Psyllid ID: psy9768

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
MSAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAIASAT
ccHHHHHHHHHHHHHHHccHHHHHHHccccccccccHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHccccccHHHHcHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccEEHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEEEcccEEEEcccccccccccccccc
cccHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccEEHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEEccccEEEEEccccccccccEcccc
MSAVERYLQRVKMVWEgrdsnglsvcfsfknptfkhedfQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCkednwllpvVQTVSLNLRLVSNKVDNKALASsiqdgnsgakprdaLETTTEMLMTCFRIctsdnrtsendskkwgmlpfVNQLFKVYFRISKLHLMKPLIRAIEssqykdksslsqQITYKYYVGrkamfdsdyKTANEYLTFAFQRchksskknkRLILIYLVPVKmllgfmptrelldkydllqLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEgkhidledTHCLLCNLIhdgqlkgyISLAHQKVvlsktdpfpklsaiasat
MSAVERYLQRVKMvwegrdsnglsVCFSFKnptfkhedfqKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALassiqdgnsgakprDALETTTEMLMTCFRICTSdnrtsendskkwgmLPFVNQLFKVYFRISKLHLMKPLIRAIEssqykdksslsqQITYKYYVGRKAMFDSDYKTANEYLTFAfqrchksskknkRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVlsktdpfpklsaiasat
MSAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAIASAT
*****RYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKV*************************TEMLMTCFRICTS*********KKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQY*****LSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLS***************
MSAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDF***VEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKA******************ETTTEMLMTCFRICTS******NDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIR*************SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAIA***
MSAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALAS************DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIES*********SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAIASAT
*SAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALAS********AKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSA*****
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MSAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAIASAT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query406 2.2.26 [Sep-21-2011]
Q5JVF3399 PCI domain-containing pro yes N/A 0.967 0.984 0.506 1e-113
Q5FWP8399 PCI domain-containing pro N/A N/A 0.967 0.984 0.491 1e-112
Q8BFV2399 PCI domain-containing pro yes N/A 0.967 0.984 0.511 1e-111
Q5U3P0399 PCI domain-containing pro yes N/A 0.970 0.987 0.495 1e-110
Q2TBN6408 PCI domain-containing pro yes N/A 0.960 0.955 0.491 1e-108
Q9VTL1395 PCI domain-containing pro yes N/A 0.960 0.987 0.423 1e-94
Q95QU0413 PCI domain-containing pro yes N/A 0.862 0.847 0.411 8e-71
Q60YJ7413 PCI domain-containing pro N/A N/A 0.849 0.835 0.394 5e-69
Q54PX7430 PCI domain-containing pro yes N/A 0.854 0.806 0.359 2e-56
P0CR48403 Protein CSN12 homolog OS= yes N/A 0.825 0.831 0.286 3e-39
>sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2 Back     alignment and function desciption
 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/399 (50%), Positives = 275/399 (68%), Gaps = 6/399 (1%)

Query: 4   VERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAH 63
           + +YLQ+V    + RD    +   SFK+P   +   Q    +   ++ LE P  E+ +AH
Sbjct: 6   INQYLQQVYEAIDSRDGASCAELVSFKHPHVANPRLQMASPEEKCQQVLEPPYDEMFAAH 65

Query: 64  LKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNK 123
           L+C  ++  ++F EAY  Q+ IVQ F++ FQ  KE+NW LPV+  V+L+LR+ +N  D +
Sbjct: 66  LRCTYAVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVALDLRVFANNADQQ 125

Query: 124 ALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVY 183
                ++ G S  K  D LE   E+LM+CFR+C SD R    DSKKWGML  VNQLFK+Y
Sbjct: 126 L----VKKGKS--KVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVNQLFKIY 179

Query: 184 FRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243
           F+I+KLHL KPLIRAI+SS  KD  S +Q++TYKYYVGRKAMFDSD+K A EYL+FAF+ 
Sbjct: 180 FKINKLHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEH 239

Query: 244 CHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMT 303
           CH+SS+KNKR+ILIYL+PVKMLLG MPT ELL KY L+Q  +VT AV  G +  L +A+ 
Sbjct: 240 CHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEALA 299

Query: 304 KHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLED 363
           KH+ FFI+CGI+LILEKLK+ITYRN +     + K   + L  FL AL +++ + +D+++
Sbjct: 300 KHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDE 359

