV   34 (45)
T ss_dssp             SSSEEEE-ETTEEEEECCTTEE
T ss_pred             CCCCCcc-CCCCeEEECCCCCe
Confidence            3469999 99999999999996

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00056  Score=31.69  Aligned_cols=29  Identities=34%  Similarity=0.764  Sum_probs=23.0

Q ss_pred             CCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         150 AACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       150 ~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ++|...++|.+ ++|.|..|+  |.|.|.+||
T Consensus         2 dECsignpCGn-GTCtNviGg--Fec~C~~GF   30 (39)
T d1emoa2           2 DECSVGNPCGN-GTCKNVIGG--FECTCEEGF   30 (39)
T ss_dssp             CGGGTTCSSSS-SCEEECSSS--EEECCSSSS
T ss_pred             CccccCCccCC-ceeeecccc--eEEeecCCc
Confidence            45544478855 779999999  999999987

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00062  Score=33.15  Aligned_cols=30  Identities=27%  Similarity=0.747  Sum_probs=22.9

Q ss_pred             CcCCCCCC--CCCCCEEecCCCCeeEeCCCCCcC
Q psy9688          42 VDHCLTDP--CLGHGTCINRSDRYQCLCTPRYSG   73 (181)
Q Consensus        42 ~~~c~~~~--c~~~~~C~~~~~~~~C~c~~g~~g   73 (181)
                      +++|....  |.  ..|++.+++|.|.|++||..
T Consensus         2 ~neC~~~nggC~--h~C~n~~g~~~C~C~~Gy~L   33 (40)
T d3bpse1           2 TNECLDNNGGCS--HVCNDLKIGYECLCPDGFQL   33 (40)
T ss_dssp             SCGGGTGGGGCS--SEEEECSSSEEEECCTTCCE
T ss_pred             cccCCCCCCCCc--CEEEcCCCCEEEECCCCCEE
Confidence            35664433  54  48999999999999999973

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0016  Score=32.64  Aligned_cols=30  Identities=37%  Similarity=0.841  Sum_probs=23.9

Q ss_pred             CCCCCCCCEEe--cCCCCeeEeCCCCCcCCCCC
Q psy9688          47 TDPCLGHGTCI--NRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        47 ~~~c~~~~~C~--~~~~~~~C~c~~g~~g~~c~   77 (181)
                      ..+|.+ |.|.  .....+.|+|++||+|.+|+
T Consensus        11 ~~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe   42 (46)
T d1k36a_          11 NGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             CSSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             CCcCcC-CEEEEeCCCCccEeECCCCceecCce
Confidence            357887 6675  34557999999999999997

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0021  Score=32.81  Aligned_cols=34  Identities=18%  Similarity=0.422  Sum_probs=26.7

Q ss_pred             CCCCCCCEEeeCCCCceEeecCCCCccCCccccC
Q psy9688         115 NPCLNDCVCVDDGNLSFYCNCTEDFTGEYCQFEN  148 (181)
Q Consensus       115 ~~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~  148 (181)
                      ..|.+++.|.......+.|.|+.||+|..|+..+
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~~~   47 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVD   47 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTTCEEC
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCCCccce
Confidence            4577888885436677899999999999998533

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.002  Score=32.86  Aligned_cols=31  Identities=23%  Similarity=0.567  Sum_probs=25.4

Q ss_pred             CCCCCCCCEEe-cCCCCeeEeCCCCCcCCCCC
Q psy9688          47 TDPCLGHGTCI-NRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        47 ~~~c~~~~~C~-~~~~~~~C~c~~g~~g~~c~   77 (181)
                      ...|.+++.|. ...+.+.|+|+.||+|..|+
T Consensus        13 ~~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe   44 (50)
T d1ioxa_          13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CCCccCCeEEEeCCCCCcEeECCCCCeeCCCc
Confidence            35688888885 45556899999999999997

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0027  Score=31.10  Aligned_cols=22  Identities=41%  Similarity=0.896  Sum_probs=19.4

