Psyllid ID: psy980

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------
Protein Sequence
MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSHLHFSIEFYPDHLLKRRNNNNRFCAISISSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGLAVGWWFDTMSSY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccEEccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccEEEEEEEEEccHHHHHHHHcEEEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEEEEEccEEEEEcccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEcccEEEEEEccccccEEEEEcccccHcccccccccEEcccHEHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHEcccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccEEEEEEEcccccccccHHHHHcccccccccccccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
MINLLLTGYFFLLGVLALCYllspvisplvpaaipnipfhlkfdrgatneekkdgSEALLVIFDykfsshdiVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFeapiklvfpqdllehgvsannfamlglgdivVPGIFIALLLRFDlslnrrsntyFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLmdnryptagqrshlhfsiefypdhllkrrnnnnrFCAISISSlnrrsntyFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYllspvisplvpaaipnipfhlkfdrgatneekkdgsfdrgatneekkdgSEALLVIFDykfsshdiVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGLAVGWWFDTMSSY
Flexible Loop (DISEMBL)
MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSHLHFSIEFYPDHLLKRRNNNNRFCAISisslnrrsnTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLkfdrgatneekkdgsfdrgatneekkdgsEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGLAVGWWFDTMSSY
Low Complexity Region (SEG)
MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSHLHFSIEFYPDHLLKRRNNNNRFCAISISSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGLAVGWWFDTMSSY
Disordered region (IsUnstruct)
*INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRG**********EALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSHLHFSIEFYPDHLLKRRNNNNRFCAISISSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFD***************************ALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGLAVGWWFDT****
Disordered Region (DISOPRED)
MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSHLHF*******************************NTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINV*********************
Disordered Region (DISEMBL)
MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSHLHFSIEFYPDHLLKRRNNNNRFCAISISSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGLAVGWWFDTMSSY
Disordered Region (DISPRO)
MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSHLHFSIEFYPDHLLKRRNNNNRFCAISISSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGLAVGWWFDTM***
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSHLHFSIEFYPDHLLKRRNNNNRFCAISISSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKYVHESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGLAVGWWFDTMSSY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	587	2.2.26 [Sep-21-2011]
Q8TCT9	377	Minor histocompatibility	no	N/A	0.396	0.618	0.651	1e-87
Q9D8V0	378	Minor histocompatibility	yes	N/A	0.396	0.616	0.659	3e-87
B9FJ61	343	Signal peptide peptidase	yes	N/A	0.369	0.632	0.481	3e-51
Q6ZGL9	343	Signal peptide peptidase	no	N/A	0.362	0.620	0.477	6e-51
O81062	344	Signal peptide peptidase	yes	N/A	0.369	0.630	0.464	7e-50
P49049	468	Intramembrane protease 2	yes	N/A	0.405	0.508	0.442	9e-50
Q9UTA3	295	Probable intramembrane pr	yes	N/A	0.260	0.518	0.466	7e-34
Q93Z32	372	Signal peptide peptidase-	no	N/A	0.277	0.438	0.352	5e-24
Q7G7C7	371	Signal peptide peptidase-	no	N/A	0.301	0.477	0.330	2e-23
P34248	587	Probable intramembrane pr	yes	N/A	0.281	0.281	0.365	1e-22

>sp|Q8TCT9|HM13_HUMAN Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1

 Score =  324 bits (831), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/241 (65%), Positives = 195/241 (80%), Gaps = 8/241 (3%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           INLLL+ YFF+LG+LAL + +SP ++   PA+ PN  + L F +G + E K++       
Sbjct: 101 INLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQG-SGENKEE------- 152

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           I +Y+F + D+VC  + S+ G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct: 153 IINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 212

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLFIYD+FWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ ANNFAMLGLGD+V+PGIF
Sbjct: 213 GGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIF 272

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           IALLLRFD+SL + ++TYF T+F AY  GL  TIF+MH+FKHAQPALLYLVPAC+G P+L
Sbjct: 273 IALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVL 332

Query: 242 I 242
           +
Sbjct: 333 V 333

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. May play a role in graft rejection (By similarity). May be necessary for the removal of the signal peptide that remains attached to the hepatitis C virus core protein after the initial proteolytic processing of the polyprotein. Involved in the intramembrane cleavage of the integral membrane protein PSEN1.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|Q9D8V0|HM13_MOUSE Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1

 Score =  323 bits (827), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 159/241 (65%), Positives = 194/241 (80%), Gaps = 8/241 (3%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           INLLL+ YFF+LG+LAL + +SP ++   PA  PN  + L F +G + E K++       
Sbjct: 101 INLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQG-SGENKEE------- 152

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           I +Y+F + D+VC  + SV G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct: 153 IINYEFDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 212

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ A+NFAMLGLGDIV+PGIF
Sbjct: 213 GGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIF 272

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           IALLLRFD+SL + ++TYF T+F AY  GL  TIF+MH+FKHAQPALLYLVPAC+G P+L
Sbjct: 273 IALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVL 332

Query: 242 I 242
           +
Sbjct: 333 V 333

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. Involved in the intramembrane cleavage of the integral membrane protein PSEN1 (By similarity). May play a role in graft rejection.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|B9FJ61|SIP2_ORYSJ Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/237 (48%), Positives = 146/237 (61%), Gaps = 20/237 (8%)

Query: 1   MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALL 60
           ++N +LT YFF+LG+ ALC  L P I   +P                 N+        L 
Sbjct: 85  LVNTVLTAYFFILGIAALCATLLPSIKRFLPKE--------------WNDNAIVWRAPLF 130

Query: 61  VIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVIL 120
                +F+   +V  I    F  WY  KKHW+ANN+ G++F + GIE+L L +   G IL
Sbjct: 131 HSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLSLGSFKTGAIL 190

Query: 121 LCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGI 180
           L GLF YDIFWVF T VMV+VAKSF+APIKL+FP      G +A  F+MLGLGDIV+PGI
Sbjct: 191 LSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPT-----GDAARPFSMLGLGDIVIPGI 245

Query: 181 FIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLG 237
           F+AL LRFD+S   + N YFN+AFL Y +GL  TI VM+ F+ AQPALLY+VP  +G
Sbjct: 246 FVALALRFDVSRGIK-NRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVIG 301

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q6ZGL9|SIP1_ORYSJ Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1

 Score =  202 bits (514), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 148/241 (61%), Gaps = 28/241 (11%)

Query: 1   MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALL 60
           ++N +LT YFF+LG+ ALC  L P I   +P                  +E  D +    
Sbjct: 85  LVNAVLTAYFFILGIAALCATLLPSIKRFLP------------------KEWNDNAIVWC 126

Query: 61  VIF----DYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMI 116
             F      +F+   +V  I    F  WY  KKHW+ANN+ G++F + GIE+L L +   
Sbjct: 127 APFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLSLGSFKT 186

Query: 117 GVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIV 176
           G ILL GLF YDIFWVF T VMV+VAKSF+APIKL+FP      G +A  F+MLGLGDIV
Sbjct: 187 GAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPT-----GDAARPFSMLGLGDIV 241

Query: 177 VPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACL 236
           +PGIF+AL LRFD+S   + N YFN+AFL Y +GL  TI VM+ F+ AQPALLY+VP  +
Sbjct: 242 IPGIFVALALRFDVSRGIK-NRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query: 237 G 237
           G
Sbjct: 301 G 301

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|O81062|SIP_ARATH Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1

 Score =  199 bits (505), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 150/237 (63%), Gaps = 20/237 (8%)

Query: 1   MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALL 60
           ++N +LT YFF+LG++AL   L P I   +P    +     +F    +            
Sbjct: 85  LVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWNDNLIVWRFPYFKS------------ 132

Query: 61  VIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVIL 120
              + +F+   +V  I  + F +WY  KKHW+ANN+ GL+F + GIE+L L +   G IL
Sbjct: 133 --LEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLSLGSFKTGAIL 190

Query: 121 LCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGI 180
           L GLF YDIFWVF T VMV+VAKSF+APIKL+FP      G +   ++MLGLGDIV+PGI
Sbjct: 191 LAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPT-----GDALRPYSMLGLGDIVIPGI 245

Query: 181 FIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLG 237
           F+AL LRFD+S  RR   YF +AF+ Y +G++ TI VM+ F+ AQPALLY+VPA +G
Sbjct: 246 FVALALRFDVS-RRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQPALLYIVPAVIG 301

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm (By similarity). Plays a critical role in the development and function of the reproductive tissues, especially in pollen development.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P49049|IMP2_CAEEL Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1

 Score =  198 bits (504), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 116/262 (44%), Positives = 155/262 (59%), Gaps = 24/262 (9%)

Query: 5   LLTGYFFLLGVLALCYLLSPVIS------PLVPAAIP-NIPFHLKFDRGATNEEKKDGSE 57
           LLT      GV A   LL P ++      PLVP+ +  N P+     +G    E+ D  +
Sbjct: 172 LLTFLICFEGVNAFASLLKPFVTAFLKKMPLVPSFLRFNAPYLFSLKKGNKEMEEGDIED 231

Query: 58  A----LLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNN 113
           A       +F   F  +DI+  ++CS     +L+K+HWI NN+ G++F++ GIE LHL +
Sbjct: 232 AKKKETEYLFKIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLAS 291

Query: 114 VMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGV-SANNFAMLGL 172
              G +LL GLF YDIFWVFGT+VM +VAK  +API L FPQD+  +G+  A+  +MLGL
Sbjct: 292 FKAGSLLLVGLFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEASKHSMLGL 351

Query: 173 GDIVVPGIFIALLLRFDLSLNR------------RSNTYFNTAFLAYFLGLMATIFVMHV 220
           GDIV+PGIFIALL RFD  + +            +   YF    +AY  GL  T+ VMH 
Sbjct: 352 GDIVIPGIFIALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHH 411

Query: 221 FKHAQPALLYLVPACLGLPLLI 242
           FK AQPALLYLVP CL +PLL+
Sbjct: 412 FKAAQPALLYLVPCCLFVPLLL 433

May act as intramembrane protease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9UTA3|YL8H_SCHPO Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.17 PE=3 SV=1

 Score =  145 bits (367), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 103/165 (62%), Gaps = 12/165 (7%)

Query: 84  WYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAK 143
           +Y   KHW+A+N+   A A N I ++ +++   G +LL  LF YDI++VFGT VMVTVA 
Sbjct: 105 FYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLLGALFFYDIYFVFGTEVMVTVAT 164

Query: 144 SFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDL-------SLNRRS 196
             + P K V PQ       +    +MLGLGDIV+PG+ +AL+ RFDL       S  ++ 
Sbjct: 165 GIDIPAKYVLPQ-----FKNPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKH 219

Query: 197 NTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           +TYF   F+AY LGL  T F ++ FK AQPALLYL PAC+  PLL
Sbjct: 220 STYFRNTFIAYGLGLGVTNFALYYFKAAQPALLYLSPACIVAPLL 264

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q93Z32|SIPL1_ARATH Signal peptide peptidase-like 1 OS=Arabidopsis thaliana GN=SPPL1 PE=2 SV=1

 Score =  113 bits (282), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 105/207 (50%), Gaps = 44/207 (21%)

Query: 75  FIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWV-- 132
            + C++    +L+  HW+ NNL G++  +  +  + L N+ I  +LL  LF+YDIFWV  
Sbjct: 133 LVACAMTVVAWLISGHWVLNNLLGISICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFF 192

Query: 133 ----FGTNVMVTVA------------------------KSFEAPIKLVFPQDLLE---HG 161
               FG NVMV VA                        K  E P+K+VFP++LL     G
Sbjct: 193 SERFFGANVMVAVATQQASNPVHTVANSLNLPGLQLITKKLELPVKIVFPRNLLGGVVPG 252

Query: 162 VSANNFAMLGLGDIVVPGIFIALLLRFDLSLNR-----------RSNTYFNTAFLAYFLG 210
           VSA++F MLGLGD+ +P + +AL+L FD    R           + + Y   A   Y +G
Sbjct: 253 VSASDFMMLGLGDMAIPAMLLALVLCFDHRKTRDVVNIFDLKSSKGHKYIWYALPGYAIG 312

Query: 211 LMATIFVMHVFKHAQPALLYLVPACLG 237
           L+A +    +    QPALLYLVP+ LG
Sbjct: 313 LVAALAAGVLTHSPQPALLYLVPSTLG 339

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q7G7C7|SIPL1_ORYSJ Signal peptide peptidase-like 1 OS=Oryza sativa subsp. japonica GN=SPPL1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 50/227 (22%)