Query: 364 THCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAI 402
             C+L NLI+ G +KGYIS  HQK+V+SK +PFP LS +
Sbjct: 360 VQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPLSTV 398
Required for B-cell survival through the regulation of the expression of cell-cycle checkpoint MAD2L1 protein during B cell differentiation.
Homo sapiens (taxid: 9606)
>sp|Q5FWP8|PCID2_XENLA PCI domain-containing protein 2 OS=Xenopus laevis GN=pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus musculus GN=Pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q5U3P0|PCID2_DANRE PCI domain-containing protein 2 OS=Danio rerio GN=pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos taurus GN=PCID2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VTL1|PCID2_DROME PCI domain-containing protein 2 homolog OS=Drosophila melanogaster GN=PCID2 PE=1 SV=2 Back     alignment and function description
>sp|Q95QU0|PCID2_CAEEL PCI domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=C27F2.10 PE=3 SV=1 Back     alignment and function description
>sp|Q60YJ7|PCID2_CAEBR PCI domain-containing protein 2 homolog OS=Caenorhabditis briggsae GN=CBG18211 PE=3 SV=1 Back     alignment and function description
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=pcid2 PE=3 SV=1 Back     alignment and function description
>sp|P0CR48|CSN12_CRYNJ Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CSN12 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
224042860400 PREDICTED: PCI domain-containing protein 0.967 0.982 0.511 1e-113
326913865399 PREDICTED: LOW QUALITY PROTEIN: PCI doma 0.967 0.984 0.506 1e-112
395855150399 PREDICTED: PCI domain-containing protein 0.967 0.984 0.511 1e-112
410947704399 PREDICTED: PCI domain-containing protein 0.967 0.984 0.506 1e-111
301791098399 PREDICTED: PCI domain-containing protein 0.967 0.984 0.503 1e-111
345788820399 PREDICTED: PCI domain-containing protein 0.967 0.984 0.503 1e-111
189234378395 PREDICTED: similar to PCI domain contain 0.970 0.997 0.491 1e-111
270001938398 hypothetical protein TcasGA2_TC000849 [T 0.970 0.989 0.491 1e-111
296189004399 PREDICTED: PCI domain-containing protein 0.967 0.984 0.506 1e-111
209976986399 PCI domain-containing protein 2 isoform 0.967 0.984 0.506 1e-111
>gi|224042860|ref|XP_002191639.1| PREDICTED: PCI domain-containing protein 2 [Taeniopygia guttata] Back     alignment and taxonomy information
 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/399 (51%), Positives = 281/399 (70%), Gaps = 6/399 (1%)

Query: 4   VERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAH 63
           + +YLQ+V+   E RD    +   SFK+P   +   Q    +   ++ LE P  E+ +AH
Sbjct: 6   INQYLQQVQEAIETRDGTFCAELVSFKHPHVANPRLQLPSPEEKCQQVLESPYDEMFAAH 65

Query: 64  LKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNK 123
           L+C  ++  ++F EAY  Q+ IVQ F++ FQ  KE+NW LP++ +V+L+LR+ +N  D +
Sbjct: 66  LRCTYAVANHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPIMYSVALDLRIFANNADQQ 125

Query: 124 ALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVY 183
            +    + G S  K  D LE   E+LM CFR+C SD R    DSKKWGML  VNQLFK+Y
Sbjct: 126 LM----KKGKS--KVGDMLEKAAELLMGCFRVCASDTRAGIEDSKKWGMLFLVNQLFKIY 179

Query: 184 FRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243
           F+I+KLHL KPLIRAI+SS  KD+ S++Q++TYKYYVGRKAMFDSD+K A EYL+FAF+ 
Sbjct: 180 FKINKLHLCKPLIRAIDSSNLKDEYSMAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEH 239

Query: 244 CHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMT 303
           CH+SS+KNKR+ILIYL+PVKMLLG MPT +LL KYDL+Q  +VT +V  G +  L+DA+T
Sbjct: 240 CHRSSQKNKRMILIYLLPVKMLLGHMPTVQLLKKYDLMQFAEVTKSVSEGNLLLLNDALT 299

Query: 304 KHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLED 363
           KH+TFFI+CGI+LILEKLK+ITYRN +     + K   + L  FL AL +++   +D+++
Sbjct: 300 KHETFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLIALKFMQVDDVDIDE 359

Query: 364 THCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAI 402
             C+L NLI+ G +KGYIS  HQK+V+SK +PFP LS +
Sbjct: 360 VQCILANLIYLGHIKGYISHQHQKLVVSKQNPFPPLSTV 398

