Psyllid ID: psy9810

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISIVG
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHc
cccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEEEEEEccccHHHHHHHHHHccccEEEEEcEEccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcc
hwqiplgrrfRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVakvqdnvsdvttgQARLTFWDNAIDklytdqvpahpvVQELNKVISIVG
hwqiplgrrfrslkLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTdqvpahpvvqELNKVISIVG
HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISIVG
***IPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISI**
HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVIS***
HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISIVG
*WQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISIVG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISIVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query154 2.2.26 [Sep-21-2011]
O88533480 Aromatic-L-amino-acid dec yes N/A 0.766 0.245 0.477 4e-25
P20711480 Aromatic-L-amino-acid dec no N/A 0.454 0.145 0.685 6e-24
P14173480 Aromatic-L-amino-acid dec yes N/A 0.454 0.145 0.685 7e-24
P48861508 Aromatic-L-amino-acid dec N/A N/A 0.454 0.137 0.728 1e-23
P22781480 Aromatic-L-amino-acid dec yes N/A 0.454 0.145 0.671 2e-23
P27718487 Aromatic-L-amino-acid dec yes N/A 0.675 0.213 0.495 6e-23
P80041486 Aromatic-L-amino-acid dec yes N/A 0.448 0.141 0.666 6e-22
O96567510 Aromatic-L-amino-acid dec N/A N/A 0.435 0.131 0.656 3e-21
P05031510 Aromatic-L-amino-acid dec yes N/A 0.435 0.131 0.656 3e-21
Q7XHL3497 Tyrosine decarboxylase 1 yes N/A 0.636 0.197 0.509 2e-20
>sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2 SV=1 Back     alignment and function desciption
 Score =  113 bits (283), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 14/132 (10%)

Query: 1   HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
           HWQIPLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE LVR D RFE+  EV++G
Sbjct: 348 HWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVELSHEFESLVRQDPRFEICTEVILG 407

Query: 61  LVCFRLKTA----KVGLRKFDYENFLCTLLLPKALQNASFVIR----AFNIEVAKVQ--- 109
           LVCFRLK +    +  L++ +    +   L+P  L++  FV+R    A  +E A VQ   
Sbjct: 408 LVCFRLKGSNELNETLLQRINSAKKI--HLVPCRLRD-KFVLRFAVCARTVESAHVQLAW 464

Query: 110 DNVSDVTTGQAR 121
           +++SD+ +   R
Sbjct: 465 EHISDLASSVLR 476
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8
>sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2 Back     alignment and function description
>sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1 Back     alignment and function description
>sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1 Back     alignment and function description
>sp|P22781|DDC_CAVPO Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2 SV=1 Back     alignment and function description
>sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2 Back     alignment and function description
>sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2 Back     alignment and function description
>sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2 Back     alignment and function description
>sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4 Back     alignment and function description
>sp|Q7XHL3|TYDC1_ORYSJ Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=Os07g0437500 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query154
291230852 481 PREDICTED: aromatic-L-amino-acid decarbo 0.435 0.139 0.805 2e-25
260787633 489 hypothetical protein BRAFLDRAFT_99569 [B 0.454 0.143 0.771 6e-25
260783836 489 hypothetical protein BRAFLDRAFT_102098 [ 0.454 0.143 0.757 2e-24
348512489 480 PREDICTED: aromatic-L-amino-acid decarbo 0.435 0.139 0.731 6e-24
260787204 480 hypothetical protein BRAFLDRAFT_61616 [B 0.435 0.139 0.805 7e-24
390362349 440 PREDICTED: aromatic-L-amino-acid decarbo 0.448 0.156 0.753 8e-24
242011192 477 Aromatic-L-amino-acid decarboxylase, put 0.435 0.140 0.791 1e-23
72164945 486 PREDICTED: aromatic-L-amino-acid decarbo 0.448 0.141 0.739 1e-23
327275167 480 PREDICTED: aromatic-L-amino-acid decarbo 0.681 0.218 0.559 2e-23
22094149 480 aromatic-L-amino-acid decarboxylase [Mus 0.766 0.245 0.477 2e-23
>gi|291230852|ref|XP_002735383.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 59/67 (88%)

Query: 1   HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
           HWQIPLGRRFRSLKLWFVLRL GVKYLQEYIR  + LA EFE LV+SD RFE++ EV+MG
Sbjct: 347 HWQIPLGRRFRSLKLWFVLRLFGVKYLQEYIRTHVKLAHEFEALVKSDPRFEIVTEVIMG 406

Query: 61  LVCFRLK 67
           LVCFRLK
Sbjct: 407 LVCFRLK 413

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Order:

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota
>gi|260787633|ref|XP_002588857.1| hypothetical protein BRAFLDRAFT_99569 [Branchiostoma floridae] gi|229274027|gb|EEN44868.1| hypothetical protein BRAFLDRAFT_99569 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|260783836|ref|XP_002586977.1| hypothetical protein BRAFLDRAFT_102098 [Branchiostoma floridae] gi|229272110|gb|EEN42988.1| hypothetical protein BRAFLDRAFT_102098 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|348512489|ref|XP_003443775.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|260787204|ref|XP_002588644.1| hypothetical protein BRAFLDRAFT_61616 [Branchiostoma floridae] gi|229273811|gb|EEN44655.1| hypothetical protein BRAFLDRAFT_61616 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|390362349|ref|XP_001197373.2| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|242011192|ref|XP_002426339.1| Aromatic-L-amino-acid decarboxylase, putative [Pediculus humanus corporis] gi|212510416|gb|EEB13601.1| Aromatic-L-amino-acid decarboxylase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|72164945|ref|XP_798399.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|327275167|ref|XP_003222345.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|22094149|ref|NP_057881.1| aromatic-L-amino-acid decarboxylase [Mus musculus] gi|299522784|ref|NP_001177377.1| aromatic-L-amino-acid decarboxylase [Mus musculus] gi|6685369|sp|O88533.1|DDC_MOUSE RecName: Full=Aromatic-L-amino-acid decarboxylase; Short=AADC; AltName: Full=DOPA decarboxylase; Short=DDC gi|3288845|gb|AAC25566.1| aromatic-L-amino-acid decarboxylase [Mus musculus] gi|74225955|dbj|BAE28750.1| unnamed protein product [Mus musculus] gi|157170382|gb|AAI52725.1| Dopa decarboxylase [synthetic construct] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query154
UNIPROTKB|C9IYA0387 DDC "Aromatic-L-amino-acid dec 0.701 0.279 0.530 6.1e-23
UNIPROTKB|H7BZF7361 DDC "Aromatic-L-amino-acid dec 0.701 0.299 0.530 6.1e-23
UNIPROTKB|E7EU95402 DDC "Aromatic-L-amino-acid dec 0.701 0.268 0.530 7.7e-23
MGI|MGI:94876480 Ddc "dopa decarboxylase" [Mus 0.779 0.25 0.484 1e-22
UNIPROTKB|P20711480 DDC "Aromatic-L-amino-acid dec 0.701 0.225 0.530 2.2e-22
ZFIN|ZDB-GENE-040426-2656480 ddc "dopa decarboxylase" [Dani 0.435 0.139 0.716 2.9e-22
RGD|2494480 Ddc "dopa decarboxylase (aroma 0.435 0.139 0.716 4.7e-22
UNIPROTKB|P27718487 DDC "Aromatic-L-amino-acid dec 0.701 0.221 0.504 1.1e-21
UNIPROTKB|F1PFV0480 DDC "Uncharacterized protein" 0.701 0.225 0.513 1.3e-21
UNIPROTKB|E1BV90485 DDC "Uncharacterized protein" 0.435 0.138 0.701 3.8e-21
UNIPROTKB|C9IYA0 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 61/115 (53%), Positives = 76/115 (66%)

Query:     1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
             HWQIPLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE LVR D RFE+  EV++G
Sbjct:   255 HWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILG 314

Query:    61 LVCFRLKTA-KVGLRKFDYENFLCTL-LLPKALQNASFVIR----AFNIEVAKVQ 109
             LVCFRLK + KV        N    + L+P  L++  FV+R    +  +E A VQ
Sbjct:   315 LVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRD-KFVLRFAICSRTVESAHVQ 368
GO:0006520 "cellular amino acid metabolic process" evidence=IEA
GO:0016831 "carboxy-lyase activity" evidence=IEA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
UNIPROTKB|H7BZF7 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EU95 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:94876 Ddc "dopa decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P20711 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2656 ddc "dopa decarboxylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2494 Ddc "dopa decarboxylase (aromatic L-amino acid decarboxylase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P27718 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFV0 DDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV90 DDC "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P22781DDC_CAVPO4, ., 1, ., 1, ., 2, 80.67140.45450.1458yesN/A
P14173DDC_RAT4, ., 1, ., 1, ., 2, 80.68570.45450.1458yesN/A
P80041DDC_PIG4, ., 1, ., 1, ., 2, 80.66660.44800.1419yesN/A
Q7XHL3TYDC1_ORYSJ4, ., 1, ., 1, ., 2, 50.50940.63630.1971yesN/A
P05031DDC_DROME4, ., 1, ., 1, ., 2, 80.65670.43500.1313yesN/A
Q8RY79TYDC1_ARATH4, ., 1, ., 1, ., 2, 50.58220.51290.1612yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
PLN02880490 PLN02880, PLN02880, tyrosine decarboxylase 6e-29
pfam00282373 pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca 5e-28
PLN02590539 PLN02590, PLN02590, probable tyrosine decarboxylas 1e-18
cd06450345 cd06450, DOPA_deC_like, DOPA decarboxylase family 1e-15
pfam00494 262 pfam00494, SQS_PSY, Squalene/phytoene synthase 1e-11
COG0076460 COG0076, GadB, Glutamate decarboxylase and related 2e-07
TIGR03465 266 TIGR03465, HpnD, squalene synthase HpnD 5e-06
COG1562 288 COG1562, ERG9, Phytoene/squalene synthetase [Lipid 0.004
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase Back     alignment and domain information 
 Score =  109 bits (275), Expect = 6e-29
 Identities = 47/65 (72%), Positives = 50/65 (76%)

Query: 2   WQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGL 61
           WQIPLGRRFRSLKLW VLRL GV+ LQ YIR  I LAKEFEQLV  D RFEV+   +  L
Sbjct: 353 WQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSL 412