Q ss_pred             CCCCCCEEecCCCCeeEeCCCCCc
Q psy9688          49 PCLGHGTCINRSDRYQCLCTPRYS   72 (181)
Q Consensus        49 ~c~~~~~C~~~~~~~~C~c~~g~~   72 (181)
                      +|.  ..|++..++|.|.|+.||.
T Consensus        10 ~C~--~~C~n~~Gsy~C~C~~Gy~   31 (42)
T d1nzia2          10 PCS--HFCNNFIGGYFCSCPPEYF   31 (42)
T ss_dssp             CSS--SEEEEETTEEEEECCTTCE
T ss_pred             CCC--CEeecCCCCEEEeCCCCCE
Confidence            465  4899999999999999997

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0024  Score=32.39  Aligned_cols=30  Identities=27%  Similarity=0.678  Sum_probs=24.1

Q ss_pred             CCCCCCCEEe-cCCCCeeEeCCCCCcCCCCC
Q psy9688          48 DPCLGHGTCI-NRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        48 ~~c~~~~~C~-~~~~~~~C~c~~g~~g~~c~   77 (181)
                      ..|.+++.|. .....+.|+|++||+|.+|+
T Consensus        13 ~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe   43 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACVCHSGYVGARCE   43 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CEeeCCeEEecCCCCCcEeECCCCCEecCCc
Confidence            4588877774 34557899999999999997

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0057  Score=30.95  Aligned_cols=31  Identities=16%  Similarity=0.381  Sum_probs=24.1

Q ss_pred             CCCCCCEEeeCCCCceEeecCCCCccCCccc
Q psy9688         116 PCLNDCVCVDDGNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       116 ~c~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  146 (181)
                      -|.+++.|.......+.|.|++||+|..|+.
T Consensus        14 yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~   44 (49)
T d1moxc_          14 FCFHGTCRFLVQEDKPACVCHSGYVGARCEH   44 (49)
T ss_dssp             SSTTEEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             EeeCCeEEecCCCCCcEeECCCCCEecCCcc
Confidence            4677666643256778999999999999985

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.011  Score=28.16  Aligned_cols=30  Identities=17%  Similarity=0.543  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         148 NSAACVTLNPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       148 ~~~~c~~~~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      .+|.|.. ..|..  .|.....+ .|.|+|.+||
T Consensus         3 ~vDPCf~-~~CE~--qCqP~~~~-~Y~CiCaeGF   32 (43)
T d1dx5i1           3 PVDPCFR-ANCEY--QCQPLDQT-SYLCVCAEGF   32 (43)
T ss_dssp             CCCGGGG-CCCSS--EEEECSSS-CEEEECCTTE
T ss_pred             ccccccC-CCcce--eeeeCCCC-cceEEecccc
Confidence            5678877 78887  89755543 5999999997

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.015  Score=28.85  Aligned_cols=30  Identities=30%  Similarity=0.711  Sum_probs=22.7

Q ss_pred             CCCCCCCEEe-eCCCCceEeecCCCCccCCcc
Q psy9688         115 NPCLNDCVCV-DDGNLSFYCNCTEDFTGEYCQ  145 (181)
Q Consensus       115 ~~c~~~~~C~-~~~~~~~~C~C~~g~~g~~c~  145 (181)
                      ..|.+ +.|. ......+.|.|++||+|..|+
T Consensus        12 ~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe   42 (46)
T d1k36a_          12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             CcCcC-CEEEEeCCCCccEeECCCCceecCce
Confidence            46776 5663 225577999999999999997

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.023  Score=26.35  Aligned_cols=31  Identities=39%  Similarity=0.980  Sum_probs=23.9

Q ss_pred             CCCCCEEecC---CCCeeEeCCCCCcCCCCCCCC
Q psy9688          50 CLGHGTCINR---SDRYQCLCTPRYSGNNCEKDN   80 (181)
Q Consensus        50 c~~~~~C~~~---~~~~~C~c~~g~~g~~c~~~~   80 (181)
                      |.++++|+.-   .+...|.|+.+|.|..|+++.
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt   37 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   37 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEEecc
Confidence            6778888752   345689999999999998653

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.029  Score=26.01  Aligned_cols=30  Identities=37%  Similarity=0.940  Sum_probs=21.5

Q ss_pred             CCCCCEEeeC--CCCceEeecCCCCccCCccc
Q psy9688         117 CLNDCVCVDD--GNLSFYCNCTEDFTGEYCQF  146 (181)
Q Consensus       117 c~~~~~C~~~--~~~~~~C~C~~g~~g~~c~~  146 (181)
                      |.++++|+.-  ......|.|+.+|.|.+|+.
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEi   35 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI   35 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSCE
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEEe
Confidence            5666777640  22446799999999999974

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.016  Score=29.39  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=18.6

Q ss_pred             CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         156 NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       156 ~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +.|.+  +|++++++  |.|.|++||
T Consensus         7 GgC~~--~C~~~~g~--~~C~C~~Gy   28 (50)
T d1autl2           7 GGCTH--YCLEEVGW--RRCSCAPGY   28 (50)
T ss_dssp             GGCSS--EEEECSSS--EEEECCTTE
T ss_pred             CCccc--EeecCCCC--eEEECCCCC
Confidence            34665  89999998  899999987

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.0099  Score=28.77  Aligned_cols=28  Identities=32%  Similarity=0.922  Sum_probs=21.9

Q ss_pred             CCCCCCEEec--CCCCeeEeCCCCCcCCCCC
Q psy9688          49 PCLGHGTCIN--RSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        49 ~c~~~~~C~~--~~~~~~C~c~~g~~g~~c~   77 (181)
                      -|.+ |.|.-  ......|+|..||+|.+|+
T Consensus         9 yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_           9 FCIH-GECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             CCSS-EEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             EeEC-cEEeecCcCCCceeECCCCCeecCcc
Confidence            4666 88853  4456799999999999986

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.037  Score=25.38  Aligned_cols=24  Identities=42%  Similarity=0.840  Sum_probs=20.1

Q ss_pred             CCCCCCCEEeeCCCCceEeecCCCCc
Q psy9688         115 NPCLNDCVCVDDGNLSFYCNCTEDFT  140 (181)
Q Consensus       115 ~~c~~~~~C~~~~~~~~~C~C~~g~~  140 (181)
                      +||.+ ++|++ ..+.|.|.|..||.
T Consensus         8 npCGn-GTCtN-viGgFec~C~~GFe   31 (39)
T d1emoa2           8 NPCGN-GTCKN-VIGGFECTCEEGFE   31 (39)
T ss_dssp             CSSSS-SCEEE-CSSSEEECCSSSSC
T ss_pred             CccCC-ceeee-cccceEEeecCCcC
Confidence            45654 78999 89999999999985

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.062  Score=27.06  Aligned_cols=24  Identities=17%  Similarity=0.431  Sum_probs=19.8

Q ss_pred             CEEeeCCCCceEeecCCCCc----cCCcc
Q psy9688         121 CVCVDDGNLSFYCNCTEDFT----GEYCQ  145 (181)
Q Consensus       121 ~~C~~~~~~~~~C~C~~g~~----g~~c~  145 (181)
                      ..|++ +.++|+|.|+.||.    ++.|.
T Consensus        11 ~~C~~-~~g~~~C~C~~Gy~L~~D~~tC~   38 (50)
T d1autl2          11 HYCLE-EVGWRRCSCAPGYKLGDDLLQCH   38 (50)
T ss_dssp             SEEEE-CSSSEEEECCTTEEECTTSSCEE
T ss_pred             cEeec-CCCCeEEECCCCCEECCCCCccc
Confidence            48888 88999999999996    55565

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.025  Score=28.76  Aligned_cols=22  Identities=18%  Similarity=0.671  Sum_probs=18.6