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota
>gi|326913865|ref|XP_003203253.1| PREDICTED: LOW QUALITY PROTEIN: PCI domain-containing protein 2-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|395855150|ref|XP_003800033.1| PREDICTED: PCI domain-containing protein 2 isoform 1 [Otolemur garnettii] Back     alignment and taxonomy information
>gi|410947704|ref|XP_003980583.1| PREDICTED: PCI domain-containing protein 2 [Felis catus] Back     alignment and taxonomy information
>gi|301791098|ref|XP_002930545.1| PREDICTED: PCI domain-containing protein 2-like [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|345788820|ref|XP_534192.3| PREDICTED: PCI domain-containing protein 2 [Canis lupus familiaris] Back     alignment and taxonomy information
>gi|189234378|ref|XP_001816040.1| PREDICTED: similar to PCI domain containing 2 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270001938|gb|EEZ98385.1| hypothetical protein TcasGA2_TC000849 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|296189004|ref|XP_002742593.1| PREDICTED: PCI domain-containing protein 2 isoform 1 [Callithrix jacchus] gi|297274841|ref|XP_002800887.1| PREDICTED: PCI domain-containing protein 2-like isoform 2 [Macaca mulatta] gi|332261505|ref|XP_003279812.1| PREDICTED: PCI domain-containing protein 2 isoform 1 [Nomascus leucogenys] gi|380788341|gb|AFE66046.1| PCI domain-containing protein 2 [Macaca mulatta] gi|383419941|gb|AFH33184.1| PCI domain-containing protein 2 [Macaca mulatta] gi|384948182|gb|AFI37696.1| PCI domain-containing protein 2 [Macaca mulatta] Back     alignment and taxonomy information
>gi|209976986|ref|NP_060856.2| PCI domain-containing protein 2 isoform 1 [Homo sapiens] gi|224451001|ref|NP_001120674.1| PCI domain-containing protein 2 isoform 1 [Homo sapiens] gi|224451003|ref|NP_001120675.1| PCI domain-containing protein 2 isoform 1 [Homo sapiens] gi|85681034|sp|Q5JVF3.2|PCID2_HUMAN RecName: Full=PCI domain-containing protein 2; AltName: Full=CSN12-like protein gi|7022282|dbj|BAA91542.1| unnamed protein product [Homo sapiens] gi|10435195|dbj|BAB14521.1| unnamed protein product [Homo sapiens] gi|16741618|gb|AAH16614.1| PCID2 protein [Homo sapiens] gi|343959186|dbj|BAK63448.1| PCI domain-containing protein 2 [Pan troglodytes] gi|410208652|gb|JAA01545.1| PCI domain containing 2 [Pan troglodytes] gi|410247254|gb|JAA11594.1| PCI domain containing 2 [Pan troglodytes] gi|410288318|gb|JAA22759.1| PCI domain containing 2 [Pan troglodytes] gi|410355343|gb|JAA44275.1| PCI domain containing 2 [Pan troglodytes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
MGI|MGI:2443003399 Pcid2 "PCI domain containing 2 0.967 0.984 0.511 6.7e-104
UNIPROTKB|F1NEE3403 PCID2 "Uncharacterized protein 0.967 0.975 0.501 1.4e-103
UNIPROTKB|Q5JVF3399 PCID2 "PCI domain-containing p 0.967 0.984 0.506 2.9e-103
RGD|1307041400 Pcid2 "PCI domain containing 2 0.967 0.982 0.507 1.3e-102
ZFIN|ZDB-GENE-041114-79399 pcid2 "PCI domain containing 2 0.970 0.987 0.495 2e-102
UNIPROTKB|F1MWG9408 PCID2 "PCI domain-containing p 0.967 0.963 0.492 4.9e-101
UNIPROTKB|F1RN42405 PCID2 "Uncharacterized protein 0.967 0.970 0.496 1.2e-99
UNIPROTKB|Q2TBN6408 PCID2 "PCI domain-containing p 0.967 0.963 0.490 1.5e-99
FB|FBgn0036184395 PCID2 "PCI domain-containing p 0.955 0.982 0.426 3.3e-86
WB|WBGene00016171413 C27F2.10 [Caenorhabditis elega 0.972 0.956 0.386 1.3e-68
MGI|MGI:2443003 Pcid2 "PCI domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 204/399 (51%), Positives = 276/399 (69%)

Query:     4 VERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAH 63
             + +YLQ+V    + RD    +   SFK+P   +   Q    +   ++ LE P  E+ +AH
Sbjct:     6 INQYLQQVYEAIDTRDGASCAELVSFKHPHVANPRLQMASPEEKCQQVLEPPYDEMFAAH 65

Query:    64 LKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNK 123
             L+C  ++  ++F EAY  Q+ IVQ F++ FQ  KE+NW LPV+  V+L+LR+ +N  D +
Sbjct:    66 LRCTYAVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVALDLRIFANNADQQ 125

Query:   124 ALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVY 183
                  ++ G S  K  D LE   E+LM+CFR+C SD R    DSKKWGML  VNQLFK+Y
Sbjct:   126 L----VKKGKS--KVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVNQLFKIY 179

Query:   184 FRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243
             F+I+KLHL KPLIRAI+SS  KD  S +Q+ITYKYYVGRKAMFDSD+K A EYL+FAF+ 
Sbjct:   180 FKINKLHLCKPLIRAIDSSNLKDDYSTAQRITYKYYVGRKAMFDSDFKQAEEYLSFAFEH 239