Query: 62  VCFRL 66
           VCFRL
Sbjct: 413 VCFRL 417

Length = 490
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain Back     alignment and domain information
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase Back     alignment and domain information
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family Back     alignment and domain information
>gnl|CDD|215948 pfam00494, SQS_PSY, Squalene/phytoene synthase Back     alignment and domain information
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|163278 TIGR03465, HpnD, squalene synthase HpnD Back     alignment and domain information
>gnl|CDD|224478 COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 154
PLN02590539 probable tyrosine decarboxylase 99.84
KOG0629|consensus510 99.82
PF00282373 Pyridoxal_deC: Pyridoxal-dependent decarboxylase c 99.77
PLN02880490 tyrosine decarboxylase 99.74
KOG0628|consensus511 99.67
TIGR03799522 NOD_PanD_pyr putative pyridoxal-dependent aspartat 99.65
cd00683 265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 99.5
TIGR03811608 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu 99.5
TIGR01788431 Glu-decarb-GAD glutamate decarboxylase. This model 99.46
PLN03032374 serine decarboxylase; Provisional 99.46
TIGR03465 266 HpnD squalene synthase HpnD. The genes of this fam 99.45
PLN02632 334 phytoene synthase 99.41
COG0076460 GadB Glutamate decarboxylase and related PLP-depen 99.41
PF00494 267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 99.38
PLN02263470 serine decarboxylase 99.37
KOG4411|consensus 292 99.37
TIGR03464 266 HpnC squalene synthase HpnC. This family of genes 99.36
PRK02769380 histidine decarboxylase; Provisional 99.23
COG1562 288 ERG9 Phytoene/squalene synthetase [Lipid metabolis 99.06
cd06450345 DOPA_deC_like DOPA decarboxylase family. This fami 98.23
TIGR00461939 gcvP glycine dehydrogenase (decarboxylating). This 97.78
TIGR01559 336 squal_synth farnesyl-diphosphate farnesyltransfera 97.72
KOG1383|consensus491 97.31
TIGR03812373 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe 97.24
PRK13520371 L-tyrosine decarboxylase; Provisional 97.24
KOG0630|consensus 838 96.6
PRK04366481 glycine dehydrogenase subunit 2; Validated 96.32
cd06453373 SufS_like Cysteine desulfurase (SufS)-like. This f 95.73
PRK05367954 glycine dehydrogenase; Provisional 95.63
TIGR01977376 am_tr_V_EF2568 cysteine desulfurase family protein 94.99
PRK00451447 glycine dehydrogenase subunit 1; Validated 94.85
TIGR01979403 sufS cysteine desulfurases, SufS subfamily. This m 94.83
TIGR03531444 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr 94.8
TIGR00461 939 gcvP glycine dehydrogenase (decarboxylating). This 94.54
cd00613398 GDC-P Glycine cleavage system P-protein, alpha- an 94.2
PRK10874401 cysteine sulfinate desulfinase; Provisional 93.93
TIGR03392398 FeS_syn_CsdA cysteine desulfurase, catalytic subun 93.36
PLN02855424 Bifunctional selenocysteine lyase/cysteine desulfu 92.35
PRK05367 954 glycine dehydrogenase; Provisional 92.19
PF02347429 GDC-P: Glycine cleavage system P-protein; InterPro 91.71
COG0403450 GcvP Glycine cleavage system protein P (pyridoxal- 91.65
PRK09295406 bifunctional cysteine desulfurase/selenocysteine l 91.64
COG0520405 csdA Selenocysteine lyase/Cysteine desulfurase [Po 90.71
PRK12566 954 glycine dehydrogenase; Provisional 90.6
PLN02414 993 glycine dehydrogenase (decarboxylating) 90.43
PF00266371 Aminotran_5: Aminotransferase class-V; InterPro: I 87.05
COG2008342 GLY1 Threonine aldolase [Amino acid transport and 85.82
COG1003496 GcvP Glycine cleavage system protein P (pyridoxal- 85.37
PRK12462364 phosphoserine aminotransferase; Provisional 84.23
cd06502338 TA_like Low-specificity threonine aldolase (TA). T 82.98
PLN02452365 phosphoserine transaminase 82.25
TIGR01976397 am_tr_V_VC1184 cysteine desulfurase family protein 82.25
cd00616352 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa 81.54
PRK07269364 cystathionine gamma-synthase; Reviewed 81.35
PRK08247366 cystathionine gamma-synthase; Reviewed 80.99
cd06452361 SepCysS Sep-tRNA:Cys-tRNA synthase. This family be 80.98
COG2873426 MET17 O-acetylhomoserine sulfhydrylase [Amino acid 80.98
PLN02414993 glycine dehydrogenase (decarboxylating) 80.93
TIGR01364349 serC_1 phosphoserine aminotransferase. This model 80.3
>PLN02590 probable tyrosine decarboxylase Back     alignment and domain information 
Probab=99.84  E-value=4.1e-21  Score=163.18  Aligned_cols=69  Identities=54%  Similarity=0.973  Sum_probs=67.3

Q ss_pred             CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccc
Q psy9810           1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTA   69 (154)
Q Consensus         1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~   69 (154)
                      ||++||||||||||+|++|+.+|.+||+++|+++|++|++|++.|+++|+||++.+|++++|||||.|+
T Consensus       400 d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~  468 (539)
T PLN02590        400 DWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPV  468 (539)
T ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCC
Confidence            589999999999999999999999999999999999999999999999999999999999999999884

>KOG0629|consensus Back     alignment and domain information
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PLN02880 tyrosine decarboxylase Back     alignment and domain information
>KOG0628|consensus Back     alignment and domain information
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type Back     alignment and domain information
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase Back     alignment and domain information
>PLN03032 serine decarboxylase; Provisional Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>PLN02263 serine decarboxylase Back     alignment and domain information
>KOG4411|consensus Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>PRK02769 histidine decarboxylase; Provisional Back     alignment and domain information
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism] Back     alignment and domain information
>cd06450 DOPA_deC_like DOPA decarboxylase family Back     alignment and domain information
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating) Back     alignment and domain information
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase Back     alignment and domain information
>KOG1383|consensus Back     alignment and domain information
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA Back     alignment and domain information
>PRK13520 L-tyrosine decarboxylase; Provisional Back     alignment and domain information
>KOG0630|consensus Back     alignment and domain information
>PRK04366 glycine dehydrogenase subunit 2; Validated Back     alignment and domain information
>cd06453 SufS_like Cysteine desulfurase (SufS)-like Back     alignment and domain information
>PRK05367 glycine dehydrogenase; Provisional Back     alignment and domain information
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein Back     alignment and domain information
>PRK00451 glycine dehydrogenase subunit 1; Validated Back     alignment and domain information
>TIGR01979 sufS cysteine desulfurases, SufS subfamily Back     alignment and domain information
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase Back     alignment and domain information
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating) Back     alignment and domain information
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits Back     alignment and domain information
>PRK10874 cysteine sulfinate desulfinase; Provisional Back     alignment and domain information
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA Back     alignment and domain information
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase Back     alignment and domain information
>PRK05367 glycine dehydrogenase; Provisional Back     alignment and domain information
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 Back     alignment and domain information
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated Back     alignment and domain information
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12566 glycine dehydrogenase; Provisional Back     alignment and domain information
>PLN02414 glycine dehydrogenase (decarboxylating) Back     alignment and domain information
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue Back     alignment and domain information
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12462 phosphoserine aminotransferase; Provisional Back     alignment and domain information
>cd06502 TA_like Low-specificity threonine aldolase (TA) Back     alignment and domain information
>PLN02452 phosphoserine transaminase Back     alignment and domain information
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily Back     alignment and domain information
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) Back     alignment and domain information
>PRK07269 cystathionine gamma-synthase; Reviewed Back     alignment and domain information
>PRK08247 cystathionine gamma-synthase; Reviewed Back     alignment and domain information
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase Back     alignment and domain information
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02414 glycine dehydrogenase (decarboxylating) Back     alignment and domain information
>TIGR01364 serC_1 phosphoserine aminotransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
3rch_A480 Crystal Structure Of Human Aromatic L-Amino Acid De 5e-25
3rbf_A480 Crystal Structure Of Human Aromatic L-Amino Acid De 6e-25
1js3_A486 Crystal Structure Of Dopa Decarboxylase In Complex 6e-23
3k40_A475 Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl 3e-22
4e1o_A481 Human Histidine Decarboxylase Complex With Histidin 5e-18
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 56/70 (80%)
Query: 1   HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
           HWQIPLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE LVR D RFE+  EV++G
Sbjct: 348 HWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILG 407
Query: 61  LVCFRLKTAK 70
           LVCFRLK + 
Sbjct: 408 LVCFRLKGSN 417
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480 Back     alignment and structure
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486 Back     alignment and structure
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475 Back     alignment and structure
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
3k40_A475 Aromatic-L-amino-acid decarboxylase; PLP dependent 1e-32
4e1o_A481 HDC, histidine decarboxylase; lyase; HET: PLP PVH; 2e-32
1js3_A486 DDC;, DOPA decarboxylase; carbidopa, parkinson'S d 2e-32
2qma_A497 Diaminobutyrate-pyruvate transaminase and L-2,4- d 2e-30
2jis_A515 Cysteine sulfinic acid decarboxylase; pyridoxal ph 3e-29
2okj_A504 Glutamate decarboxylase 1; PLP-dependent decarboxy 2e-28
3mc6_A497 Sphingosine-1-phosphate lyase; carboxy-lyase activ 1e-06
3mad_A514 Sphingosine-1-phosphate lyase; carboxy-lyase activ 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
2z67_A456 O-phosphoseryl-tRNA(SEC) selenium transferase; sel 1e-04
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 Back     alignment and structure
 Score =  119 bits (299), Expect = 1e-32
 Identities = 44/67 (65%), Positives = 53/67 (79%)

Query: 1   HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
           HWQIPLGRRFR+LKLWFVLRL GV+ LQ +IR+  + AK+F  L  +D RFE+  E+ MG
Sbjct: 345 HWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMG 404

Query: 61  LVCFRLK 67
           LVCFRLK
Sbjct: 405 LVCFRLK 411
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 Back     alignment and structure
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 Back     alignment and structure
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 Back     alignment and structure
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 Back     alignment and structure
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 Back     alignment and structure
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 Back     alignment and structure
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query154
3vp6_A511 Glutamate decarboxylase 1; catalytic loop SWAP, ly 99.42
3acx_A 293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 99.36
3k40_A475 Aromatic-L-amino-acid decarboxylase; PLP dependent 99.32
4e1o_A481 HDC, histidine decarboxylase; lyase; HET: PLP PVH; 99.3
4hd1_A 294 Squalene synthase HPNC; MCSG, structural genomics, 99.28
2jis_A515 Cysteine sulfinic acid decarboxylase; pyridoxal ph 99.2
2qma_A497 Diaminobutyrate-pyruvate transaminase and L-2,4- d 99.2
2okj_A504 Glutamate decarboxylase 1; PLP-dependent decarboxy 99.2
1js3_A486 DDC;, DOPA decarboxylase; carbidopa, parkinson'S d 99.15
2dgk_A452 GAD-beta, GADB, glutamate decarboxylase beta; gadb 98.75
3hbx_A502 GAD 1, glutamate decarboxylase 1; calmodulin-bindi 98.63
3vj8_A 343 Squalene synthase; farnesyl-diphosphate farnesyltr 98.49
3mc6_A497 Sphingosine-1-phosphate lyase; carboxy-lyase activ 97.67
3hl2_A501 O-phosphoseryl-tRNA(SEC) selenium transferase; sel 97.38
3bc8_A450 O-phosphoseryl-tRNA(SEC) selenium transferase; dis 97.37
3mad_A514 Sphingosine-1-phosphate lyase; carboxy-lyase activ 97.1
2z67_A456 O-phosphoseryl-tRNA(SEC) selenium transferase; sel 96.58
1wyu_A438 Glycine dehydrogenase (decarboxylating) subunit 1; 96.24
3f9t_A397 TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L 95.98
3ffr_A362 Phosphoserine aminotransferase SERC; structural ge 91.53
1t3i_A420 Probable cysteine desulfurase; PLP-binding enzyme, 91.12
3e9k_A465 Kynureninase; kynurenine-L-hydrolase, kynurenine h 90.63
2fyf_A398 PSAT, phosphoserine aminotransferase; PLP-dependen 90.14
3ri6_A430 O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate 89.01
1kmj_A406 Selenocysteine lyase; persulfide perselenide NIFS 87.39
1wyu_B474 Glycine dehydrogenase subunit 2 (P-protein); alpha 87.08
4hvk_A382 Probable cysteine desulfurase 2; transferase and I 86.78
2ctz_A421 O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac 86.21
1elu_A390 L-cysteine/L-cystine C-S lyase; FES cluster biosyn 85.64
3zrp_A384 Serine-pyruvate aminotransferase (AGXT); HET: PLP; 85.49
2yrr_A353 Aminotransferase, class V; structural genomics, NP 84.43
3isl_A416 Purine catabolism protein PUCG; pyridoxalphosphate 83.27
3e77_A377 Phosphoserine aminotransferase; SERC, PLP, structu 83.08
4eb5_A382 Probable cysteine desulfurase 2; scaffold, transfe 82.62
1v72_A356 Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 82.32
2cb1_A412 O-acetyl homoserine sulfhydrylase; PLP enzyme, lya 81.61
3nmy_A400 Xometc, cystathionine gamma-lyase-like protein; Cy 81.4
1qz9_A416 Kynureninase; kynurenine, tryptophan, PLP, vitamin 80.99
3nnk_A411 Ureidoglycine-glyoxylate aminotransferase; PLP-dep 80.08
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* Back     alignment and structure
Probab=99.42  E-value=3.4e-13  Score=112.93  Aligned_cols=134  Identities=16%  Similarity=0.212  Sum_probs=91.2

Q ss_pred             CCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc--ccceeeEEEEeccccccccccchh
Q psy9810           2 WQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY--EVLMGLVCFRLKTAKVGLRKFDYE   79 (154)
Q Consensus         2 ~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~--~p~l~~v~Fr~~~~~~~~~~~~~~   79 (154)
                      +++++||+++++++|++|+.+|.+|+++++++.+++|+++.+.|++.|+|+++.  +|++++|||||.|........+..
T Consensus       362 ~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~  441 (511)
T 3vp6_A          362 KAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQ  441 (511)
T ss_dssp             GSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHH
T ss_pred             CCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchh
Confidence            689999999999999999999999999999999999999999999999999998  799999999998864211101111


Q ss_pred             hhhhhhcCchhhhhHHHHHHHHHhhhhh-------hcccCCChHHHHHHHHHHHHHHHHHhCC
Q psy9810          80 NFLCTLLLPKALQNASFVIRAFNIEVAK-------VQDNVSDVTTGQARLTFWDNAIDKLYTD  135 (154)
Q Consensus        80 ~~l~~~~lp~~~r~~~~al~a~~~~~~~-------i~d~~~~p~~~~~rL~~w~~~i~~~~~g  135 (154)
                      ..-.....+...++.+..-+.++.....       ++-....+......++...+.|.++.++
T Consensus       442 ~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~  504 (511)
T 3vp6_A          442 RREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD  504 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            1001111122233333222222222111       2222235666777888888888888776
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 Back     alignment and structure
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Back     alignment and structure
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Back     alignment and structure
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Back     alignment and structure
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Back     alignment and structure
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Back     alignment and structure
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Back     alignment and structure
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* Back     alignment and structure
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Back     alignment and structure
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Back     alignment and structure
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Back     alignment and structure
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Back     alignment and structure
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Back     alignment and structure
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Back     alignment and structure
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Back     alignment and structure
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Back     alignment and structure
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* Back     alignment and structure
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Back     alignment and structure
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Back     alignment and structure
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Back     alignment and structure
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* Back     alignment and structure
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Back     alignment and structure
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Back     alignment and structure
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Back     alignment and structure
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Back     alignment and structure
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Back     alignment and structure
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} Back     alignment and structure
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Back     alignment and structure
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 Back     alignment and structure
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Back     alignment and structure
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* Back     alignment and structure
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Back     alignment and structure
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 154
d1js3a_476 c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) 9e-18
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 76.4 bits (187), Expect = 9e-18
 Identities = 46/67 (68%), Positives = 52/67 (77%)

Query: 1   HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
           HWQ+PLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE  V  D RFEV  EV +G
Sbjct: 348 HWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG 407

Query: 61  LVCFRLK 67
           LVCFRLK
Sbjct: 408 LVCFRLK 414

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query154
d1js3a_476 DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] 99.76
d1pmma_450 Glutamate decarboxylase beta, GadB {Escherichia co 99.2
d1ezfa_ 333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 98.21
d2z67a1434 Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco 96.03
d1wyua1437 Glycine dehydrogenase (decarboxylating) subunit 1 95.8
d1wyub1471 Glycine dehydrogenase subunit 2 (P-protein) {Therm 95.08
d1v72a1345 Phenylserine aldolase PSALD {Pseudomonas putida [T 93.22
d3bc8a1445 Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu 93.16
d1elua_381 Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 89.33
d1pffa_331 Methionine gamma-lyase, MGL {Trichomonas vaginalis 81.7
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.76  E-value=3.9e-19  Score=146.41  Aligned_cols=71  Identities=65%  Similarity=1.144  Sum_probs=68.2

Q ss_pred             CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccccc
Q psy9810           1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKV   71 (154)
Q Consensus         1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~~~   71 (154)
                      ++++||||+++|||+|++|+.+|.+||+++|++++++|++|++.|+++|+||++.+|++|+|||||++.+.
T Consensus       348 ~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~  418 (476)
T d1js3a_         348 HWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDG  418 (476)
T ss_dssp             GSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHH
T ss_pred             ccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChH
Confidence            47899999999999999999999999999999999999999999999999999999999999999988643
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Back     information, alignment and structure