Query: 85  YLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWV------FGTNVM 138
           +LV  HW+ NNL G++  +  +  + L N+ I  +LL  LF+YD+FWV      FG NVM
Sbjct: 143 WLVSGHWLLNNLLGISICIAFVSHVRLPNIKICALLLVCLFVYDVFWVFFSERFFGANVM 202

Query: 139 VTVA------------------------KSFEAPIKLVFPQDL---LEHGVSANNFAMLG 171
           V+VA                        K  E P+KLVFP+ L   L  G S  ++ MLG
Sbjct: 203 VSVATQKASNPVHTVANKLSLPGLQLITKKLELPVKLVFPRSLMGGLAPGSSPGDYMMLG 262

Query: 172 LGDIVVPGIFIALLLRF------DLSLNR-----RSNTYFNTAFLAYFLGLMATIFVMHV 220
           LGD+ +PG+ +AL+L F      D+S+++     +   Y   A   Y +GL+  +    +
Sbjct: 263 LGDMAIPGMLLALVLSFDHRKIKDMSVSQDMPPSKQRKYVWYALTGYGVGLVTALAAGIL 322

Query: 221 FKHAQPALLYLVPACLGLPLLIIARI-----SLMDNRYPTAGQRSHL 262
            +  QPALLYLVP+ LG P++ ++ +      L +   P    ++HL
Sbjct: 323 SQSPQPALLYLVPSTLG-PVMYMSWLRNELWELWEGSRPIINDKAHL 368

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P34248|YKK0_YEAST Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 21/186 (11%)

Query: 73  VCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWV 132
           V  IV +V+  +YL    W+ +N   +  A+  I  L L N+  G ++L  LF YDI +V
Sbjct: 313 VLSIVSTVY--FYLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFV 370

Query: 133 FGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSAN--NFAMLGLGDIVVPGIFIALLLRFDL 190
           FGT+VMVTVA + + P+KL  P   ++   + N  NF++LGLGDI +PG+FIA+  ++D+
Sbjct: 371 FGTDVMVTVATNLDIPVKLSLP---VKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDI 427

Query: 191 ---SLNRRSNT-----------YFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACL 236
               L+                YF TA ++Y   L++ +  + +F  AQPALLY+VP+ L
Sbjct: 428 WKWHLDHDDTEFHFLNWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLL 487

Query: 237 GLPLLI 242
              +L+
Sbjct: 488 ISTILV 493

May act as intramembrane protease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	587
91086655	370	PREDICTED: similar to AGAP008838-PA [Tri	0.396	0.629	0.759	1e-100
312373130	364	hypothetical protein AND_18264 [Anophele	0.402	0.648	0.740	5e-98
157131116	412	signal peptide peptidase [Aedes aegypti]	0.400	0.570	0.739	1e-97
170029228	408	signal peptide peptidase [Culex quinquef	0.400	0.575	0.743	2e-97
157131118	400	signal peptide peptidase [Aedes aegypti]	0.400	0.587	0.739	2e-97
158299450	367	AGAP008838-PA [Anopheles gambiae str. PE	0.408	0.653	0.721	3e-97
194853547	389	GG24644 [Drosophila erecta] gi|190660049	0.396	0.598	0.717	2e-96
195388354	398	GJ19708 [Drosophila virilis] gi|19414930	0.396	0.585	0.713	3e-96
194766491	389	GF24718 [Drosophila ananassae] gi|190617	0.396	0.598	0.713	4e-96
371536097	384	putative signal peptide protease [Lucili	0.396	0.606	0.713	4e-96

>gi|91086655|ref|XP_967836.1| PREDICTED: similar to AGAP008838-PA [Tribolium castaneum] gi|270010389|gb|EFA06837.1| hypothetical protein TcasGA2_TC009780 [Tribolium castaneum]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/241 (75%), Positives = 209/241 (86%), Gaps = 8/241 (3%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           INLLLTGYFF LGVLAL +LLSPV+S LVPAAIPNIPFH+ F +G       +G  A  +
Sbjct: 99  INLLLTGYFFFLGVLALTHLLSPVVSKLVPAAIPNIPFHITFKQG-------EGESAQYL 151

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           I DY+FS++D+V    CS+ G+WYLV+KHWIANNLFGLAFAVN +ELLHLNNV+ G ILL
Sbjct: 152 I-DYRFSTYDVVSLAACSLVGAWYLVQKHWIANNLFGLAFAVNAVELLHLNNVITGCILL 210

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
           CGLF YDIFWVFGT+VMVTVAKSFEAPIKLVFPQDLL++G++ANNFAMLGLGDIV+PGIF
Sbjct: 211 CGLFFYDIFWVFGTDVMVTVAKSFEAPIKLVFPQDLLQNGLAANNFAMLGLGDIVIPGIF 270

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           IALLLRFD SL R++ TYF+ A LAYFLGLMATIFVMHVFKHAQPALLYLVPAC+G PLL
Sbjct: 271 IALLLRFDNSLKRQTKTYFHAACLAYFLGLMATIFVMHVFKHAQPALLYLVPACVGTPLL 330

Query: 242 I 242
           +
Sbjct: 331 L 331

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373130|gb|EFR20942.1| hypothetical protein AND_18264 [Anopheles darlingi]

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 177/239 (74%), Positives = 205/239 (85%), Gaps = 3/239 (1%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRG-ATNEEKKDGSEALL 60
           IN LLTGYFF LGV+AL +LLSPVIS L+PA+IP IP+HL F +G A   EKK   +  L
Sbjct: 113 INFLLTGYFFFLGVMALSHLLSPVISSLIPASIPKIPYHLSFVQGPAEGGEKKSKEKRFL 172

Query: 61  VIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVIL 120
           +  DY+F++HDIVCFIV  V   WYL++KHWIANNL G+AFAVNG+ELLHLNNV  G IL
Sbjct: 173 I--DYRFTTHDIVCFIVALVISVWYLLQKHWIANNLLGIAFAVNGVELLHLNNVATGCIL 230

Query: 121 LCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGI 180
           LCGLF+YDIFWVFGTNVMVTVA+SFEAPIKLVFPQDL+ +G+SA+NFA+LGLGDIV+PGI
Sbjct: 231 LCGLFVYDIFWVFGTNVMVTVARSFEAPIKLVFPQDLITNGLSASNFAVLGLGDIVIPGI 290

Query: 181 FIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLP 239
           FIALLLRFD SL R+SNTYF   ++AYF+GL+ATIFVMHVFKHAQPALLYLVPACLG P
Sbjct: 291 FIALLLRFDNSLKRKSNTYFYATYIAYFVGLLATIFVMHVFKHAQPALLYLVPACLGTP 349

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131116|ref|XP_001655809.1| signal peptide peptidase [Aedes aegypti] gi|108871652|gb|EAT35877.1| AAEL011989-PA [Aedes aegypti]

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/238 (73%), Positives = 201/238 (84%), Gaps = 3/238 (1%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           IN LLTGYFF LGV+AL +LLSPVI  L+P++IP IP+HL F +G T   K D    L+ 
Sbjct: 112 INFLLTGYFFFLGVMALAHLLSPVIGSLIPSSIPKIPYHLSFSQGPTEGVKDDKKSYLI- 170

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             DYKF++HDIVCFI+  + G WYL+KKHWIANNL GLAFAVNG+ELLHLNNV+IG ILL
Sbjct: 171 --DYKFTTHDIVCFIISLIIGVWYLLKKHWIANNLLGLAFAVNGVELLHLNNVVIGCILL 228

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLF+YDIFWVFGTNVMVTVAKSFEAPIKLVFPQDL+ +G++A+NFA+LGLGDIV+PGIF
Sbjct: 229 SGLFVYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLITNGLAASNFAVLGLGDIVIPGIF 288

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLP 239
           IALLLRFD SL R+SN YF   F AYF GL+ATIFVMHVFKHAQPALLYLVPACLG P
Sbjct: 289 IALLLRFDNSLKRKSNLYFYATFTAYFFGLLATIFVMHVFKHAQPALLYLVPACLGTP 346

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029228|ref|XP_001842495.1| signal peptide peptidase [Culex quinquefasciatus] gi|167881598|gb|EDS44981.1| signal peptide peptidase [Culex quinquefasciatus]

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/238 (74%), Positives = 204/238 (85%), Gaps = 3/238 (1%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           IN LLTGYFF LGV+AL +LLSPVIS L+PA+IP IP+HL F +G T E  KD +E+ L+
Sbjct: 113 INFLLTGYFFFLGVMALAHLLSPVISSLIPASIPKIPYHLSFIQGPT-EGSKDETESYLI 171

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             DYKF++HDIVCFI+  V G WYL++KHWIANNL GLAFAVNG+ELLHLNN++ G ILL
Sbjct: 172 --DYKFTTHDIVCFIISLVIGVWYLLQKHWIANNLLGLAFAVNGVELLHLNNIVTGCILL 229

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLF YDIFWVFGTNVMVTVA+SFEAPIKLVFPQD++ +G+SA+NFA+LGLGDIV+PGIF
Sbjct: 230 GGLFFYDIFWVFGTNVMVTVARSFEAPIKLVFPQDIITNGLSASNFAVLGLGDIVIPGIF 289

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLP 239
           IALLLRFD SL R+SN YF   F AYF GL+ATIFVMHVFKHAQPALLYLVPACLG P
Sbjct: 290 IALLLRFDNSLKRKSNFYFYATFTAYFFGLLATIFVMHVFKHAQPALLYLVPACLGTP 347

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131118|ref|XP_001655810.1| signal peptide peptidase [Aedes aegypti] gi|108871653|gb|EAT35878.1| AAEL011989-PB [Aedes aegypti]

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 176/238 (73%), Positives = 201/238 (84%), Gaps = 3/238 (1%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           IN LLTGYFF LGV+AL +LLSPVI  L+P++IP IP+HL F +G T   K D    L+ 
Sbjct: 112 INFLLTGYFFFLGVMALAHLLSPVIGSLIPSSIPKIPYHLSFSQGPTEGVKDDKKSYLI- 170

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             DYKF++HDIVCFI+  + G WYL+KKHWIANNL GLAFAVNG+ELLHLNNV+IG ILL
Sbjct: 171 --DYKFTTHDIVCFIISLIIGVWYLLKKHWIANNLLGLAFAVNGVELLHLNNVVIGCILL 228

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLF+YDIFWVFGTNVMVTVAKSFEAPIKLVFPQDL+ +G++A+NFA+LGLGDIV+PGIF
Sbjct: 229 SGLFVYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLITNGLAASNFAVLGLGDIVIPGIF 288

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLP 239
           IALLLRFD SL R+SN YF   F AYF GL+ATIFVMHVFKHAQPALLYLVPACLG P
Sbjct: 289 IALLLRFDNSLKRKSNLYFYATFTAYFFGLLATIFVMHVFKHAQPALLYLVPACLGTP 346

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299450|ref|XP_319582.4| AGAP008838-PA [Anopheles gambiae str. PEST] gi|157013525|gb|EAA14832.4| AGAP008838-PA [Anopheles gambiae str. PEST]

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 174/241 (72%), Positives = 204/241 (84%), Gaps = 1/241 (0%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           IN LLTGYFF LGV+AL +LLSPVIS L+PA+IP IP+HL F +G      K   E   +
Sbjct: 116 INYLLTGYFFFLGVMALSHLLSPVISSLIPASIPKIPYHLSFVQGPPEGGDKKSKEKKYL 175

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           I DY+F++HD+VCFIV  V   WYL++KHWIANNL GL+FAVNG+ELLHLNN+  G ILL
Sbjct: 176 I-DYRFTTHDVVCFIVALVISVWYLLQKHWIANNLLGLSFAVNGVELLHLNNIATGCILL 234

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
           CGLF+YDIFWVFGTNVMVTVAKSFEAPIK+VFPQDL+ +G++A+NFA+LGLGDIV+PGIF
Sbjct: 235 CGLFVYDIFWVFGTNVMVTVAKSFEAPIKIVFPQDLMTNGLAASNFAVLGLGDIVIPGIF 294

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           IALLLRFD SL R+S TYF   F+AYF+GL+ATIFVMHVFKHAQPALLYLVPACLG PLL
Sbjct: 295 IALLLRFDNSLKRKSKTYFYATFIAYFIGLLATIFVMHVFKHAQPALLYLVPACLGTPLL 354

Query: 242 I 242
           +
Sbjct: 355 L 355

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194853547|ref|XP_001968182.1| GG24644 [Drosophila erecta] gi|190660049|gb|EDV57241.1| GG24644 [Drosophila erecta]

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 173/241 (71%), Positives = 207/241 (85%), Gaps = 8/241 (3%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           IN LLTGYFF+LGV+AL +LLSPVI+ L+PAA+P +PFH+ F +G   ++K+D       
Sbjct: 110 INYLLTGYFFVLGVIALAHLLSPVINSLMPAAVPKVPFHILFTKG-EGKQKED------- 161

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           I +YKFS+HDIVC ++ SV G WYL+KKHWIANNLFGLAFA+NG+E+LHLNN + GVILL
Sbjct: 162 IVNYKFSTHDIVCLVISSVIGVWYLLKKHWIANNLFGLAFAINGVEMLHLNNFVTGVILL 221

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLF YDIFWVFGTNVMVTVAKSFEAPIKLVFPQDL+E+G++A+NFAMLGLGDIV+PGIF
Sbjct: 222 SGLFFYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLIENGLNASNFAMLGLGDIVIPGIF 281

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           IALLLRFD S  R++  YF +  +AYFLGL+ATIFVMHVFKHAQPALLYLVPAC+G PLL
Sbjct: 282 IALLLRFDDSKKRKTRIYFYSTLIAYFLGLLATIFVMHVFKHAQPALLYLVPACMGTPLL 341

Query: 242 I 242
           +
Sbjct: 342 V 342

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388354|ref|XP_002052845.1| GJ19708 [Drosophila virilis] gi|194149302|gb|EDW65000.1| GJ19708 [Drosophila virilis]

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 172/241 (71%), Positives = 206/241 (85%), Gaps = 8/241 (3%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           INLLLTGYFF+LGV+AL +LLSPVI+ L+PAA+P +PFH+ F +G   + K+D       
Sbjct: 115 INLLLTGYFFVLGVIALAHLLSPVINSLMPAAVPKVPFHIHFTKG-EGKHKED------- 166

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           I +YKFS+HDIVC I+ S+ G WYL+KKHWIANN+FGLAFA+NG+E+LHLNN + GVILL
Sbjct: 167 IINYKFSTHDIVCLIISSIIGVWYLLKKHWIANNMFGLAFAINGVEMLHLNNFVTGVILL 226

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLF YDIFWVFGTNVMVTVAKSFEAPIKLVFPQD+L++G++A+NFAMLGLGDIV+PGIF
Sbjct: 227 SGLFFYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDILDNGLNASNFAMLGLGDIVIPGIF 286

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           IALLLRFD S  R++  YF +   AYF+GLMATIFVMHVFKHAQPALLYLVPAC+G PLL
Sbjct: 287 IALLLRFDDSKKRKTRIYFYSTLAAYFMGLMATIFVMHVFKHAQPALLYLVPACMGTPLL 346

Query: 242 I 242
           +
Sbjct: 347 V 347

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766491|ref|XP_001965358.1| GF24718 [Drosophila ananassae] gi|190617968|gb|EDV33492.1| GF24718 [Drosophila ananassae]

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 172/241 (71%), Positives = 205/241 (85%), Gaps = 8/241 (3%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           IN LLTGYFF+LGV+AL +LLSPV++ L+PAA+P +PFH+ F +G   + K+D       
Sbjct: 110 INYLLTGYFFVLGVIALAHLLSPVMNSLMPAAVPKVPFHILFTKG-EGKHKED------- 161

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           I +Y+FS+HDIVC ++ SV G WYL+KKHWIANNLFGLAFA+NG+E+LHLNN + GVILL
Sbjct: 162 IINYRFSTHDIVCLVISSVIGVWYLLKKHWIANNLFGLAFAINGVEMLHLNNFVTGVILL 221

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLF YDIFWVFGTNVMVTVAKSFEAPIKLVFPQDL+EHG++A+NFAMLGLGDIV+PGIF
Sbjct: 222 SGLFFYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLIEHGLNASNFAMLGLGDIVIPGIF 281

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           IALLLRFD S  R++  YF +   AYFLGL+ATIFVMHVFKHAQPALLYLVPAC+G PLL
Sbjct: 282 IALLLRFDDSKKRKTRIYFYSTLTAYFLGLLATIFVMHVFKHAQPALLYLVPACMGTPLL 341

Query: 242 I 242
           +
Sbjct: 342 V 342

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|371536097|gb|AEX33293.1| putative signal peptide protease [Lucilia sericata]

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 172/241 (71%), Positives = 204/241 (84%), Gaps = 8/241 (3%)

Query: 2   INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
           INLLLTGYFF+LGV+AL +LLSP+ + L+PAA+P IPFH+ F RG   + K+D       
Sbjct: 110 INLLLTGYFFVLGVIALAHLLSPIANSLMPAAVPKIPFHIHFTRG-EGKNKED------- 161

Query: 62  IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           I +YKFS+HDIVC ++ +  G WYL+KKHWIANN+FGLAFAVNG+E+LHLNN++ G ILL
Sbjct: 162 IINYKFSTHDIVCLVISAAIGVWYLLKKHWIANNMFGLAFAVNGVEMLHLNNIVTGCILL 221

Query: 122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
            GLF YDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLL +G++A+NFAMLGLGDIV+PGIF
Sbjct: 222 SGLFFYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLTNGLNASNFAMLGLGDIVIPGIF 281

Query: 182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
           IALLLRFD S  R+S  YF +  +AYF+GLMATIFVMHVFKHAQPALLYLVPAC+G PLL
Sbjct: 282 IALLLRFDHSTKRKSRIYFYSTLVAYFMGLMATIFVMHVFKHAQPALLYLVPACMGTPLL 341

Query: 242 I 242
           +
Sbjct: 342 V 342

Source: Lucilia sericata

Species: Lucilia sericata

Genus: Lucilia

Family: Calliphoridae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	587
FB|FBgn0031260	389	Spp "Signal peptide peptidase"	0.396	0.598	0.713	5e-92
UNIPROTKB|Q8TCT9	377	HM13 "Minor histocompatibility	0.396	0.618	0.651	2.4e-83
UNIPROTKB|F1MYW7	377	HM13 "Uncharacterized protein"	0.396	0.618	0.655	6.4e-83
MGI|MGI:95886	378	H13 "histocompatibility 13" [M	0.396	0.616	0.659	8.2e-83
UNIPROTKB|E2RB96	427	HM13 "Uncharacterized protein"	0.396	0.545	0.651	1.3e-82
UNIPROTKB|E2RB97	378	HM13 "Uncharacterized protein"	0.396	0.616	0.651	1.3e-82
UNIPROTKB|F1S7H6	358	HM13 "Uncharacterized protein"	0.396	0.650	0.651	1.3e-82
ZFIN|ZDB-GENE-020802-3	366	hm13 "histocompatibility (mino	0.396	0.636	0.647	4.5e-82
UNIPROTKB|F1NXN9	319	HM13 "Uncharacterized protein"	0.369	0.680	0.648	8.1e-76
DICTYBASE|DDB_G0292836	354	DDB_G0292836 "peptidase A22B f	0.410	0.680	0.482	1.1e-55

FB|FBgn0031260 Spp "Signal peptide peptidase" [Drosophila melanogaster (taxid:7227)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 172/241 (71%), Positives = 205/241 (85%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             IN LLTGYFF+LGV+AL +LLSPVI+ L+PAA+P +PFH+ F +G   + K+D       
Sbjct:   110 INYLLTGYFFVLGVIALAHLLSPVINSLMPAAVPKVPFHILFTKGE-GKHKED------- 161

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +YKFS+HDIVC ++ S  G WYL+KKHWIANNLFGLAFA+NG+E+LHLNN + GVILL
Sbjct:   162 IVNYKFSTHDIVCLVISSAIGVWYLLKKHWIANNLFGLAFAINGVEMLHLNNFVTGVILL 221

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLF YDIFWVFGTNVMVTVAKSFEAPIKLVFPQDL+E+G++A+NFAMLGLGDIV+PGIF
Sbjct:   222 SGLFFYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLIENGLNASNFAMLGLGDIVIPGIF 281

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
             IALLLRFD S  R++  YF +  +AYFLGL+ATIFVMHVFKHAQPALLYLVPAC+G PLL
Sbjct:   282 IALLLRFDDSKKRKTRIYFYSTLIAYFLGLLATIFVMHVFKHAQPALLYLVPACMGTPLL 341

Query:   242 I 242
             +
Sbjct:   342 V 342

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IDA;NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0007424 "open tracheal system development" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006465 "signal peptide processing" evidence=IDA

GO:0034620 "cellular response to unfolded protein" evidence=IMP

UNIPROTKB|Q8TCT9 HM13 "Minor histocompatibility antigen H13" [Homo sapiens (taxid:9606)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 157/241 (65%), Positives = 195/241 (80%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             INLLL+ YFF+LG+LAL + +SP ++   PA+ PN  + L F +G+  E K++       
Sbjct:   101 INLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGS-GENKEE------- 152

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +Y+F + D+VC  + S+ G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct:   153 IINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 212

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLFIYD+FWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ ANNFAMLGLGD+V+PGIF
Sbjct:   213 GGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIF 272

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
             IALLLRFD+SL + ++TYF T+F AY  GL  TIF+MH+FKHAQPALLYLVPAC+G P+L
Sbjct:   273 IALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVL 332

Query:   242 I 242
             +
Sbjct:   333 V 333

GO:0005886 "plasma membrane" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0006509 "membrane protein ectodomain proteolysis" evidence=IMP

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IMP

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IMP

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

UNIPROTKB|F1MYW7 HM13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 158/241 (65%), Positives = 195/241 (80%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             INLLL+ YFF+LG+LAL + +SP+++   PA  PN  + L F +G+  E K++       
Sbjct:   101 INLLLSMYFFVLGILALSHTISPLMNKFFPANFPNRQYQLLFTQGS-GENKEE------- 152

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +Y+F + D+VC  + S+ G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct:   153 IINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 212

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ A+NFAMLGLGDIV+PGIF
Sbjct:   213 GGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIF 272

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
             IALLLRFD+SL + ++TYF T+F AY  GL  TIF+MH+FKHAQPALLYLVPAC+G P+L
Sbjct:   273 IALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVL 332

Query:   242 I 242
             +
Sbjct:   333 V 333

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

MGI|MGI:95886 H13 "histocompatibility 13" [Mus musculus (taxid:10090)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 159/241 (65%), Positives = 194/241 (80%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             INLLL+ YFF+LG+LAL + +SP ++   PA  PN  + L F +G+  E K++       
Sbjct:   101 INLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGS-GENKEE------- 152

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +Y+F + D+VC  + SV G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct:   153 IINYEFDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 212

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ A+NFAMLGLGDIV+PGIF
Sbjct:   213 GGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIF 272

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
             IALLLRFD+SL + ++TYF T+F AY  GL  TIF+MH+FKHAQPALLYLVPAC+G P+L
Sbjct:   273 IALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVL 332

Query:   242 I 242
             +
Sbjct:   333 V 333

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISO

UNIPROTKB|E2RB96 HM13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 157/241 (65%), Positives = 194/241 (80%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             INLLL+ YFF+LG+LAL + +SP ++   PA  PN  + L F +G+  E K++       
Sbjct:   101 INLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGS-GENKEE------- 152

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +Y+F + D+VC  + S+ G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct:   153 IINYEFDAKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 212

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLFIYD+FWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ A+NFAMLGLGDIV+PGIF
Sbjct:   213 GGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIF 272

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
             IALLLRFD+SL + ++TYF T+F AY  GL  TIF+MH+FKHAQPALLYLVPAC+G P+L
Sbjct:   273 IALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVL 332

Query:   242 I 242
             +
Sbjct:   333 V 333

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|E2RB97 HM13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 157/241 (65%), Positives = 194/241 (80%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             INLLL+ YFF+LG+LAL + +SP ++   PA  PN  + L F +G+  E K++       
Sbjct:   101 INLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGS-GENKEE------- 152

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +Y+F + D+VC  + S+ G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct:   153 IINYEFDAKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 212

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLFIYD+FWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ A+NFAMLGLGDIV+PGIF
Sbjct:   213 GGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIF 272

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
             IALLLRFD+SL + ++TYF T+F AY  GL  TIF+MH+FKHAQPALLYLVPAC+G P+L
Sbjct:   273 IALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVL 332

Query:   242 I 242
             +
Sbjct:   333 V 333

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1S7H6 HM13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 157/241 (65%), Positives = 194/241 (80%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             INLLL+ YFF+LG+LAL + +SP ++   PA  PN  + L F +G+  E K++       
Sbjct:    82 INLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGS-GESKEE------- 133

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +Y+F + D+VC  + S+ G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct:   134 IINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 193

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLFIYD+FWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ A+NFAMLGLGDIV+PGIF
Sbjct:   194 GGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIF 253

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
             IALLLRFD+SL + ++TYF T+F AY  GL  TIF+MH+FKHAQPALLYLVPAC+G P+L
Sbjct:   254 IALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVL 313

Query:   242 I 242
             +
Sbjct:   314 V 314

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-020802-3 hm13 "histocompatibility (minor) 13" [Danio rerio (taxid:7955)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 156/241 (64%), Positives = 193/241 (80%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             +N+LL+ YFF+LG+LAL + +SP +  + PA + N  + L F +G+  E K++       
Sbjct:   104 VNMLLSMYFFVLGILALSHTMSPFMCRVFPANLSNKQYQLLFTQGS-GESKEE------- 155

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +Y+F + D++C  + SV G WY++KKHWIANNLFGLAFA+NG+ELLHLNNV  G ILL
Sbjct:   156 IVNYEFDTKDLICLCISSVVGVWYVLKKHWIANNLFGLAFALNGVELLHLNNVSTGCILL 215

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLF+YD+FWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ A+NFAMLGLGDIV+PGIF
Sbjct:   216 GGLFVYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLGASNFAMLGLGDIVIPGIF 275

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPLL 241
             IALLLRFD+SL + + TYF T+FLAY  GL  TIFVMH FKHAQPALLYLVPAC+G P+L
Sbjct:   276 IALLLRFDVSLKKNTRTYFYTSFLAYIFGLGLTIFVMHTFKHAQPALLYLVPACVGFPVL 335

Query:   242 I 242
             +
Sbjct:   336 V 336

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043523 "regulation of neuron apoptotic process" evidence=IMP

UNIPROTKB|F1NXN9 HM13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 146/225 (64%), Positives = 181/225 (80%)

Query:     2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLV 61
             INLLL+ YFF+LG+LAL + +SP+++   PA  PN  + L F +G+  E K++       
Sbjct:   103 INLLLSMYFFVLGILALSHTISPMMNRFFPANFPNKQYQLLFTQGS-GESKEE------- 154

Query:    62 IFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
             I +Y+F + D+VC  + SV G WYL++KHWIANNLFGLAF++NG+ELLHLNNV  G ILL
Sbjct:   155 IVNYEFDTKDLVCLALSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILL 214

Query:   122 CGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIF 181
              GLFIYD+FWVFGTNVMVTVAKSFEAPIKLVFPQDLLE G+ A+NFAMLGLGDIV+PGIF
Sbjct:   215 GGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIF 274

Query:   182 IALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQP 226
             IALLLRFD+SL + ++TYF T+F+AY  GL  TIF+MH+FKHAQP
Sbjct:   275 IALLLRFDISLKKNTHTYFYTSFVAYIFGLGLTIFIMHIFKHAQP 319

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

DICTYBASE|DDB_G0292836 DDB_G0292836 "peptidase A22B family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 121/251 (48%), Positives = 160/251 (63%)

Query:     1 MINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALL 60
             +INL+L+ YF L+G +A+  +LS +   +   +  +     + +       K    + + 
Sbjct:    83 LINLILSYYFLLIGAIAMTNVLSSLFKYMFVGSSGSGKNKKQNEVKPLISFKIPAIKFIT 142

Query:    61 VIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVIL 120
                D K   +DIV FI    F  WY+  KHWIANN+FGL F++ GI  + L    +GV+L
Sbjct:   143 DAKDVKIDIYDIVSFIFAIGFSLWYIKTKHWIANNIFGLTFSIQGISFISLTEYSVGVML 202

Query:   121 LCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGI 180
             L GLF YDIFWVFGT+VMVTVAKSF+APIKL+FP+D+         F+MLGLGDIV+PGI
Sbjct:   203 LVGLFFYDIFWVFGTDVMVTVAKSFDAPIKLLFPKDIF---ADVYQFSMLGLGDIVLPGI 259

Query:   181 FIALLLRFDLSLNRRSN-------TYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVP 233
             FIALLLRFD  +++ S        TYFN+  +AY LGL  TIFVMH FK AQPALLYLVP
Sbjct:   260 FIALLLRFDRHIHQESRSKGPMKKTYFNSTLIAYALGLFTTIFVMHTFKAAQPALLYLVP 319

Query:   234 ACLGLPLLIIA 244
              C+G  +++ A
Sbjct:   320 FCVGSSMIVSA 330

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D8V0	HM13_MOUSE	3, ., 4, ., 2, 3, ., -	0.6597	0.3969	0.6164	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	587
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	2e-71
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	1e-46
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	5e-44
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	3e-24
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	5e-10
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	3e-05

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score =  231 bits (590), Expect = 2e-71
 Identities = 110/251 (43%), Positives = 151/251 (60%), Gaps = 29/251 (11%)

Query: 4   LLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIF 63
           L+LTGYF +LG +AL +L+ P                     GA    KK      L + 
Sbjct: 44  LVLTGYFCILGAIALAFLILPPC------------IRRLSFMGAYRFPKKKSK---LELK 88

Query: 64  DYKFSSHDIVCFIVCSVFG-SWYLVKK-HWIANNLFGLAFAVNGIELLHLNNVMIGVILL 121
           + +F+  ++V  ++C VF   WY+++K HWI  ++ G+A  +N I++L L N+ +G ILL
Sbjct: 89  NGRFTYSELVALLLCIVFAVWWYVLRKEHWILQDILGIALCINVIKILRLPNLKVGTILL 148

Query: 122 CGLFIYDIFWVF------GTNVMVTVAKS-FEA----PIKLVFPQDLLEHGVSANNFAML 170
            GLF YDIFWVF      GT+VMVTVA   F+A    P+KLVFP+    +  +   F+ML
Sbjct: 149 SGLFFYDIFWVFISPYIFGTSVMVTVATGPFDAAEKLPMKLVFPRLND-YPGNWGPFSML 207

Query: 171 GLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLY 230
           GLGDIV+PG+ IA  LRFD+S N+ S TYF +  +AY LGL+ T   +++FK AQPALLY
Sbjct: 208 GLGDIVMPGLLIAFCLRFDISKNKSSRTYFISTMIAYGLGLLITFVALNLFKAAQPALLY 267

Query: 231 LVPACLGLPLL 241
           LVP  LG  LL
Sbjct: 268 LVPCTLGTLLL 278

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score =  165 bits (419), Expect = 1e-46
 Identities = 98/317 (30%), Positives = 145/317 (45%), Gaps = 87/317 (27%)

Query: 301 TAFLAYFLGLMATIFVMHVFKHAQPALLYLFFSKDMIN--LLLTGYFFLLGVLALCYLLS 358
            +  A    + A+  ++ ++      L +   SK+ IN  L+LTGYF +LG +AL +L+ 
Sbjct: 10  DSRHAIIFPISASCTLLGLY------LFFKSLSKEYINSVLVLTGYFCILGAIALAFLIL 63

Query: 359 PVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDGSEALLVIFDYKFSS 418
           P                     GA    KK    +                 + + +F+ 
Sbjct: 64  PPC------------IRRLSFMGAYRFPKKKSKLE-----------------LKNGRFTY 94

Query: 419 HDIVCFIVCSVFG-SWYLVKK-HWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIY 476
            ++V  ++C VF   WY+++K HWI  ++ G+A  +N I++L L N+ +G ILL GLF Y
Sbjct: 95  SELVALLLCIVFAVWWYVLRKEHWILQDILGIALCINVIKILRLPNLKVGTILLSGLFFY 154

Query: 477 DIFWVF------GTNVMVTVAKS-FEA----PIKYV------------------------ 501
           DIFWVF      GT+VMVTVA   F+A    P+K V                        
Sbjct: 155 DIFWVFISPYIFGTSVMVTVATGPFDAAEKLPMKLVFPRLNDYPGNWGPFSMLGLGDIVM 214

Query: 502 -------------HESFKGLTQWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLG 548
                         ++    T + S   A+ LGL+ T   +++FK AQPALLYLVP  LG
Sbjct: 215 PGLLIAFCLRFDISKNKSSRTYFISTMIAYGLGLLITFVALNLFKAAQPALLYLVPCTLG 274

Query: 549 LPLLVALVKGDLSALIN 565
             LLVAL +G+L  L N
Sbjct: 275 TLLLVALWRGELKKLWN 291

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score =  156 bits (397), Expect = 5e-44
 Identities = 76/199 (38%), Positives = 104/199 (52%), Gaps = 15/199 (7%)

Query: 55  GSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKK-HWIANNLFGLAFAVNGIELLHLNN 113
                L +F        ++  +  +V G W + +K  WI  +L G++  +  + +L L +
Sbjct: 49  SLLYPLEVFRV-DYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLPS 107

Query: 114 VMIGVILLCGLFIYDIFWVFGT----NVMVTVAKSFEAPIKLVFPQDLLEHGVS------ 163
                ILL  LFIYDIF VFGT     VMV VA   + PI  VFP  L    +       
Sbjct: 108 EWTAWILLGALFIYDIFAVFGTPGPLRVMVEVATGRDEPI-KVFPALLYVPRLVVSFEDD 166

Query: 164 -ANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFK 222
               F+MLGLGDIV PGI +A   RFD+S+   SN +    F+AY +GL+ T+ ++ +FK
Sbjct: 167 EEERFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLAC-FVAYGIGLILTLVLLALFK 225

Query: 223 HAQPALLYLVPACLGLPLL 241
            AQPAL YLVP  L   LL
Sbjct: 226 KAQPALPYLVPFTLVFYLL 244

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score =  101 bits (254), Expect = 3e-24
 Identities = 66/279 (23%), Positives = 99/279 (35%), Gaps = 98/279 (35%)

Query: 327 LLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEE 386
           L+ L+     + ++L  YF  LGVL L  LL P+    V                     
Sbjct: 21  LVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRV--------------------- 59

Query: 387 KKDGSFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKK-HWIANNL 445
                                             ++  +  +V G W + +K  WI  +L
Sbjct: 60  -----------------------------DYPTLLILLLNFAVVGFWCIHRKGAWIQQDL 90

Query: 446 FGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGT----NVMVTVAKSFEAPI--- 498
            G++  +  + +L L +     ILL  LFIYDIF VFGT     VMV VA   + PI   
Sbjct: 91  IGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPGPLRVMVEVATGRDEPIKVF 150

Query: 499 ----------------------------------------KYVHESFKGLTQWFSNFFAW 518
                                                   ++          + + F A+
Sbjct: 151 PALLYVPRLVVSFEDDEEERFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACFVAY 210

Query: 519 HLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVK 557
            +GL+ T+ ++ +FK AQPAL YLVP  L   LL AL++
Sbjct: 211 GIGLILTLVLLALFKKAQPALPYLVPFTLVFYLLTALLR 249

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 290 SLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYL 330
           S N+ S TYF +  +AY LGL+ T   +++FK AQPALLYL
Sbjct: 228 SKNKSSRTYFISTMIAYGLGLLITFVALNLFKAAQPALLYL 268

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 293 RRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYL 330
           R  + YF   F+AY +GL+ T+ ++ +FK AQPAL YL
Sbjct: 197 RSDSNYFLACFVAYGIGLILTLVLLALFKKAQPALPYL 234

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	587
KOG2443|consensus	362		100.0
KOG2443|consensus	362		100.0
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
KOG2442|consensus	541		100.0
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	100.0
KOG2442|consensus	541		100.0
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	99.97
PF06550	283	DUF1119: Protein of unknown function (DUF1119); In	99.54
COG3389	277	Uncharacterized protein conserved in archaea [Func	99.32
PF06550	283	DUF1119: Protein of unknown function (DUF1119); In	97.04
PF01080	403	Presenilin: Presenilin Alzheimer disease; InterPro	92.51
COG3389	277	Uncharacterized protein conserved in archaea [Func	89.44
KOG2736|consensus	406		88.96

>KOG2443|consensus

Probab=100.00  E-value=1.1e-67  Score=541.65  Aligned_cols=247  Identities=56%  Similarity=0.976  Sum_probs=232.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhhccccccCccCCcceEEeeccCCCccccccccccceeEEEEEeccchhHHHHHHHHH
Q psy980            2 INLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVF   81 (587)
Q Consensus         2 in~ll~~Yf~~lGv~al~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~dl~~~~~s~~~   81 (587)
                      +| +|+.||++.|+.|+++++.|+++...|...|+.+||+.++++.+ ++||       +..|.+||+.|++++..|+.+
T Consensus        94 ~~-ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~~~~~~-~~~~-------~~~~~~Ft~~~iv~~vls~~i  164 (362)
T KOG2443|consen   94 IN-LLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLFPRGPG-EKKE-------FICNGKFTRAQIVALVLSSMI  164 (362)
T ss_pred             HH-HHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheeeeccCC-cccc-------eeecccccHHHHHHHHHHHHH
Confidence            34 89999999999999999999999777777788889888888776 4443       789999999999999999999


Q ss_pred             HhhhhccccchHHhHHHHHHHHHHHHhcccChhHHHHHHHHHHhhhheeeEeccchhhhhcccCCCCeEEEecccccccC
Q psy980           82 GSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEHG  161 (587)
Q Consensus        82 ~~~y~~~~~WilnNilgi~~~i~~i~~l~l~s~k~g~iLL~gLf~YDIFwVFgtsVMvtVA~~~d~PikL~~P~~~~~~~  161 (587)
                      ++||+.++||++||++|+++|+++|+.+|+||+|+|++||.|||+|||||||||||||||||++|+|+|+++|++....+
T Consensus       165 ~v~~ll~~HWl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVFgTnVMVtVAt~~D~PikL~fP~~l~~~~  244 (362)
T KOG2443|consen  165 VVWYLLTKHWLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFGTNVMVTVATSLDAPIKLVFPQKLLFPG  244 (362)
T ss_pred             HHHHHhhhHHHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEecCceEEEeecccCCceEEecchhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             ccCCccccccCCcchhhHHHHHHHHHhhhccCCCC--ccchhHhHHHHHHHHHHHHHHHHHhCCCcceehhhhhhhhHHH
Q psy980          162 VSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRS--NTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLP  239 (587)
Q Consensus       162 ~~~~~~smLGLGDIViPGifIa~~lRFD~~~~~~~--~~YF~~s~igY~lGL~~T~~vm~~~~~aQPALLYLVP~~l~~~  239 (587)
                      ..+.+||||||||||+||+|+|+++|||.++++++  ++||+++++||.+||..|+++|++||+|||||||+||+|++.+
T Consensus       245 ~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~t~i~Y~~gL~~ti~~~~~FkaAQPALLYlVP~~l~~~  324 (362)
T KOG2443|consen  245 LTASNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHNTFIAYFLGLLTTIVVLHIFKAAQPALLYLVPACLGPL  324 (362)
T ss_pred             CccccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEEeHHHHHhhhHHHhhhhhhhhccchhhhhhhHHHHhHH
Confidence            55678999999999999999999999999987654  7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcCCCCC
Q psy980          240 LLIIARISLMDNRYPTAG  257 (587)
Q Consensus       240 ~l~A~~r~e~~~~~~~~~  257 (587)
                      +++|.+|||++.+|.-++
T Consensus       325 ll~A~~~gdlk~l~s~~~  342 (362)
T KOG2443|consen  325 LLMAYWRGDLKVLWSFDE  342 (362)
T ss_pred             HHHHHHccchHhhhCccc
Confidence            999999999999999885

>KOG2443|consensus

Probab=100.00  E-value=9.2e-59  Score=475.91  Aligned_cols=232  Identities=49%  Similarity=0.832  Sum_probs=211.4

Q ss_pred             HHHHhhhccccceeeeeccCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCccCCccccccccCCCccccccCCCCC
Q psy980          314 IFVMHVFKHAQPALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFD  393 (587)
Q Consensus       314 ~~~~~~~~~~~l~l~fKf~~~~~IN~lLt~YF~ilGv~AL~~~l~p~i~~l~p~~~p~~~~~~~~~~~~~~~~k~~~~f~  393 (587)
                      .|.+..|++.+++++||.++++++| +++.||++.|+.|+.+++.|+++...+...|+.+||.-+.++.++  |+     
T Consensus        71 fPi~~s~tLl~lyl~fk~ls~~~~~-ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~~~~~~~--~~-----  142 (362)
T KOG2443|consen   71 FPIIGSCTLLLLYLLFKPLSKELIN-LLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLFPRGPGE--KK-----  142 (362)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheeeeccCCc--cc-----
Confidence            7889999999999999999999999 999999999999999999999997777889999998655554322  10     


Q ss_pred             CCCCccccccccccceeeEEEEecccchhhhhHHHhhhhhhhccccchHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q psy980          394 RGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGL  473 (587)
Q Consensus       394 ~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~y~~~~~Wil~Nilgi~f~i~~i~~l~l~s~k~g~iLL~gL  473 (587)
                                     ..+++.+|+..|++|++.|+.+++||+.+|||++||++|++||+++|+.+||||+|+|++||.||
T Consensus       143 ---------------~~~~~~~Ft~~~iv~~vls~~i~v~~ll~~HWl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gL  207 (362)
T KOG2443|consen  143 ---------------EFICNGKFTRAQIVALVLSSMIVVWYLLTKHWLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGL  207 (362)
T ss_pred             ---------------ceeecccccHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHH
Confidence                           13578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhheeeEeeeceeehhhccCCCceeecccc-------------cCccc---------------------------hhHH
Q psy980          474 FIYDIFWVFGTNVMVTVAKSFEAPIKYVHES-------------FKGLT---------------------------QWFS  513 (587)
Q Consensus       474 F~YDIFwVFgt~VMvtVA~~~d~Pikl~~p~-------------~~gl~---------------------------~~~~  513 (587)
                      |+|||||||||||||||||++|+|+|+++|+             +.|++                           ||..
T Consensus       208 ffYDIfwVFgTnVMVtVAt~~D~PikL~fP~~l~~~~~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~  287 (362)
T KOG2443|consen  208 FFYDIFWVFGTNVMVTVATSLDAPIKLVFPQKLLFPGLTASNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHN  287 (362)
T ss_pred             HHHheEEEecCceEEEeecccCCceEEecchhhccCCCccccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEE
Confidence            9999999999999999999999999999984             12332                           2335


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCceeEeeccccchHHHHHHHhhchHHHHhcccc
Q psy980          514 NFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVV  568 (587)
Q Consensus       514 ~~~~Y~~GL~~T~~vm~~fk~aQPALLYLVP~~l~~~~~~A~~rgEl~~~w~~~~  568 (587)
                      +++||.+||.+|+++||+||+|||||||+||+|+++++++|+.|||+|++|++.+
T Consensus       288 t~i~Y~~gL~~ti~~~~~FkaAQPALLYlVP~~l~~~ll~A~~~gdlk~l~s~~~  342 (362)
T KOG2443|consen  288 TFIAYFLGLLTTIVVLHIFKAAQPALLYLVPACLGPLLLMAYWRGDLKVLWSFDE  342 (362)
T ss_pred             eHHHHHhhhHHHhhhhhhhhccchhhhhhhHHHHhHHHHHHHHccchHhhhCccc
Confidence            6899999999999999999999999999999999999999999999999999976

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=4.7e-57  Score=465.44  Aligned_cols=239  Identities=44%  Similarity=0.793  Sum_probs=0.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccccccCc----cCCcceEEeeccCCCccccccccccceeEEEEEeccchhHHHHHHH
Q psy980            4 LLLTGYFFLLGVLALCYLLSPVISPLVPAA----IPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCS   79 (587)
Q Consensus         4 ~ll~~Yf~~lGv~al~~~l~p~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~dl~~~~~s~   79 (587)
                      .+++.||++.|+.|+++.+.|.+.+..+..    .++.+.++..+++..            +.++.+++..|+++..+|+
T Consensus        43 ~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~s~  110 (298)
T PF04258_consen   43 YVLTVYFCLAGVIALSFLILPFLTYIFPFFPCRSFPWKKWKLSFPRRDI------------KPFSGSFTLSDLLSFLISL  110 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEEcccc------------cceeeeeeHHHHHHHHHHH
Confidence            499999999999999999999998866532    222233221111110            2467889999999999999


Q ss_pred             HHHhh-hhccc-cchHHhHHHHHHHHHHHHhcccChhHHHHHHHHHHhhhheeeEe------ccchhhhhccc-CCC---
Q psy980           80 VFGSW-YLVKK-HWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVF------GTNVMVTVAKS-FEA---  147 (587)
Q Consensus        80 ~~~~~-y~~~~-~WilnNilgi~~~i~~i~~l~l~s~k~g~iLL~gLf~YDIFwVF------gtsVMvtVA~~-~d~---  147 (587)
                      .++++ |+.++ ||++||++|+|+|+++++.+|+||+|+++++|+|+|+|||||||      |+|||++|||+ .|.   
T Consensus       111 ~~~~~w~~~~~~~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~s~~~~g~svM~~VA~~~~~~~~~  190 (298)
T PF04258_consen  111 AIAVVWYVYRNEHWILQNILGICFCINIISLIRLPSFKTATILLIGLFLYDIFWVFISPYFFGTSVMVTVATGGFDAPEK  190 (298)
T ss_dssp             ----S---------------------------------------------------------------------------
T ss_pred             HHHHHHHHhccchHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHhccccCCCchhhhhhccccccccC
Confidence            88775 66677 99999999999999999999999999999999999999999999      99999999999 888   


Q ss_pred             -CeEEEecccccccCccCCccccccCCcchhhHHHHHHHHHhhhccCCCCccchhHhHHHHHHHHHHHHHHHHHhCCCcc
Q psy980          148 -PIKLVFPQDLLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQP  226 (587)
Q Consensus       148 -PikL~~P~~~~~~~~~~~~~smLGLGDIViPGifIa~~lRFD~~~~~~~~~YF~~s~igY~lGL~~T~~vm~~~~~aQP  226 (587)
                       |+|+++|+..+.++..++++||||+||||+||+|+++|+|||.++++++++||.++++||++||++|+++++++|+|||
T Consensus       191 ~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~Yf~~~~~~Y~~Gl~~t~~~~~~~~~~QP  270 (298)
T PF04258_consen  191 LPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRNKSRKPYFIASLIGYALGLLLTFVALHLFKHGQP  270 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence             9999999986533346789999999999999999999999999986567789999999999999999999999999999


Q ss_pred             eehhhhhhhhHHHHHHHHHHHhhhhcCC
Q psy980          227 ALLYLVPACLGLPLLIIARISLMDNRYP  254 (587)
Q Consensus       227 ALLYLVP~~l~~~~l~A~~r~e~~~~~~  254 (587)
                      ||||+||+|+++++++|++|||++..|+
T Consensus       271 ALlylvP~~l~~~~~~a~~r~el~~~w~  298 (298)
T PF04258_consen  271 ALLYLVPCTLGSVLLVAWIRGELKDFWN  298 (298)
T ss_dssp             ----------------------------
T ss_pred             eehHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence            9999999999999999999999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>KOG2442|consensus

Probab=100.00  E-value=2.9e-46  Score=396.38  Aligned_cols=237  Identities=31%  Similarity=0.539  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccccccCccCCcceEEeeccCCCccccccccccceeEEEEEeccchhHHHHHHHHH-H
Q psy980            4 LLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVF-G   82 (587)
Q Consensus         4 ~ll~~Yf~~lGv~al~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~dl~~~~~s~~~-~   82 (587)
                      ++++..|++-|.-++-..+.|.+.+.......  ++.. .++.+                +  .....++-.++++.+ +
T Consensus       269 ~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~--~~~~-~~~l~----------------~--~~~~~l~l~~~Cia~aV  327 (541)
T KOG2442|consen  269 YVLIIIFCIGGAQGLYNCLAALVHRLPYGAAR--FPTL-APRLG----------------N--MSYRLLFLSILCIAVAV  327 (541)
T ss_pred             HHHhhheeecccchHHHHHHHHHhhhhhhccc--cccc-ccccC----------------C--hhHHHHHHHHhhhheeE
Confidence            45667777888888888888888765533211  0000 00100                0  011234444555555 4


Q ss_pred             hhhhccc---cchHHhHHHHHHHHHHHHhcccChhHHHHHHHHHHhhhheeeEe--------ccchhhhhcccC-----C
Q psy980           83 SWYLVKK---HWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVF--------GTNVMVTVAKSF-----E  146 (587)
Q Consensus        83 ~~y~~~~---~WilnNilgi~~~i~~i~~l~l~s~k~g~iLL~gLf~YDIFwVF--------gtsVMvtVA~~~-----d  146 (587)
                      +|.++|+   .|++||++|||+|++.++.+|+||+|++++||..+|+|||||||        |+|||+.||++-     .
T Consensus       328 ~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~Ek  407 (541)
T KOG2442|consen  328 VWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEEK  407 (541)
T ss_pred             EEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCCC
Confidence            5777777   59999999999999999999999999999999999999999999        568999999973     5


Q ss_pred             CCeEEEecccccc-cCccCCccccccCCcchhhHHHHHHHHHhhhccCCCCccchhHhHHHHHHHHHHHHHHHHHhCCCc
Q psy980          147 APIKLVFPQDLLE-HGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQ  225 (587)
Q Consensus       147 ~PikL~~P~~~~~-~~~~~~~~smLGLGDIViPGifIa~~lRFD~~~~~~~~~YF~~s~igY~lGL~~T~~vm~~~~~aQ  225 (587)
                      .|+.+++||...+ ...+.++|||||+|||++||++||+|+|||...+|.++.||.++++||.+||++|++++..+|.||
T Consensus       408 iPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYfv~~tvaYgiGLlvTfvaL~LM~~GQ  487 (541)
T KOG2442|consen  408 IPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYFVWSTVAYGIGLLVTFVALVLMKGGQ  487 (541)
T ss_pred             cceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEEehhHHHHHHHHHHHHHHHHHhcCCC
Confidence            8999999997622 123678999999999999999999999999998766889999999999999999999999999999


Q ss_pred             ceehhhhhhhhHHHHHHHHHHHhhhhcCCCCCCccc
Q psy980          226 PALLYLVPACLGLPLLIIARISLMDNRYPTAGQRSH  261 (587)
Q Consensus       226 PALLYLVP~~l~~~~l~A~~r~e~~~~~~~~~~~s~  261 (587)
                      ||||||||++|++.+.+|++|||+++.|.+.+..++
T Consensus       488 PALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~~  523 (541)
T KOG2442|consen  488 PALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQKM  523 (541)
T ss_pred             ceEEEEechHHHHHHHHHHHHHHHHHHhccCCcccC
Confidence            999999999999999999999999999999976554

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=8.9e-46  Score=381.79  Aligned_cols=230  Identities=40%  Similarity=0.737  Sum_probs=0.5

Q ss_pred             HHHHhhhccccceeeeeccCHHHHHH--HHHHHHHHHHHHHHHHhhhhhcccccCCccCCccccccccCCCccccccCCC
Q psy980          314 IFVMHVFKHAQPALLYLFFSKDMINL--LLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGS  391 (587)
Q Consensus       314 ~~~~~~~~~~~l~l~fKf~~~~~IN~--lLt~YF~ilGv~AL~~~l~p~i~~l~p~~~p~~~~~~~~~~~~~~~~k~~~~  391 (587)
                      .+++-++.+.+++.+||+++++++|.  ++++||+++|+.|+.+.+.|.+.+..+.. +.  ++.+..+     .+.  .
T Consensus        16 fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~-~~--~~~~~~~-----~~~--~   85 (298)
T PF04258_consen   16 FPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLTYIFPFF-PC--RSFPWKK-----WKL--S   85 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc--cccccce-----EEE--E
Confidence            67788888999999999999999997  99999999999999999998877654321 00  0000000     000  0


Q ss_pred             CCCCCCccccccccccceeeEEEEecccchhhhhHHHhhhhh-hhccc-cchHHHHHHHHHHHHHHhhcccCchHHHHHH
Q psy980          392 FDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFGSW-YLVKK-HWIANNLFGLAFAVNGIELLHLNNVMIGVIL  469 (587)
Q Consensus       392 f~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~-y~~~~-~Wil~Nilgi~f~i~~i~~l~l~s~k~g~iL  469 (587)
                      .++       ++.     +.++.+++..|+++..+|..++++ |..++ ||++||++|+|+|+++++.+|+||+|+|+++
T Consensus        86 ~~~-------~~~-----~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~~W~l~nilgi~~~i~~i~~i~l~s~k~~~il  153 (298)
T PF04258_consen   86 FPR-------RDI-----KPFSGSFTLSDLLSFLISLAIAVVWYVYRNEHWILQNILGICFCINIISLIRLPSFKTATIL  153 (298)
T ss_dssp             -----------------------------------------S--------------------------------------
T ss_pred             EEc-------ccc-----cceeeeeeHHHHHHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHHHheeccchHHHHHH
Confidence            000       000     125678888999999999998765 66677 9999999999999999999999999999999


Q ss_pred             HHHHHhhheeeEe------eeceeehhhcc-CCC----ceeecccccC-------------ccc----------------
Q psy980          470 LCGLFIYDIFWVF------GTNVMVTVAKS-FEA----PIKYVHESFK-------------GLT----------------  509 (587)
Q Consensus       470 L~gLF~YDIFwVF------gt~VMvtVA~~-~d~----Pikl~~p~~~-------------gl~----------------  509 (587)
                      |+|+|+|||||||      |||||++|||+ .|+    |+|+++|+..             |++                
T Consensus       154 L~~lf~YDif~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD  233 (298)
T PF04258_consen  154 LIGLFLYDIFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFD  233 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhh
Confidence            9999999999999      99999999999 898    9999998651             221                


Q ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHhhccCCceeEeeccccchHHHHHHHhhchHHHHhc
Q psy980          510 ---------QWFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALIN  565 (587)
Q Consensus       510 ---------~~~~~~~~Y~~GL~~T~~vm~~fk~aQPALLYLVP~~l~~~~~~A~~rgEl~~~w~  565 (587)
                               ||.++++||++||++|+++++.+|+||||||||||+|+++++++|+.|||++++||
T Consensus       234 ~~~~~~~~~Yf~~~~~~Y~~Gl~~t~~~~~~~~~~QPALlylvP~~l~~~~~~a~~r~el~~~w~  298 (298)
T PF04258_consen  234 KSRNKSRKPYFIASLIGYALGLLLTFVALHLFKHGQPALLYLVPCTLGSVLLVAWIRGELKDFWN  298 (298)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HhhccccchHHHHHHHHHHHHHHHHHHHHHHhCCCCCeehHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence                     34467899999999999999999999999999999999999999999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=100.00  E-value=5.6e-42  Score=345.94  Aligned_cols=207  Identities=40%  Similarity=0.643  Sum_probs=175.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhccccccCccCCcceEEeeccCCCccccccccccceeEEEEEeccchhHHHHHHHHHH
Q psy980            3 NLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSEALLVIFDYKFSSHDIVCFIVCSVFG   82 (587)
Q Consensus         3 n~ll~~Yf~~lGv~al~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~dl~~~~~s~~~~   82 (587)
                      |+.++.||++.|+.++...+.|.....                  . +                 ....+.......+.+
T Consensus        32 ~i~~~~~f~~~~~~~~~~~~~~~~~~~------------------~-~-----------------~~~~~~~~~~~~v~~   75 (249)
T smart00730       32 VIVLVIYFSSLGVLFLYSLLYPLEVFR------------------V-D-----------------YPTLLILLLNFAVVG   75 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H-h-----------------HHHHHHHHHHHHHHH
Confidence            788999999999999999988766533                  0 0                 012233333444667


Q ss_pred             hhhhccc-cchHHhHHHHHHHHHHHHhcccChhHHHHHHHHHHhhhheeeEecc----chhhhhcccCCCC-----eEEE
Q psy980           83 SWYLVKK-HWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGT----NVMVTVAKSFEAP-----IKLV  152 (587)
Q Consensus        83 ~~y~~~~-~WilnNilgi~~~i~~i~~l~l~s~k~g~iLL~gLf~YDIFwVFgt----sVMvtVA~~~d~P-----ikL~  152 (587)
                      +|+.++| ||+.||++|+++|+.+++.+++||+|++++||+++++||+||||+|    +|||+|||+.|.|     .++.
T Consensus        76 ~~~~~~~~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~~~~vMv~vA~~~~~~~~~~P~ll~  155 (249)
T smart00730       76 FWCIHRKGAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPGPLRVMVEVATGRDEPIKVFPALLY  155 (249)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCCCchHHhhHhccCCCCcccCChhhc
Confidence            7888887 9999999999999999999999999999999999999999999999    9999999998754     5555


Q ss_pred             eccccccc-CccCCccccccCCcchhhHHHHHHHHHhhhccCCCCccchhHhHHHHHHHHHHHHHHHHHhCCCcceehhh
Q psy980          153 FPQDLLEH-GVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYL  231 (587)
Q Consensus       153 ~P~~~~~~-~~~~~~~smLGLGDIViPGifIa~~lRFD~~~~~~~~~YF~~s~igY~lGL~~T~~vm~~~~~aQPALLYL  231 (587)
                      .|+...+. +.+++++++||+||||+||+++++|+|||.+. ++++.||.+|++||.+||+.|+++++.+|+|||||+|+
T Consensus       156 ~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~-~~~~~yf~~~~~ay~~GL~~t~~~l~~~~~aqPALlyl  234 (249)
T smart00730      156 VPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSV-RSDSNYFLACFVAYGIGLILTLVLLALFKKAQPALPYL  234 (249)
T ss_pred             ccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcc-cCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHH
Confidence            66532111 22457899999999999999999999999875 34678999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHH
Q psy980          232 VPACLGLPLLIIARI  246 (587)
Q Consensus       232 VP~~l~~~~l~A~~r  246 (587)
                      ||+++++.++.|+.|
T Consensus       235 vp~~l~~~~~~~~~r  249 (249)
T smart00730      235 VPFTLVFYLLTALLR  249 (249)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999875

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>KOG2442|consensus

Probab=100.00  E-value=1.1e-38  Score=338.80  Aligned_cols=213  Identities=30%  Similarity=0.496  Sum_probs=161.2

Q ss_pred             ceeeeeccCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCccCCccccccccCCCccccccCCCCCCCCCccccccc
Q psy980          325 PALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDG  404 (587)
Q Consensus       325 l~l~fKf~~~~~IN~lLt~YF~ilGv~AL~~~l~p~i~~l~p~~~p~~~~~~~~~~~~~~~~k~~~~f~~~~~~~~~~~~  404 (587)
                      |+++|+|.|  +.-.+++..|++.|+-+|.+|+++.+++.....-          +..    .+   .++...       
T Consensus       257 LvLlyfF~~--~~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~----------~~~----~~---~~~l~~-------  310 (541)
T KOG2442|consen  257 LVLLYFFYS--YLVYVLIIIFCIGGAQGLYNCLAALVHRLPYGAA----------RFP----TL---APRLGN-------  310 (541)
T ss_pred             HHHHHHHHH--HHHHHHhhheeecccchHHHHHHHHHhhhhhhcc----------ccc----cc---ccccCC-------
Confidence            677777744  5778999999999999999999999887532110          000    00   000000       


Q ss_pred             cccceeeEEEEecccchhhhhHHHhhhhhhhccccchHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhheeeEeee
Q psy980          405 SEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFGT  484 (587)
Q Consensus       405 ~e~~~~~~~~~f~~~~~~~~~~~~~~~~~y~~~~~Wil~Nilgi~f~i~~i~~l~l~s~k~g~iLL~gLF~YDIFwVFgt  484 (587)
                             .+++.-...++|+.+|+.+.++......|++||++|||+|++.++.+|+||+|+|++||+++|+|||||||+|
T Consensus       311 -------~~~~~l~l~~~Cia~aV~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFit  383 (541)
T KOG2442|consen  311 -------MSYRLLFLSILCIAVAVVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFIT  383 (541)
T ss_pred             -------hhHHHHHHHHhhhheeEEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeee
Confidence                   0111111233344343333333334457999999999999999999999999999999999999999999964


Q ss_pred             --------ceeehhhccCC-----CceeecccccC----------------------cc-----------------chhH
Q psy980          485 --------NVMVTVAKSFE-----APIKYVHESFK----------------------GL-----------------TQWF  512 (587)
Q Consensus       485 --------~VMvtVA~~~d-----~Pikl~~p~~~----------------------gl-----------------~~~~  512 (587)
                              |||++||+|.+     .|+-+-.|++.                      |+                 .||+
T Consensus       384 p~~t~~geSVMieVA~G~~s~~EkiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYfv  463 (541)
T KOG2442|consen  384 PFITKNGESVMIEVARGPSSTEEKIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYFV  463 (541)
T ss_pred             hhhccCCceEEEEEecCCCCCCCCcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEEe
Confidence                    89999999974     58766555421                      21                 2456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCceeEeeccccchHHHHHHHhhchHHHHhcccccc
Q psy980          513 SNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSE  570 (587)
Q Consensus       513 ~~~~~Y~~GL~~T~~vm~~fk~aQPALLYLVP~~l~~~~~~A~~rgEl~~~w~~~~~~  570 (587)
                      .+++||.+||++|++++.++|.|||||||||||+|++...+|++|||++++||+...|
T Consensus       464 ~~tvaYgiGLlvTfvaL~LM~~GQPALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~  521 (541)
T KOG2442|consen  464 WSTVAYGIGLLVTFVALVLMKGGQPALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQ  521 (541)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCceEEEEechHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            7899999999999999999999999999999999999999999999999999997654

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=99.97  E-value=4.9e-31  Score=266.57  Aligned_cols=181  Identities=39%  Similarity=0.624  Sum_probs=146.5

Q ss_pred             ceeeeeccCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCccCCccccccccCCCccccccCCCCCCCCCccccccc
Q psy980          325 PALLYLFFSKDMINLLLTGYFFLLGVLALCYLLSPVISPLVPAAIPNIPFHLKFDRGATNEEKKDGSFDRGATNEEKKDG  404 (587)
Q Consensus       325 l~l~fKf~~~~~IN~lLt~YF~ilGv~AL~~~l~p~i~~l~p~~~p~~~~~~~~~~~~~~~~k~~~~f~~~~~~~~~~~~  404 (587)
                      ++++||+..  +.+..+..||++.|+.++...+.+......              .                        
T Consensus        21 Ll~Ly~~~~--~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~--------------~------------------------   60 (249)
T smart00730       21 LVLLYKFFK--YLVIVLVIYFSSLGVLFLYSLLYPLEVFRV--------------D------------------------   60 (249)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------h------------------------
Confidence            567777754  348999999999999999999887533210              0                        


Q ss_pred             cccceeeEEEEecccchhhhhHHHhhhhhhhccc-cchHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhheeeEee
Q psy980          405 SEALLVIFDYKFSSHDIVCFIVCSVFGSWYLVKK-HWIANNLFGLAFAVNGIELLHLNNVMIGVILLCGLFIYDIFWVFG  483 (587)
Q Consensus       405 ~e~~~~~~~~~f~~~~~~~~~~~~~~~~~y~~~~-~Wil~Nilgi~f~i~~i~~l~l~s~k~g~iLL~gLF~YDIFwVFg  483 (587)
                                  ....+......++.++|+..+| ||+.||++|+++|+++++.+|+||+|++++||+++|+|||||||+
T Consensus        61 ------------~~~~~~~~~~~~v~~~~~~~~~~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~  128 (249)
T smart00730       61 ------------YPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFG  128 (249)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeec
Confidence                        0011223333445567888887 999999999999999999999999999999999999999999999


Q ss_pred             e----ceeehhhccCCCce-----eecccc--------------cCccc------------------------hhHHHHH
Q psy980          484 T----NVMVTVAKSFEAPI-----KYVHES--------------FKGLT------------------------QWFSNFF  516 (587)
Q Consensus       484 t----~VMvtVA~~~d~Pi-----kl~~p~--------------~~gl~------------------------~~~~~~~  516 (587)
                      |    +|||||||+.|.|+     ++..|+              +.|++                        ++..+++
T Consensus       129 t~~~~~vMv~vA~~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~~~~yf~~~~~  208 (249)
T smart00730      129 TPGPLRVMVEVATGRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACFV  208 (249)
T ss_pred             CCCCchHHhhHhccCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence            9    99999999998763     333342              12332                        2456789


Q ss_pred             HHHHHHHHHHHHHHhhccCCceeEeeccccchHHHHHHHhh
Q psy980          517 AWHLGLMATIFVMHVFKHAQPALLYLVPACLGLPLLVALVK  557 (587)
Q Consensus       517 ~Y~~GL~~T~~vm~~fk~aQPALLYLVP~~l~~~~~~A~~r  557 (587)
                      ||.+||+.|+++++.+|+|||||+|+||+++++.+++|+.|
T Consensus       209 ay~~GL~~t~~~l~~~~~aqPALlylvp~~l~~~~~~~~~r  249 (249)
T smart00730      209 AYGIGLILTLVLLALFKKAQPALPYLVPFTLVFYLLTALLR  249 (249)
T ss_pred             HHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999976

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function

Probab=99.54  E-value=8.5e-14  Score=142.21  Aligned_cols=173  Identities=23%  Similarity=0.308  Sum_probs=130.9

Q ss_pred             chhHHHHHHHHHHhhhhccccchHHhHHHHHHHH--HHHHhcccChhHHHHHHHHHHhhhheeeEeccchhhhhccc---
Q psy980           70 HDIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAV--NGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKS---  144 (587)
Q Consensus        70 ~dl~~~~~s~~~~~~y~~~~~WilnNilgi~~~i--~~i~~l~l~s~k~g~iLL~gLf~YDIFwVFgtsVMvtVA~~---  144 (587)
                      .+.++...++.+..+.+..+.|+..|+.|+..+.  .++-.+++ +.-.+.+||..+-+||..-||+|++|++.|++   
T Consensus        91 ~~~~a~~~ai~~~~~L~~ypEWYviD~~Gil~~aG~aaiFGISl-~~lpaiiLL~iLAVYDaISVYkTkHMltLAegv~d  169 (283)
T PF06550_consen   91 VNIIALILAIALTALLYKYPEWYVIDIAGILMGAGAAAIFGISL-GILPAIILLAILAVYDAISVYKTKHMLTLAEGVMD  169 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHHHHHHhhhc-cHHHHHHHHHHHHHhhhhheecchHHHHHHHHHhc
Confidence            4567888888888888899999999999999974  46677888 66677999999999999999999999999997   


Q ss_pred             CCCCeEEEecccccc----cCc------cCCccccccCCcchhhHHHHHHHHHhhhccCCCCccchhHhHHHHHHHHHHH
Q psy980          145 FEAPIKLVFPQDLLE----HGV------SANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMAT  214 (587)
Q Consensus       145 ~d~PikL~~P~~~~~----~~~------~~~~~smLGLGDIViPGifIa~~lRFD~~~~~~~~~YF~~s~igY~lGL~~T  214 (587)
                      .+.|+.+++|+....    .+.      ++|+-.++|+||.++|.++++-+..|...-.-..-.++   .++=.+|-.+.
T Consensus       170 ~klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~~~~~~~~lp---alga~~Gtl~g  246 (283)
T PF06550_consen  170 LKLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSAPILGGLNLP---ALGAMLGTLAG  246 (283)
T ss_pred             cCCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccccchhhhhHH---HHHHHHHHHHH
Confidence            589999999997531    111      12345699999999999999999999765211000111   13333444444


Q ss_pred             HHHHHH---hCCCcceehhhhhhhhHHHHHHHHHH
Q psy980          215 IFVMHV---FKHAQPALLYLVPACLGLPLLIIARI  246 (587)
Q Consensus       215 ~~vm~~---~~~aQPALLYLVP~~l~~~~l~A~~r  246 (587)
                      +.++.+   .+++||+|.||.-..+++-++-++..
T Consensus       247 l~vL~~~v~kgrp~aGLP~LN~GaI~Gflig~l~s  281 (283)
T PF06550_consen  247 LAVLLRFVMKGRPQAGLPFLNGGAIAGFLIGALAS  281 (283)
T ss_pred             HHHHHHHHHcCCCCCCCCccchhHHHHHHHHHHHc
Confidence            444444   58999999999888888877776643

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.32  E-value=3.5e-12  Score=126.82  Aligned_cols=161  Identities=24%  Similarity=0.361  Sum_probs=120.6

Q ss_pred             HHHHHHhhhhccccchHHhHHHHHHH--HHHHHhcccChhHHHHHHHHHHhhhheeeEeccchhhhhccc---CCCCeEE
Q psy980           77 VCSVFGSWYLVKKHWIANNLFGLAFA--VNGIELLHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKS---FEAPIKL  151 (587)
Q Consensus        77 ~s~~~~~~y~~~~~WilnNilgi~~~--i~~i~~l~l~s~k~g~iLL~gLf~YDIFwVFgtsVMvtVA~~---~d~PikL  151 (587)
                      +++.+....+.++.|+..|..|.+++  +.++-.+++ ....+..+|..+-+||..-|++|.+|++.|++   .|+|+.+
T Consensus        98 ~aI~~~~lL~~~peWyVid~ag~~la~Giaai~GIsf-gv~pavvlL~~lavYDaIsVYkT~HMIslA~~v~d~~lPmlf  176 (277)
T COG3389          98 LAIGLVYLLYKYPEWYVIDLAGFFLAVGIAAIFGISF-GVLPAVVLLIALAVYDAISVYKTRHMISLAEGVMDLDLPMLF  176 (277)
T ss_pred             HHHHHHHhhhhccceEEeehHHHHHHhhHHHhheeec-chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCceEE
Confidence            33333333446789999999999997  455566777 45567999999999999999999999999997   6999999


Q ss_pred             Eecccccc----cC---ccCCccccccCCcchhhHHHHHHHHHhhhccCCCCccchh--HhHHHHHHHHHHHHHHHHHhC
Q psy980          152 VFPQDLLE----HG---VSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFN--TAFLAYFLGLMATIFVMHVFK  222 (587)
Q Consensus       152 ~~P~~~~~----~~---~~~~~~smLGLGDIViPGifIa~~lRFD~~~~~~~~~YF~--~s~igY~lGL~~T~~vm~~~~  222 (587)
                      ++|+...-    .+   -.+++--|+|+||+++|.|+++-+.-|-.+    +..+|.  .++.|-.+|+.+-  -+..-+
T Consensus       177 viP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~s----~~l~f~~Lpal~GglvGl~vL--~~v~r~  250 (277)
T COG3389         177 VIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLIS----PILAFIVLPALAGGLVGLAVL--YFVNRG  250 (277)
T ss_pred             EeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhccC----CchhhhhHHHHhccHHHHHHH--HHHhcC
Confidence            99975421    11   134566799999999999999999888554    234444  3566667776654  344458


Q ss_pred             CCcceehhhhhhhhHHHHHHHH
Q psy980          223 HAQPALLYLVPACLGLPLLIIA  244 (587)
Q Consensus       223 ~aQPALLYLVP~~l~~~~l~A~  244 (587)
                      ++||.|.|+.-..+.+-++-+.
T Consensus       251 Rp~pGLP~lN~GaIaGflig~V  272 (277)
T COG3389         251 RPHPGLPFLNTGAIAGFLIGFV  272 (277)
T ss_pred             CCCCCCceeccchHHHHHHHHH
Confidence            9999999999887766655433

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function

Probab=97.04  E-value=0.0026  Score=66.19  Aligned_cols=138  Identities=24%  Similarity=0.394  Sum_probs=99.8

Q ss_pred             chhhhhHHHhhhhhhhccccchHHHHHHHHHHHHHHhh--cccCchHHHHHHHHHHHhhheeeEeeeceeehhhcc---C
Q psy980          420 DIVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIEL--LHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKS---F  494 (587)
Q Consensus       420 ~~~~~~~~~~~~~~y~~~~~Wil~Nilgi~f~i~~i~~--l~l~s~k~g~iLL~gLF~YDIFwVFgt~VMvtVA~~---~  494 (587)
                      +..+...+.++.++......|+..|+.|+.++...-..  +++ +.-.+.+||..|=+||-.=|++|.=|+|.|++   .
T Consensus        92 ~~~a~~~ai~~~~~L~~ypEWYviD~~Gil~~aG~aaiFGISl-~~lpaiiLL~iLAVYDaISVYkTkHMltLAegv~d~  170 (283)
T PF06550_consen   92 NIIALILAIALTALLYKYPEWYVIDIAGILMGAGAAAIFGISL-GILPAIILLAILAVYDAISVYKTKHMLTLAEGVMDL  170 (283)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHHHHHHhhhc-cHHHHHHHHHHHHHhhhhheecchHHHHHHHHHhcc
Confidence            44567777777777778889999999999998664333  444 45667899999999999999999999999998   4


Q ss_pred             CCceeeccccc-----------------------Cccch------------hHHH----------HHHHHHHHHHHHHHH
Q psy980          495 EAPIKYVHESF-----------------------KGLTQ------------WFSN----------FFAWHLGLMATIFVM  529 (587)
Q Consensus       495 d~Pikl~~p~~-----------------------~gl~~------------~~~~----------~~~Y~~GL~~T~~vm  529 (587)
                      +.|+-++-|+-                       -|+++            ++..          .++=.+|-++.+.++
T Consensus       171 klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~~~~~~~~lpalga~~Gtl~gl~vL  250 (283)
T PF06550_consen  171 KLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSAPILGGLNLPALGAMLGTLAGLAVL  250 (283)
T ss_pred             CCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence            68998877731                       12221            1100          123344555555555


Q ss_pred             Hh---hccCCceeEeeccccchHHHHHHHhhc
Q psy980          530 HV---FKHAQPALLYLVPACLGLPLLVALVKG  558 (587)
Q Consensus       530 ~~---fk~aQPALLYLVP~~l~~~~~~A~~rg  558 (587)
                      ..   .+++||.|=||--+.+++.++-++..|
T Consensus       251 ~~~v~kgrp~aGLP~LN~GaI~Gflig~l~sg  282 (283)
T PF06550_consen  251 LRFVMKGRPQAGLPFLNGGAIAGFLIGALASG  282 (283)
T ss_pred             HHHHHcCCCCCCCCccchhHHHHHHHHHHHcC
Confidence            54   599999999998888888777776554

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.51  E-value=0.21  Score=54.95  Aligned_cols=56  Identities=29%  Similarity=0.538  Sum_probs=45.2

Q ss_pred             cccccCCcchhhHHHHHHHHHh-hhccCCCCccchhHhHHHHHHHHHHHHHHHHHhCCCcceeh
Q psy980          167 FAMLGLGDIVVPGIFIALLLRF-DLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALL  229 (587)
Q Consensus       167 ~smLGLGDIViPGifIa~~lRF-D~~~~~~~~~YF~~s~igY~lGL~~T~~vm~~~~~aQPALL  229 (587)
                      -.-|||||-|+=+++++-+.++ |..       -..+|++|-.+||++|...+..+|++-|||.
T Consensus       325 ~~klGlGDFiFYs~Lvg~aa~~~~~~-------~~~~~~~ail~Gl~~Tl~~l~~~~~alPALP  381 (403)
T PF01080_consen  325 GIKLGLGDFIFYSVLVGRAAMYGDWN-------TVVACFVAILIGLCLTLLLLAIFRKALPALP  381 (403)
T ss_dssp             --SS-TTTHHHHHHHHHHHHHH-TTT-------THHHHHHHHHHHHHHHHHHHHHHT-S-SSSS
T ss_pred             ceeecchhHHHHHHHHhHHHhcCCHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence            3479999999999999988876 442       3568999999999999999999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.44  E-value=0.85  Score=46.85  Aligned_cols=80  Identities=23%  Similarity=0.376  Sum_probs=61.0

Q ss_pred             hhhHHHhhhhhhhccccchHHHHHHHHHHHHHHhh--cccCchHHHHHHHHHHHhhheeeEeeeceeehhhcc---CCCc
Q psy980          423 CFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIEL--LHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKS---FEAP  497 (587)
Q Consensus       423 ~~~~~~~~~~~y~~~~~Wil~Nilgi~f~i~~i~~--l~l~s~k~g~iLL~gLF~YDIFwVFgt~VMvtVA~~---~d~P  497 (587)
                      +...+..+....+.+..|..-|..|.+++...-..  +++. .-.+.++|..+=+||-.=|.+|.=|++.|++   .|.|
T Consensus        95 si~~aI~~~~lL~~~peWyVid~ag~~la~Giaai~GIsfg-v~pavvlL~~lavYDaIsVYkT~HMIslA~~v~d~~lP  173 (277)
T COG3389          95 SIGLAIGLVYLLYKYPEWYVIDLAGFFLAVGIAAIFGISFG-VLPAVVLLIALAVYDAISVYKTRHMISLAEGVMDLDLP  173 (277)
T ss_pred             HHHHHHHHHHhhhhccceEEeehHHHHHHhhHHHhheeecc-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence            44455554444445678999999999887654444  4443 4456789999999999999999999999998   5899


Q ss_pred             eeeccc
Q psy980          498 IKYVHE  503 (587)
Q Consensus       498 ikl~~p  503 (587)
                      +-++-|
T Consensus       174 mlfviP  179 (277)
T COG3389         174 MLFVIP  179 (277)
T ss_pred             eEEEee
Confidence            998877

>KOG2736|consensus

Probab=88.96  E-value=0.3  Score=52.98  Aligned_cols=66  Identities=29%  Similarity=0.486  Sum_probs=50.2

Q ss_pred             cccccCCcchhhHHHHHHHHHhhhccCCCCccchhHhHHHHHHHHHHHHHHHHHhCCCcceehhhhhhhhHHHH
Q psy980          167 FAMLGLGDIVVPGIFIALLLRFDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLYLVPACLGLPL  240 (587)
Q Consensus       167 ~smLGLGDIViPGifIa~~lRFD~~~~~~~~~YF~~s~igY~lGL~~T~~vm~~~~~aQPALLYLVP~~l~~~~  240 (587)
                      ---||+||-|+=.+++.-+.-+|..      .==++|++|-.+||++|...+.++|++-|||.  .|.+.|.++
T Consensus       319 ~ikLGlGDFIFYSvLvGkAa~~~d~------~TviAC~vaIL~GL~~TL~llsv~~kALPALP--isI~~G~iF  384 (406)
T KOG2736|consen  319 GIKLGLGDFIFYSVLVGKAAAYGDL------NTVIACFVAILIGLCLTLLLLSVFKKALPALP--ISITFGLIF  384 (406)
T ss_pred             ceeeccCceEEEEeeccchhhcCCh------HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCc--hHHHHHHHH
Confidence            4479999999877777766655521      11358999999999999999999999999998  344444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	587
4hyg_A	301	Putative uncharacterized protein; protease, membra	99.93
4hyg_A	301	Putative uncharacterized protein; protease, membra	99.61
2kr6_A	176	Presenilin-1; protease, alternative splicing, alzh	95.63

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A

Probab=99.93  E-value=6.2e-27  Score=236.75  Aligned_cols=175  Identities=21%  Similarity=0.267  Sum_probs=129.3

Q ss_pred             hHHHHHHHHHHhhhhccccchHHhHHHHHHHHHHHHh--cccChhHHHHHHHHHHhhhheeeEeccchhhhhccc---CC
Q psy980           72 IVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIEL--LHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKS---FE  146 (587)
Q Consensus        72 l~~~~~s~~~~~~y~~~~~WilnNilgi~~~i~~i~~--l~l~s~k~g~iLL~gLf~YDIFwVFgtsVMvtVA~~---~d  146 (587)
                      .++.+.|..+..+++.+++|+.+|+.|+++|..+...  ++++.+ .+.+||++|.+||.+|||+|++|+++|++   .|
T Consensus       105 ~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAegvmdlk  183 (301)
T 4hyg_A          105 AGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEGVLETK  183 (301)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHhhhccC
Confidence            4666778888889999999999999999999776655  566888 88999999999999999999999999998   79


Q ss_pred             CCeEEEecccccc----cC-----ccCCccccccCCcchhhHHHHHHHHHhhhccCC---CCccchhHhHHHHHHHHHHH
Q psy980          147 APIKLVFPQDLLE----HG-----VSANNFAMLGLGDIVVPGIFIALLLRFDLSLNR---RSNTYFNTAFLAYFLGLMAT  214 (587)
Q Consensus       147 ~PikL~~P~~~~~----~~-----~~~~~~smLGLGDIViPGifIa~~lRFD~~~~~---~~~~YF~~s~igY~lGL~~T  214 (587)
                      .|+++++|+....    .+     -.+++..++|+||+|+|+++++.+.|||.+...   -+-+ +..+++|+.+|+.++
T Consensus       184 ~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~Gt~~Gl~vL  262 (301)
T 4hyg_A          184 APIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVGSLVGLAVL  262 (301)
T ss_dssp             ----------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHHHHHHHHHH
Confidence            9999999985321    11     134678899999999999999999999975331   0124 789999999999998


Q ss_pred             HH-HHHHhCCCcceehhhhhhhhHHHHHHHHHHHhhh
Q psy980          215 IF-VMHVFKHAQPALLYLVPACLGLPLLIIARISLMD  250 (587)
Q Consensus       215 ~~-vm~~~~~aQPALLYLVP~~l~~~~l~A~~r~e~~  250 (587)
                      +. ++  .+++||+|.||.+.++++.++.++.+||++
T Consensus       263 l~~V~--~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          263 LYFVN--KGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             HHHHT--SSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHH--cCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence            66 44  899999999999999999999999998864

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A

Probab=99.61  E-value=6.5e-17  Score=163.95  Aligned_cols=137  Identities=22%  Similarity=0.300  Sum_probs=103.4

Q ss_pred             hhhhHHHhhhhhhhccccchHHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHHhhheeeEeeeceeehhhcc---CCC
Q psy980          422 VCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELL--HLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKS---FEA  496 (587)
Q Consensus       422 ~~~~~~~~~~~~y~~~~~Wil~Nilgi~f~i~~i~~l--~l~s~k~g~iLL~gLF~YDIFwVFgt~VMvtVA~~---~d~  496 (587)
                      ++.+.+.+++.+++.+++|+..|+.|+++|..+.+..  ++..+ .+.+||++|++||.+|||+|+.|+|+|++   .|.
T Consensus       106 ~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAegvmdlk~  184 (301)
T 4hyg_A          106 GTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEGVLETKA  184 (301)
T ss_dssp             HHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred             HHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHhhhccCC
Confidence            5566777888889999999999999999999887764  55888 99999999999999999999999999999   789


Q ss_pred             ceeecccc-----c---------C--------ccch------------h---------------HHHHHHHHHHHHHHHH
Q psy980          497 PIKYVHES-----F---------K--------GLTQ------------W---------------FSNFFAWHLGLMATIF  527 (587)
Q Consensus       497 Pikl~~p~-----~---------~--------gl~~------------~---------------~~~~~~Y~~GL~~T~~  527 (587)
                      |++++.|+     +         +        |+++            +               ...++||.+||.+++.
T Consensus       185 PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lPalgA~~Gt~~Gl~vLl~  264 (301)
T 4hyg_A          185 PIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAPTLGAMVGSLVGLAVLLY  264 (301)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCSCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccchHHHHHHHHHHHHHHHHH
Confidence            99999984     1         0        1111            0               1236889999999876


Q ss_pred             -HHHhhccCCceeEeeccccchHHHHHHHhhchHH
Q psy980          528 -VMHVFKHAQPALLYLVPACLGLPLLVALVKGDLS  561 (587)
Q Consensus       528 -vm~~fk~aQPALLYLVP~~l~~~~~~A~~rgEl~  561 (587)
                       +|  .+++||.|.||.++++++.++.|+.+||+.
T Consensus       265 ~V~--~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          265 FVN--KGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             HHT--SSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHH--cCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence             34  899999999999999999999999999986

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=95.63  E-value=0.011  Score=56.41  Aligned_cols=56  Identities=30%  Similarity=0.497  Sum_probs=48.6

Q ss_pred             ccccCCcchhhHHHHHHHH--H-hhhccCCCCccchhHhHHHHHHHHHHHHHHHHHhCCCcceehh
Q psy980          168 AMLGLGDIVVPGIFIALLL--R-FDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLY  230 (587)
Q Consensus       168 smLGLGDIViPGifIa~~l--R-FD~~~~~~~~~YF~~s~igY~lGL~~T~~vm~~~~~aQPALLY  230 (587)
                      .-|||||-|+=+++++-+.  + .|..       =..+|++|..+||++|...+.+++++-|||..
T Consensus        88 ikLGLGDFIFYSvLVgkAa~~~~~d~~-------t~~ac~vaIL~GL~~TL~lLa~~~~aLPALPi  146 (176)
T 2kr6_A           88 VKLGLGDFIFYSVLVGKASATASGDWN-------TTIACFVAILIGLCLTLLLLAIFKKALPALPI  146 (176)
T ss_dssp             CSSCTTTHHHHHHHHHHHHHHSCCTTT-------THHHHHHHHHHHHHHHHHHHHHHTCSCSSSSS
T ss_pred             ccccccCeeehHHHHHHHHHhhccCHH-------HHHHHHHHHHHHHHHHHHHHhhhcccCCCCcH
Confidence            5799999999999999886  4 2442       36789999999999999999999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00