Q ss_pred             CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         156 NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       156 ~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +.|.+  .|++++++  |.|.|++||
T Consensus         8 GgC~h--~C~n~~g~--~~C~C~~Gy   29 (51)
T d2p3ua1           8 GDCDQ--FCHEEQNS--VVCSCARGY   29 (51)
T ss_dssp             GGCSS--EEEEETTE--EEEECCTTE
T ss_pred             CCccc--EeecCCCC--eEeEcCCCC
Confidence            34666  89999998  889999987

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.46  E-value=0.034  Score=28.22  Aligned_cols=23  Identities=17%  Similarity=0.696  Sum_probs=18.6

Q ss_pred             EEeeCCCCceEeecCCCCc----cCCcc
Q psy9688         122 VCVDDGNLSFYCNCTEDFT----GEYCQ  145 (181)
Q Consensus       122 ~C~~~~~~~~~C~C~~g~~----g~~c~  145 (181)
                      .|++ ..+.|+|.|++||.    +..|.
T Consensus        11 ~C~~-~~~~~~C~C~~Gy~L~~D~~tC~   37 (51)
T d1kigl_          11 FCRE-ERSEVRCSCAHGYVLGDDSKSCV   37 (51)
T ss_dssp             CCCE-ETTEECCCCCTTEEECTTSSCEE
T ss_pred             EeEc-CCCcEEeEcCCCCEECCCCCccc
Confidence            6777 78899999999996    55565

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.049  Score=26.20  Aligned_cols=22  Identities=36%  Similarity=1.158  Sum_probs=19.0

Q ss_pred             CCCEEecCCCCeeEeCCCCCcCCCCC
Q psy9688          52 GHGTCINRSDRYQCLCTPRYSGNNCE   77 (181)
Q Consensus        52 ~~~~C~~~~~~~~C~c~~g~~g~~c~   77 (181)
                      .+++|+..    .|+|.+||+|..|+
T Consensus        19 ~hG~C~~G----~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          19 GRGLCFCG----KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HHEEEETT----EEEECTTCCTTTTC
T ss_pred             CCCeEECC----EEEcCCCCcccCcc
Confidence            36889876    89999999999886

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.21  E-value=0.021  Score=29.03  Aligned_cols=22  Identities=23%  Similarity=0.664  Sum_probs=17.5

Q ss_pred             CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         156 NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       156 ~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      ..|.+  +|++++++  |.|.|++||
T Consensus         6 GgC~h--~C~~~~~~--~~C~C~~Gy   27 (51)
T d1kigl_           6 GGCDQ--FCREERSE--VRCSCAHGY   27 (51)
T ss_dssp             TSSSS--CCCEETTE--ECCCCCTTE
T ss_pred             CCccc--EeEcCCCc--EEeEcCCCC
Confidence            34665  78889988  889999987

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.079  Score=26.76  Aligned_cols=24  Identities=29%  Similarity=0.775  Sum_probs=19.7

Q ss_pred             CEEeeCCCCceEeecCCCCc----cCCcc
Q psy9688         121 CVCVDDGNLSFYCNCTEDFT----GEYCQ  145 (181)
Q Consensus       121 ~~C~~~~~~~~~C~C~~g~~----g~~c~  145 (181)
                      ..|++ ..++|+|.|++||.    ++.|.
T Consensus        12 h~C~n-~~g~~~C~C~~Gy~L~~D~~tC~   39 (51)
T d2p3ua1          12 QFCHE-EQNSVVCSCARGYTLADNGKACI   39 (51)
T ss_dssp             SEEEE-ETTEEEEECCTTEEECTTSSCEE
T ss_pred             cEeec-CCCCeEeEcCCCCEECCCCCccc
Confidence            38888 88999999999997    55565

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.16  Score=24.47  Aligned_cols=25  Identities=40%  Similarity=1.055  Sum_probs=21.2

Q ss_pred             CCCCCCEEecCCCCeeEeC-CCCCcCCCCC
Q psy9688          49 PCLGHGTCINRSDRYQCLC-TPRYSGNNCE   77 (181)
Q Consensus        49 ~c~~~~~C~~~~~~~~C~c-~~g~~g~~c~   77 (181)
                      .|..+++|+-.    .|+| .++|.|..|+
T Consensus        12 iCng~G~C~cG----~C~C~~~gy~G~~Ce   37 (43)
T d1jv2b5          12 LCSGRGKCECG----SCVCIQPGSYGDTCE   37 (43)
T ss_dssp             GGGGTEEEETT----EEEECCSSCBSTTSC
T ss_pred             EECCCCEEECC----EeEeCCCCccCCccc
Confidence            38888999876    8999 4799999997

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.18  Score=25.29  Aligned_cols=28  Identities=25%  Similarity=0.609  Sum_probs=18.9

Q ss_pred             CCCCC-CCCCCCCCEEeeCC------CCcceEEecCCCC
Q psy9688         150 AACVT-LNPCQNNATCVASP------GEKQITCLCLKEV  181 (181)
Q Consensus       150 ~~c~~-~~~C~~~~~C~~~~------g~~~~~C~C~~g~  181 (181)
                      ++|.. ...|.+  +|+.++      ++  |.|.|+.||
T Consensus         5 neC~~~NGGC~h--~Cl~~p~~~n~~~~--y~C~C~~G~   39 (50)
T d1ijqa2           5 ERTTLSNGGCQY--LCLPAPQINPHSPK--FTCACPDGM   39 (50)
T ss_dssp             SSSSSGGGGCSS--EEEECCCCSTTCCS--EEEECCTTC
T ss_pred             cccCCCCCCCcC--ccCCCcCcccCCCC--EEEeCCCCC
Confidence            34543 234776  897544      55  999999997

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.17  E-value=0.16  Score=25.99  Aligned_cols=30  Identities=20%  Similarity=0.626  Sum_probs=19.5

Q ss_pred             CCCCCEEee-CCCCceEe-ecCCCCccCCccc
Q psy9688         117 CLNDCVCVD-DGNLSFYC-NCTEDFTGEYCQF  146 (181)
Q Consensus       117 c~~~~~C~~-~~~~~~~C-~C~~g~~g~~c~~  146 (181)
                      |.++++|.. ...+...| .|.++|.|..|+.
T Consensus         3 C~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~   34 (55)
T d1kloa1           3 CPGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL   34 (55)
T ss_dssp             SCTTCCEEECSSSCCEEECSCCTTEESTTSCE
T ss_pred             CcCCCccceeCCCCCEEcCCCCCCCccCcccc
Confidence            444455532 13455677 5999999999974

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=0.33  Score=24.94  Aligned_cols=23  Identities=22%  Similarity=0.691  Sum_probs=17.4

Q ss_pred             CCCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         156 NPCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       156 ~~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      +.|.+  +|++++++ .+.|.|++||
T Consensus         8 GgC~h--~C~~~~~~-~~~C~C~~Gy   30 (57)
T d1rfnb_           8 GRCEQ--FCKNSADN-KVVCSCTEGY   30 (57)
T ss_dssp             GGCSS--EEEECTTS-CEEEECCTTE
T ss_pred             CCccc--EeeeCCCC-CeEeECCCCC
Confidence            34666  89988752 3889999987

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.53  E-value=0.34  Score=24.49  Aligned_cols=22  Identities=23%  Similarity=0.694  Sum_probs=17.1

Q ss_pred             CCCCCCEEeeCCCCcceEEecCCCC
Q psy9688         157 PCQNNATCVASPGEKQITCLCLKEV  181 (181)
Q Consensus       157 ~C~~~~~C~~~~g~~~~~C~C~~g~  181 (181)
                      .|.+  .|++++++ .+.|.|+.||
T Consensus         8 GC~h--~C~~~~~~-~~~C~C~~Gy   29 (53)
T d2bz6l1           8 GCEQ--YCSDHTGT-KRSCRCHEGY   29 (53)
T ss_dssp             GCSS--EEEEETTT-EEEEECCTTE
T ss_pred             CCcC--EeeeCCCC-CEEeECCCCC
Confidence            4666  89988764 4789999987