Query:   244 CHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMT 303
             CH+SS+KNKR+ILIYL+PVKMLLG MPT ELL KY L+Q  +VT AV  G +  L++A+ 
Sbjct:   240 CHRSSQKNKRMILIYLLPVKMLLGHMPTIELLRKYHLMQFSEVTKAVSEGNLLLLNEALA 299

Query:   304 KHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLED 363
             KH+TFFI+CGI+LILEKLK+ITYRN +     + K   + L  FL AL ++  + +D+++
Sbjct:   300 KHETFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMHVEDVDIDE 359

Query:   364 THCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAI 402
               C+L NLI+ G +KGYIS  HQK+V+SK +PFP LS +
Sbjct:   360 VQCILANLIYMGHIKGYISHQHQKLVVSKQNPFPPLSTV 398
GO:0005575 "cellular_component" evidence=ND
GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP
GO:0043488 "regulation of mRNA stability" evidence=ISO
GO:0045579 "positive regulation of B cell differentiation" evidence=IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IMP
GO:0048536 "spleen development" evidence=IMP
GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=ISO;IMP
GO:2000117 "negative regulation of cysteine-type endopeptidase activity" evidence=ISO
UNIPROTKB|F1NEE3 PCID2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JVF3 PCID2 "PCI domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307041 Pcid2 "PCI domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-79 pcid2 "PCI domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWG9 PCID2 "PCI domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN42 PCID2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBN6 PCID2 "PCI domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0036184 PCID2 "PCI domain-containing protein 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00016171 C27F2.10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4WJX0CSN12_ASPFUNo assigned EC number0.30740.76100.6791yesN/A
O13873CSN12_SCHPONo assigned EC number0.30600.78570.7541yesN/A
Q54PX7PCID2_DICDINo assigned EC number0.35930.85460.8069yesN/A
Q9VTL1PCID2_DROMENo assigned EC number0.42390.96050.9873yesN/A
P0CR48CSN12_CRYNJNo assigned EC number0.28610.82510.8312yesN/A
Q5JVF3PCID2_HUMANNo assigned EC number0.50620.96790.9849yesN/A
Q6BGR7CSN12_DEBHANo assigned EC number0.23800.96050.8904yesN/A
Q4IMN9CSN12_GIBZENo assigned EC number0.26380.92360.8241yesN/A
Q5U3P0PCID2_DANRENo assigned EC number0.4950.97040.9874yesN/A
Q95QU0PCID2_CAEELNo assigned EC number0.41110.86200.8474yesN/A
Q2TBN6PCID2_BOVINNo assigned EC number0.49140.96050.9558yesN/A
Q8BFV2PCID2_MOUSENo assigned EC number0.51120.96790.9849yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
COG5600413 COG5600, COG5600, Transcription-associated recombi 2e-50
pfam01399100 pfam01399, PCI, PCI domain 2e-07
>gnl|CDD|227887 COG5600, COG5600, Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  174 bits (444), Expect = 2e-50
 Identities = 86/371 (23%), Positives = 156/371 (42%), Gaps = 16/371 (4%)

Query: 41  KNVEDYVIRRYLEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCK--- 97
                  I+R         V+  L+   ++   + +      S ++Q   K         
Sbjct: 44  DAKLKETIQR-PFGRNDTAVTLVLQKFLNL-GRDKDPWSKRSSELLQELYKNLTAELSYS 101

Query: 98  EDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICT 157
               L  +V+     L      +                  +D L   + +L   F    
Sbjct: 102 SAPHLEVLVKNAVRMLGREIWNLTVVKKQLYGLLELKSELNQDNLSKISRLLTRMFNSIL 161

Query: 158 SDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKS--SLSQQIT 215
           +D   + N SKK G+    N LF++Y R+ +  L +  ++A +     D S    SQ + 
Sbjct: 162 NDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVV 221

Query: 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLG-FMPTREL 274
           + YY+G   + + ++  A  +L  AF +C     +N++ IL Y +P  +L+  F PT++L
Sbjct: 222 FHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDL 281

Query: 275 LDKYDLLQLWDVTV-AVKGGQINQLSDAMTKHQTFFIKCGIYL-ILEKLKMITYRNF--- 329
           L+++    ++   V AV+ G I     A+++++  F K G+YL +L    ++ +RN    
Sbjct: 282 LERFKRCSVYSPLVKAVRSGNIEDFDLALSRNERKFAKRGLYLTLLAHYPLVCFRNLFRK 341

Query: 330 -YNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKV 388
            + +H   ++  +  L   LQ            ++  C+L  LI  G L+GYIS + + V
Sbjct: 342 IWRLHGKQSRLPLSILLIVLQ--LSAIDNFHSFKEVECILVTLIGLGLLRGYISHSRRTV 399

Query: 389 VLSKTDPFPKL 399
           V SK DPFP  
Sbjct: 400 VFSKKDPFPVS 410

Length = 413
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 406
KOG2688|consensus394 100.0
COG5600413 Transcription-associated recombination protein [DN 100.0
KOG2581|consensus493 99.97
KOG1464|consensus440 99.77
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.59
KOG1463|consensus411 98.96
KOG2908|consensus380 98.66
COG5159421 RPN6 26S proteasome regulatory complex component [ 98.36
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 98.08
smart0075388 PAM PCI/PINT associated module. 98.08
KOG2582|consensus422 97.81
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 97.35
KOG2753|consensus378 96.85
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 95.7
KOG1497|consensus399 95.24
KOG0687|consensus393 95.2
COG5187412 RPN7 26S proteasome regulatory complex component, 95.13
KOG2758|consensus432 94.95
KOG0686|consensus466 94.81
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 94.69
PF1337173 TPR_9: Tetratricopeptide repeat 94.41
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 93.9
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 92.47
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 90.71
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 90.31
KOG1498|consensus439 89.18
cd00189100 TPR Tetratricopeptide repeat domain; typically con 89.16
TIGR02552135 LcrH_SycD type III secretion low calcium response 88.76
cd00189100 TPR Tetratricopeptide repeat domain; typically con 88.14
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 87.9
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 87.84
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 87.7
PRK15359144 type III secretion system chaperone protein SscB; 87.64
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 87.41
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 85.72
PF03399204 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I 82.99
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 82.5
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 81.3
KOG1076|consensus843 80.96
>KOG2688|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-79  Score=605.60  Aligned_cols=390  Identities=36%  Similarity=0.593  Sum_probs=368.9

Q ss_pred             HHHHHHHHHHHhcCChHHHhchhCCcCCCCccccccccchHHHHHhhccCCHHHHHHHHHHHHHHhh-cCCHHHHHHHHH
Q psy9768           5 ERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQ-ANNFNEAYLSQS   83 (406)
Q Consensus         5 ~~yl~~v~~a~~~~dg~~l~~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evv~~~lk~~~~i~-~~~~~~a~~~~~   83 (406)
                      ++|++++..++...||+.++...+..+++.++++..++.++..+++++..||++++..|+++...+. +-+...||..+.
T Consensus         1 ~~y~~~~~~~~~~~d~~~~a~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~sa~~~~~   80 (394)
T KOG2688|consen    1 NDYFSQLLSAVARLDGELLAVQLSRRDGHVQTSRTVFDAEEERLQQFIGKPFDTIVGLHLRVLLRVAYPCDAASAFSQQK   80 (394)
T ss_pred             CchHHHHHHHHHhccHHHHHHhcCCCcchhhcchhhcccHHHHHHhccCCCcchhHhHHHHHHhhhccCcchhhhhhhHH
Confidence            4799999999999999999999999999999999888999999999999999999999999988777 678889999988


Q ss_pred             HHHH-HHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHHHHHHHHHHHhhhhcCCCC
Q psy9768          84 TIVQ-GFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRT  162 (406)
Q Consensus        84 ~~~~-~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~~a~~i~~~F~~c~~D~~~  162 (406)
                       +.+ ...++++...+++|++|+++.+|.+++.+|..++.+...      .+ ..++..+|.+|++++++|+.|++|+++
T Consensus        81 -~~~~~~l~~~~s~~~~~w~~~~l~rv~~~l~~la~~~~~~~~~------~~-s~~~~~le~~s~~i~~~f~~cl~d~~~  152 (394)
T KOG2688|consen   81 -LFGFLSLRAFSSGNDENWILPNLYRVCKDLRYLAINADCALLS------FS-SLPNQLLEAASRTISRLFSSCLSDRRA  152 (394)
T ss_pred             -HHhhhhHHHHhcccccchHHHHHHHHHHHHHHHhhhhHHhhcC------cc-cCchHHHHHHHHHHHHHHHHHhCcccc
Confidence             444 667788888899999999999999999999999988742      11 356789999999999999999999999


Q ss_pred             CCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC-CCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHH
Q psy9768         163 SENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS-QYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAF  241 (406)
Q Consensus       163 ~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~-~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~  241 (406)
                      +.+++||||+++++|++|+|||++++++||+++++++++. +..+.++++|+|+|+||+|+++|++.||.+|+.+|.+||
T Consensus       153 ~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af  232 (394)
T KOG2688|consen  153 DLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAF  232 (394)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 667899999999999999999999999999999999999


Q ss_pred             HHhcccchHHHHHHHHHHHHHHHhcCCCCChhhhchhchhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHHHHHhh
Q psy9768         242 QRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKL  321 (406)
Q Consensus       242 ~~c~~~~~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl~lerl  321 (406)
                      ++||.....|+++||+|+||+.|++|++|+.+++++|.+..|.|+++|||.||+..|+.++++||.+|+++|+|++++++
T Consensus       233 ~~cp~~~~~n~~~iliylip~~~llg~~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l  312 (394)
T KOG2688|consen  233 RLCPDLLLKNKRLILIYLIPTGLLLGRIPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKL  312 (394)
T ss_pred             HhCcHHHHhhhhhHHHHHhHHHHHhccCcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC-CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCCCCCcc
Q psy9768         322 KMITYRNFYNIHKDIN-KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLS  400 (406)
Q Consensus       322 r~lv~rnL~kkv~~~~-~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~pFP~~~  400 (406)
                      +.+||||||||||.++ +++++|++.|..|+++++.+++++||+||+|||||++|+|||||||+++++|+||++|||.++
T Consensus       313 ~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~pfp~~v  392 (394)
T KOG2688|consen  313 PLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDPFPHLV  392 (394)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCCCCCCC
Confidence            9999999999999998 889999999999999999888999999999999999999999999999999999999999987


Q ss_pred             cc
Q psy9768         401 AI  402 (406)
Q Consensus       401 ~~  402 (406)
                      .+
T Consensus       393 ~~  394 (394)
T KOG2688|consen  393 LV  394 (394)
T ss_pred             CC
Confidence            53

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2581|consensus Back     alignment and domain information
>KOG1464|consensus Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>KOG1463|consensus Back     alignment and domain information
>KOG2908|consensus Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>KOG2582|consensus Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>KOG2753|consensus Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG1497|consensus Back     alignment and domain information
>KOG0687|consensus Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2758|consensus Back     alignment and domain information
>KOG0686|consensus Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG1498|consensus Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>KOG1076|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
3t5x_A203 Pcid2:dss1 Structure Length = 203 5e-63
3t5v_B455 Sac3:thp1:sem1 Complex Length = 455 6e-09
>pdb|3T5X|A Chain A, Pcid2:dss1 Structure Length = 203 Back     alignment and structure 
Iteration: 1

 Score =  238 bits (606), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 151/202 (74%)
Query: 201 SSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLV 260
            S  KD  S +Q++TYKYYVGRKAMFDSD+K A EYL+FAF+ CH+SS+KNKR+ILIYL+
Sbjct: 1   GSHMKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLL 60
Query: 261 PVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEK 320
           PVKMLLG MPT ELL KY L+Q  +VT AV  G +  L +A+ KH+ FFI+CGI+LILEK
Sbjct: 61  PVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEK 120
Query: 321 LKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGY 380
           LK+ITYRN +     + K   + L  FL AL +++ + +D+++  C+L NLI+ G +KGY
Sbjct: 121 LKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGY 180
Query: 381 ISLAHQKVVLSKTDPFPKLSAI 402
           IS  HQK+V+SK +PFP LS +
Sbjct: 181 ISHQHQKLVVSKQNPFPPLSTV 202
>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex Length = 455 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 4e-81
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 1e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 455 Back     alignment and structure
 Score =  255 bits (653), Expect = 4e-81
 Identities = 73/446 (16%), Positives = 149/446 (33%), Gaps = 58/446 (13%)

Query: 1   MSAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKH-EDFQKNVEDYVIRRYLEHPIF-- 57
           M    + L  +       + + L++  S         +      +D  +  ++E      
Sbjct: 1   MDMANQLLDELA----HGNFSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMP 56

Query: 58  ------ELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMF--QQCKEDNWLLPVVQTV 109
                  + ++ L   + +   +   +        Q  I             L+PV    
Sbjct: 57  NDTRFKIMCTSFLNYARDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRE 116

Query: 110 SLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSD---NRTSEND 166
           +  +  ++ K+D+  L           +    L   + +L   F           ++   
Sbjct: 117 TEFIINLAGKLDSFHLQL-------HTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIP 169

Query: 167 SKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQY---KDKSSLSQQITYKYYVGRK 223
            K+  +L  VN+L  +YFRI    L   + +  +        ++  L QQI Y+Y +GR 
Sbjct: 170 GKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRY 229

Query: 224 AMFDSDYKTANEYLTFAFQR------CHKSSKKNKRLILIYLVPVKMLLGFMPTRELL-- 275
            + +S    A      AFQ        +++  +N   IL Y++P  ++LG M     L  
Sbjct: 230 YLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRP 289

Query: 276 --DKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYL-ILEKLKMITYRNF--- 329
              +  +     +   V+ G I  +S  + +++       + + +LEKL M+TYRN    
Sbjct: 290 FLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKT 349

Query: 330 -YNIHKDINKNSVVELQQFLQALHY---------------VEGKHIDLEDTHCLLCNLIH 373
                      + +      + L                 +       ++   +L  LI+
Sbjct: 350 VIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLIN 409

Query: 374 DGQLKGYISLAHQKVVLSKTDPFPKL 399
            G L+       Q  V+ KT    ++
Sbjct: 410 LGLLRANCFPQLQLCVVKKTTMIQEI 435
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Length = 203 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 100.0
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 100.0
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 99.78
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 99.63
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 99.54
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.42
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 99.38
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 98.56
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 98.11
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 97.72
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 94.63
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 92.42
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 92.41
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 92.38
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 92.33
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 92.14
3q15_A378 PSP28, response regulator aspartate phosphatase H; 91.63
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 91.44
3u3w_A293 Transcriptional activator PLCR protein; ternary co 91.35
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 91.11
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 90.9
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 90.8
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 90.25
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 89.92
3q49_B137 STIP1 homology and U box-containing protein 1; E3 89.92
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 89.86
3k9i_A117 BH0479 protein; putative protein binding protein, 89.86
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 89.72
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 89.7
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 89.61
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 89.44
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 89.36
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 89.26
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 89.01
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 88.84
2l6j_A111 TPR repeat-containing protein associated with HSP; 88.67
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 88.67
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 88.58
2kat_A115 Uncharacterized protein; NESG, structure, structur 88.57
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 88.55
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 88.46
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 88.44
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 88.43
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 88.11
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 87.85
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 87.73
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 87.49
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 87.49
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 87.39
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 87.36
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 87.32
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 87.03
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 86.91
3q15_A378 PSP28, response regulator aspartate phosphatase H; 86.7
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 86.43
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 86.37
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 86.18
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 86.17
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 86.1
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 85.8
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 85.73
4i17_A228 Hypothetical protein; TPR repeats protein, structu 85.68
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 85.65
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 85.58
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 85.49
3q49_B137 STIP1 homology and U box-containing protein 1; E3 85.28
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 85.27
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 85.17
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 84.94
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 84.81
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 84.79
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 84.55
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 84.54
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 84.44
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 83.88
3u4t_A272 TPR repeat-containing protein; structural genomics 83.58
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 83.46
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 83.36
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 83.04
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 82.9
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 82.88
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 82.6
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 82.47
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 82.43
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 82.37
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 82.13
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 82.09
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 82.09
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 81.69
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 81.59
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 81.35
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 81.21
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 81.01
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 80.93
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 80.86
4eqf_A365 PEX5-related protein; accessory protein, tetratric 80.66
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 80.4
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 80.35
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 80.2
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 80.16
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=2.3e-84  Score=663.86  Aligned_cols=387  Identities=19%  Similarity=0.230  Sum_probs=338.6

Q ss_pred             ChhHHHHHHHHHHHHhcCChHHHhchhCCcCCCCcc--cccc-----ccc--hHHHHHhhcc----CCHHHHHHHHHHHH
Q psy9768           1 MSAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKH--EDFQ-----KNV--EDYVIRRYLE----HPIFELVSAHLKCV   67 (406)
Q Consensus         1 M~~l~~yl~~v~~a~~~~dg~~l~~lls~~~~~~~~--~~~~-----~~~--~~~~~~~~~~----~~~~evv~~~lk~~   67 (406)
                      |+.+++|+++|.+      |.  ..+|+++++..+.  ..++     .++  -+..++...+    ++|.++|.+|++++
T Consensus         1 m~~~~~fl~~i~~------~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~   72 (455)
T 3t5v_B            1 MDMANQLLDELAH------GN--FSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMPNDTRFKIMCTSFLNYA   72 (455)
T ss_dssp             -CCHHHHHHHHHH------TC--CSSCCSCSSSSHHHHHHHHHHHHHSCHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHh------cc--cceEEeCCCCCchHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence            8999999999998      33  8999998764221  1111     111  1233444432    47889999999999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCccc---hHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHH
Q psy9768          68 QSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWL---LPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALET  144 (406)
Q Consensus        68 ~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~---lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~  144 (406)
                      +++++||+.++|+.+.+++++++++|.+. ..+|+   +|+++..++.|+.+|.++|++...      .+ ..+.+.+|+
T Consensus        73 rdv~~~sl~~s~dll~~~~~~l~~a~~~~-~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~------~~-~~~~~~le~  144 (455)
T 3t5v_B           73 RDVDPWSAWSSSDLIFEFYQCLINCLIND-NAPHIEMLIPVATRETEFIINLAGKLDSFHLQ------LH-TRSHQFLSH  144 (455)
T ss_dssp             HHCCTTCSSTTHHHHHHHHHHHHTTSSST-TCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHH------HT-CCTTHHHHH
T ss_pred             HhCCcchHHHHHHHHHHHHHHHHHHHcCC-CCchHHHhHHHHHHHHHHHHHHHHHhhhhHhh------hc-ccchhHHHH
Confidence            99999999999999999999999999987 57998   888888889999999999999854      12 234589999


Q ss_pred             HHHHHHHHHhhhhcCCCCCCccc---chhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCC---CCCCCCcchhhHHhh
Q psy9768         145 TTEMLMTCFRICTSDNRTSENDS---KKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQ---YKDKSSLSQQITYKY  218 (406)
Q Consensus       145 ~a~~i~~~F~~c~~D~~~~~~~s---Kk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~---~~~~~~~~~~vty~Y  218 (406)
                      ||++|+++|++|++||+++.++|   ||||+++++|+|||+|||+|+++||++++++++++.   ..+.||++|+|||+|
T Consensus       145 ~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~Y  224 (455)
T 3t5v_B          145 ISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRY  224 (455)
T ss_dssp             HHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeH
Confidence            99999999999999999887777   999999999999999999999999999999999873   467899999999999


Q ss_pred             hhhhhhhhhccHHHHHHHHHHHHHH-hccc-----chHHHHHHHHHHHHHHHhcCCCCChhhhch---hchhh-hHHHHH
Q psy9768         219 YVGRKAMFDSDYKTANEYLTFAFQR-CHKS-----SKKNKRLILIYLVPVKMLLGFMPTRELLDK---YDLLQ-LWDVTV  288 (406)
Q Consensus       219 Y~Gr~~~~~~~~~~A~~~L~~A~~~-c~~~-----~~~nk~~IL~yLIp~~lllG~~P~~~ll~~---~~l~~-y~~l~~  288 (406)
                      |+||+++++++|.+|+++|++||++ ||.+     +.+||++||+||||++|++|++|++.++++   +.+.+ |.+|++
T Consensus       225 YlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~  304 (455)
T 3t5v_B          225 LLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYK  304 (455)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHH
Confidence            9999999999999999999999999 9987     479999999999999999999999999998   45666 999999


Q ss_pred             HHHhCCHHHHHHHHHHhHHHHHHhcH-HHHHHhhHHHHHHHHHHHH---HhcC-CCccccHHHHHHHhccccCC------
Q psy9768         289 AVKGGQINQLSDAMTKHQTFFIKCGI-YLILEKLKMITYRNFYNIH---KDIN-KNSVVELQQFLQALHYVEGK------  357 (406)
Q Consensus       289 aik~Gnl~~f~~~l~~~~~~f~~~gl-yl~lerlr~lv~rnL~kkv---~~~~-~~~~i~l~~~~~al~~~~~~------  357 (406)
                      |||+||+.+|++++++|+.+|+++|+ |++++|+|.+|||||+|||   |.+. ++++||+++|+.|+++++.+      
T Consensus       305 AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~  384 (455)
T 3t5v_B          305 HVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPG  384 (455)
T ss_dssp             HHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTT
T ss_pred             HHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccc
Confidence            99999999999999999999999999 8999999999999999999   7774 45999999999999986432      


Q ss_pred             ---------CCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCC----CCCCCccccc
Q psy9768         358 ---------HIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKT----DPFPKLSAIA  403 (406)
Q Consensus       358 ---------~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~----~pFP~~~~~~  403 (406)
                               ++|+||||||+||||++|+|||||+|+++++|+||+    +|||+++++.
T Consensus       385 ~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~~~~pFP~l~~~~  443 (455)
T 3t5v_B          385 AQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTMIQEIVPPVNERI  443 (455)
T ss_dssp             CCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSCGGGTSCCHHHHH
T ss_pred             cccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCCCCCCCCChHHHH
Confidence                     268999999999999999999999999999999999    9999998763
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 97.78
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 93.45
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 93.15
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 92.38
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 90.52
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 89.7
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 88.91
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 87.64
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 87.52
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 87.14
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 87.1
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 86.17
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 85.39
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 83.59
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 83.29
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 81.74
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 81.69
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 81.68
d1w3ba_ 388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 81.36
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 80.72
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=4.2e-05  Score=58.06  Aligned_cols=50  Identities=14%  Similarity=0.288  Sum_probs=45.2

Q ss_pred             CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCC
Q psy9768         338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKT  393 (406)
Q Consensus       338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~  393 (406)
                      .+++|+++.+...|.      ++.+|+|.++++||.+|.|+|+|++.+++|.+.+.
T Consensus        27 ~Y~~Isl~~la~~l~------l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~   76 (84)
T d1ufma_          27 LYNNITFEELGALLE------IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR   76 (84)
T ss_dssp             SCSEEEHHHHHHHTT------SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred             hhceeeHHHHHHHHC------CCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCC
Confidence            358999999999984      57899999999999999999999999999988664
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure