Psyllid ID: psy9727

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
MFKILFTVIALIWQVVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSKGPFINL
cHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcEEEEccEEEEcccccccEEEEEEccccccccEEEEEEEEEEccccccccccEEEEEEcccccccccccccccccEEEEEEEccccccccccccccEEEEEEcccccccccccccccEEEEEEEcccccccccccEEEcEEEEEEEccccccccccccccccccccHHcccccccccEEEEEEEccEEEEEEEcccccccccccc
cHHHHHHHHHHHHHHHcccccccccHHEEEEEcccccccccccccccEEccccEEEcccEEEEcccccccccEEEEcccEccccEEEEEEEEEEcccccccccEEEEEEEcccccccccccccccccEEEEEEEccccccccccccccEEEEEEccccEEccccccccccEccccHHHHcccccccEEEEEEEEEEHcccccccccccEEEEEEccccccccccccccEEEEEEEEccEEEEEccEEccccccHccc
MFKILFTVIALIWQVVAQEAQWNTEDFLKRHHsmvkpyltsglsipywdvHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGkgkelfgdgMAFWYVRdrmeggpvfgnkdffSGLGVIIDTysnhngehnhnhpylsamvnngslhydhdmdgtHTQLAVIIDTysnhngehnhnhpylsamvnngslhydhdmdgthtqlagcecklrnlnhdTHIAiryedenltvsgvndllskgpfinl
MFKILFTVIALIWQVVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRyedenltvsgvndllskgpfinl
MFKILFTVIALIWQVVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSKGPFINL
*FKILFTVIALIWQVVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLL********
MFKILFTVIALIWQVVAQE************HSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLS***FINL
MFKILFTVIALIWQVVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSKGPFINL
MFKILFTVIALIWQVVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSKGPF**L
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFKILFTVIALIWQVVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSKGPFINL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query257 2.2.26 [Sep-21-2011]
P59481 347 VIP36-like protein OS=Mus yes N/A 0.677 0.501 0.415 1e-44
Q9H0V9 348 VIP36-like protein OS=Hom yes N/A 0.688 0.508 0.414 2e-44
Q5RCF0 348 VIP36-like protein OS=Pon yes N/A 0.688 0.508 0.414 3e-44
Q2HJD1 348 VIP36-like protein OS=Bos yes N/A 0.688 0.508 0.409 4e-44
P49256 356 Vesicular integral-membra no N/A 0.762 0.550 0.4 7e-40
Q12907 356 Vesicular integral-membra no N/A 0.715 0.516 0.400 1e-39
Q9DBH5 358 Vesicular integral-membra no N/A 0.715 0.513 0.396 2e-39
P49257 510 Protein ERGIC-53 OS=Homo no N/A 0.642 0.323 0.321 5e-24
Q9TU32 510 Protein ERGIC-53 OS=Chlor N/A N/A 0.642 0.323 0.321 6e-24
Q62902 517 Protein ERGIC-53 OS=Rattu no N/A 0.642 0.319 0.310 2e-23
>sp|P59481|LMA2L_MOUSE VIP36-like protein OS=Mus musculus GN=Lman2l PE=2 SV=1 Back     alignment and function desciption
 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 123/219 (56%), Gaps = 45/219 (20%)

Query: 26  DFLKRHHSMVKPYLTSGLSIP-YWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNN 84
           ++LKR HS+ KPY   G S    W++ G A+  + Y+RLT D+QS+ GA+WN VP ++ +
Sbjct: 48  EYLKREHSLSKPYQGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLKD 107

Query: 85  WEVQITLKIHGKGKE-LFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEH 143
           WE+Q+  KIHG+GK+ L GDG+A WY +DRM+ GPVFGN D F GLGV +DTY N   +H
Sbjct: 108 WELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQH 167

Query: 144 NHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLH 203
               PY+SAMVNNGSL YDH+ DG  T                                 
Sbjct: 168 ERVFPYISAMVNNGSLSYDHERDGRPT--------------------------------- 194

Query: 204 YDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTV 242
                     +L GC   +RN+ +DT + IRY   +LT+
Sbjct: 195 ----------ELGGCTAIVRNIRYDTFLVIRYVKRHLTI 223
May be involved in the regulation of export from the endoplasmic reticulum of a subset of glycoproteins. May function as a regulator of ERGIC-53.
Mus musculus (taxid: 10090)
>sp|Q9H0V9|LMA2L_HUMAN VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 Back     alignment and function description
>sp|Q5RCF0|LMA2L_PONAB VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 Back     alignment and function description
>sp|Q2HJD1|LMA2L_BOVIN VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 Back     alignment and function description
>sp|P49256|LMAN2_CANFA Vesicular integral-membrane protein VIP36 OS=Canis familiaris GN=LMAN2 PE=1 SV=1 Back     alignment and function description
>sp|Q12907|LMAN2_HUMAN Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2 PE=1 SV=1 Back     alignment and function description
>sp|Q9DBH5|LMAN2_MOUSE Vesicular integral-membrane protein VIP36 OS=Mus musculus GN=Lman2 PE=2 SV=2 Back     alignment and function description
>sp|P49257|LMAN1_HUMAN Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2 Back     alignment and function description
>sp|Q9TU32|LMAN1_CHLAE Protein ERGIC-53 OS=Chlorocebus aethiops GN=LMAN1 PE=2 SV=1 Back     alignment and function description
>sp|Q62902|LMAN1_RAT Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
345483434335 PREDICTED: vesicular integral-membrane p 0.723 0.555 0.541 6e-69
307207161322 VIP36-like protein [Harpegnathos saltato 0.704 0.562 0.535 1e-68
322801014332 hypothetical protein SINV_09590 [Solenop 0.785 0.608 0.502 1e-68
357607146328 putative vesicular mannose-binding lecti 0.750 0.588 0.516 2e-68
380016416324 PREDICTED: vesicular integral-membrane p 0.704 0.558 0.540 4e-68
91090624324 PREDICTED: similar to vesicular mannose- 0.704 0.558 0.553 4e-68
383866233324 PREDICTED: vesicular integral-membrane p 0.750 0.595 0.512 9e-68
66525147324 PREDICTED: vesicular integral-membrane p 0.766 0.608 0.512 2e-67
350403942323 PREDICTED: vesicular integral-membrane p 0.750 0.597 0.504 3e-67
315452155327 vesicular mannose-binding lectin-like pr 0.750 0.590 0.506 6e-67
>gi|345483434|ref|XP_001602865.2| PREDICTED: vesicular integral-membrane protein VIP36-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 124/229 (54%), Positives = 155/229 (67%), Gaps = 43/229 (18%)

Query: 15  VVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAI 74
           +VA  A+WNT D++KR HS+++PY  SG++IPYWD  G  + ++NY+RLT D QS+ GAI
Sbjct: 25  LVAVGAEWNTNDYMKREHSLIRPYQGSGMTIPYWDFMGSTMVTNNYIRLTPDAQSQQGAI 84

Query: 75  WNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIID 134
           WNTVP  + NWE+Q+  K+HGKG++LFGDG+A WY ++RM+ GPVFG+KD+F+GL     
Sbjct: 85  WNTVPCNVRNWELQVHFKVHGKGRDLFGDGLAIWYSKERMQPGPVFGSKDYFNGL----- 139

Query: 135 TYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLS 194
                                                 AVI+DTYSNHNG HNH HPY+S
Sbjct: 140 --------------------------------------AVILDTYSNHNGPHNHQHPYIS 161

Query: 195 AMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVS 243
           AM+NNGSLHYDHD DGTHTQLAGCE K RNL HDTHI IRYE + LTVS
Sbjct: 162 AMINNGSLHYDHDRDGTHTQLAGCEAKFRNLEHDTHITIRYERDTLTVS 210

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307207161|gb|EFN84951.1| VIP36-like protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322801014|gb|EFZ21795.1| hypothetical protein SINV_09590 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|357607146|gb|EHJ65368.1| putative vesicular mannose-binding lectin [Danaus plexippus] Back     alignment and taxonomy information
>gi|380016416|ref|XP_003692181.1| PREDICTED: vesicular integral-membrane protein VIP36-like [Apis florea] Back     alignment and taxonomy information
>gi|91090624|ref|XP_973445.1| PREDICTED: similar to vesicular mannose-binding lectin [Tribolium castaneum] gi|270013907|gb|EFA10355.1| hypothetical protein TcasGA2_TC012578 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383866233|ref|XP_003708575.1| PREDICTED: vesicular integral-membrane protein VIP36-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|66525147|ref|XP_625194.1| PREDICTED: vesicular integral-membrane protein VIP36 [Apis mellifera] Back     alignment and taxonomy information
>gi|350403942|ref|XP_003486958.1| PREDICTED: vesicular integral-membrane protein VIP36-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|315452155|gb|ADU25045.1| vesicular mannose-binding lectin-like protein [Antheraea pernyi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
FB|FBgn0039160329 CG5510 [Drosophila melanogaste 0.618 0.483 0.616 9.9e-55
WB|WBGene00002071347 ile-2 [Caenorhabditis elegans 0.568 0.420 0.589 2.9e-48
MGI|MGI:2443010347 Lman2l "lectin, mannose-bindin 0.571 0.423 0.536 1.9e-42
RGD|1311393349 Lman2l "lectin, mannose-bindin 0.571 0.421 0.536 1.9e-42
UNIPROTKB|E2RDW4351 LMAN2L "Uncharacterized protei 0.579 0.424 0.525 8.4e-42
UNIPROTKB|Q9H0V9348 LMAN2L "VIP36-like protein" [H 0.579 0.428 0.529 8.4e-42
UNIPROTKB|Q2HJD1348 LMAN2L "VIP36-like protein" [B 0.579 0.428 0.523 1.7e-41
UNIPROTKB|F1STC9273 LOC100511809 "Uncharacterized 0.579 0.545 0.516 1.2e-40
ZFIN|ZDB-GENE-070209-149354 lman2 "lectin, mannose-binding 0.785 0.570 0.430 2.6e-40
UNIPROTKB|J9P396 384 LMAN2 "Vesicular integral-memb 0.766 0.513 0.434 6.8e-40
FB|FBgn0039160 CG5510 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 98/159 (61%), Positives = 119/159 (74%)

Query:    15 VVAQEAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAI 74
             VV  E      D++KR HS+V+P+   G+ +P+WD  G  + +SNY+RLT DLQS+ GA+
Sbjct:    22 VVLGEDMPREPDYMKREHSLVRPFQGVGVILPHWDFLGNTMVTSNYIRLTPDLQSKSGAL 81

Query:    75 WNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIID 134
             WN  PV   NWEV +  K+HGKG ELFGDG A WY ++RM+ GPVFG+KD FSGL +I+D
Sbjct:    82 WNYSPVMTRNWEVHVGFKVHGKGTELFGDGFAIWYTKERMQTGPVFGSKDHFSGLAIILD 141

Query:   135 TYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLA 173
             TYSNHNG HNH HPYLSAMVNNGS  YDHD DGTHTQLA
Sbjct:   142 TYSNHNGPHNHQHPYLSAMVNNGSWSYDHDRDGTHTQLA 180
GO:0016020 "membrane" evidence=IEA
WB|WBGene00002071 ile-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:2443010 Lman2l "lectin, mannose-binding 2-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311393 Lman2l "lectin, mannose-binding 2-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDW4 LMAN2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H0V9 LMAN2L "VIP36-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJD1 LMAN2L "VIP36-like protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1STC9 LOC100511809 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070209-149 lman2 "lectin, mannose-binding 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9P396 LMAN2 "Vesicular integral-membrane protein VIP36" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
cd06901248 cd06901, lectin_VIP36_VIPL, VIP36 and VIPL type 1 2e-90
pfam03388226 pfam03388, Lectin_leg-like, Legume-like lectin fam 2e-63
cd07308218 cd07308, lectin_leg-like, legume-like lectins: ERG 9e-41
cd06902225 cd06902, lectin_ERGIC-53_ERGL, ERGIC-53 and ERGL t 7e-40
cd01951223 cd01951, lectin_L-type, legume lectins 5e-07
cd06903215 cd06903, lectin_EMP46_EMP47, EMP46 and EMP47 type 1e-06
>gnl|CDD|173889 cd06901, lectin_VIP36_VIPL, VIP36 and VIPL type 1 transmembrane proteins, lectin domain Back     alignment and domain information 
 Score =  267 bits (684), Expect = 2e-90
 Identities = 104/217 (47%), Positives = 127/217 (58%), Gaps = 43/217 (19%)

Query: 27  FLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWE 86
           +LKR HS++KPY   G S+P WD  G  + +S Y+RLT D QS+ G+IWN VP Y+ +WE
Sbjct: 1   YLKREHSLIKPYQGVGSSMPLWDFLGSTMVTSQYIRLTPDHQSKQGSIWNRVPCYLRDWE 60

Query: 87  VQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHN 146
           + +  K+HG GK LFGDG A WY ++RM+ GPVFG+KD F GL                 
Sbjct: 61  MHVHFKVHGSGKNLFGDGFAIWYTKERMQPGPVFGSKDNFHGL----------------- 103

Query: 147 HPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDH 206
                                     A+  DTYSN NGEH H HPY+SAMVNNGSL YDH
Sbjct: 104 --------------------------AIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDH 137

Query: 207 DMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVS 243
           D DGTHT+LAGC    RN +HDT +AIRY    LTV 
Sbjct: 138 DRDGTHTELAGCSAPFRNKDHDTFVAIRYSKGRLTVM 174

The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely. Length = 248
>gnl|CDD|217528 pfam03388, Lectin_leg-like, Legume-like lectin family Back     alignment and domain information
>gnl|CDD|173892 cd07308, lectin_leg-like, legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47 Back     alignment and domain information
>gnl|CDD|173890 cd06902, lectin_ERGIC-53_ERGL, ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>gnl|CDD|173886 cd01951, lectin_L-type, legume lectins Back     alignment and domain information
>gnl|CDD|173891 cd06903, lectin_EMP46_EMP47, EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 257
cd06902225 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 tran 100.0
PF03388229 Lectin_leg-like: Legume-like lectin family; InterP 100.0
cd06901248 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembr 100.0
cd06903215 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmem 100.0
KOG3839|consensus351 100.0
KOG3838|consensus 497 100.0
cd07308218 lectin_leg-like legume-like lectins: ERGIC-53, ERG 100.0
cd01951223 lectin_L-type legume lectins. The L-type (legume-t 99.85
cd06899236 lectin_legume_LecRK_Arcelin_ConA legume lectins, l 99.74
PF00139236 Lectin_legB: Legume lectin domain; InterPro: IPR00 99.58
KOG3839|consensus 351 99.48
cd06901248 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembr 99.4
KOG3838|consensus 497 98.73
cd06902225 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 tran 98.44
cd06903215 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmem 98.01
cd07308218 lectin_leg-like legume-like lectins: ERGIC-53, ERG 97.54
cd06900255 lectin_VcfQ VcfQ bacterial pilus biogenesis protei 97.48
PF03388229 Lectin_leg-like: Legume-like lectin family; InterP 95.17
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information 
Probab=100.00  E-value=1.7e-46  Score=331.40  Aligned_cols=181  Identities=35%  Similarity=0.667  Sum_probs=156.7

Q ss_pred             eeeeeeeCCccCC-CCCCCCEEEeeeEEEeCCEEEECCCCCCcEEEEEecCCCCCCcEEEEEEEEEEccCcccCCCeEEE
Q psy9727          29 KRHHSMVKPYLTS-GLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAF  107 (257)
Q Consensus        29 ~~~~Sf~~P~~~~-~~~i~~W~~~G~a~v~~~~IrLTp~~~~~~G~iWs~~p~~~~~w~ie~~Fri~g~~~~~~gdGlAf  107 (257)
                      .-+|||.+||+.. +..+++|++.|+|++.+++|||||+.++++|+||++.|++.++|||||+|||+|.++ .+||||||
T Consensus         4 ~~~~s~~~P~l~~~~~~i~~W~~~G~t~~~~~~IrLTp~~~~~~G~iw~~~~~~~~~w~ie~~Fri~g~~~-~~gdG~a~   82 (225)
T cd06902           4 EYKYSFKGPHLAQKDGTVPFWSHGGDAIASLEQVRLTPSLRSKKGSVWTKNPFSFENWEVEVTFRVTGRGR-IGADGLAI   82 (225)
T ss_pred             eeeecccCcccccCCCCCCceEecccEEecCCEEEECCCCCCCEEEEeeCCCcCCCCEEEEEEEEEecCCC-CCCCEEEE
Confidence            3469999999986 468999999999999999999999999999999999999999999999999999875 67899999


Q ss_pred             EEeecCCCCCccCCCCCCCcEEEEEEEccCCCCCCCCCCCCceEEEEeccceeecCCCCCcccceeeEeeeccCCCCCCC
Q psy9727         108 WYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHN  187 (257)
Q Consensus       108 W~t~~~~~~G~~~G~~~~f~GlaV~~DT~~n~~~~~~~~~p~i~~~~NdGt~~y~~~~DG~~~~l~~C~~~~rn~~~~~~  187 (257)
                      ||++++.+.|++||.+++|+||||+|||++|....   .                                         
T Consensus        83 W~t~~~~~~G~~~G~~~~f~Gl~I~~Dt~~n~~~~---~-----------------------------------------  118 (225)
T cd06902          83 WYTKERGEEGPVFGSSDKWNGVGIFFDSFDNDGKK---N-----------------------------------------  118 (225)
T ss_pred             EEECCCCCCCCccCCCCcccEEEEEEECCCCCCCC---C-----------------------------------------
Confidence            99999988999999999999999999999886421   2                                         


Q ss_pred             ccCcEEEEEEeCCeeEeecCCCCCcceeecccccccCCCCccEEEEEEeCCeEEEEEeC---------CcccCCCccc
Q psy9727         188 HNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVN---------DLLSKGPFIN  256 (257)
Q Consensus       188 ~~~~~i~i~~~~G~~~~d~~~dg~~~~~g~C~~~~rn~~~~~~~~i~Y~~~~l~v~~d~---------~~~~~~~~~~  256 (257)
                        .|+|+++++||+.+|+++.|+..+++++|.++|||+.+|+++||+|.+++|+|++|+         ..||+-.-|.
T Consensus       119 --~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~rn~~~p~~~rI~Y~~~~l~V~~d~~~~~~~~~~~~Cf~~~~v~  194 (225)
T cd06902         119 --NPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVRAKITYYQNVLTVSINNGFTPNKDDYELCTRVENMV  194 (225)
T ss_pred             --CcEEEEEECCCCeeccccCCCcccccceEEEeccCCCCCeEEEEEEECCeEEEEEeCCcCCCCCcccEEEecCCee
Confidence              345555555555566666666667899999999999999999999999999999996         6687655544

ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates Back     alignment and domain information
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain Back     alignment and domain information
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>KOG3839|consensus Back     alignment and domain information
>KOG3838|consensus Back     alignment and domain information
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47 Back     alignment and domain information
>cd01951 lectin_L-type legume lectins Back     alignment and domain information
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported Back     alignment and domain information
>KOG3839|consensus Back     alignment and domain information
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain Back     alignment and domain information
>KOG3838|consensus Back     alignment and domain information
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47 Back     alignment and domain information
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain Back     alignment and domain information
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
2duo_A253 Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN 8e-41
3a4u_A255 Crystal Structure Of Mcfd2 In Complex With Carbohyd 6e-25
3lcp_A247 Crystal Structure Of The Carbohydrate Recognition D 1e-24
1gv9_A260 P58ERGIC-53 Length = 260 3e-24
1r1z_A263 The Crystal Structure Of The Carbohydrate Recogniti 5e-24
>pdb|2DUO|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN, CA2+- Bound Form Length = 253 Back     alignment and structure 
Iteration: 1

 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 121/232 (52%), Gaps = 48/232 (20%)
Query: 28  LKRHHSMVKPYLTSGLS-IPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWE 86
           LKR HS++KPY   G S +P WD  G  + +S YVRLT D +S+ G+IWN  P ++ +WE
Sbjct: 6   LKREHSLIKPYQGVGSSSMPLWDFQGSTILTSQYVRLTPDERSKEGSIWNHQPCFLKDWE 65
Query: 87  VQITLKIHGKGKE-LFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNH 145
           + +  K+HG GK+ L GDG+A WY RDR+  GPVFG+KD F GL + +DTY N +     
Sbjct: 66  MHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPN-DETTER 124
Query: 146 NHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYD 205
             PY+S MVNNGSL YDH  DG  T+L                                 
Sbjct: 125 VFPYISVMVNNGSLSYDHSKDGRWTEL--------------------------------- 151
Query: 206 HDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSKGPFINL 257
                     AGC    RN +HDT +A+RY    LTV  + DL  K  + N 
Sbjct: 152 ----------AGCTADFRNRDHDTFLAVRYSRGRLTV--MTDLEDKNEWKNC 191
>pdb|3A4U|A Chain A, Crystal Structure Of Mcfd2 In Complex With Carbohydrate Recognition Domain Of Ergic-53 Length = 255 Back     alignment and structure
>pdb|3LCP|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain Of Complex With Mcfd2 Length = 247 Back     alignment and structure
>pdb|1GV9|A Chain A, P58ERGIC-53 Length = 260 Back     alignment and structure
>pdb|1R1Z|A Chain A, The Crystal Structure Of The Carbohydrate Recognition Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53 Reveals A Novel Metal Binding Site And Conformational Changes Associated With Calcium Ion Binding Length = 263 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 6e-45
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 6e-42
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 3e-41
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 4e-40
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 2e-39
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 1e-07
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 9e-07
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Length = 253 Back     alignment and structure
 Score =  150 bits (380), Expect = 6e-45
 Identities = 89/222 (40%), Positives = 117/222 (52%), Gaps = 46/222 (20%)

Query: 24  TEDFLKRHHSMVKPYLTSGL-SIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYM 82
           + + LKR HS++KPY   G  S+P WD  G  + +S YVRLT D +S+ G+IWN  P ++
Sbjct: 2   SSEHLKREHSLIKPYQGVGSSSMPLWDFQGSTILTSQYVRLTPDERSKEGSIWNHQPCFL 61

Query: 83  NNWEVQITLKIHGKGKE-LFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNG 141
            +WE+ +  K+HG GK+ L GDG+A WY RDR+  GPVFG+KD F GL + +DTY N   
Sbjct: 62  KDWEMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPN--- 118

Query: 142 EHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGS 201
                                                    +       PY+S MVNNGS
Sbjct: 119 -----------------------------------------DETTERVFPYISVMVNNGS 137

Query: 202 LHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVS 243
           L YDH  DG  T+LAGC    RN +HDT +A+RY    LTV 
Sbjct: 138 LSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVM 179
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Length = 260 Back     alignment and structure
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Length = 222 Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Length = 256 Back     alignment and structure
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Length = 226 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Length = 223 Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Length = 234 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 100.0
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 100.0
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 100.0
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 100.0
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 100.0
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 99.83
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 99.8
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 99.76
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 99.76
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 99.75
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 99.74
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 99.73
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 99.72
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 99.7
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 99.68
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 99.68
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 99.68
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 99.67
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 99.67
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 99.64
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 99.62
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 99.61
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 99.61
3ujo_A281 Legume lectin; carbohydrate-binding, galactose, ad 99.57
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 99.56
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 99.54
2ltn_A181 PEA lectin, alpha chain; 1.70A {Pisum sativum} SCO 99.52
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 99.47
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 99.35
1qmo_A113 Mannose binding lectin, FRIL; crosslink, hematopoi 98.72
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 98.2
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 97.74
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 97.39
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 96.58
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 96.55
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 88.98
1nls_A 237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 84.83
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Back     alignment and structure
Probab=100.00  E-value=6.7e-46  Score=326.38  Aligned_cols=177  Identities=15%  Similarity=0.257  Sum_probs=151.9

Q ss_pred             cccceeeeeeeeCCccCCC--CCCCCEEEeeeEEEeCCEEEECCCCCCcEEEEEecCCCC-CCcEEEEEEEEEEccCccc
Q psy9727          24 TEDFLKRHHSMVKPYLTSG--LSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVY-MNNWEVQITLKIHGKGKEL  100 (257)
Q Consensus        24 ~~~~~~~~~Sf~~P~~~~~--~~i~~W~~~G~a~v~~~~IrLTp~~~~~~G~iWs~~p~~-~~~w~ie~~Fri~g~~~~~  100 (257)
                      .+++++++||+.+|++.++  ..+|+|++.|+|++.+++|||||+ ++++|+||++.|++ .++||+|++|||+|+++ .
T Consensus         3 ~~~~~~~~~Slp~l~~~~~~~~~~~~W~~~G~t~v~~~~IrLTp~-~s~~G~lWs~~p~~~~~~weiev~Fri~G~~~-~   80 (226)
T 2a6v_A            3 DELKWNKGYSLPNLLEVTDQQKELSQWTLGDKVKLEEGRFVLTPG-KNTKGSLWLKPEYSIKDAMTIEWTFRSFGFRG-S   80 (226)
T ss_dssp             ---CBCGGGSCCCTTTCSCHHHHTTTEEEEETCEEETTEEESCCS-TTCEEEEEESSCBCCSSCEEEEEEEEEESCCS-C
T ss_pred             hhhhcccccCCCCcccccCcccccCCcEEcCCeEEeCCEEEECCC-CCceEEEeeCCCCCCCCCeEEEEEEEEecCCC-C
Confidence            3578999999999998765  356999999999999999999999 99999999999999 59999999999999876 4


Q ss_pred             CCCeEEEEEeecCC-CCCccCCC-CCCCcEEEEEEEccCCCCCCCCCCCCceEEEEeccceeecCCCCCcccceeeEeee
Q psy9727         101 FGDGMAFWYVRDRM-EGGPVFGN-KDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDT  178 (257)
Q Consensus       101 ~gdGlAfW~t~~~~-~~G~~~G~-~~~f~GlaV~~DT~~n~~~~~~~~~p~i~~~~NdGt~~y~~~~DG~~~~l~~C~~~  178 (257)
                      +|||||||||+++. ..|++||+ .++|+||||+||||+|.       +|+|++|+|||++.|+                
T Consensus        81 ~gdGlA~Wyt~~~~~~~g~vfGg~~d~f~GlgI~~Dt~~n~-------~p~i~~~~NDGt~~yd----------------  137 (226)
T 2a6v_A           81 TKGGLAFWLKQGNEGDSTELFGGSSKKFNGLMILLRLDDKL-------GESVTAYLNDGTKDLD----------------  137 (226)
T ss_dssp             CSCEEEEEEECSCCCCCCTBTTTBCSSCEEEEEEEEEETTT-------EEEEEEEEEESSSCCC----------------
T ss_pred             CCCEEEEEEECCCCCCCcccccccCCCccEEEEEEECCCCC-------CceEEEEECCCCcccC----------------
Confidence            89999999999988 69999976 56999999999999873       2566666666666554                


Q ss_pred             ccCCCCCCCccCcEEEEEEeCCeeEeecCCCCCcceeecccccccCCCCccEEEEEEe---CCeEEEEEeCCcccCCCcc
Q psy9727         179 YSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYE---DENLTVSGVNDLLSKGPFI  255 (257)
Q Consensus       179 ~rn~~~~~~~~~~~i~i~~~~G~~~~d~~~dg~~~~~g~C~~~~rn~~~~~~~~i~Y~---~~~l~v~~d~~~~~~~~~~  255 (257)
                                                 ++.   .+++++|.++|||+++|+++||+|.   ++.|+|+||+..||+-.-|
T Consensus       138 ---------------------------~~~---~~~~g~C~~~~rn~~~~t~~ri~Y~~~~~~~l~v~id~~~Cf~~~~v  187 (226)
T 2a6v_A          138 ---------------------------IES---SPYFASCLFQYQDSMVPSTLRLTYNPLDNHLLKLQMDNRVCFQTRKV  187 (226)
T ss_dssp             ---------------------------TTT---SCCSEEEECCCSSCSSCEEEEEEEEGGGTSEEEEEETTEEEEEESCC
T ss_pred             ---------------------------CCC---CcccceEeEeccCCCCCEEEEEEEEccCCCEEEEEEcCCeeEEECCe
Confidence                                       433   3589999999999999999999997   7789999999999985433
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Back     alignment and structure
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Back     alignment and structure
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Back     alignment and structure
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Back     alignment and structure
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>3ujo_A Legume lectin; carbohydrate-binding, galactose, adenine binding protein; HET: ADE GAL; 2.00A {Dolichos lablab} PDB: 3ujq_A* 3uk9_A* 3ul2_A* 1fat_A* 1g8w_A* Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Back     alignment and structure
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Back     alignment and structure
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A* Back     alignment and structure
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Back     alignment and structure
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} SCOP: b.29.1.1 PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Back     alignment and structure
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Back     alignment and structure
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Back     alignment and structure
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 257
d1gv9a_228 b.29.1.13 (A:) Carbohydrate-recognition domain of 3e-32
d2a6za1221 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Bake 1e-29
d2a6va1218 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Bake 7e-26
g2ltn.1229 b.29.1.1 (A:,B:) Legume lectin {Garden pea (Pisum 7e-15
d1dbna_239 b.29.1.1 (A:) Legume lectin {Maackia amurensis, le 2e-11
d1n47a_233 b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia vi 2e-11
d1g8wa_233 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 4e-11
d1fnya_237 b.29.1.1 (A:) Legume lectin {Black locust (Robinia 5e-11
d1dhkb_204 b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also ar 2e-10
d1g7ya_253 b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos 2e-10
d1ukga_241 b.29.1.1 (A:) Legume lectin {Bloodwood tree (Ptero 4e-10
d1avba_226 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 2e-09
g1qmo.1230 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolich 5e-09
d1g9fa_251 b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) 1e-07
d1ioaa_228 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 1e-07
d1v6ia_232 b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypog 3e-05
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 228 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Lectin leg-like
domain: Carbohydrate-recognition domain of P58/ERGIC-53
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (290), Expect = 3e-32
 Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 48/223 (21%)

Query: 32  HSMVKPYL-TSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQIT 90
           +S   P+L  S  ++P+W   G A+ S++ +R+   L+S+ G++W        NWEV++T
Sbjct: 9   YSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVT 68

Query: 91  LKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYL 150
            ++ G+G  +  DG+A WY  ++   GPVFG+ D ++G+G+  D++ N            
Sbjct: 69  FRVTGRG-RIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGK--------- 118

Query: 151 SAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDG 210
                                                 N+P +  + NNG ++YDH  DG
Sbjct: 119 -------------------------------------KNNPAIVVVGNNGQINYDHQNDG 141

Query: 211 THTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSKGP 253
               LA C+   RN  +     I Y  + LTV   N       
Sbjct: 142 ATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKN 184
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Length = 239 Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Length = 233 Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 233 Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Length = 237 Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 204 Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Length = 253 Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Length = 241 Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 226 Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Length = 251 Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Length = 228 Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 232 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
d2a6va1218 Emp46p N-terminal domain {Baker's yeast (Saccharom 100.0
d2a6za1221 Emp47p N-terminal domain {Baker's yeast (Saccharom 100.0
d1gv9a_228 Carbohydrate-recognition domain of P58/ERGIC-53 {R 99.98
g2ltn.1229 Legume lectin {Garden pea (Pisum sativum) [TaxId: 99.79
d1fnya_237 Legume lectin {Black locust (Robinia pseudoacacia) 99.77
d1g8wa_233 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 99.76
d1n47a_233 Legume lectin {Hairy vetch (Vicia villosa), isolec 99.71
d1g7ya_253 Legume lectin {Horse gram (Dolichos biflorus), dif 99.71
d1avba_226 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 99.68
d1v6ia_232 Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3 99.67
g1qmo.1230 Legume lectin {Field bean (Dolichos lablab), Fril 99.67
d1dhkb_204 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 99.65
d1g9fa_251 Legume lectin {Soybean (Glycine max) [TaxId: 3847] 99.62
d1dbna_239 Legume lectin {Maackia amurensis, leukoagglutinin 99.61
d1ukga_241 Legume lectin {Bloodwood tree (Pterocarpus angolen 99.6
d1ioaa_228 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 99.56
d1gzca_239 Legume lectin {Cockspur coral tree (Erythrina cris 99.45
d1hqla_236 Legume lectin {Griffonia simplicifolia, lectin I-b 99.44
d1leda_243 Legume lectin {West-central african legume (Griffo 99.41
d2d3sa1237 Legume lectin {Winged bean (Psophocarpus tetragono 99.39
d1qnwa_237 Legume lectin {Furze (Ulex europaeus), UEA-II [Tax 99.35
d1fx5a_240 Legume lectin {Furze (Ulex europaeus), UEA-I [TaxI 99.33
d1f9ka_234 Legume lectin {Winged bean (Psophocarpus tetragono 99.3
d1nlsa_237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 98.2
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 92.88
d2a6za1221 Emp47p N-terminal domain {Baker's yeast (Saccharom 89.25
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Lectin leg-like
domain: Emp46p N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-36  Score=263.32  Aligned_cols=174  Identities=14%  Similarity=0.239  Sum_probs=142.4

Q ss_pred             eeeeeeeeCCccCCC--CCCCCEEEeeeEEEeCCEEEECCCCCCcEEEEEecCCCCC-CcEEEEEEEEEEccCcccCCCe
Q psy9727          28 LKRHHSMVKPYLTSG--LSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYM-NNWEVQITLKIHGKGKELFGDG  104 (257)
Q Consensus        28 ~~~~~Sf~~P~~~~~--~~i~~W~~~G~a~v~~~~IrLTp~~~~~~G~iWs~~p~~~-~~w~ie~~Fri~g~~~~~~gdG  104 (257)
                      +.++|||-+......  ..+++|++.|+|++.+++|||||+ ++++|++|++.|++. ++|+++|+|||+|.+. .+|||
T Consensus         2 ~~~~~slp~~~~~~~~~~~~~~W~~~G~~~~~~~~i~LTp~-~~~~G~~w~~~~i~~~~~f~i~~~F~i~g~~~-~~~dG   79 (218)
T d2a6va1           2 WNKGYSLPNLLEVTDQQKELSQWTLGDKVKLEEGRFVLTPG-KNTKGSLWLKPEYSIKDAMTIEWTFRSFGFRG-STKGG   79 (218)
T ss_dssp             BCGGGSCCCTTTCSCHHHHTTTEEEEETCEEETTEEESCCS-TTCEEEEEESSCBCCSSCEEEEEEEEEESCCS-CCSCE
T ss_pred             ccccccCcchhcccccccccCccEECCCEEEECCEEEECCC-CCCeeEEEeCCcccccccceEEEEEEEeCCCC-CCCCc
Confidence            456799943333333  478999999999999999999998 578999999999987 5699999999998754 57999


Q ss_pred             EEEEEeecCCC--CCccCCCCCCCcEEEEEEEccCCCCCCCCCCCCceEEEEeccceeecCCCCCcccceeeEeeeccCC
Q psy9727         105 MAFWYVRDRME--GGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNH  182 (257)
Q Consensus       105 lAfW~t~~~~~--~G~~~G~~~~f~GlaV~~DT~~n~~~~~~~~~p~i~~~~NdGt~~y~~~~DG~~~~l~~C~~~~rn~  182 (257)
                      |||||++++..  .|+++|.++.|+||||+||||+|.       .|.|++++|||++.|+.                   
T Consensus        80 ~afw~~~~~~~~~~~~~~G~~~~f~GlaV~fDt~~n~-------~~~i~~~~ndGs~~~~~-------------------  133 (218)
T d2a6va1          80 LAFWLKQGNEGDSTELFGGSSKKFNGLMILLRLDDKL-------GESVTAYLNDGTKDLDI-------------------  133 (218)
T ss_dssp             EEEEEECSCCCCCCTBTTTBCSSCEEEEEEEEEETTT-------EEEEEEEEEESSSCCCT-------------------
T ss_pred             EEEEEEcCCcccCCCcccccCCCcceEEEEEECCCCC-------CCeEEEEeCCCCccccc-------------------
Confidence            99999998765  457899999999999999999875       25677777777666543                   


Q ss_pred             CCCCCccCcEEEEEEeCCeeEeecCCCCCcceeecccccccCCCCccEEEEEEeCCe---EEEEEeCCcccCCCccc
Q psy9727         183 NGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDEN---LTVSGVNDLLSKGPFIN  256 (257)
Q Consensus       183 ~~~~~~~~~~i~i~~~~G~~~~d~~~dg~~~~~g~C~~~~rn~~~~~~~~i~Y~~~~---l~v~~d~~~~~~~~~~~  256 (257)
                                              ..|   .+++.|...||+.++|+++||+|.+.+   |+|++|+.+|++-.-|.
T Consensus       134 ------------------------~~d---~~~g~c~~~~~~~~~~~~~~i~Y~~~~~~~l~v~id~~~c~~t~~i~  183 (218)
T d2a6va1         134 ------------------------ESS---PYFASCLFQYQDSMVPSTLRLTYNPLDNHLLKLQMDNRVCFQTRKVK  183 (218)
T ss_dssp             ------------------------TTS---CCSEEEECCCSSCSSCEEEEEEEEGGGTSEEEEEETTEEEEEESCCC
T ss_pred             ------------------------cCC---cccceEEecccCCCCcEEEEEEEECcccceEEEEeCCcEEEEECCee
Confidence                                    332   267899999999999999999998543   99999999999765444
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Back     information, alignment and structure
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Back     information, alignment and structure
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure