Psyllid ID: psy9821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MLCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT
Secondary Structure (PSIPRED)
cccccccccccccccEEccccEEEEEccccccccccccccccccccccccEEEcccccEEEEcccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cEcEccccccHHHHHHcccccccccccEcEccccccHHHHccccccccccEEEcccccEEEEEccccccccEEEEEcc
Coil and Loop (DISEMBL)
MLCFISDSCAVAVAARHNISvyeedarwsyslcpdvdecglglhdchkdakctnthgsyscqckrgfhgdgktsctkt
Flexible Loop (DISEMBL)
MLCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTnthgsyscqckrgfhgdgktsctkt
Low Complexity Region (SEG)
MLCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT
Disordered region (IsUnstruct)
*LCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF***********
Disordered Region (DISOPRED)
MLCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC***
Disordered Region (DISEMBL)
MLCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF***********
Disordered Region (DISPRO)
MLCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
P60882	2789	Multiple epidermal growth	yes	N/A	0.692	0.019	0.592	9e-13
Q9QYP0	2788	Multiple epidermal growth	yes	N/A	0.692	0.019	0.592	9e-13
Q7Z7M0	2845	Multiple epidermal growth	yes	N/A	0.692	0.018	0.574	2e-12
P41950	1090	EGF-like domain-containin	yes	N/A	0.884	0.063	0.416	1e-10
Q91V88	561	Nephronectin OS=Mus muscu	no	N/A	0.474	0.065	0.589	4e-07
Q5RBP1	565	Nephronectin OS=Pongo abe	no	N/A	0.5	0.069	0.560	8e-07
Q9JJS0	997	Signal peptide, CUB and E	no	N/A	0.461	0.036	0.605	1e-06
Q9NQ36	999	Signal peptide, CUB and E	no	N/A	0.461	0.036	0.605	1e-06
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.5	0.007	0.487	3e-06
P14543	1247	Nidogen-1 OS=Homo sapiens	no	N/A	0.474	0.029	0.589	3e-06

>sp|P60882|MEGF8_MOUSE Multiple epidermal growth factor-like domains protein 8 OS=Mus musculus GN=Megf8 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 37/54 (68%)

Query: 25   DARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
             ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+ GDG T C +T
Sbjct: 1064 PARWAYARCPDVDECRLGLARCHPRATCLNTPLSYECHCQRGYQGDGITHCNRT 1117

Mus musculus (taxid: 10090)

>sp|Q9QYP0|MEGF8_RAT Multiple epidermal growth factor-like domains protein 8 OS=Rattus norvegicus GN=Megf8 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 37/54 (68%)

Query: 25   DARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
             ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+ GDG T C +T
Sbjct: 1064 PARWAYARCPDVDECRLGLARCHPRATCLNTPLSYECHCQRGYQGDGITHCNRT 1117

Rattus norvegicus (taxid: 10116)

>sp|Q7Z7M0|MEGF8_HUMAN Multiple epidermal growth factor-like domains protein 8 OS=Homo sapiens GN=MEGF8 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 37/54 (68%)

Query: 25   DARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
             ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+ GDG + C +T
Sbjct: 1064 PARWAYARCPDVDECRLGLARCHPRATCLNTPLSYECHCQRGYQGDGISHCNRT 1117

Homo sapiens (taxid: 9606)

>sp|P41950|YLK2_CAEEL EGF-like domain-containing protein D1044.2 OS=Caenorhabditis elegans GN=D1044.2 PE=4 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 7   DSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRG 66
           D C   +     ++ Y+ D    Y+ C DVDEC      CHK+A CTNT G Y C CK G
Sbjct: 384 DRCGEPIQRCQCLNGYKGDG---YNNCEDVDECKTNSTICHKNAICTNTPGRYFCMCKEG 440

Query: 67  FHGDGKTSCTKT 78
           F GDG+  C+++
Sbjct: 441 FSGDGQNDCSQS 452

Caenorhabditis elegans (taxid: 6239)

>sp|Q91V88|NPNT_MOUSE Nephronectin OS=Mus musculus GN=Npnt PE=1 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
           C D+DEC LG H C   A+C N HGSY CQC+ G+ GDG
Sbjct: 212 CHDIDECSLGQHQCSSYARCYNIHGSYKCQCRDGYEGDG 250

Functional ligand of integrin alpha-8/beta-1 in kidney development. Regulates the expression of GDNF with integrin alpha-8/beta-1 which is essential for kidney development. May also play a role in the development and function of various tissues, regulating cell adhesion, spreading and survival through the binding of several integrins.

Mus musculus (taxid: 10090)

>sp|Q5RBP1|NPNT_PONAB Nephronectin OS=Pongo abelii GN=NPNT PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 28/41 (68%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
           C D+DEC LG + C   A+C N HGSY C+CK G+ GDG T
Sbjct: 212 CHDIDECSLGQYQCSSFARCYNIHGSYKCKCKEGYQGDGLT 252

Functional ligand of integrin alpha-8/beta-1 in kidney development. Regulates the expression of GDNF with integrin alpha-8/beta-1 which is essential for kidney development. May also play a role in the development and function of various tissues, regulating cell adhesion, spreading and survival through the binding of several integrins.

Pongo abelii (taxid: 9601)

>sp|Q9JJS0|SCUB2_MOUSE Signal peptide, CUB and EGF-like domain-containing protein 2 OS=Mus musculus GN=Scube2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGK 72
          DVDEC  GL DCH DA C NT  SY C CK G+ G+G+
Sbjct: 43 DVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR 80

Mus musculus (taxid: 10090)

>sp|Q9NQ36|SCUB2_HUMAN Signal peptide, CUB and EGF-like domain-containing protein 2 OS=Homo sapiens GN=SCUBE2 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGK 72
          DVDEC  GL DCH DA C NT  SY C CK G+ G+G+
Sbjct: 45 DVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEGR 82

Homo sapiens (taxid: 9606)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query: 33   CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
            C DVDEC  GL DCH +  C NT G + C C RG+   G +
Sbjct: 4717 CEDVDECLEGLDDCHYNQLCENTPGGHRCSCPRGYRMQGPS 4757

Homo sapiens (taxid: 9606)

>sp|P14543|NID1_HUMAN Nidogen-1 OS=Homo sapiens GN=NID1 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
           C DVDEC      CH DA C NT GS++CQCK G+ GDG
Sbjct: 800 CQDVDECQPS--RCHPDAFCYNTPGSFTCQCKPGYQGDG 836

Sulfated glycoprotein widely distributed in basement membranes and tightly associated with laminin. Also binds to collagen IV and perlecan. It probably has a role in cell-extracellular matrix interactions.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
307181027	3047	Multiple epidermal growth factor-like do	0.910	0.023	0.633	3e-20
307200226	3025	Multiple epidermal growth factor-like do	0.910	0.023	0.619	5e-20
322792677	2797	hypothetical protein SINV_14129 [Solenop	0.910	0.025	0.619	1e-19
383864510	3039	PREDICTED: LOW QUALITY PROTEIN: multiple	0.897	0.023	0.591	1e-19
340729098	3028	PREDICTED: multiple epidermal growth fac	0.910	0.023	0.591	1e-19
350401390	3022	PREDICTED: multiple epidermal growth fac	0.910	0.023	0.591	2e-19
380013693	3035	PREDICTED: multiple epidermal growth fac	0.910	0.023	0.591	5e-19
345483939	3046	PREDICTED: multiple epidermal growth fac	0.910	0.023	0.619	6e-19
195434397	2938	GK15317 [Drosophila willistoni] gi|19416	0.897	0.023	0.586	3e-18
195472897	2898	GE18731 [Drosophila yakuba] gi|194174835	0.692	0.018	0.740	7e-18

>gi|307181027|gb|EFN68801.1| Multiple epidermal growth factor-like domains 8 [Camponotus floridanus]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 57/71 (80%)

Query: 8    SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C+V +    N S+  +++ W+Y+ CPDVDEC LGLHDCH DA CTNTHGS+SCQCKRGF
Sbjct: 1266 NCSVVINEDRNSSLKADESGWAYAQCPDVDECDLGLHDCHPDALCTNTHGSFSCQCKRGF 1325

Query: 68   HGDGKTSCTKT 78
            +GDGK +CTKT
Sbjct: 1326 NGDGKENCTKT 1336

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200226|gb|EFN80520.1| Multiple epidermal growth factor-like domains 8 [Harpegnathos saltator]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 57/71 (80%)

Query: 8    SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C++ +    N S+  +++ W+Y+ CPDVDEC LGLHDCH DA CTNTHGS+SCQCKRGF
Sbjct: 1266 NCSLVINEYRNSSLKADESSWAYAQCPDVDECDLGLHDCHPDALCTNTHGSFSCQCKRGF 1325

Query: 68   HGDGKTSCTKT 78
            +GDGK +CTKT
Sbjct: 1326 NGDGKENCTKT 1336

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792677|gb|EFZ16551.1| hypothetical protein SINV_14129 [Solenopsis invicta]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%)

Query: 8    SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C+  +    N S+  +++ W+Y+ CPDVDEC LGLHDCH DA CTNTHGS+SCQCKRGF
Sbjct: 1033 NCSTIINEYRNSSLNADESGWAYAQCPDVDECDLGLHDCHPDALCTNTHGSFSCQCKRGF 1092

Query: 68   HGDGKTSCTKT 78
            +GDGK +CTKT
Sbjct: 1093 NGDGKENCTKT 1103

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864510|ref|XP_003707721.1| PREDICTED: LOW QUALITY PROTEIN: multiple epidermal growth factor-like domains protein 8-like [Megachile rotundata]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 57/71 (80%)

Query: 8    SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C++ +    N ++  +++ W+Y+ CPDVDEC LGLHDCH +A CTNTHGS+SCQCKRGF
Sbjct: 1280 NCSLVINEYQNTTLESDESGWAYAQCPDVDECDLGLHDCHPNAVCTNTHGSFSCQCKRGF 1339

Query: 68   HGDGKTSCTKT 78
            +GDGK +CTKT
Sbjct: 1340 NGDGKENCTKT 1350

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729098|ref|XP_003402845.1| PREDICTED: multiple epidermal growth factor-like domains protein 8-like [Bombus terrestris]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 57/71 (80%)

Query: 8    SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C++ +    N ++  +++ W+Y+ CPDVDEC LGLHDCH +A CTNTHGS+SCQCKRGF
Sbjct: 1267 NCSLVINEYQNTTLETDESGWAYAQCPDVDECDLGLHDCHPNAVCTNTHGSFSCQCKRGF 1326

Query: 68   HGDGKTSCTKT 78
            +GDGK +CTKT
Sbjct: 1327 NGDGKENCTKT 1337

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401390|ref|XP_003486136.1| PREDICTED: multiple epidermal growth factor-like domains protein 8-like [Bombus impatiens]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 57/71 (80%)

Query: 8    SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C++ +    N ++  +++ W+Y+ CPDVDEC LGLHDCH +A CTNTHGS+SCQCKRGF
Sbjct: 1267 NCSLVINEYQNTTLETDESGWAYAQCPDVDECDLGLHDCHPNAVCTNTHGSFSCQCKRGF 1326

Query: 68   HGDGKTSCTKT 78
            +GDGK +CTKT
Sbjct: 1327 NGDGKENCTKT 1337

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013693|ref|XP_003690884.1| PREDICTED: multiple epidermal growth factor-like domains protein 8 [Apis florea]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 57/71 (80%)

Query: 8    SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C++ +    N ++  +++ W+Y+ CPDVDEC LGLHDCH +A CTNTHGS+SCQCKRGF
Sbjct: 1272 NCSLIINEYQNTTLEIDESGWAYAQCPDVDECDLGLHDCHLNAVCTNTHGSFSCQCKRGF 1331

Query: 68   HGDGKTSCTKT 78
            +GDGK +CTKT
Sbjct: 1332 NGDGKENCTKT 1342

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483939|ref|XP_001604319.2| PREDICTED: multiple epidermal growth factor-like domains protein 8-like [Nasonia vitripennis]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query: 8    SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C+  +    N ++   +A W+Y+ CPDVDEC LGLHDCH +A CTNTHGSYSCQCKRGF
Sbjct: 1268 NCSQVINELQNGTLEVGEAGWAYAQCPDVDECDLGLHDCHPNALCTNTHGSYSCQCKRGF 1327

Query: 68   HGDGKTSCTKT 78
            +GDGK +CTKT
Sbjct: 1328 NGDGKENCTKT 1338

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195434397|ref|XP_002065189.1| GK15317 [Drosophila willistoni] gi|194161274|gb|EDW76175.1| GK15317 [Drosophila willistoni]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 57/75 (76%), Gaps = 5/75 (6%)

Query: 4    FISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQC 63
            + S +C++A+      S  + DA W+Y+ CPDVDECGLGLHDCHK+AKCTNT GSY+C C
Sbjct: 1178 YSSGNCSLALN-----SSSQHDAEWAYAQCPDVDECGLGLHDCHKEAKCTNTQGSYNCHC 1232

Query: 64   KRGFHGDGKTSCTKT 78
            +RGF GDG+ SC +T
Sbjct: 1233 RRGFVGDGRFSCQRT 1247

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472897|ref|XP_002088734.1| GE18731 [Drosophila yakuba] gi|194174835|gb|EDW88446.1| GE18731 [Drosophila yakuba]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 47/54 (87%)

Query: 25   DARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
            DA W+Y+ CPDVDECGLGLHDCHK+AKCTNT GSY+C C+RG+ GDGK SC +T
Sbjct: 1178 DAEWAYAQCPDVDECGLGLHDCHKEAKCTNTQGSYNCHCRRGYIGDGKFSCVRT 1231

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
FB|FBgn0031981	2898	CG7466 [Drosophila melanogaste	0.897	0.024	0.586	2.6e-20
ZFIN|ZDB-GENE-090730-1	2774	megf8 "multiple EGF-like-domai	0.897	0.025	0.521	1.3e-14
UNIPROTKB|E1BPS6	2772	MEGF8 "Uncharacterized protein	0.897	0.025	0.507	2.5e-13
UNIPROTKB|E2RM39	2787	MEGF8 "Uncharacterized protein	0.897	0.025	0.507	3.2e-13
UNIPROTKB|F1RGK2	2789	MEGF8 "Uncharacterized protein	0.897	0.025	0.507	3.2e-13
RGD|621190	2788	Megf8 "multiple EGF-like-domai	0.679	0.019	0.603	4.1e-13
MGI|MGI:2446294	2789	Megf8 "multiple EGF-like-domai	0.679	0.019	0.603	4.1e-13
UNIPROTKB|Q7Z7M0	2845	MEGF8 "Multiple epidermal grow	0.679	0.018	0.584	1.1e-12
WB|WBGene00017028	1090	dex-1 [Caenorhabditis elegans	0.884	0.063	0.416	2.1e-10
UNIPROTKB|P41950	1090	D1044.2 "EGF-like domain-conta	0.884	0.063	0.416	2.1e-10

FB|FBgn0031981 CG7466 [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 44/75 (58%), Positives = 58/75 (77%)

Query:     4 FISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQC 63
             + + +C++A+    N S +  DA W+Y+ CPDVDECGLGLHDCHK+AKCTNT GSY+C C
Sbjct:  1162 YSAGNCSLAL----NSSSHH-DAEWAYAQCPDVDECGLGLHDCHKEAKCTNTQGSYNCHC 1216

Query:    64 KRGFHGDGKTSCTKT 78
             +RG+ GDGK SC +T
Sbjct:  1217 RRGYIGDGKFSCVRT 1231

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-090730-1 megf8 "multiple EGF-like-domains 8" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 37/71 (52%), Positives = 44/71 (61%)

Query:     8 SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
             +C+ AVA    +   + DA WSY  CPDV+EC LGLH CH  A C NT  SY C C+RGF
Sbjct:  1037 NCSTAVAELEGMEG-DGDAVWSYPSCPDVEECRLGLHTCHPSATCVNTPTSYECHCERGF 1095

Query:    68 HGDGKTSCTKT 78
              GDG   C +T
Sbjct:  1096 TGDGVHHCNQT 1106

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0061371 "determination of heart left/right asymmetry" evidence=IMP

GO:0071907 "determination of digestive tract left/right asymmetry" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:1900164 "nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry" evidence=IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

GO:0055113 "epiboly involved in gastrulation with mouth forming second" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BPS6 MEGF8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 192 (72.6 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 36/71 (50%), Positives = 45/71 (63%)

Query:     8 SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
             +C++ V     +SV    ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+
Sbjct:  1031 NCSLWVGEGLGLSV-ALPARWAYARCPDVDECRLGLARCHLRATCLNTPLSYECHCQRGY 1089

Query:    68 HGDGKTSCTKT 78
              GDG T C +T
Sbjct:  1090 QGDGVTYCNRT 1100

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2RM39 MEGF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 36/71 (50%), Positives = 45/71 (63%)

Query:     8 SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
             +C++ V     +SV    ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+
Sbjct:  1047 NCSLWVGEGLGLSV-ALPARWAYARCPDVDECRLGLARCHLRATCLNTPLSYECHCQRGY 1105

Query:    68 HGDGKTSCTKT 78
              GDG T C +T
Sbjct:  1106 QGDGITYCNRT 1116

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1RGK2 MEGF8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 36/71 (50%), Positives = 45/71 (63%)

Query:     8 SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
             +C++ V     +SV    ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+
Sbjct:  1048 NCSLWVGEGLGLSV-ALPARWAYARCPDVDECRLGLARCHLRATCLNTPLSYECHCQRGY 1106

Query:    68 HGDGKTSCTKT 78
              GDG T C +T
Sbjct:  1107 QGDGITYCNRT 1117

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|621190 Megf8 "multiple EGF-like-domains 8" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 32/53 (60%), Positives = 37/53 (69%)

Query:    26 ARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
             ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+ GDG T C +T
Sbjct:  1065 ARWAYARCPDVDECRLGLARCHPRATCLNTPLSYECHCQRGYQGDGITHCNRT 1117

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0061371 "determination of heart left/right asymmetry" evidence=ISO

GO:0071907 "determination of digestive tract left/right asymmetry" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=ISO

MGI|MGI:2446294 Megf8 "multiple EGF-like-domains 8" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 32/53 (60%), Positives = 37/53 (69%)

Query:    26 ARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
             ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+ GDG T C +T
Sbjct:  1065 ARWAYARCPDVDECRLGLARCHPRATCLNTPLSYECHCQRGYQGDGITHCNRT 1117

GO:0003674 "molecular_function" evidence=ND

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IMP

GO:0061371 "determination of heart left/right asymmetry" evidence=ISO;IMP

GO:0071907 "determination of digestive tract left/right asymmetry" evidence=ISO;IMP

GO:1900164 "nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry" evidence=ISO

UNIPROTKB|Q7Z7M0 MEGF8 "Multiple epidermal growth factor-like domains protein 8" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 31/53 (58%), Positives = 37/53 (69%)

Query:    26 ARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
             ARW+Y+ CPDVDEC LGL  CH  A C NT  SY C C+RG+ GDG + C +T
Sbjct:  1065 ARWAYARCPDVDECRLGLARCHPRATCLNTPLSYECHCQRGYQGDGISHCNRT 1117

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00017028 dex-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 160 (61.4 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 30/72 (41%), Positives = 40/72 (55%)

Query:     7 DSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRG 66
             D C   +     ++ Y+ D    Y+ C DVDEC      CHK+A CTNT G Y C CK G
Sbjct:   384 DRCGEPIQRCQCLNGYKGDG---YNNCEDVDECKTNSTICHKNAICTNTPGRYFCMCKEG 440

Query:    67 FHGDGKTSCTKT 78
             F GDG+  C+++
Sbjct:   441 FSGDGQNDCSQS 452

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0003391 "amphid sensory organ dendrite retrograde extension" evidence=IGI;IMP

GO:0032590 "dendrite membrane" evidence=IDA

UNIPROTKB|P41950 D1044.2 "EGF-like domain-containing protein D1044.2" [Caenorhabditis elegans (taxid:6239)]

 Score = 160 (61.4 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 30/72 (41%), Positives = 40/72 (55%)

Query:     7 DSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRG 66
             D C   +     ++ Y+ D    Y+ C DVDEC      CHK+A CTNT G Y C CK G
Sbjct:   384 DRCGEPIQRCQCLNGYKGDG---YNNCEDVDECKTNSTICHKNAICTNTPGRYFCMCKEG 440

Query:    67 FHGDGKTSCTKT 78
             F GDG+  C+++
Sbjct:   441 FSGDGQNDCSQS 452

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7Z7M0	MEGF8_HUMAN	No assigned EC number	0.5740	0.6923	0.0189	yes	N/A
Q9QYP0	MEGF8_RAT	No assigned EC number	0.5925	0.6923	0.0193	yes	N/A
P60882	MEGF8_MOUSE	No assigned EC number	0.5925	0.6923	0.0193	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	78
pfam12947	36	pfam12947, EGF_3, EGF domain	2e-08
pfam07645	42	pfam07645, EGF_CA, Calcium-binding EGF domain	6e-08
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	9e-07
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	3e-06
cd01475	224	cd01475, vWA_Matrilin, VWA_Matrilin: In cartilagin	1e-05
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	0.001

>gnl|CDD|205157 pfam12947, EGF_3, EGF domain

 Score = 45.2 bits (108), Expect = 2e-08
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 39 CGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
          C      CH +A CTNT GS++C CK G+ GDG T
Sbjct: 1  CAENNGGCHPNATCTNTGGSFTCTCKSGYTGDGVT 35

This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36

>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain

 Score = 43.9 bits (104), Expect = 6e-08
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF-HGDGKTSC 75
          DVDEC  G H+C  +  C NT GS+ C C  G+ + +  T+C
Sbjct: 1  DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42

Length = 42

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 40.7 bits (96), Expect = 9e-07
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
          D+DEC  G + C     C NT GSY C C  G+ G 
Sbjct: 1  DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTGR 35

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 39.5 bits (93), Expect = 3e-06
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH 68
          D+DEC  G + C     C NT GSY C+C  G+ 
Sbjct: 1  DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT 33

Length = 39

>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 31  SLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
            +C   D C    H C +   C +T GSY C C  G+
Sbjct: 182 KICVVPDLCATLSHVCQQ--VCISTPGSYLCACTEGY 216

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. Length = 224

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 32.8 bits (75), Expect = 0.001
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 44 HDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
          + C     C NT GSY C C  G+ GD 
Sbjct: 6  NPCSNGGTCVNTPGSYRCVCPPGYTGDR 33

Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.62
KOG4289|consensus	2531		98.58
KOG1214|consensus	1289		98.54
KOG1219|consensus	4289		98.43
KOG1214|consensus	1289		98.32
KOG1219|consensus	4289		98.28
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.97
KOG4289|consensus	2531		97.93
PF12662	24	cEGF: Complement Clr-like EGF-like	97.92
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.7
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.53
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.45
KOG4260|consensus	350		97.31
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	97.3
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.2
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.18
smart00181	35	EGF Epidermal growth factor-like domain.	97.13
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.07
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.97
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	96.95
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	96.92
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.87
smart00181	35	EGF Epidermal growth factor-like domain.	96.45
KOG1217|consensus	487		96.19
KOG1217|consensus	487		96.14
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	95.46
KOG1225|consensus	525		93.88
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	93.55
PHA02887	126	EGF-like protein; Provisional	93.25
KOG4260|consensus	350		91.78
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	91.78
KOG1225|consensus	525		90.72
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	88.83
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	81.93
KOG1226|consensus	783		81.26
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	80.71

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.62  E-value=7.4e-08  Score=41.31  Aligned_cols=35  Identities=49%  Similarity=1.128  Sum_probs=31.1

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      +++||....+.|.....|+|+.|+|.|.|+.||..
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~   35 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYEL   35 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence            47888887788987899999999999999999984

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG4289|consensus

Probab=98.58  E-value=7.2e-08  Score=65.80  Aligned_cols=53  Identities=25%  Similarity=0.668  Sum_probs=47.8

Q ss_pred             cCCcceeecCCCCCCCCC-CCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          16 RHNISVYEEDARWSYSLC-PDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        16 ~~~~~~c~c~~g~~~~~C-~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..+.+.|+||+||+|.+| +++++|.  ..+|.+++.|..+.++|.|.|+++|.++
T Consensus      1218 pvnglrCrCPpGFTgd~CeTeiDlCY--s~pC~nng~C~srEggYtCeCrpg~tGe 1271 (2531)
T KOG4289|consen 1218 PVNGLRCRCPPGFTGDYCETEIDLCY--SGPCGNNGRCRSREGGYTCECRPGFTGE 1271 (2531)
T ss_pred             ccCceeEeCCCCCCcccccchhHhhh--cCCCCCCCceEEecCceeEEecCCcccc
Confidence            457899999999999999 7899998  5789999999999999999999999864

>KOG1214|consensus

Probab=98.54  E-value=1.3e-07  Score=61.75  Aligned_cols=57  Identities=40%  Similarity=0.793  Sum_probs=49.7

Q ss_pred             CCcceeecCCCCC--CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCCCcee
Q psy9821          17 HNISVYEEDARWS--YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT   76 (78)
Q Consensus        17 ~~~~~c~c~~g~~--~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c~   76 (78)
                      -+.|+|.|-+||.  |..|.+.++|.  ++.|.+..+|.+.+++|.|+|..||.+++.. |+
T Consensus       806 gs~y~C~CLPGfsGDG~~c~dvDeC~--psrChp~A~CyntpgsfsC~C~pGy~GDGf~-CV  864 (1289)
T KOG1214|consen  806 GSTYSCACLPGFSGDGHQCTDVDECS--PSRCHPAATCYNTPGSFSCRCQPGYYGDGFQ-CV  864 (1289)
T ss_pred             CceEEEeecCCccCCccccccccccC--ccccCCCceEecCCCcceeecccCccCCCce-ec
Confidence            4679999999995  67888889998  6789888999999999999999999988765 54

>KOG1219|consensus

Probab=98.43  E-value=7.3e-07  Score=63.36  Aligned_cols=52  Identities=19%  Similarity=0.527  Sum_probs=38.9

Q ss_pred             cCCcceeecCCCCCCCCC-CCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          16 RHNISVYEEDARWSYSLC-PDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        16 ~~~~~~c~c~~g~~~~~C-~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      -.++|.|.|++.|+|.+| .+++.|.  ..+|..+++|.-..++|.|.|+.+|.+
T Consensus      3882 ~~ggy~CkCpsqysG~~CEi~~epC~--snPC~~GgtCip~~n~f~CnC~~gyTG 3934 (4289)
T KOG1219|consen 3882 PKGGYKCKCPSQYSGNHCEIDLEPCA--SNPCLTGGTCIPFYNGFLCNCPNGYTG 3934 (4289)
T ss_pred             CCCceEEeCcccccCccccccccccc--CCCCCCCCEEEecCCCeeEeCCCCccC
Confidence            356777888888888888 5677776  567777778887778888888877764

>KOG1214|consensus

Probab=98.32  E-value=2.3e-06  Score=56.25  Aligned_cols=64  Identities=28%  Similarity=0.650  Sum_probs=53.2

Q ss_pred             CCCCCcccccccccCCcceeecCCCC--CCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARW--SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~--~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      |+-++.|.   .....+|.|.|+.||  +++.|.+.++|....+.|.+...|++.++.|+|.|..+|..
T Consensus       702 cdt~a~C~---pg~~~~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F  767 (1289)
T KOG1214|consen  702 CDTTARCH---PGTGVDYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEF  767 (1289)
T ss_pred             cCCCcccc---CCCCcceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeeccee
Confidence            44444443   355678999999999  57899999999988899999999999999999999998864

>KOG1219|consensus

Probab=98.28  E-value=1.1e-06  Score=62.47  Aligned_cols=55  Identities=24%  Similarity=0.533  Sum_probs=47.8

Q ss_pred             ccccCCcceeecCCCCCCCCCC--CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          13 VAARHNISVYEEDARWSYSLCP--DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~~C~--~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      |..+.++|.|.|+.||+|..|+  ++++|.  ...|..++.|++..|+|.|.|.+++++
T Consensus      3917 Cip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs--~n~C~~gg~C~n~~gsf~CncT~g~~g 3973 (4289)
T KOG1219|consen 3917 CIPFYNGFLCNCPNGYTGKRCEARGISECS--KNVCGTGGQCINIPGSFHCNCTPGILG 3973 (4289)
T ss_pred             EEecCCCeeEeCCCCccCceeecccccccc--cccccCCceeeccCCceEeccChhHhc
Confidence            4567799999999999999994  478887  568988999999999999999998874

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.97  E-value=8.9e-06  Score=33.72  Aligned_cols=31  Identities=55%  Similarity=1.118  Sum_probs=24.4

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCceeCCCC
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT   73 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~   73 (78)
                      .+.|.+.+.|.++.+++.|.|..||.+++..
T Consensus         5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~~   35 (36)
T PF12947_consen    5 NGGCHPNATCTNTGGSYTCTCKPGYEGDGFF   35 (36)
T ss_dssp             GGGS-TTCEEEE-TTSEEEEE-CEEECCSTC
T ss_pred             CCCCCCCcEeecCCCCEEeECCCCCccCCcC
Confidence            4567778999999999999999999998764

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG4289|consensus

Probab=97.93  E-value=2.2e-05  Score=54.49  Aligned_cols=58  Identities=22%  Similarity=0.521  Sum_probs=45.0

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCCC---cccCCCCCCCCCCCCEEEeCC-CCeEeeCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCPD---VDECGLGLHDCHKDAKCTNTH-GSYSCQCKRG   66 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~---~~~c~~~~~~c~~~~~C~~~~-~~~~c~C~~g   66 (78)
                      |.+|..|    ....+.|.|.|.+||+|++|+-   ...|.  ++.|.++++|.+.+ ++|.|.|+.|
T Consensus      1247 C~nng~C----~srEggYtCeCrpg~tGehCEvs~~agrCv--pGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1247 CGNNGRC----RSREGGYTCECRPGFTGEHCEVSARAGRCV--PGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred             CCCCCce----EEecCceeEEecCCccccceeeecccCccc--cceecCCCEEeecCCCceeccCCCc
Confidence            4455544    5678999999999999999942   23354  67899899999876 7788999877

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.92  E-value=1.1e-05  Score=30.48  Aligned_cols=20  Identities=20%  Similarity=0.280  Sum_probs=16.0

Q ss_pred             cceeecCCCCC----CCCCCCccc
Q psy9821          19 ISVYEEDARWS----YSLCPDVDE   38 (78)
Q Consensus        19 ~~~c~c~~g~~----~~~C~~~~~   38 (78)
                      +|.|.|++||.    +..|++++|
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            57899999993    678888764

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.70  E-value=1.6e-05  Score=32.92  Aligned_cols=24  Identities=4%  Similarity=0.016  Sum_probs=19.2

Q ss_pred             CCCcccccccccCCcceeecCCCC
Q psy9821           5 ISDSCAVAVAARHNISVYEEDARW   28 (78)
Q Consensus         5 ~~~~C~~~~~~~~~~~~c~c~~g~   28 (78)
                      +|..|++.|.+..+++.|.|++||
T Consensus         4 ~NGgC~h~C~~~~g~~~C~C~~Gy   27 (36)
T PF14670_consen    4 NNGGCSHICVNTPGSYRCSCPPGY   27 (36)
T ss_dssp             GGGGSSSEEEEETTSEEEE-STTE
T ss_pred             CCCCcCCCCccCCCceEeECCCCC
Confidence            466788888888888888998888

...

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.53  E-value=0.00033  Score=28.80  Aligned_cols=32  Identities=44%  Similarity=1.138  Sum_probs=24.7

Q ss_pred             cccCCCCCCCCCCCCEEEeCCCCeEeeCCCCce
Q psy9821          36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH   68 (78)
Q Consensus        36 ~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~   68 (78)
                      +++|... .+|.....|++..++|.|.|+.+|.
T Consensus         2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~   33 (39)
T smart00179        2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYT   33 (39)
T ss_pred             cccCcCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence            3555532 5677667899999999999999987

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.45  E-value=4.1e-05  Score=30.83  Aligned_cols=27  Identities=11%  Similarity=0.047  Sum_probs=19.5

Q ss_pred             CCCCCCcccccccccCCcceeecCCCCCCC
Q psy9821           2 LCFISDSCAVAVAARHNISVYEEDARWSYS   31 (78)
Q Consensus         2 ~c~~~~~C~~~~~~~~~~~~c~c~~g~~~~   31 (78)
                      .|.++++|....   ...|.|.|++||+|.
T Consensus         5 ~C~n~g~C~~~~---~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    5 PCQNGGTCIDLP---GGGYTCECPPGYTGK   31 (32)
T ss_dssp             SSTTTEEEEEES---TSEEEEEEBTTEEST
T ss_pred             cCCCCeEEEeCC---CCCEEeECCCCCccC
Confidence            366666665333   589999999999775

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG4260|consensus

Probab=97.31  E-value=0.00023  Score=41.86  Aligned_cols=47  Identities=32%  Similarity=0.690  Sum_probs=39.7

Q ss_pred             ecCCCC--CCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          23 EEDARW--SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        23 ~c~~g~--~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      .|..||  +...|.++++|...+.+|....+|+|..|+|.|....||..
T Consensus       221 kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~  269 (350)
T KOG4260|consen  221 KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK  269 (350)
T ss_pred             hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence            367788  45689999999988888988899999999999998777763

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=97.30  E-value=9.8e-05  Score=23.88  Aligned_cols=13  Identities=15%  Similarity=0.447  Sum_probs=9.2

Q ss_pred             eeecCCCCCCCCC
Q psy9821          21 VYEEDARWSYSLC   33 (78)
Q Consensus        21 ~c~c~~g~~~~~C   33 (78)
                      .|+|++||+|..|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            3788999988765

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.20  E-value=0.00037  Score=27.99  Aligned_cols=27  Identities=30%  Similarity=1.029  Sum_probs=23.4

Q ss_pred             CCCCCCCEEEeCC-CCeEeeCCCCceeC
Q psy9821          44 HDCHKDAKCTNTH-GSYSCQCKRGFHGD   70 (78)
Q Consensus        44 ~~c~~~~~C~~~~-~~~~c~C~~g~~~~   70 (78)
                      .+|...+.|+... +.|.|.|+.+|.++
T Consensus         4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    4 NPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            4788789999998 89999999999864

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.18  E-value=0.00077  Score=27.85  Aligned_cols=25  Identities=40%  Similarity=0.926  Sum_probs=19.5

Q ss_pred             CCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          44 HDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        44 ~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +-|.  ..|++.+++++|.|+.||...
T Consensus         6 GgC~--h~C~~~~g~~~C~C~~Gy~L~   30 (36)
T PF14670_consen    6 GGCS--HICVNTPGSYRCSCPPGYKLA   30 (36)
T ss_dssp             GGSS--SEEEEETTSEEEE-STTEEE-
T ss_pred             CCcC--CCCccCCCceEeECCCCCEEC
Confidence            4454  889999999999999999853

...

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.13  E-value=0.00084  Score=27.05  Aligned_cols=18  Identities=50%  Similarity=1.246  Sum_probs=8.7

Q ss_pred             EEEeCCCCeEeeCCCCce
Q psy9821          51 KCTNTHGSYSCQCKRGFH   68 (78)
Q Consensus        51 ~C~~~~~~~~c~C~~g~~   68 (78)
                      .|++..+.+.|.|+.||.
T Consensus        12 ~C~~~~~~~~C~C~~g~~   29 (35)
T smart00181       12 TCINTPGSYTCSCPPGYT   29 (35)
T ss_pred             EEECCCCCeEeECCCCCc
Confidence            444444444555554443

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.07  E-value=0.0021  Score=25.98  Aligned_cols=32  Identities=47%  Similarity=1.159  Sum_probs=24.1

Q ss_pred             ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          37 DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      ++|... .+|.....|.+..+.|.|.|+.+|.+
T Consensus         3 ~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~g   34 (38)
T cd00054           3 DECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG   34 (38)
T ss_pred             ccCCCC-CCcCCCCEeECCCCCeEeECCCCCcC
Confidence            445421 46766678999999999999999876

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.97  E-value=0.00026  Score=29.26  Aligned_cols=25  Identities=8%  Similarity=0.199  Sum_probs=16.2

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYS   31 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~   31 (78)
                      |..+++|.    +..+.+.|.|++||.|.
T Consensus         8 C~~nA~C~----~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    8 CHPNATCT----NTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             S-TTCEEE----E-TTSEEEEE-CEEECC
T ss_pred             CCCCcEee----cCCCCEEeECCCCCccC
Confidence            56666665    44458999999999653

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=96.95  E-value=0.0018  Score=36.89  Aligned_cols=40  Identities=33%  Similarity=0.647  Sum_probs=33.6

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          29 SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        29 ~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      .+..|.+.++|....+.|.  ..|.+..++|.|.|+.||...
T Consensus       180 ~~~~C~~~~~C~~~~~~c~--~~C~~~~g~~~c~c~~g~~~~  219 (224)
T cd01475         180 QGKICVVPDLCATLSHVCQ--QVCISTPGSYLCACTEGYALL  219 (224)
T ss_pred             ccccCcCchhhcCCCCCcc--ceEEcCCCCEEeECCCCccCC
Confidence            3678988899987667775  789999999999999999754

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=96.92  E-value=0.0018  Score=26.51  Aligned_cols=22  Identities=9%  Similarity=0.025  Sum_probs=18.0

Q ss_pred             cccccCCcceeecCCCCC-CCCC
Q psy9821          12 AVAARHNISVYEEDARWS-YSLC   33 (78)
Q Consensus        12 ~~~~~~~~~~c~c~~g~~-~~~C   33 (78)
                      .|.+..++|.|.|+.||. |..|
T Consensus        16 ~C~~~~g~~~C~C~~g~~~g~~C   38 (39)
T smart00179       16 TCVNTVGSYRCECPPGYTDGRNC   38 (39)
T ss_pred             EeECCCCCeEeECCCCCccCCcC
Confidence            566778889999999997 7665

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.87  E-value=0.004  Score=24.65  Aligned_cols=27  Identities=44%  Similarity=1.099  Sum_probs=22.1

Q ss_pred             CCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          44 HDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        44 ~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..|.....|.+..+.+.|.|+.+|.+.
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCCCCccc
Confidence            456656889998899999999999865

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.45  E-value=0.011  Score=23.67  Aligned_cols=27  Identities=7%  Similarity=0.181  Sum_probs=21.1

Q ss_pred             CCCCCcccc-cccccCCcceeecCCCCC
Q psy9821           3 CFISDSCAV-AVAARHNISVYEEDARWS   29 (78)
Q Consensus         3 c~~~~~C~~-~~~~~~~~~~c~c~~g~~   29 (78)
                      |..+..|.+ .|.+..+.+.|.|++||.
T Consensus         2 C~~~~~C~~~~C~~~~~~~~C~C~~g~~   29 (35)
T smart00181        2 CASGGPCSNGTCINTPGSYTCSCPPGYT   29 (35)
T ss_pred             CCCcCCCCCCEEECCCCCeEeECCCCCc
Confidence            444356877 788888999999999984

>KOG1217|consensus

Probab=96.19  E-value=0.014  Score=35.86  Aligned_cols=58  Identities=29%  Similarity=0.589  Sum_probs=45.1

Q ss_pred             ccccCCcceeecCCCCCCCC---CCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821          13 VAARHNISVYEEDARWSYSL---CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG   71 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~~---C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~   71 (78)
                      +.+..+.+.|++++||.+..   +.++++|....+ |.....|.+..+.+.|.|+.+|.+..
T Consensus       245 c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~C~~g~~g~~  305 (487)
T KOG1217|consen  245 CVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIAS-CPNGGTCVNVPGSYRCTCPPGFTGRL  305 (487)
T ss_pred             ccccCCceeeeCCCCccccccceeeeccccCCCCc-cCCCCeeecCCCcceeeCCCCCCCCC
Confidence            44555668999999997664   577888876544 77778999999889999999988654

>KOG1217|consensus

Probab=96.14  E-value=0.015  Score=35.74  Aligned_cols=54  Identities=28%  Similarity=0.525  Sum_probs=44.6

Q ss_pred             CCcceeecCCCCCCCCCCCc-ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          17 HNISVYEEDARWSYSLCPDV-DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~~-~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ...+.|.|..||.+..+... ++|......|.....|.+..+.|.|.|+.+|.+.
T Consensus       149 ~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~  203 (487)
T KOG1217|consen  149 VGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGS  203 (487)
T ss_pred             CCceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCC
Confidence            35788999999998888654 6887666778878899999999999999998754

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=95.46  E-value=0.024  Score=22.69  Aligned_cols=15  Identities=13%  Similarity=0.140  Sum_probs=11.7

Q ss_pred             cceeecCCCCCCCCC
Q psy9821          19 ISVYEEDARWSYSLC   33 (78)
Q Consensus        19 ~~~c~c~~g~~~~~C   33 (78)
                      ...|.|.+||.|..|
T Consensus        18 ~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen   18 CGRCVCDSGYTGPDC   32 (32)
T ss_pred             CCEEECCCCCcCCCC
Confidence            467889999988765

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG1225|consensus

Probab=93.88  E-value=0.17  Score=32.74  Aligned_cols=41  Identities=29%  Similarity=0.678  Sum_probs=21.5

Q ss_pred             eeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          21 VYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        21 ~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      .|+|++||.|..|+... |   +..|..++.|+  .+  .|.|.+||.+
T Consensus       297 ~CiC~~g~~G~dCs~~~-c---padC~g~G~Ci--~G--~C~C~~Gy~G  337 (525)
T KOG1225|consen  297 ECICNPGYSGKDCSIRR-C---PADCSGHGKCI--DG--ECLCDEGYTG  337 (525)
T ss_pred             EeecCCCcccccccccc-C---CccCCCCCccc--CC--ceEeCCCCcC
Confidence            67777777776664332 2   23455555554  11  3555555543

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=93.55  E-value=0.061  Score=30.65  Aligned_cols=24  Identities=8%  Similarity=0.137  Sum_probs=21.1

Q ss_pred             CCcccccccccCCcceeecCCCCC
Q psy9821           6 SDSCAVAVAARHNISVYEEDARWS   29 (78)
Q Consensus         6 ~~~C~~~~~~~~~~~~c~c~~g~~   29 (78)
                      +..|.+.|.+..++|.|.|++||+
T Consensus       194 ~~~c~~~C~~~~g~~~c~c~~g~~  217 (224)
T cd01475         194 SHVCQQVCISTPGSYLCACTEGYA  217 (224)
T ss_pred             CCCccceEEcCCCCEEeECCCCcc
Confidence            346888899999999999999995

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PHA02887 EGF-like protein; Provisional

Probab=93.25  E-value=0.099  Score=27.23  Aligned_cols=19  Identities=5%  Similarity=0.064  Sum_probs=12.5

Q ss_pred             CCcceeecCCCCCCCCCCC
Q psy9821          17 HNISVYEEDARWSYSLCPD   35 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~   35 (78)
                      ...+.|+|++||.|..|..
T Consensus       105 L~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887        105 LDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             CCCceeECCCCcccCCCCc
Confidence            3556677777777777643

>KOG4260|consensus

Probab=91.78  E-value=0.16  Score=30.42  Aligned_cols=54  Identities=26%  Similarity=0.526  Sum_probs=37.3

Q ss_pred             ccccccCCcceeecCCCCCCCCCCCcccCCCCCCCC-CCCCEEEeCCCCeEeeCCCCce
Q psy9821          11 VAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDC-HKDAKCTNTHGSYSCQCKRGFH   68 (78)
Q Consensus        11 ~~~~~~~~~~~c~c~~g~~~~~C~~~~~c~~~~~~c-~~~~~C~~~~~~~~c~C~~g~~   68 (78)
                      +.|.+..++|.|...+||.+    +.++|..--..| .....|.+..+.++|.|..++.
T Consensus       250 qfCvNteGSf~C~dk~Gy~~----g~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~  304 (350)
T KOG4260|consen  250 QFCVNTEGSFKCEDKEGYKK----GVDECQFCADVCASKNRPCMNIDGQYRCVCFSGLI  304 (350)
T ss_pred             heeecCCCceEecccccccC----ChHHhhhhhhhcccCCCCcccCCccEEEEecccce
Confidence            46788899999999999964    244444211122 2236688999999998887765

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=91.78  E-value=0.15  Score=27.00  Aligned_cols=21  Identities=10%  Similarity=-0.023  Sum_probs=17.0

Q ss_pred             CCcceeecCCCCCCCCCCCcc
Q psy9821          17 HNISVYEEDARWSYSLCPDVD   37 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~~~   37 (78)
                      ...+.|+|..||+|..|+-.+
T Consensus        64 l~~~~CrC~~GYtGeRCEh~d   84 (139)
T PHA03099         64 IDGMYCRCSHGYTGIRCQHVV   84 (139)
T ss_pred             CCCceeECCCCccccccccee
Confidence            467889999999999996443

>KOG1225|consensus

Probab=90.72  E-value=0.69  Score=30.11  Aligned_cols=45  Identities=22%  Similarity=0.555  Sum_probs=28.0

Q ss_pred             CcceeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          18 NISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        18 ~~~~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..-.|+|++||+|..|.. ..|..   .|..+..++  .+  .|.|..+|.++
T Consensus       263 ~~G~CIC~~Gf~G~dC~e-~~Cp~---~cs~~g~~~--~g--~CiC~~g~~G~  307 (525)
T KOG1225|consen  263 VEGRCICPPGFTGDDCDE-LVCPV---DCSGGGVCV--DG--ECICNPGYSGK  307 (525)
T ss_pred             eCCeEeCCCCCcCCCCCc-ccCCc---ccCCCceec--CC--EeecCCCcccc
Confidence            345688999999888854 23432   244333332  22  68888888865

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=88.83  E-value=0.24  Score=27.96  Aligned_cols=60  Identities=23%  Similarity=0.454  Sum_probs=38.0

Q ss_pred             cCCcceeecCCCCC---CCCCCCcccCCC---CCCCCCCCCEEEeCC-----CCeEeeCCCCceeCCCCcee
Q psy9821          16 RHNISVYEEDARWS---YSLCPDVDECGL---GLHDCHKDAKCTNTH-----GSYSCQCKRGFHGDGKTSCT   76 (78)
Q Consensus        16 ~~~~~~c~c~~g~~---~~~C~~~~~c~~---~~~~c~~~~~C~~~~-----~~~~c~C~~g~~~~~~~~c~   76 (78)
                      -.+.|-|.|.+||.   ...|+...+|..   ..-+|...+.|.+..     ..|.|.|.++|...... |+
T Consensus        16 MSNHfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~v-Cv   86 (197)
T PF06247_consen   16 MSNHFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGV-CV   86 (197)
T ss_dssp             ESSEEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSS-EE
T ss_pred             ccCceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCe-Ec
Confidence            35678899999993   566766666643   234576668888765     57899999999865443 44

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=81.93  E-value=1.8  Score=17.98  Aligned_cols=28  Identities=32%  Similarity=0.743  Sum_probs=19.0

Q ss_pred             CCCCCCEEEeCC-CCeEeeCCCCceeCCC
Q psy9821          45 DCHKDAKCTNTH-GSYSCQCKRGFHGDGK   72 (78)
Q Consensus        45 ~c~~~~~C~~~~-~~~~c~C~~g~~~~~~   72 (78)
                      .|+..+.|.+.. |...|.|..||..++.
T Consensus         6 ~cP~NA~C~~~~dG~eecrCllgyk~~~~   34 (37)
T PF12946_consen    6 KCPANAGCFRYDDGSEECRCLLGYKKVGG   34 (37)
T ss_dssp             ---TTEEEEEETTSEEEEEE-TTEEEETT
T ss_pred             cCCCCcccEEcCCCCEEEEeeCCccccCC
Confidence            455567888877 8888999999986544

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>KOG1226|consensus

Probab=81.26  E-value=3.9  Score=28.04  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=14.5

Q ss_pred             eeecCCCCCCCCCC---CcccCCC
Q psy9821          21 VYEEDARWSYSLCP---DVDECGL   41 (78)
Q Consensus        21 ~c~c~~g~~~~~C~---~~~~c~~   41 (78)
                      .|+|.+||+|..|.   +.+.|..
T Consensus       567 ~CvC~~GwtG~~C~C~~std~C~~  590 (783)
T KOG1226|consen  567 RCVCNPGWTGSACNCPLSTDTCES  590 (783)
T ss_pred             cEEcCCCCccCCCCCCCCCccccC
Confidence            37889999998873   3444543

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=80.71  E-value=1.7  Score=17.65  Aligned_cols=13  Identities=31%  Similarity=0.726  Sum_probs=9.4

Q ss_pred             EeeCCCCceeCCC
Q psy9821          60 SCQCKRGFHGDGK   72 (78)
Q Consensus        60 ~c~C~~g~~~~~~   72 (78)
                      +|.|+.||+.++.
T Consensus        19 ~C~CPeGyIlde~   31 (34)
T PF09064_consen   19 QCFCPEGYILDEG   31 (34)
T ss_pred             ceeCCCceEecCC
Confidence            6778888876544

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		6e-05
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		6e-05
2bo2_A	143	Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune Syst		8e-05

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69
          DVDEC LG + C    KC NT GS+ CQC +G+ G
Sbjct: 2  DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG 36

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69
          DVDEC LG + C    KC NT GS+ CQC +G+ G
Sbjct: 4  DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG 38

>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System Molecule, In Complex With Calcium. Length = 143

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 29  SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
           S + C DVDEC  G H C     C NT GSYSC+C+ G+
Sbjct: 89  SENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	4e-12
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-11
2bou_A	143	EGF-like module containing mucin-like hormone rece	7e-07
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	6e-09
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	2e-08
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	2e-08
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	3e-08
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	6e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	7e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	6e-04
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	4e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-05
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	8e-04
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	3e-06
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-05
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-05
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	3e-05
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	5e-04
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	1e-04
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	5e-04
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	6e-04

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 58.2 bits (140), Expect = 4e-12
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
              C    H C   A+C +    + C+C   + G+G+ 
Sbjct: 4  AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ 42

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 54.4 bits (131), Expect = 2e-11
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
           C DVDEC  G H C     C NT GSYSC+C+ G+    
Sbjct: 93  CQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH 131

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 42.9 bits (101), Expect = 7e-07
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 33 CPDVDECGL-GLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
          C D++EC       C K + C NT GSY C C  G+         K 
Sbjct: 41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKN 87

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 46.8 bits (112), Expect = 6e-09
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC 75
          C D DEC +G    +    C N  G + C C+ GF      +C
Sbjct: 41 CVDTDECSVGNPCGN--GTCKNVIGGFECTCEEGFEPGPMMTC 81

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 45.7 bits (109), Expect = 2e-08
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
            D+DEC     D  K  +C NT GSY C+C  G+   G  
Sbjct: 2  AVDMDECKE--PDVCKHGQCINTDGSYRCECPFGYILAGNE 40

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 45.4 bits (108), Expect = 2e-08
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
          D+DEC +    C    +C NT G + C+C  G+         
Sbjct: 2  DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKN 42

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 45.0 bits (107), Expect = 3e-08
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
          C D+DEC      C     C NT GSY C+C  G     +   
Sbjct: 43 CMDIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNISA 84

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 41.9 bits (99), Expect = 6e-07
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
          DVDEC L    C   A C N  G + C+C  G+  +   K+
Sbjct: 2  DVDECSLKPSICG-TAVCKNIPGDFECECPEGYRYNLKSKS 41

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 42.7 bits (101), Expect = 7e-07
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
           C D+DEC +    C  +  C NT GS+ CQC  G   D 
Sbjct: 104 CEDIDECEVFPGVCK-NGLCVNTRGSFKCQCPSGMTLDA 141

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 35.0 bits (81), Expect = 6e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
          D+DEC         +  C N+ GS+ C+C      D 
Sbjct: 3  DIDEC---ESSPCINGVCKNSPGSFICECSSESTLDP 36

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
             D+DEC      C    KC NT GS+ C+C  G++ + 
Sbjct: 119 LEDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNE 156

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 40.8 bits (96), Expect = 4e-06
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
          DV+EC            C NT GSY C C   F  + 
Sbjct: 2  DVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNP 36

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 5/43 (11%)

Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC 75
          C D         +C+ D +    +G  +C  + G      + C
Sbjct: 41 CVDTRSG-----NCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 34.6 bits (80), Expect = 8e-04
 Identities = 5/39 (12%), Positives = 9/39 (23%), Gaps = 2/39 (5%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
           C  + +       C        +     C    GF  + 
Sbjct: 78  CCSLGKAWG--TPCEMCPAVNTSEYKILCPGGEGFRPNP 114

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 24  EDARWSYSLCPDVDECGLGLHDCHKDAKCTN----THGSYSCQCKRGFHGDGKTSCT 76
           E A+    +C   + C    H+CHK A+C      +   Y C+C+ G+ GDG     
Sbjct: 90  EAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGE 146

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 33 CPDVDECGLGLHDCH---KDAKCTNTHGSYSC-QCKRGFHGDG 71
          C D+DEC L    C    K  +C NT   + C  C   + G+ 
Sbjct: 41 CEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQ 83

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 19/38 (50%), Positives = 23/38 (60%)

Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
            DVDEC LG + C    KC NT GS+ CQC +G+ G 
Sbjct: 2  AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 39

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 38.1 bits (89), Expect = 3e-05
 Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 2/44 (4%)

Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
              +EC      C     C +    Y C C  GF    +  C 
Sbjct: 26 AMGTNECLDNNGGC--SYVCNDLKIGYECLCPDGFQLVAQRRCE 67

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 34.6 bits (80), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
           C D+DEC      C     C N  G Y CQC+ GF      K 
Sbjct: 66  CEDIDECQDP-DTC--SQLCVNLEGGYKCQCEEGFQLDPHTKA 105

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 4/42 (9%), Positives = 13/42 (30%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
          + +   + +     + +       + C C  G     + +C 
Sbjct: 1  EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCE 42

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 33.6 bits (77), Expect = 5e-04
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)

Query: 35 DVDECGLGLHDCHKDAK------CTNTHGSYSCQCKRGF--HGDGKT 73
          D+DEC        +D +      C N  G Y C C+ G+    D  +
Sbjct: 3  DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS 49

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 34.7 bits (80), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 33  CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
           C D+DEC  G   C     C N  G++ C C       G+    
Sbjct: 77  CTDIDECENG-GFC--SGVCHNLPGTFECICGPDSALAGQIGTD 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.27
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.2
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.14
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.09
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.09
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.05
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.01
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.01
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.98
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.97
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	98.96
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.94
2vh0_B	134	Activated factor XA light chain; serine protease,	98.93
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.92
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.91
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.89
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.85
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.83
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.8
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.79
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.78
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.77
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.71
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.69
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.67
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.61
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.4
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.36
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	98.33
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.28
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.06
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.04
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	98.02
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.99
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	97.99
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.97
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.96
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	97.96
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.94
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.91
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.78
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.78
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.76
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.74
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	97.65
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.62
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.56
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.51
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.48
2wph_E	59	Coagulation factor IXA light chain; serine proteas	97.41
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.41
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	97.38
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.36
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	97.35
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.31
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.29
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	97.29
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.27
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.25
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	97.22
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	97.2
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.17
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.17
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.15
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	97.07
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.05
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	97.04
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.02
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	97.0
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.97
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.89
2wph_E	59	Coagulation factor IXA light chain; serine proteas	96.88
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	96.81
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	96.8
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	96.8
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	96.71
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	96.71
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	96.69
1ob1_C	99	Major merozoite surface protein; immune system, im	96.69
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	96.65
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	96.65
1szb_A	170	Mannose binding lectin-associated serine protease-	96.63
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	96.54
2vh0_B	134	Activated factor XA light chain; serine protease,	96.51
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.41
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	96.41
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.34
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	96.23
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.06
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.01
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.56
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.5
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	95.24
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	95.11
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	95.11
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	95.02
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	94.92
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	94.82
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	94.76
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	94.57
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	94.55
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	94.28
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	94.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.81
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	93.78
1szb_A	170	Mannose binding lectin-associated serine protease-	93.77
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	93.71
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	93.71
1nzi_A	159	Complement C1S component; calcium, innate immunity	93.31
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	93.29
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	92.31
1nzi_A	159	Complement C1S component; calcium, innate immunity	92.29
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	92.26
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	92.06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	91.77
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	91.75
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	91.53
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	91.36
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	91.09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.82
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	90.55
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	90.43
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	87.99
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	86.26
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	83.91
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	83.65
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.38
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	80.47

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.27  E-value=6.4e-12  Score=60.54  Aligned_cols=66  Identities=24%  Similarity=0.557  Sum_probs=52.9

Q ss_pred             cccc-cccccCCcceeecCCCCC--CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCCCce
Q psy9821           8 SCAV-AVAARHNISVYEEDARWS--YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC   75 (78)
Q Consensus         8 ~C~~-~~~~~~~~~~c~c~~g~~--~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c   75 (78)
                      .|.+ .|.+..++|.|.|++||.  |..|+++++|.. ..+|.. +.|++..++|.|.|+.||.+.....|
T Consensus        13 ~C~~g~C~n~~g~y~C~C~~Gy~~~g~~C~dideC~~-~~~C~~-~~C~n~~g~y~C~C~~G~~g~~~~~C   81 (82)
T 1emn_A           13 VCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSV-GNPCGN-GTCKNVIGGFECTCEEGFEPGPMMTC   81 (82)
T ss_dssp             SCSSSEECCCSSCCCEECCTTEEEETTEEEECCGGGT-CCTTSS-SCEEECSSSEEECCSSSSCCCSSSCC
T ss_pred             CcCCCEEEecCCCEEEECCCCeECCCCccCCcccccC-CCCCCC-CEeECCCCCEEeECCCCeEeCCCCcc
Confidence            4443 566778999999999996  889999999974 457864 58999999999999999987654333

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.20  E-value=2.4e-11  Score=63.62  Aligned_cols=56  Identities=23%  Similarity=0.525  Sum_probs=48.9

Q ss_pred             ccCCcceeecCCCCCCCCCC-CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCC
Q psy9821          15 ARHNISVYEEDARWSYSLCP-DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGK   72 (78)
Q Consensus        15 ~~~~~~~c~c~~g~~~~~C~-~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~   72 (78)
                      +..++|.|.|++||+|..|+ ++++|.  ..+|..++.|++..++|.|.|+.||.++..
T Consensus        75 ~~~~~~~C~C~~G~~G~~C~~~i~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~G~~c  131 (143)
T 4d90_A           75 DTFIGYVCKCPRGFNGIHCQHNINECE--VEPCKNGGICTDLVANYSCECPGEFMGRNC  131 (143)
T ss_dssp             TEECCEEEECCTTEESTTSCEECCTTT--TCCSCTTCEEEEETTEEEEECCTTCBSTTS
T ss_pred             CCCCCeEeECcCCCcCCCcccCCCcCC--CCCCCCCCEeECCCCCeEeECCCCCccCCc
Confidence            45678999999999999996 899997  567888899999999999999999987543

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.14  E-value=1.2e-11  Score=60.07  Aligned_cols=59  Identities=27%  Similarity=0.503  Sum_probs=49.6

Q ss_pred             cccccCCcceeecCCCCC-----CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821          12 AVAARHNISVYEEDARWS-----YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG   71 (78)
Q Consensus        12 ~~~~~~~~~~c~c~~g~~-----~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~   71 (78)
                      .|.+..++|.|.|++||.     +..|+++++|...+..|. .+.|++..++|.|.|+.||.+..
T Consensus        17 ~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~~~   80 (86)
T 1lmj_A           17 QCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSP   80 (86)
T ss_dssp             CEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCCCS
T ss_pred             EEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCC-CCEeEcCCCCEEEECcCCcccCC
Confidence            566778899999999995     778999999976555575 47999999999999999998653

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.09  E-value=1.2e-11  Score=62.37  Aligned_cols=62  Identities=27%  Similarity=0.553  Sum_probs=24.7

Q ss_pred             CcccccccccCCcceeecCCCCCC---CCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821           7 DSCAVAVAARHNISVYEEDARWSY---SLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG   71 (78)
Q Consensus         7 ~~C~~~~~~~~~~~~c~c~~g~~~---~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~   71 (78)
                      ..|.+.|.+..++|.|.|++||.+   ..|+++++|.. ..+|.  ..|++..++|.|.|+.||.+..
T Consensus        37 ~~C~~~C~n~~g~y~C~C~~Gy~g~~g~~C~dideC~~-~~~C~--~~C~n~~gsy~C~C~~Gy~~~~  101 (107)
T 2w2n_E           37 GGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDP  101 (107)
T ss_dssp             GGCSSEEECCSBSCEEECCTTCEEETTTEEEC------------------------------------
T ss_pred             CCCCCEeEeCCCCeEEECCCCccccCCCccccccccCC-CCCcC--CeeecCCCCEEEECCCCceECC
Confidence            456667888899999999999975   78999999973 45785  6899999999999999998643

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.09  E-value=3.9e-11  Score=62.97  Aligned_cols=60  Identities=32%  Similarity=0.612  Sum_probs=50.3

Q ss_pred             cccccCCcceeecCCCCCCC------------CCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821          12 AVAARHNISVYEEDARWSYS------------LCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG   71 (78)
Q Consensus        12 ~~~~~~~~~~c~c~~g~~~~------------~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~   71 (78)
                      .|.+..++|.|.|++||.+.            .|+++++|....++|...+.|++..++|.|.|+.||.+..
T Consensus        60 ~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~  131 (143)
T 2bou_A           60 DCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH  131 (143)
T ss_dssp             EEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCT
T ss_pred             EEEcCCCCeEeECCCCcccCcCccccccCCCCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCC
Confidence            45566789999999999654            6788899976567898789999999999999999998653

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.05  E-value=1e-10  Score=61.80  Aligned_cols=57  Identities=16%  Similarity=0.279  Sum_probs=47.6

Q ss_pred             cccccCCcceeecCCCCCCCCCCCcccCCCCCCCCCCCCEE-EeCCCCeEeeCCCCceeC
Q psy9821          12 AVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKC-TNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        12 ~~~~~~~~~~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C-~~~~~~~~c~C~~g~~~~   70 (78)
                      +|.+..++|.|.|++||+|..|.++++|......|.  ..| ++..++|.|.|+.||...
T Consensus        61 ~C~~~~~~y~C~C~~G~~G~~C~~~deC~~~~~~C~--~~C~~n~~g~y~C~C~~Gy~l~  118 (146)
T 1x7a_L           61 LCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCK--QFCKTGADSKVLCSCTTGYRLA  118 (146)
T ss_dssp             EEEECSSCEEEECCSSEESTTTCEECCTTSGGGSCS--SBCCCCSSSCCCCBCCTTEEEC
T ss_pred             EeECCCCCEEEecCCCCcCCcCCCCccccCCCCCCc--CCCCCCCCCCEEeEcCCCcEeC
Confidence            345667889999999999999998899986555675  389 899999999999999843

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.01  E-value=4.9e-10  Score=58.76  Aligned_cols=61  Identities=33%  Similarity=0.678  Sum_probs=47.8

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCC---------CCCCCcccCCCCC-CCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSY---------SLCPDVDECGLGL-HDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~---------~~C~~~~~c~~~~-~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      |.++++|.       ..|.|.|++||+|         ..|+++++|.... .+|.....|++..++|.|.|+.||.+.
T Consensus         9 C~~~~~C~-------~~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~   79 (143)
T 2bou_A            9 CPQDSSCV-------NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPV   79 (143)
T ss_dssp             CCTTEEES-------SSSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEET
T ss_pred             CCCCCEEc-------CCCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccC
Confidence            55555554       2388999999976         6898999998543 378877899999999999999999875

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.01  E-value=9.5e-10  Score=55.81  Aligned_cols=62  Identities=19%  Similarity=0.469  Sum_probs=47.3

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCCCc---ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCPDV---DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~~---~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      |.++++|    .+..++|.|.|++||+|..|+.+   ++|......|.  ..|++..++|.|.|+.||.+.
T Consensus        22 C~~~g~C----~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~--~~C~n~~g~y~C~C~~G~~~~   86 (114)
T 1aut_L           22 CCGHGTC----IDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT--HYCLEEVGWRRCSCAPGYKLG   86 (114)
T ss_dssp             TTTSEEE----CCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCS--SEEEECSSSEEEECCTTEEEC
T ss_pred             CCCcCCC----CCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCC--CEeECCCCCEEeECCCCeeEC
Confidence            4444444    45678899999999999999764   35764344564  489999999999999999853

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.00  E-value=1e-09  Score=57.15  Aligned_cols=55  Identities=25%  Similarity=0.579  Sum_probs=36.1

Q ss_pred             ccccCCcceeecCCCCCCCCCC-CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          13 VAARHNISVYEEDARWSYSLCP-DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~~C~-~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      |.+..++|.|.|++||+|..|. ++++|.  ..+|...+.|++..++|.|.|+.||.+
T Consensus        21 C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~G   76 (135)
T 2vj3_A           21 CINTLGSFECQCLQGYTGPRCEIDVNECV--SNPCQNDATCLDQIGEFQCICMPGYEG   76 (135)
T ss_dssp             EEECSSSEEEECCTTEESTTSCEECCTTT--TCCCCSSCEEEECSSCEEEECCTTEES
T ss_pred             eECCCCCEEEECCCCCcCCcccccCccCC--CCCCCCCCEEeCCCCCceeeCCCCCcC
Confidence            3445566777777777777773 566665  345665667777777777777777664

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.98  E-value=2.7e-09  Score=62.03  Aligned_cols=69  Identities=22%  Similarity=0.499  Sum_probs=52.9

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC-CcccCCCC-CCCCCCCCEEEeCCCCeEeeCCCCceeCC-CCceee
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP-DVDECGLG-LHDCHKDAKCTNTHGSYSCQCKRGFHGDG-KTSCTK   77 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~-~~~~c~~~-~~~c~~~~~C~~~~~~~~c~C~~g~~~~~-~~~c~~   77 (78)
                      |.++.+|.    +..++|.|.|++||.|..|+ ++++|... ..+|..  .|.+..++|.|.|+.||.+.. ...|.+
T Consensus        13 C~~~g~C~----~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~~~~~~C~~   84 (317)
T 3h5c_B           13 CLHNGSCQ----DSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVP   84 (317)
T ss_dssp             CTTTCCCC----CCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECCTTSSCCEE
T ss_pred             CCCCCEeE----CCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEecccccccccccccccc
Confidence            45555553    55678999999999999997 99999752 367873  999999999999999998643 233543

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.97  E-value=2.5e-10  Score=62.84  Aligned_cols=56  Identities=20%  Similarity=0.345  Sum_probs=25.9

Q ss_pred             cccccCCcceeecCCCCCCCCCCC-c-ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          12 AVAARHNISVYEEDARWSYSLCPD-V-DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        12 ~~~~~~~~~~c~c~~g~~~~~C~~-~-~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      +|.+..++|.|.|++||.|..|.. + ++|......|.  ..|++..++|.|.|+.||..
T Consensus        55 ~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~--~~C~n~~gsy~C~C~~Gy~l  112 (195)
T 1nfu_B           55 KCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCD--QFCHEEQNSVVCSCARGYTL  112 (195)
T ss_dssp             --------------------------CCGGGTGGGGCS--SEEEEETTEEEEECCTTEEE
T ss_pred             EeECCCCCeeEeCCCCceeccccccccccccCCCCCCC--CEeECCCCCeEEECCCCcee
Confidence            345667889999999999999976 5 78976556676  49999999999999999984

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=98.96  E-value=1.7e-09  Score=56.26  Aligned_cols=56  Identities=20%  Similarity=0.508  Sum_probs=47.8

Q ss_pred             ccccCCcceeecCCCCCCCCCC-CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          13 VAARHNISVYEEDARWSYSLCP-DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~~C~-~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +.+..++|.|.|++||.|..|. ++++|.  ..+|...+.|++..+.|.|.|+.||.+.
T Consensus        59 C~~~~g~~~C~C~~G~~G~~C~~~~~~C~--~~~C~~~g~C~~~~g~~~C~C~~G~~G~  115 (135)
T 2vj3_A           59 CLDQIGEFQCICMPGYEGVHCEVNTDECA--SSPCLHNGRCLDKINEFQCECPTGFTGH  115 (135)
T ss_dssp             EEECSSCEEEECCTTEESSSSCEECCTTT--TCCSTTTCEEEECSSCEEEECCTTEESS
T ss_pred             EeCCCCCceeeCCCCCcCCcceecCCccc--CCCcCCCCEeECCCCCeEEECCCCCcCC
Confidence            4456688999999999999995 788887  4578878999999999999999999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.94  E-value=3.9e-10  Score=67.39  Aligned_cols=61  Identities=28%  Similarity=0.556  Sum_probs=53.1

Q ss_pred             CcccccccccCCcceeecCCCCC---CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821           7 DSCAVAVAARHNISVYEEDARWS---YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus         7 ~~C~~~~~~~~~~~~c~c~~g~~---~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..|.+.|.+..++|.|.|++||.   +..|+++++|.. ..+|.  ..|.+..++|.|.|..||...
T Consensus         8 ~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~dideC~~-~~~C~--~~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L            8 GGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             GGCSSEEEECSSSEEEECCTTEEECSSSCEEECCCCST-TSSCS--SCCBCCSSSCBCCCCTTCCCC
T ss_pred             CCCCCEeECCCCCeEEECCCCCCcCCCCcccCchhhhc-cCCCC--CccCCCccceeeecccccccc
Confidence            46788888999999999999996   889999999984 56786  489999999999999999854

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.93  E-value=4.5e-10  Score=58.49  Aligned_cols=56  Identities=20%  Similarity=0.345  Sum_probs=25.9

Q ss_pred             ccccCCcceeecCCCCCCCCCCC-c-ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          13 VAARHNISVYEEDARWSYSLCPD-V-DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~~C~~-~-~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      |.+..++|.|.|++||+|..|.. + ++|......|.  ..|++..++|.|.|+.||...
T Consensus        56 C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~--~~C~~~~g~y~C~C~~Gy~l~  113 (134)
T 2vh0_B           56 CKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLA  113 (134)
T ss_dssp             -------------------------CCGGGTGGGGCS--SEEEEETTEEEEECCTTEEEC
T ss_pred             cccCCCCEEeeCCCCccCCccccCCCCccccCCCCCC--CEeECCCCCEEEECCCCcEEC
Confidence            44556789999999999999976 5 77875445676  489999999999999999843

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.92  E-value=5.6e-10  Score=66.41  Aligned_cols=62  Identities=24%  Similarity=0.554  Sum_probs=15.9

Q ss_pred             CCcccccccccCCcceeecCCCCC----CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821           6 SDSCAVAVAARHNISVYEEDARWS----YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus         6 ~~~C~~~~~~~~~~~~c~c~~g~~----~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +..|.+.|.+..++|.|.|++||.    +..|+++++|. ...+|.  ..|.+..++|.|.|+.||...
T Consensus        10 ~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~-~~~~C~--~~C~~~~g~~~C~C~~g~~l~   75 (386)
T 3v65_B           10 NGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECA-EEGYCS--QGCTNSEGAFQCWCEAGYELR   75 (386)
T ss_dssp             -------------------------------------------CCT--TEEC-----CCEECCTTEEEC
T ss_pred             CCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeC-CcCccc--CcCCCCCCCCeEEECCCceEc
Confidence            346888888888899999999996    88999999997 356786  569999999999999999843

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.91  E-value=6e-10  Score=54.10  Aligned_cols=62  Identities=29%  Similarity=0.575  Sum_probs=48.4

Q ss_pred             cccccCCcceeecCCCCC----CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeC--CCCceeCC-CCceee
Q psy9821          12 AVAARHNISVYEEDARWS----YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQC--KRGFHGDG-KTSCTK   77 (78)
Q Consensus        12 ~~~~~~~~~~c~c~~g~~----~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C--~~g~~~~~-~~~c~~   77 (78)
                      .|.+..++|.|.|++||.    +..|+++++|.  ..+|.  ..|++..++|.|.|  ..||.... ...|.+
T Consensus        17 ~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~--~~~C~--~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~d   85 (87)
T 1z6c_A           17 VCKNIPGDFECECPEGYRYNLKSKSCEDIDECS--ENMCA--QLCVNYPGGYTCYCDGKKGFKLAQDQKSCEV   85 (87)
T ss_dssp             SCCCBTTBCCCSSSTTCEEETTTTEEECCCHHH--HSCCS--SEECCCSSSCCEECCSSSCCBCCTTSSSCBC
T ss_pred             EeECCCCCEEEECCCCceECCCCCcCCCcCeeC--CCCCC--CEEEccCCCEEEECCCCcCCcccCCCCcceE
Confidence            456777899999999996    78899999996  45786  78999999999999  46776433 234654

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.89  E-value=5.3e-09  Score=65.88  Aligned_cols=65  Identities=25%  Similarity=0.571  Sum_probs=52.5

Q ss_pred             CCCCCcccccccccC-Cccee-ecCCCCCC--CCCCCcccCCCCCCCCCCCC---EEEeCCCCeEee-CCCCceeCC
Q psy9821           3 CFISDSCAVAVAARH-NISVY-EEDARWSY--SLCPDVDECGLGLHDCHKDA---KCTNTHGSYSCQ-CKRGFHGDG   71 (78)
Q Consensus         3 c~~~~~C~~~~~~~~-~~~~c-~c~~g~~~--~~C~~~~~c~~~~~~c~~~~---~C~~~~~~~~c~-C~~g~~~~~   71 (78)
                      |.+++.|.    +.. ++|.| .|++||+|  ..|+++++|...++.|....   .|++..++|.|. |+.||.+..
T Consensus        11 C~~gg~C~----n~~~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~   83 (634)
T 1yo8_A           11 CFPGAQCS----SFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQ   83 (634)
T ss_dssp             SCTTCCEE----ECTTSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECC
T ss_pred             CCCCCEEe----cCCCCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCc
Confidence            55555554    444 34999 99999986  79999999986666698777   899999999998 999998654

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.85  E-value=6.3e-10  Score=56.81  Aligned_cols=59  Identities=22%  Similarity=0.465  Sum_probs=48.3

Q ss_pred             cccccccccCCcceeecCCCCC---CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821           8 SCAVAVAARHNISVYEEDARWS---YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus         8 ~C~~~~~~~~~~~~c~c~~g~~---~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      .|.+.+.+ .++|.|.|++||.   +..|+++++|.. ..+|  ...|++..++|.|.|+.||.+.
T Consensus        50 ~C~~~C~~-~~~y~C~C~~Gy~~~~g~~C~dideC~~-~~~C--~~~C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           50 ACPADCDP-NTQASCECPEGYILDDGFICTDIDECEN-GGFC--SGVCHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             EEECEECT-TSTTCEECCTTEEEETTTEEEECCHHHH-CSSC--SSEEEECSSSEEEEECSSSSCE
T ss_pred             CCCCcccC-CCCeEeECCCCccCCCCCccccccccCC-CCCC--cCeEEeCCCCEEEECCCCCccC
Confidence            44455555 4789999999997   888999999975 3678  5899999999999999999754

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.83  E-value=4.1e-10  Score=61.31  Aligned_cols=67  Identities=25%  Similarity=0.497  Sum_probs=52.6

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCC-----CCCCCc--ccCCCCCCCC-CCCCEEEeCCCCeEeeCCCCceeCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSY-----SLCPDV--DECGLGLHDC-HKDAKCTNTHGSYSCQCKRGFHGDGK   72 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~-----~~C~~~--~~c~~~~~~c-~~~~~C~~~~~~~~c~C~~g~~~~~~   72 (78)
                      |.+++.|.+.+.+..++|.|.|++||.+     ..|+++  ++|.   .+| .....|++..++|.|.|+.||.+...
T Consensus        99 C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~---~~C~~~~~~C~n~~g~y~C~C~~G~~g~~~  173 (186)
T 1z1y_A           99 CGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ---LXCNTDNEVCXNVEGVYXCQCMEGFTFDXE  173 (186)
T ss_dssp             CCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC---CCCCTTTEEEEEETTEEEEEECTTCEEETT
T ss_pred             CCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc---ccccccCcceecCCCCeeeECCCCCccCcc
Confidence            5555666655557778899999999976     778765  6786   278 77789999999999999999986543

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.80  E-value=5.9e-09  Score=65.68  Aligned_cols=64  Identities=27%  Similarity=0.565  Sum_probs=52.6

Q ss_pred             cccccCCcceee-cCCCCCCCC---------------CCCcccCCCCCCCCCCCCEEEeCC----CCeEeeCCCCceeCC
Q psy9821          12 AVAARHNISVYE-EDARWSYSL---------------CPDVDECGLGLHDCHKDAKCTNTH----GSYSCQCKRGFHGDG   71 (78)
Q Consensus        12 ~~~~~~~~~~c~-c~~g~~~~~---------------C~~~~~c~~~~~~c~~~~~C~~~~----~~~~c~C~~g~~~~~   71 (78)
                      +|.+..++|.|. |++||.|..               |+.+++|....++|.....|++..    ++|.|.|+.||.+++
T Consensus        62 ~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG  141 (634)
T 1yo8_A           62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDG  141 (634)
T ss_dssp             CEEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESS
T ss_pred             ceeeccCceecccCCCCcccCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccC
Confidence            466778899998 999997554               667899986667898888999998    999999999999865


Q ss_pred             CCcee
Q psy9821          72 KTSCT   76 (78)
Q Consensus        72 ~~~c~   76 (78)
                      .. |.
T Consensus       142 ~~-Ce  145 (634)
T 1yo8_A          142 LI-CG  145 (634)
T ss_dssp             SS-EE
T ss_pred             cc-cc
Confidence            54 53

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.79  E-value=1.5e-08  Score=52.96  Aligned_cols=64  Identities=25%  Similarity=0.580  Sum_probs=44.0

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCCC-------------cccCCCCCCCCCCCCEEE-------eCCCCeEee
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCPD-------------VDECGLGLHDCHKDAKCT-------NTHGSYSCQ   62 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~-------------~~~c~~~~~~c~~~~~C~-------~~~~~~~c~   62 (78)
                      |.++++|....  ..++|.|.|++||+|..|+.             +++|.  ..+|..+..|+       +..++|.|.
T Consensus         8 C~~~g~C~~~~--~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~--~~~C~~~g~C~~~~~~~~~~~~~~~C~   83 (143)
T 4d90_A            8 CENGGICLPGL--ADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCT--PNPCHNGGTCEISEAYRGDTFIGYVCK   83 (143)
T ss_dssp             CGGGCEEEC-------CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTS--SCCCCTTCEEEECCCEETTEECCEEEE
T ss_pred             CCCCCEeeCCC--CCCCEEeECCCCCCCCCCccCccccccccccccCCcCC--CCCCCCCCEecCCCccccCCCCCeEeE
Confidence            44555554211  12679999999999998864             34454  45687788998       566799999


Q ss_pred             CCCCceeC
Q psy9821          63 CKRGFHGD   70 (78)
Q Consensus        63 C~~g~~~~   70 (78)
                      |+.||.+.
T Consensus        84 C~~G~~G~   91 (143)
T 4d90_A           84 CPRGFNGI   91 (143)
T ss_dssp             CCTTEEST
T ss_pred             CcCCCcCC
Confidence            99999753

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.78  E-value=7.4e-09  Score=54.34  Aligned_cols=56  Identities=16%  Similarity=0.310  Sum_probs=42.6

Q ss_pred             cccccCCcceeecCCCCCCCCCCC-cccC---CCCCCCCCCCCEEEeCCC-CeEeeCCCCcee
Q psy9821          12 AVAARHNISVYEEDARWSYSLCPD-VDEC---GLGLHDCHKDAKCTNTHG-SYSCQCKRGFHG   69 (78)
Q Consensus        12 ~~~~~~~~~~c~c~~g~~~~~C~~-~~~c---~~~~~~c~~~~~C~~~~~-~~~c~C~~g~~~   69 (78)
                      +|.+..++|.|.|++||+|..|.. ++++   ....+.|.  ..|++..+ +|.|.|+.||..
T Consensus        60 ~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~--~~C~~~~g~~y~C~C~~Gy~l  120 (142)
T 2c4f_L           60 SCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSL  120 (142)
T ss_dssp             EEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCS--SEEECCTTSCCEEECCTTEEE
T ss_pred             EEeCCCCCEEeeCCCCccCCccccCccccccccCCCCCcc--CEeECCCCCCEEEECCCCceE
Confidence            345667889999999999999975 5554   22223343  38999999 999999999984

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.77  E-value=2.8e-08  Score=48.59  Aligned_cols=54  Identities=22%  Similarity=0.576  Sum_probs=45.3

Q ss_pred             ccccCCcceeecCCCCCCCCCC--CcccCCCCCCCCCCCCEEEeCC--CCeEeeCCCCceeC
Q psy9821          13 VAARHNISVYEEDARWSYSLCP--DVDECGLGLHDCHKDAKCTNTH--GSYSCQCKRGFHGD   70 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~~C~--~~~~c~~~~~~c~~~~~C~~~~--~~~~c~C~~g~~~~   70 (78)
                      +.+....|.|.|++||+  .|+  ++++|.  ..+|.+++.|++..  +.|.|.|+.||.+.
T Consensus        25 C~n~~~~y~C~C~~G~~--~C~~~~~~~C~--~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~   82 (91)
T 1tpg_A           25 VLRSNRVEYCWCNSGRA--QCHSVPVKSCS--EPRCFNGGTCQQALYFSDFVCQCPEGFAGK   82 (91)
T ss_dssp             CSSSSCEEEEECSSSCC--BCCEECEEECS--SCCSCTTCEEEEESSSSCEEEECCTTCBSS
T ss_pred             cccCCCCcEeECCCCCc--ccccCcCCccc--CCCCCCCCEeecCCCCCCeEeECCCCCcCC
Confidence            45567789999999997  785  688887  46798889999987  89999999999864

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.71  E-value=1.5e-09  Score=59.05  Aligned_cols=59  Identities=17%  Similarity=0.370  Sum_probs=49.2

Q ss_pred             ccccCCcceeecCCCCCCC---CCCCcccCCCC--CCCCCCCCEEEeCC-----CCeEeeCCCCceeCC
Q psy9821          13 VAARHNISVYEEDARWSYS---LCPDVDECGLG--LHDCHKDAKCTNTH-----GSYSCQCKRGFHGDG   71 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~---~C~~~~~c~~~--~~~c~~~~~C~~~~-----~~~~c~C~~g~~~~~   71 (78)
                      |.+..++|.|.|++||.+.   .|+++++|...  ..+|...+.|++..     ++|.|.|+.||.+..
T Consensus        18 C~~~~g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~   86 (186)
T 1z1y_A           18 LVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE   86 (186)
T ss_dssp             EEECSSCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET
T ss_pred             eECCCCCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC
Confidence            5566788999999999755   89889999854  46787778999998     899999999998753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.69  E-value=2.8e-08  Score=63.14  Aligned_cols=61  Identities=28%  Similarity=0.556  Sum_probs=52.1

Q ss_pred             CcccccccccCCcceeecCCCCC---CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821           7 DSCAVAVAARHNISVYEEDARWS---YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus         7 ~~C~~~~~~~~~~~~c~c~~g~~---~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..|.+.|.+..++|.|.|++||.   +..|+++++|.. ...|.  ..|++..++|.|.|+.||.+.
T Consensus       302 ~~C~~~C~~~~~~~~C~C~~G~~~~~~~~C~dideC~~-~~~C~--~~C~n~~g~y~C~C~~G~~~~  365 (699)
T 1n7d_A          302 GGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLD  365 (699)
T ss_dssp             TTSCTTCCCCTTCCCCCCCSSSCCCSSSCCCCCCCCSS-SSSCT--TTCCBCSSCBCCCCCSSCBCC
T ss_pred             cCcCCCcccCCCCcEEeCCCCeEcCCCCcccCccccCC-CCccc--cccccCCCCeeeeeecccccC
Confidence            45777888889999999999996   788999999974 45675  689999999999999999854

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.67  E-value=1.4e-08  Score=65.37  Aligned_cols=61  Identities=28%  Similarity=0.561  Sum_probs=51.7

Q ss_pred             CcccccccccCCcceeecCCCC---CCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821           7 DSCAVAVAARHNISVYEEDARW---SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus         7 ~~C~~~~~~~~~~~~c~c~~g~---~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..|.+.|.+..++|.|.|++||   .+..|+++++|.. +..|.  ..|++..++|.|.|+.||...
T Consensus       320 ~~C~~~C~~~~~~y~C~C~~Gy~l~~g~~C~dideC~~-~~~C~--~~C~n~~gsy~C~C~~Gy~l~  383 (791)
T 3m0c_C          320 GGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLD  383 (791)
T ss_dssp             GGCSSEEEECSBSEEEECCTTCEEETTTEEECCCCCSS-SSSCT--TTCCBCSSCBCCCCCSSEECC
T ss_pred             cCccccccCCCCCcccCCCCCCccCCCCccccCcccCC-CCCCC--CeeecCCCCceeecCCCCEeC
Confidence            3566678888899999999999   5889999999973 45674  689999999999999999864

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.61  E-value=4.5e-09  Score=55.32  Aligned_cols=51  Identities=31%  Similarity=0.597  Sum_probs=43.8

Q ss_pred             ceeecCCCC---CCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821          20 SVYEEDARW---SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG   71 (78)
Q Consensus        20 ~~c~c~~g~---~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~   71 (78)
                      +.|.|++||   .|..|+++++|...+++|.. ..|++..++|.|.|+.||.+..
T Consensus        88 ~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A           88 VDPICGKGYSRIKGTQCEDIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGMTLDA  141 (147)
T ss_dssp             CCTTTCTTEEEEETTEEEECCHHHHSTTCSSS-SEEEEETTEEEEECCTTCCBCT
T ss_pred             CcccCCCccccCCCCccCccccccCCCCCCCC-CEEECCCCCEEeeCCCCCccCC
Confidence            678899999   48899999999865677874 4999999999999999998764

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.40  E-value=2.9e-07  Score=49.50  Aligned_cols=52  Identities=29%  Similarity=0.742  Sum_probs=44.1

Q ss_pred             CcceeecCCCCCCCCCC-CcccCCCCCCCCCCCCEEEeC-CCCeEeeCCCCceeC
Q psy9821          18 NISVYEEDARWSYSLCP-DVDECGLGLHDCHKDAKCTNT-HGSYSCQCKRGFHGD   70 (78)
Q Consensus        18 ~~~~c~c~~g~~~~~C~-~~~~c~~~~~~c~~~~~C~~~-~~~~~c~C~~g~~~~   70 (78)
                      ..+.|+|++||+|..|+ ++++|.. ..+|..++.|++. .++|.|.|+.||.+.
T Consensus       112 ~~~~C~C~~G~~G~~C~~~~~~C~~-~~~C~~~g~C~~~~~~~~~C~C~~G~~G~  165 (169)
T 2vj2_A          112 EPWQCLCETNWGGQLCDKDLNYCGT-HQPCLNGGTCSNTGPDKYQCSCPEGYSGP  165 (169)
T ss_dssp             STTCCEECTTEETTTTCEESCHHHH-TCCCCTTCEEEECSTTCEEEECCTTCCST
T ss_pred             CCCEEeCCCCCCCCcccCCCCCCCC-CCCCCCCCEEcCCCCCCcEeECCCCCcCc
Confidence            56899999999999996 7888863 3578888999996 789999999999864

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.36  E-value=3.1e-08  Score=52.84  Aligned_cols=52  Identities=27%  Similarity=0.478  Sum_probs=38.2

Q ss_pred             cceeecCC--CCCC----CCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821          19 ISVYEEDA--RWSY----SLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG   71 (78)
Q Consensus        19 ~~~c~c~~--g~~~----~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~   71 (78)
                      +|.|.|++  ||.+    ..|+++++|...+++|.. +.|++..++|.|.|+.||.+..
T Consensus        99 ~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g~C~n~~gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A           99 EYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINTFGSFQCRCPTGYYLNE  156 (162)
T ss_dssp             HHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-SEEEECSSCEEEECCTTCCBCT
T ss_pred             CceeECCCCCCcccCCCCCccCccccccCCCCCcCC-CEeEcCCCCEEeeCCCCccCCC
Confidence            34455554  5643    356788999755567864 6999999999999999998754

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.33  E-value=9.9e-07  Score=41.23  Aligned_cols=15  Identities=33%  Similarity=0.911  Sum_probs=9.6

Q ss_pred             CCCCceeCCCCceee
Q psy9821          63 CKRGFHGDGKTSCTK   77 (78)
Q Consensus        63 C~~g~~~~~~~~c~~   77 (78)
                      |+.||...+...|+|
T Consensus        57 C~~Gy~~~~~~~C~D   71 (71)
T 2kl7_A           57 CPPGYEPDDQDSCVD   71 (71)
T ss_dssp             SCTTEEEECCCCSCC
T ss_pred             CCCCeeeCCCCcccC
Confidence            888887655434654

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.28  E-value=9.9e-08  Score=48.59  Aligned_cols=68  Identities=18%  Similarity=0.388  Sum_probs=45.8

Q ss_pred             CCccccccccc-CCcceeecCCCCCCCCCCCcccCCC--CCCCCCCCCEEEeCCCCeEeeCCCCceeCCCCceee
Q psy9821           6 SDSCAVAVAAR-HNISVYEEDARWSYSLCPDVDECGL--GLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK   77 (78)
Q Consensus         6 ~~~C~~~~~~~-~~~~~c~c~~g~~~~~C~~~~~c~~--~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c~~   77 (78)
                      ...|.++|.+. .++|.|.|++||.+..+ ++++|..  ...+|.  ..|++ .++|.|.|+.||.+.....|.+
T Consensus         9 ~~pC~~~C~~~~~g~y~C~C~~Gy~g~~~-~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g~~C~d   79 (118)
T 1dx5_I            9 RANCEYQCQPLDQTSYLCVCAEGFAPIPH-EPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDGFICTD   79 (118)
T ss_dssp             GCCCSSEEEECSSSCEEEECCTTEEEETT-EEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETTTEEEE
T ss_pred             CCCCCCCCCCCCCCCEEeECCCCccccCC-CCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCCCcccc
Confidence            34677778888 89999999999976543 2334432  133443  67877 5889999999998543223543

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.06  E-value=8.2e-06  Score=33.55  Aligned_cols=34  Identities=35%  Similarity=0.860  Sum_probs=28.1

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ++++|.  ..+|..++.|++..++|.|.|+.||.+.
T Consensus         2 d~d~C~--~~pC~ngg~C~~~~~~~~C~C~~G~~G~   35 (39)
T 1edm_B            2 DGDQCE--SNPCLNGGSCKDDINSYECWCPFGFEGK   35 (39)
T ss_dssp             CCCTTT--TCCCCTTCEEEEETTEEEEECCTTCCST
T ss_pred             ccccCC--CCCCCCCCEeEcCCCceEeECCCCCcCC
Confidence            456676  4678888999999999999999999764

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.04  E-value=5.4e-06  Score=36.88  Aligned_cols=38  Identities=24%  Similarity=0.515  Sum_probs=29.0

Q ss_pred             CCC-CCcccCCCCCCCCCCCCEEE-----eCCCCeEeeCCCCceeC
Q psy9821          31 SLC-PDVDECGLGLHDCHKDAKCT-----NTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        31 ~~C-~~~~~c~~~~~~c~~~~~C~-----~~~~~~~c~C~~g~~~~   70 (78)
                      ..| .++++|.  ..+|.++++|.     +..+.|.|.|+.+|.+.
T Consensus         2 ~~c~~~~~eC~--s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~   45 (55)
T 3u7u_G            2 TSHLVKCAEKE--KTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD   45 (55)
T ss_dssp             -CCEEECCSTT--TTTSCTTCEEEEECCC--CCCEEEEECTTEEST
T ss_pred             CCCcccCCCCc--CCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCC
Confidence            445 5678887  67899999995     45678999999999875

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=98.02  E-value=1.5e-06  Score=50.30  Aligned_cols=42  Identities=24%  Similarity=0.782  Sum_probs=33.3

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCCCceee
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK   77 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c~~   77 (78)
                      ++++|....+.|.....|.|+.++|.|.|..||.+++.. |.+
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~-C~d   45 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVA   45 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSS-EEE
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCc-CCC
Confidence            567887656788877899999999999999999988876 765

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.99  E-value=1.4e-06  Score=38.20  Aligned_cols=36  Identities=6%  Similarity=0.065  Sum_probs=29.9

Q ss_pred             CCCcccccccccCCcceeecCCCC----CCCCCCCcccCC
Q psy9821           5 ISDSCAVAVAARHNISVYEEDARW----SYSLCPDVDECG   40 (78)
Q Consensus         5 ~~~~C~~~~~~~~~~~~c~c~~g~----~~~~C~~~~~c~   40 (78)
                      ++..|.+.|.+..++|.|.|++||    ++..|.+++++.
T Consensus         4 ~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~p   43 (51)
T 1kig_L            4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP   43 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSSC
T ss_pred             CCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCccc
Confidence            456799999999999999999999    367888877654

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=97.99  E-value=1.1e-05  Score=38.46  Aligned_cols=38  Identities=39%  Similarity=0.833  Sum_probs=30.8

Q ss_pred             CCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821          32 LCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG   71 (78)
Q Consensus        32 ~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~   71 (78)
                      .|.++++|.. ..+|.. +.|++..++|.|.|+.||.+.+
T Consensus         1 sC~dideC~~-~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g   38 (82)
T 1emn_A            1 SAVDMDECKE-PDVCKH-GQCINTDGSYRCECPFGYILAG   38 (82)
T ss_dssp             CCCCCCSSSS-TTSCSS-SEECCCSSCCCEECCTTEEEET
T ss_pred             CCCccccCCC-CCCcCC-CEEEecCCCEEEECCCCeECCC
Confidence            3678899975 467864 7999999999999999997543

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.97  E-value=1.7e-06  Score=38.16  Aligned_cols=36  Identities=8%  Similarity=0.076  Sum_probs=30.2

Q ss_pred             CCCcccccccccCC-cceeecCCCC----CCCCCCCcccCC
Q psy9821           5 ISDSCAVAVAARHN-ISVYEEDARW----SYSLCPDVDECG   40 (78)
Q Consensus         5 ~~~~C~~~~~~~~~-~~~c~c~~g~----~~~~C~~~~~c~   40 (78)
                      ++..|++.|.+..+ +|.|.|++||    ++..|.+++++.
T Consensus         5 ~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec~   45 (53)
T 2bz6_L            5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP   45 (53)
T ss_dssp             GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred             CCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCcccc
Confidence            35579999999998 7999999999    377888888775

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.96  E-value=2.3e-06  Score=38.02  Aligned_cols=36  Identities=11%  Similarity=0.123  Sum_probs=30.0

Q ss_pred             CCcccccccccCCcceeecCCCC----CCCCCCCcccCCC
Q psy9821           6 SDSCAVAVAARHNISVYEEDARW----SYSLCPDVDECGL   41 (78)
Q Consensus         6 ~~~C~~~~~~~~~~~~c~c~~g~----~~~~C~~~~~c~~   41 (78)
                      +..|.+.|.+..++|.|.|++||    ++..|.++++|..
T Consensus         8 ~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~c   47 (55)
T 2jkh_L            8 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC   47 (55)
T ss_dssp             GGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSCT
T ss_pred             CCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCccccC
Confidence            45788999999999999999999    3677888877653

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=97.96  E-value=3.6e-07  Score=48.70  Aligned_cols=58  Identities=21%  Similarity=0.366  Sum_probs=36.9

Q ss_pred             ccccccCCcceeecCCCCC----CCCCCCccc--CCCCCCCC--CCCCEEEeCCC----CeEeeCCCCce
Q psy9821          11 VAVAARHNISVYEEDARWS----YSLCPDVDE--CGLGLHDC--HKDAKCTNTHG----SYSCQCKRGFH   68 (78)
Q Consensus        11 ~~~~~~~~~~~c~c~~g~~----~~~C~~~~~--c~~~~~~c--~~~~~C~~~~~----~~~c~C~~g~~   68 (78)
                      ++|.+..++|.|.|++||.    |..|+++++  |.....++  .....|++..+    .|.|.|+.||.
T Consensus        15 ~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~   84 (162)
T 1uzk_A           15 GNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA   84 (162)
T ss_dssp             SEEEEETTEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCE
T ss_pred             CEeECCCCCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCC
Confidence            4567788999999999996    888987766  75433333  12456777665    56677766654

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.94  E-value=3.5e-05  Score=33.57  Aligned_cols=41  Identities=34%  Similarity=0.822  Sum_probs=29.4

Q ss_pred             CcccCCCC--------CCCCCCCCEEEeCCCCeEeeCCCCceeCCC-Cceee
Q psy9821          35 DVDECGLG--------LHDCHKDAKCTNTHGSYSCQCKRGFHGDGK-TSCTK   77 (78)
Q Consensus        35 ~~~~c~~~--------~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~-~~c~~   77 (78)
                      ++++|...        ..+|.  ..|++++++|.|.|+.||.+... ..|.+
T Consensus         3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~   52 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred             ccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeECCCCCccCC
Confidence            56677543        25675  68999999999999999986432 33643

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.91  E-value=1.3e-05  Score=40.08  Aligned_cols=50  Identities=20%  Similarity=0.460  Sum_probs=36.6

Q ss_pred             cCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCCCcee
Q psy9821          24 EDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT   76 (78)
Q Consensus        24 c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c~   76 (78)
                      ...+|.+..| ++++|......|.  ..|++..++|.|.|+.||.+.....|.
T Consensus        18 ~~~~~~~~~C-d~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~   67 (107)
T 2w2n_E           18 TENLYFQGAM-GTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCE   67 (107)
T ss_dssp             --CCCCSCCB-SCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEE
T ss_pred             cCCCcCCCCC-cCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCccc
Confidence            3567778888 6788876555674  689999999999999999873322344

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.78  E-value=4.3e-05  Score=35.41  Aligned_cols=42  Identities=29%  Similarity=0.559  Sum_probs=28.1

Q ss_pred             CCcccCCCCCCCCCCCCEEEeCCC-CeEeeCCCCceeC-CCCceee
Q psy9821          34 PDVDECGLGLHDCHKDAKCTNTHG-SYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        34 ~~~~~c~~~~~~c~~~~~C~~~~~-~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      .++++|....+.|.  ..|.+.++ +|.|.|+.||... ....|.+
T Consensus         3 ~d~~eC~~~nggC~--h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d   46 (69)
T 1kli_L            3 DDQLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGVSCTP   46 (69)
T ss_dssp             SCCCCTTSGGGGCS--SEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             cccccccCCCCCcC--CEeEcCCCCCEEEeCCCCCeECCCCCcccC
Confidence            46677765555564  67888888 7889999888742 2234654

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.78  E-value=5.8e-06  Score=38.39  Aligned_cols=37  Identities=8%  Similarity=0.061  Sum_probs=30.7

Q ss_pred             CCCcccccccccCC-cceeecCCCC----CCCCCCCcccCCC
Q psy9821           5 ISDSCAVAVAARHN-ISVYEEDARW----SYSLCPDVDECGL   41 (78)
Q Consensus         5 ~~~~C~~~~~~~~~-~~~c~c~~g~----~~~~C~~~~~c~~   41 (78)
                      +|..|++.|.+..+ +|.|.|+.||    ++..|.+++++.-
T Consensus        11 ~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~C   52 (69)
T 1kli_L           11 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC   52 (69)
T ss_dssp             GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSCT
T ss_pred             CCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCcccccC
Confidence            45689999999998 8999999999    4778888877653

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.76  E-value=6.4e-05  Score=36.00  Aligned_cols=35  Identities=34%  Similarity=1.007  Sum_probs=28.6

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ++++|...++.|.. ..|++..++|.|.|+.||.+.
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~   36 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESG   36 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEEC
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCcc
Confidence            57888766667864 489999999999999999853

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.74  E-value=3.8e-05  Score=33.96  Aligned_cols=39  Identities=28%  Similarity=0.693  Sum_probs=27.5

Q ss_pred             ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC-CCCceee
Q psy9821          37 DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      ++|....+.|.  ..|++++++|.|.|+.||... ....|.+
T Consensus         2 dEC~~~~~~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~d   41 (55)
T 2jkh_L            2 KLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGKACIP   41 (55)
T ss_dssp             CCTTTGGGGCS--SEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             ccccCCCCCcC--cEeEcCCCCeEEeCCCCCEECCCCCeecc
Confidence            45554445675  689999999999999999743 2233654

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=97.65  E-value=1.9e-05  Score=35.07  Aligned_cols=33  Identities=9%  Similarity=0.266  Sum_probs=24.3

Q ss_pred             CCCCCcccccc-cccCCcceeecCCCCCCCCCCC
Q psy9821           3 CFISDSCAVAV-AARHNISVYEEDARWSYSLCPD   35 (78)
Q Consensus         3 c~~~~~C~~~~-~~~~~~~~c~c~~g~~~~~C~~   35 (78)
                      |.++.+|.... .+..+.|.|.|++||+|..|+.
T Consensus        16 C~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~   49 (55)
T 3u7u_G           16 CVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQN   49 (55)
T ss_dssp             SCTTCEEEEECCC--CCCEEEEECTTEESTTSCE
T ss_pred             CCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCc
Confidence            77788885432 2456789999999999999953

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.62  E-value=3.6e-05  Score=34.86  Aligned_cols=37  Identities=24%  Similarity=0.749  Sum_probs=29.8

Q ss_pred             CCCCcccCCCCCCCCCCC--CEEEeCCCCeEeeCCCCce-eC
Q psy9821          32 LCPDVDECGLGLHDCHKD--AKCTNTHGSYSCQCKRGFH-GD   70 (78)
Q Consensus        32 ~C~~~~~c~~~~~~c~~~--~~C~~~~~~~~c~C~~g~~-~~   70 (78)
                      .+..+++|.  ..+|..+  +.|++..++|.|.|+.||. +.
T Consensus         7 ~~~~~d~C~--snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~   46 (61)
T 2k2s_B            7 LSETPAACS--SNPCGPEAAGTCKETNSGYICRCNQGYRISL   46 (61)
T ss_dssp             CTTSCCHHH--HCSSCSSSCCEEEECSSEEEEECCTTEEEEE
T ss_pred             hcCCCCcCc--CCCCcCCCccccccCCCceEeECCCCCccCC
Confidence            355667776  4678877  7999999999999999998 63

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.56  E-value=4.9e-05  Score=31.12  Aligned_cols=28  Identities=18%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++.+|    .+..++|.|.|++||+|..|+
T Consensus        11 C~ngg~C----~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B           11 CLNGGSC----KDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCTTCEE----EEETTEEEEECCTTCCSTTSC
T ss_pred             CCCCCEe----EcCCCceEeECCCCCcCCccC
Confidence            4455554    455788999999999998874

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.51  E-value=0.00015  Score=31.78  Aligned_cols=35  Identities=29%  Similarity=0.687  Sum_probs=26.4

Q ss_pred             cccCCCC-CCCCCCCCEEE--eCCCCeEeeCCCCceeC
Q psy9821          36 VDECGLG-LHDCHKDAKCT--NTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        36 ~~~c~~~-~~~c~~~~~C~--~~~~~~~c~C~~g~~~~   70 (78)
                      +++|... ..+|..+++|+  +..++|.|.|+.||.+.
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~   40 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD   40 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSS
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCC
Confidence            4556521 24788888998  78899999999999864

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.48  E-value=0.00018  Score=37.77  Aligned_cols=38  Identities=32%  Similarity=0.745  Sum_probs=27.4

Q ss_pred             CCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          31 SLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        31 ~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..|.++++|.  ..+|..++.|++..++|.|.|+.||.+.
T Consensus        43 ~~c~dideC~--~~pC~n~g~C~~~~~~y~C~C~~G~~G~   80 (146)
T 1x7a_L           43 KQYVDGDQCE--PNPCLNGGLCKDDINSYECWCQVGFEGK   80 (146)
T ss_dssp             -------CCS--SCSSCTTCEEEECSSCEEEECCSSEEST
T ss_pred             ccCCCcCcCC--CCCCCCCCEeECCCCCEEEecCCCCcCC
Confidence            3578899997  5689888999999999999999999853

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=97.41  E-value=4.2e-05  Score=34.38  Aligned_cols=32  Identities=13%  Similarity=0.171  Sum_probs=26.2

Q ss_pred             CCCcccccccccC-CcceeecCCCC----CCCCCCCc
Q psy9821           5 ISDSCAVAVAARH-NISVYEEDARW----SYSLCPDV   36 (78)
Q Consensus         5 ~~~~C~~~~~~~~-~~~~c~c~~g~----~~~~C~~~   36 (78)
                      ++..|++.|.+.. ++|.|.|++||    ++..|.++
T Consensus         5 ~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~   41 (59)
T 2wph_E            5 KNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA   41 (59)
T ss_dssp             GGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEES
T ss_pred             CCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCC
Confidence            4568999999988 69999999999    36678664

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.41  E-value=8.4e-05  Score=33.67  Aligned_cols=39  Identities=10%  Similarity=0.211  Sum_probs=27.4

Q ss_pred             CCCCCCcccccc-cccCCcceeecCCCCCCCCCC-CcccCC
Q psy9821           2 LCFISDSCAVAV-AARHNISVYEEDARWSYSLCP-DVDECG   40 (78)
Q Consensus         2 ~c~~~~~C~~~~-~~~~~~~~c~c~~g~~~~~C~-~~~~c~   40 (78)
                      -|.++.+|.... .+..+.|.|.|++||+|..|+ +++++.
T Consensus        13 pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~   53 (63)
T 1hae_A           13 FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKV   53 (63)
T ss_dssp             TSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSC
T ss_pred             cCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccc
Confidence            366777775321 124578999999999999994 566654

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=97.38  E-value=5.1e-05  Score=36.84  Aligned_cols=41  Identities=10%  Similarity=0.044  Sum_probs=30.5

Q ss_pred             cceeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCce
Q psy9821          19 ISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH   68 (78)
Q Consensus        19 ~~~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~   68 (78)
                      +|.|.|.+||+|..| ++++|.  ..+      |++..+.|.|.|+.||.
T Consensus         1 sy~C~C~~g~~g~~c-~~~~c~--~~p------C~n~~~~y~C~C~~G~~   41 (91)
T 1tpg_A            1 SYQVICRDEKTQMIY-QQHQSW--LRP------VLRSNRVEYCWCNSGRA   41 (91)
T ss_dssp             CCCCCCBCSSSCCBC-CSSCEE--EEE------CSSSSCEEEEECSSSCC
T ss_pred             CeeeECCCCCcCCeE-CCCccc--CCc------cccCCCCcEeECCCCCc
Confidence            477899999999888 356654  222      44667788999999985

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.36  E-value=4.4e-05  Score=33.37  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++.+|........+.|.|.|++||+|..|+
T Consensus        16 C~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A           16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (52)
T ss_dssp             SCTTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred             CCCCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence            66777776422123457889999999998885

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=97.35  E-value=9.8e-05  Score=35.45  Aligned_cols=35  Identities=40%  Similarity=0.924  Sum_probs=27.8

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ++++|...+..| ..+.|++..++|.|.|+.||.+.
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~   36 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYN   36 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEE
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCCCceEC
Confidence            567787555557 56789999999999999999854

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.31  E-value=0.00012  Score=31.01  Aligned_cols=30  Identities=10%  Similarity=0.086  Sum_probs=21.7

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++.+|..  ....++|.|.|++||+|..|+
T Consensus        11 C~ngg~C~~--~~~~~~~~C~C~~G~~G~~Ce   40 (45)
T 1a3p_A           11 CLNGGVXMH--IESLDSYTCNCVIGYSGDRCQ   40 (45)
T ss_dssp             CSSSCEEEE--CTTTSSEEEECCTTEETTTTC
T ss_pred             CCCCCEEEe--ecCCCCEEEEcCCCCcCCcCC
Confidence            555555531  145678999999999999884

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.29  E-value=1.7e-05  Score=34.77  Aligned_cols=38  Identities=32%  Similarity=0.694  Sum_probs=27.9

Q ss_pred             ceeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEe----CCCCeEeeCCCCceeC
Q psy9821          20 SVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTN----THGSYSCQCKRGFHGD   70 (78)
Q Consensus        20 ~~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~----~~~~~~c~C~~g~~~~   70 (78)
                      +.|.|++||+             ..+|.++++|+.    ..+.|.|.|+.||.+.
T Consensus         3 ~~C~C~~g~~-------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~   44 (52)
T 3ca7_A            3 PTYKCPETFD-------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQ   44 (52)
T ss_dssp             CCBCCCHHHH-------------HHTSCTTCEEEEEEETTEEEEEEECCTTEEST
T ss_pred             eeeECCCCCc-------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCC
Confidence            4577777774             235777788986    3467899999999875

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=97.29  E-value=0.00028  Score=42.94  Aligned_cols=50  Identities=18%  Similarity=0.469  Sum_probs=34.6

Q ss_pred             CcceeecCCCCCCCCCCC-c----------ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          18 NISVYEEDARWSYSLCPD-V----------DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        18 ~~~~c~c~~g~~~~~C~~-~----------~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..+.|.|++||.|..|+. .          ++|.. ...|.....|.  .+.+.|.|+.+|.+.
T Consensus       214 ~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~-~~~C~~~g~C~--~~~~~C~C~~G~~G~  274 (423)
T 2gy5_A          214 DTGECICPPGFMGRTCEKACELHTFGRTCKERCSG-QEGCKSYVFCL--PDPYGCSCATGWKGL  274 (423)
T ss_dssp             TTCCEECCTTEESTTSCEECCTTEESTTSCEECCS-TTTTTTCCEEE--TTTTEEECCBTCBSG
T ss_pred             CCCcEeCCCCccCCCcccccCCCCCCCCcCccCCC-CCCCCCCCEEC--CCCCeEEeCCCcccc
Confidence            357899999999999863 1          23331 34566566774  567789999998753

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.27  E-value=4.6e-05  Score=34.52  Aligned_cols=28  Identities=4%  Similarity=-0.092  Sum_probs=22.0

Q ss_pred             ccccCCcceeecCCCCC-CCCCCCcccCC
Q psy9821          13 VAARHNISVYEEDARWS-YSLCPDVDECG   40 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~-~~~C~~~~~c~   40 (78)
                      |.+..++|.|.|++||+ |..|+...+|.
T Consensus        27 C~~~~g~y~C~C~~Gy~~G~~C~~~~~C~   55 (61)
T 2k2s_B           27 CKETNSGYICRCNQGYRISLDGTGNVTCI   55 (61)
T ss_dssp             EEECSSEEEEECCTTEEEEECSSSCEEEE
T ss_pred             cccCCCceEeECCCCCccCCCCCCCCEec
Confidence            44567889999999999 99887655553

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.25  E-value=0.00058  Score=29.81  Aligned_cols=31  Identities=13%  Similarity=0.208  Sum_probs=22.0

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCPD   35 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~   35 (78)
                      |.++++|..  .+..++|.|.|++||+|..|+.
T Consensus        14 C~ngg~C~~--~~~~~~~~C~C~~G~~G~~Ce~   44 (53)
T 1egf_A           14 CLNGGVCMH--IESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             SCSSCEEEE--ESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCcEEEe--eCCCCCEEEECCCCCcCCcCCc
Confidence            445555531  1456789999999999999953

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=97.22  E-value=1.9e-06  Score=49.47  Aligned_cols=54  Identities=11%  Similarity=0.025  Sum_probs=39.9

Q ss_pred             cccCCcceeecCCCCCCCCC-CCccc-----------------------------CCCCCCCCCCCCEEEeCCCCeEeeC
Q psy9821          14 AARHNISVYEEDARWSYSLC-PDVDE-----------------------------CGLGLHDCHKDAKCTNTHGSYSCQC   63 (78)
Q Consensus        14 ~~~~~~~~c~c~~g~~~~~C-~~~~~-----------------------------c~~~~~~c~~~~~C~~~~~~~~c~C   63 (78)
                      .+..++|.|.|+.||+|..| ..+++                             |.  ..+|..+.+|++...+|.|.|
T Consensus        47 ~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~--s~pC~ngG~C~~~~~sy~C~C  124 (267)
T 4fbr_A           47 LKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAV--SIKSNDGGKTLTGTTTYNGEG  124 (267)
T ss_dssp             EEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEE--EEECSSTTSEEEEEEEETTSC
T ss_pred             cCCCCCeEEeCCCCcccccccccccccccccCcCCCcccCCCeeeccCccccccccC--CCCCCCCCEEecCCccEEeeC
Confidence            35567888899999977666 33333                             32  235777788888888999999


Q ss_pred             CCCcee
Q psy9821          64 KRGFHG   69 (78)
Q Consensus        64 ~~g~~~   69 (78)
                      +.+|.+
T Consensus       125 ~~Gf~G  130 (267)
T 4fbr_A          125 PIGFKS  130 (267)
T ss_dssp             CEEEEE
T ss_pred             CCCccc
Confidence            999986

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=97.20  E-value=0.0002  Score=42.11  Aligned_cols=43  Identities=21%  Similarity=0.655  Sum_probs=7.9

Q ss_pred             ceeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          20 SVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        20 ~~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      +.|.|++||.|..|+ +++|.   .+|..++.|..   .+.|.|+.||.+
T Consensus       229 ~~C~C~~G~~G~~C~-~~~C~---~~C~~~g~C~~---~~~C~C~~G~~G  271 (324)
T 2ygq_A          229 GKCICPPGLEGEQCE-ISKCP---QPCRNGGKCIG---KSKCKCSKGYQG  271 (324)
T ss_dssp             SCBCCCTTCCTTTTC-----------------------------------
T ss_pred             CeeeCCCCccCCCCC-cCcCC---CcCCCCCEECC---CCEEECCCCCcC
Confidence            445555555555553 22232   23333344432   234555555543

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.17  E-value=0.00079  Score=28.34  Aligned_cols=27  Identities=30%  Similarity=0.726  Sum_probs=22.5

Q ss_pred             CCCCCCCEEE--eCCCCeEeeCCCCceeC
Q psy9821          44 HDCHKDAKCT--NTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        44 ~~c~~~~~C~--~~~~~~~c~C~~g~~~~   70 (78)
                      .+|..++.|+  +..+.|.|.|+.||.+.
T Consensus         9 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~   37 (45)
T 1a3p_A            9 GYCLNGGVXMHIESLDSYTCNCVIGYSGD   37 (45)
T ss_dssp             SCCSSSCEEEECTTTSSEEEECCTTEETT
T ss_pred             CCCCCCCEEEeecCCCCEEEEcCCCCcCC
Confidence            3788788998  57789999999999864

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.17  E-value=9.2e-05  Score=33.15  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=24.0

Q ss_pred             CCCCCCcccccccccCCcceeecCCCCCCCCCCC
Q psy9821           2 LCFISDSCAVAVAARHNISVYEEDARWSYSLCPD   35 (78)
Q Consensus         2 ~c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~   35 (78)
                      -|.++.+|..........+.|.|++||+|..|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            3777778763221234568899999999999964

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.15  E-value=0.00033  Score=30.42  Aligned_cols=33  Identities=21%  Similarity=0.596  Sum_probs=23.8

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCceeC-CCCceee
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      .+.|.  ..|++++++|.|.|+.||... ....|.+
T Consensus         5 ng~C~--~~C~n~~gs~~C~C~~Gy~L~~d~~tC~d   38 (51)
T 1kig_L            5 NGGCD--QFCREERSEVRCSCAHGYVLGDDSKSCVS   38 (51)
T ss_dssp             TTSSS--SCCCEETTEECCCCCTTEEECTTSSCEEE
T ss_pred             CCCcC--CEeEcCCCCeEEeCCCCcEECCCCCcccc
Confidence            34564  578999999999999999743 2234654

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=97.07  E-value=0.00039  Score=36.25  Aligned_cols=36  Identities=31%  Similarity=0.756  Sum_probs=30.6

Q ss_pred             CCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        33 C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      |.++++|.  ..+|..++.|++..++|.|.|+.||.+.
T Consensus        44 c~did~C~--~~pC~n~g~C~~~~g~y~C~C~~G~~G~   79 (142)
T 2c4f_L           44 YSDGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFEGR   79 (142)
T ss_dssp             HTTCCGGG--GCCCCTTCEEEEETTEEEEECCTTEEST
T ss_pred             CCccCcCc--CCCcCCCCEEeCCCCCEEeeCCCCccCC
Confidence            56778887  5679888899999999999999999753

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.05  E-value=0.00035  Score=35.09  Aligned_cols=37  Identities=32%  Similarity=0.750  Sum_probs=25.5

Q ss_pred             CCcccCCCCC------CCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          34 PDVDECGLGL------HDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        34 ~~~~~c~~~~------~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      .++++|...+      +.|..++.|++..++|.|.|+.||.+.
T Consensus         4 ~d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~   46 (114)
T 1aut_L            4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR   46 (114)
T ss_dssp             ----CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEEST
T ss_pred             eecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCC
Confidence            4455665332      337677899999999999999999864

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=97.04  E-value=0.00058  Score=40.19  Aligned_cols=44  Identities=23%  Similarity=0.505  Sum_probs=21.6

Q ss_pred             cceeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          19 ISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        19 ~~~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      .+.|.|++||.|..|+. +.|.   ..|..++.|..   .+.|.|+.||.+
T Consensus       164 ~~~C~C~~G~~G~~C~~-~~C~---~~C~~~G~C~~---~~~C~C~~G~~G  207 (324)
T 2ygq_A          164 RRICECPDGFHGPHCEK-ALCT---PRCMNGGLCVT---PGFCICPPGFYG  207 (324)
T ss_dssp             TSCEECCTTEESSSSCE-ESSS---SCCCTTCEECS---SCCEECCTTCBT
T ss_pred             CCeEECCCCCcCCCCCC-CCCC---CCCCCCCEEcC---CCEEeCCCCccC
Confidence            35566666666666642 2332   13444455543   234555555543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.02  E-value=0.00018  Score=44.10  Aligned_cols=46  Identities=22%  Similarity=0.640  Sum_probs=16.9

Q ss_pred             CcceeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          18 NISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        18 ~~~~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ....|.|++||+|..|. +..|..   +|..+..|.+.   +.|.|+.+|.+.
T Consensus       406 ~~~~C~C~~G~~G~~C~-~~~C~~---~C~~~g~C~~~---~~C~C~~G~~G~  451 (463)
T 2wg3_C          406 PTGKCCCSPGWEGDFCR-TAKCEP---ACRHGGVCVRP---NKCLCKKGYLGP  451 (463)
T ss_dssp             TTSCEEECTTEESTTSC-EECC-------------------------------
T ss_pred             CCCeECCCCCcCCCcCC-cCcCCC---CCCCCCEECCC---CEEECCCCcccC
Confidence            34689999999999994 566763   78777788764   589999999854

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=97.00  E-value=0.00079  Score=43.31  Aligned_cols=47  Identities=30%  Similarity=0.555  Sum_probs=36.3

Q ss_pred             ceeecCCCCCCCCCC---CcccCCCCC-CCCCCCCEEEeCCCCeEeeC-CCCceeC
Q psy9821          20 SVYEEDARWSYSLCP---DVDECGLGL-HDCHKDAKCTNTHGSYSCQC-KRGFHGD   70 (78)
Q Consensus        20 ~~c~c~~g~~~~~C~---~~~~c~~~~-~~c~~~~~C~~~~~~~~c~C-~~g~~~~   70 (78)
                      +.|.|++||.|..|.   +.++|.... .+|..++.|...    .|.| ..||.+.
T Consensus       545 g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~g----~C~C~~~Gy~G~  596 (690)
T 3fcs_B          545 GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECG----SCVCIQPGSYGD  596 (690)
T ss_dssp             TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEETT----EEECCSTTCBST
T ss_pred             CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeCC----EEECCCCCccCC
Confidence            789999999999996   466776322 568878889652    8999 8898864

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.97  E-value=0.00038  Score=30.15  Aligned_cols=24  Identities=4%  Similarity=-0.039  Sum_probs=21.2

Q ss_pred             CCcccccccccCCcceeecCCCCC
Q psy9821           6 SDSCAVAVAARHNISVYEEDARWS   29 (78)
Q Consensus         6 ~~~C~~~~~~~~~~~~c~c~~g~~   29 (78)
                      +..|.+.|.+..++|.|.|++||.
T Consensus        19 ~~~C~~~C~n~~Gsy~C~C~~Gy~   42 (53)
T 1apq_A           19 QPQCQHLCHNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             SCTTSSEEEEETTEEEEECSTTCE
T ss_pred             CCCCCCEeECCCCCeEEECCCCCe
Confidence            357888999999999999999995

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.89  E-value=0.0003  Score=30.86  Aligned_cols=30  Identities=10%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++.+|..  ....+.|.|.|++||+|..|+
T Consensus        14 C~nGG~C~~--~~~~~~~~C~C~~GytG~~Ce   43 (53)
T 1nql_B           14 CLHDGVCMY--IEALDKYACNCVVGYIGERCQ   43 (53)
T ss_dssp             ECTTCEEEE--ETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCeEEee--ecCCCCEEEecCCCCcCCCCC
Confidence            455555531  134567999999999999995

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=96.88  E-value=0.0022  Score=28.64  Aligned_cols=32  Identities=25%  Similarity=0.703  Sum_probs=23.2

Q ss_pred             CCCCCCCEEEeCC-CCeEeeCCCCceeC-CCCceee
Q psy9821          44 HDCHKDAKCTNTH-GSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        44 ~~c~~~~~C~~~~-~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      +.|.  ..|++.+ ++|.|.|+.||... ....|.+
T Consensus         7 ggC~--~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d   40 (59)
T 2wph_E            7 GRCE--QFCKNSADNKVVCSCTEGYRLAENQKSCEP   40 (59)
T ss_dssp             GGCS--SEEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred             CCcC--CEeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence            4464  6899998 69999999999743 3334654

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=96.81  E-value=0.0017  Score=28.35  Aligned_cols=32  Identities=31%  Similarity=0.762  Sum_probs=23.2

Q ss_pred             CCCCCCCEEEeCCC-CeEeeCCCCceeC-CCCceee
Q psy9821          44 HDCHKDAKCTNTHG-SYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        44 ~~c~~~~~C~~~~~-~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      +.|.  ..|++..+ +|.|.|+.||... ....|.+
T Consensus         7 ggC~--~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d   40 (53)
T 2bz6_L            7 GGCE--QYCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             GGCS--SEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCcC--CEeEcCCCCCEEeeCCCCCEECCCCCcccC
Confidence            3454  68999998 7999999999743 3334665

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=96.80  E-value=0.0021  Score=31.93  Aligned_cols=53  Identities=15%  Similarity=0.299  Sum_probs=41.6

Q ss_pred             cCCcceeecCCCC--CCCCCCCccc-CCCCCCCCCCCCEEEeCC-CCeEeeCCCCce
Q psy9821          16 RHNISVYEEDARW--SYSLCPDVDE-CGLGLHDCHKDAKCTNTH-GSYSCQCKRGFH   68 (78)
Q Consensus        16 ~~~~~~c~c~~g~--~~~~C~~~~~-c~~~~~~c~~~~~C~~~~-~~~~c~C~~g~~   68 (78)
                      ..+...|+|..||  +|..|..++. |.....-|.+.+.|.... ....|.|..++.
T Consensus        28 ~~G~e~CrCl~gY~~dg~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           28 LDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             TTSCEEEEECTTEEECSSSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             CCCCEeEEEECCeeccCCEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            4677889999999  5778866666 665566788889999885 677899988854

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=96.80  E-value=8.8e-06  Score=46.74  Aligned_cols=63  Identities=11%  Similarity=0.024  Sum_probs=41.5

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC-CcccCC------C---------------------CCCCCCCCCEEEe
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP-DVDECG------L---------------------GLHDCHKDAKCTN   54 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~-~~~~c~------~---------------------~~~~c~~~~~C~~   54 (78)
                      |.++.+|.    +...+|.|.|+.||+|..|. ++++|.      .                     ...+|..+.+|++
T Consensus       107 C~ngG~C~----~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ngg~C~d  182 (267)
T 4fbr_A          107 SNDGGKTL----TGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLS  182 (267)
T ss_dssp             CSSTTSEE----EEEEEETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECSSTTSEEE
T ss_pred             CCCCCEEe----cCCccEEeeCCCCccccCCCCCcccccccCCcCCccccCCcceecccccccccccCCCCCCCCCEeeC
Confidence            44444443    45577888999999877773 333311      0                     0124666677888


Q ss_pred             CCCCeEeeCCCCcee
Q psy9821          55 THGSYSCQCKRGFHG   69 (78)
Q Consensus        55 ~~~~~~c~C~~g~~~   69 (78)
                      ...+|.|.|+.||.+
T Consensus       183 g~~~y~C~Cp~Gf~G  197 (267)
T 4fbr_A          183 GTMTYNGEGPIGFRG  197 (267)
T ss_dssp             EEEEETTSCCEEEEE
T ss_pred             CCCCeEEeCCCCccc
Confidence            888899999999875

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=96.71  E-value=0.00097  Score=28.33  Aligned_cols=18  Identities=6%  Similarity=0.106  Sum_probs=15.7

Q ss_pred             CCcceeecCCCCCCCCCC
Q psy9821          17 HNISVYEEDARWSYSLCP   34 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~   34 (78)
                      .+.|.|.|++||+|..|+
T Consensus        25 ~~~~~C~C~~GytG~~Ce   42 (46)
T 1k36_A           25 MSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             TTEEEEEECTTCSSTTSC
T ss_pred             CCCEEEECCCCCccCCCC
Confidence            367999999999999885

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=96.71  E-value=0.003  Score=38.50  Aligned_cols=50  Identities=22%  Similarity=0.579  Sum_probs=33.7

Q ss_pred             CCcceeecCCCCCCCCCCC-c------ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          17 HNISVYEEDARWSYSLCPD-V------DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~-~------~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ...+.|.|++||.|..|.. -      ..|.. .=.|.++..|.+..+   |.|+.+|.+.
T Consensus       260 ~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~-~C~C~ngg~C~~~~~---C~C~~G~~G~  316 (423)
T 2gy5_A          260 PDPYGCSCATGWKGLQCNEACHPGFYGPDCKL-RCSCNNGEMCDRFQG---CLCSPGWQGL  316 (423)
T ss_dssp             TTTTEEECCBTCBSGGGCBCCCTTBCSBTTCC-BCCCTTCCEEETTTE---EECCTTCBST
T ss_pred             CCCCeEEeCCCcccccccCccCCCCcCCcccc-cccCCCCCEecCCCc---eECCCCCcCC
Confidence            3578999999999988853 1      11221 114666778876543   9999999864

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=96.69  E-value=0.0012  Score=28.00  Aligned_cols=35  Identities=20%  Similarity=0.557  Sum_probs=24.7

Q ss_pred             CcccCCC-CCCCCCCCCEEEeCC--CCeEeeCCCCceeC
Q psy9821          35 DVDECGL-GLHDCHKDAKCTNTH--GSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~-~~~~c~~~~~C~~~~--~~~~c~C~~g~~~~   70 (78)
                      ++++|.. ...+|.. ++|....  +.|.|.|+.||.+.
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~   39 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGV   39 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSST
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccC
Confidence            3455642 1267876 6898754  67999999999875

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=96.69  E-value=0.00097  Score=32.90  Aligned_cols=53  Identities=19%  Similarity=0.372  Sum_probs=40.2

Q ss_pred             cCCcceeecCCCCC--CCCCCCc--ccCCCCCCCCCCCCEEEeCC-----CCeEeeCCCCce
Q psy9821          16 RHNISVYEEDARWS--YSLCPDV--DECGLGLHDCHKDAKCTNTH-----GSYSCQCKRGFH   68 (78)
Q Consensus        16 ~~~~~~c~c~~g~~--~~~C~~~--~~c~~~~~~c~~~~~C~~~~-----~~~~c~C~~g~~   68 (78)
                      ..+...|+|..||.  |..|...  ..|.....-|.+.+.|....     ....|.|.+++.
T Consensus        22 ~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C           22 LDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             TTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             CCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            36888999999994  6677655  46765556788888998774     567899998864

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=96.65  E-value=0.0018  Score=33.77  Aligned_cols=34  Identities=35%  Similarity=0.803  Sum_probs=27.0

Q ss_pred             CCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          34 PDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        34 ~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      .++++|.  ..+|.. +.|++..++|.|.|+.||.+.
T Consensus         2 ~dideC~--~~pC~n-g~C~n~~g~y~C~C~~G~~g~   35 (147)
T 2w86_A            2 ADIDECE--SSPCIN-GVCKNSPGSFICECSSESTLD   35 (147)
T ss_dssp             CCCCGGG--GCCSBT-SEEEEETTEEEEECCTTEEEC
T ss_pred             CcCccCc--CCCCCC-CEeECCCCCEEeECCCCcccC
Confidence            3567886  357864 589999999999999999865

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=96.65  E-value=0.00029  Score=38.77  Aligned_cols=36  Identities=36%  Similarity=0.925  Sum_probs=0.0

Q ss_pred             CCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          32 LCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        32 ~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      .|.++++|.  ..+|..++.|++..++|.|.|+.||.+
T Consensus        38 ~c~dideC~--~~pC~ngg~C~n~~g~y~C~C~~Gf~G   73 (195)
T 1nfu_B           38 KYKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFEG   73 (195)
T ss_dssp             --------------------------------------
T ss_pred             cCCCCcccC--CCCCCCCCEeECCCCCeeEeCCCCcee
Confidence            578899998  567988889999999999999999985

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.63  E-value=0.00098  Score=35.52  Aligned_cols=50  Identities=26%  Similarity=0.731  Sum_probs=33.8

Q ss_pred             CCCCCCC-CCCcccCCCCCCC---CCCCCEEEeCCCCeEeeCCCCceeCC-CCceee
Q psy9821          26 ARWSYSL-CPDVDECGLGLHD---CHKDAKCTNTHGSYSCQCKRGFHGDG-KTSCTK   77 (78)
Q Consensus        26 ~g~~~~~-C~~~~~c~~~~~~---c~~~~~C~~~~~~~~c~C~~g~~~~~-~~~c~~   77 (78)
                      .||.+.+ +.++++|......   |.  ..|.+..++|.|.|+.||...+ ...|.+
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCD--HHCHNHLGGFYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSS--SEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             cCceeeeeccccCcccCCCCCCCccC--CccccCCCCEEEeCCCCcEECCCCCcccc
Confidence            5554444 3567888754432   65  5899999999999999998432 234654

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=96.54  E-value=0.0012  Score=42.46  Aligned_cols=47  Identities=17%  Similarity=0.325  Sum_probs=36.3

Q ss_pred             ceeecC----CCCCCCCCC-CcccCCCC-CCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          20 SVYEED----ARWSYSLCP-DVDECGLG-LHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        20 ~~c~c~----~g~~~~~C~-~~~~c~~~-~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +.|.|+    +||.|..|+ +...|... ...|..++.|..    +.|.|+.||.+.
T Consensus       504 g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~  556 (690)
T 3fcs_B          504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGY  556 (690)
T ss_dssp             SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESS
T ss_pred             CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCC
Confidence            679999    999999995 56777631 246776788876    689999999865

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=96.51  E-value=0.00041  Score=35.83  Aligned_cols=37  Identities=35%  Similarity=0.908  Sum_probs=0.0

Q ss_pred             CCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          31 SLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        31 ~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      ..|.++++|.  ..+|..++.|++..++|.|.|+.||.+
T Consensus        37 ~~c~d~d~C~--~~pC~n~g~C~~~~~~y~C~C~~G~~G   73 (134)
T 2vh0_B           37 NKYKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFEG   73 (134)
T ss_dssp             ---------------------------------------
T ss_pred             ccCCCcCcCC--CCCCCCcCCcccCCCCEEeeCCCCccC
Confidence            3578888887  467887789999999999999999975

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.41  E-value=0.0056  Score=36.66  Aligned_cols=38  Identities=26%  Similarity=0.625  Sum_probs=26.4

Q ss_pred             cCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCCCceee
Q psy9821          38 ECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK   77 (78)
Q Consensus        38 ~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c~~   77 (78)
                      +|...+..|  ...|.+.+++|.|.|+.||.......|.+
T Consensus         2 eC~~~~~~c--~~~C~~~~~~y~C~C~~G~~~~~~~~C~d   39 (400)
T 3p5b_L            2 ECLDNNGGC--SHVCNDLKIGYECLCPDGFQLVAQRRCED   39 (400)
T ss_dssp             CTTTTGGGC--SSEEEECSSSEEEECCTTEEECSSSCEEE
T ss_pred             cccCCCCCC--CCEeECCCCCeEEECCCCCCcCCCCcccC
Confidence            455433445  37899999999999999998533333543

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=96.41  E-value=0.0064  Score=27.28  Aligned_cols=28  Identities=29%  Similarity=0.742  Sum_probs=22.9

Q ss_pred             CCCCCCCCEEEe-----CCCCeEeeCCCCceeC
Q psy9821          43 LHDCHKDAKCTN-----THGSYSCQCKRGFHGD   70 (78)
Q Consensus        43 ~~~c~~~~~C~~-----~~~~~~c~C~~g~~~~   70 (78)
                      ..+|.++++|++     ..+.|.|.|+.||.+.
T Consensus        11 ~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~   43 (63)
T 1hae_A           11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA   43 (63)
T ss_dssp             HTTSCTTCEEEEEESSSSSCCEEEECCTTEEST
T ss_pred             CCcCCCCcEEecCCccCCCCCEEEECCCCCcCC
Confidence            456887889986     5688999999999864

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.34  E-value=0.00098  Score=35.09  Aligned_cols=28  Identities=7%  Similarity=-0.098  Sum_probs=21.7

Q ss_pred             ccccCCcceeecCCCCCCCCCCCcccCC
Q psy9821          13 VAARHNISVYEEDARWSYSLCPDVDECG   40 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~~C~~~~~c~   40 (78)
                      |.+..+.|.|.|++||.|..|+..++|.
T Consensus       133 C~~~~~~~~c~C~~g~~G~~Ce~~~~c~  160 (162)
T 1g1s_A          133 CLETIGNYTCSCYPGFYGPECEYVRDDD  160 (162)
T ss_dssp             EEECSSSEEEEECTTEESTTSCEECC--
T ss_pred             EecCCCCceEeCCCCCcCcccccCcccC
Confidence            5566788999999999999998777765

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=96.23  E-value=0.0039  Score=26.98  Aligned_cols=20  Identities=5%  Similarity=0.096  Sum_probs=15.2

Q ss_pred             CCcceeecCCCCCCCCCCCc
Q psy9821          17 HNISVYEEDARWSYSLCPDV   36 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~~   36 (78)
                      ...+.|.|++||+|..|+-.
T Consensus        27 ~~~~~C~C~~gy~G~RCe~~   46 (50)
T 3e50_C           27 EDKPACVCHSGYVGARCEHA   46 (50)
T ss_pred             CCCeEEECCCCCcccCCCce
Confidence            45678889999988888543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.07  E-value=0.025  Score=36.98  Aligned_cols=32  Identities=28%  Similarity=0.647  Sum_probs=23.4

Q ss_pred             cccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        36 ~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      +++|......|.  ..|.+.+++|.|.|+.||..
T Consensus       312 ~~~C~~~~~~C~--~~C~~~~~~y~C~C~~Gy~l  343 (791)
T 3m0c_C          312 TNECLDNNGGCS--HVCNDLKIGYECLCPDGFQL  343 (791)
T ss_dssp             CCSTTTGGGGCS--SEEEECSBSEEEECCTTCEE
T ss_pred             cccccccccCcc--ccccCCCCCcccCCCCCCcc
Confidence            344543333443  58999999999999999975

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.06  E-value=0.0017  Score=38.13  Aligned_cols=33  Identities=12%  Similarity=0.201  Sum_probs=21.4

Q ss_pred             CCCCCcccccccccCCcceeecCCCC----CCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARW----SYSLCPD   35 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~----~~~~C~~   35 (78)
                      |..+..|++.|.+..++|.|.|++||    .+..|..
T Consensus         4 c~~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~   40 (349)
T 3v64_C            4 CAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA   40 (349)
T ss_dssp             -----CCSSEECCC---CCEECCTTEEECTTSSCEEE
T ss_pred             cCCCCCCcCeeecCCCCeEEECCCCccCCCCCCcccc
Confidence            55667899999999999999999999    3567754

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.01  E-value=0.0035  Score=27.38  Aligned_cols=28  Identities=29%  Similarity=0.761  Sum_probs=22.8

Q ss_pred             CCCCCCCCEEE--eCCCCeEeeCCCCceeC
Q psy9821          43 LHDCHKDAKCT--NTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        43 ~~~c~~~~~C~--~~~~~~~c~C~~g~~~~   70 (78)
                      ..+|.++++|.  ...+.|.|.|+.||.+.
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~   40 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGE   40 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEEST
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCC
Confidence            45687788998  56778999999999875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.98  E-value=0.016  Score=37.28  Aligned_cols=33  Identities=27%  Similarity=0.629  Sum_probs=25.5

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      ++++|....+.|.  ..|.+..++|.|.|+.||..
T Consensus       293 ~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~~  325 (699)
T 1n7d_A          293 GTNECLDNNGGCS--HVCNDLKIGYECLCPDGFQL  325 (699)
T ss_dssp             CCCCTTSSTTTSC--TTCCCCTTCCCCCCCSSSCC
T ss_pred             ccccccccccCcC--CCcccCCCCcEEeCCCCeEc
Confidence            4566765555564  67999999999999999985

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.56  E-value=0.0098  Score=34.94  Aligned_cols=37  Identities=32%  Similarity=0.862  Sum_probs=20.5

Q ss_pred             ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC-CCcee
Q psy9821          37 DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG-KTSCT   76 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~-~~~c~   76 (78)
                      +||. ..+.|.  ..|.+..++|.|.|+.||.... ...|.
T Consensus         2 ~ec~-~~~~C~--~~C~n~~g~~~C~C~~g~~l~~d~~~C~   39 (349)
T 3v64_C            2 NECA-EEGYCS--QGCTNSEGAFQCWCEAGYELRPDRRSCK   39 (349)
T ss_dssp             --------CCS--SEECCC---CCEECCTTEEECTTSSCEE
T ss_pred             cccC-CCCCCc--CeeecCCCCeEEECCCCccCCCCCCccc
Confidence            5665 356675  7899999999999999998532 33464

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.50  E-value=0.0035  Score=36.42  Aligned_cols=28  Identities=7%  Similarity=-0.067  Sum_probs=22.9

Q ss_pred             ccccccCCcceeecCCCCC--CCCCCCccc
Q psy9821          11 VAVAARHNISVYEEDARWS--YSLCPDVDE   38 (78)
Q Consensus        11 ~~~~~~~~~~~c~c~~g~~--~~~C~~~~~   38 (78)
                      +.|.++.++|.|.|++||.  |..|.++++
T Consensus        19 a~C~Nt~Gsy~C~C~~Gy~GnG~~C~d~d~   48 (285)
T 1gl4_A           19 AECRDYATGFCCRCVANYTGNGRQCVAEGS   48 (285)
T ss_dssp             EEEEECSSCEEEEECTTEEECSSSEEETTC
T ss_pred             CEeEcCCCCeEEEcCCCCCCCCCcCCCCCC
Confidence            3467889999999999995  778877655

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=95.24  E-value=0.0077  Score=34.48  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             CCcccccccccCCcceeecCCCC----CCCCCCCcccCC
Q psy9821           6 SDSCAVAVAARHNISVYEEDARW----SYSLCPDVDECG   40 (78)
Q Consensus         6 ~~~C~~~~~~~~~~~~c~c~~g~----~~~~C~~~~~c~   40 (78)
                      |..|++.|.+..+++.|.|..||    .+..|...++|.
T Consensus        10 ~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~   48 (283)
T 3f1s_B           10 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA   48 (283)
T ss_dssp             SSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTC
T ss_pred             CCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccccc
Confidence            57999999999999999999999    356776655554

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=95.11  E-value=0.017  Score=35.94  Aligned_cols=50  Identities=20%  Similarity=0.333  Sum_probs=13.6

Q ss_pred             cceeecCCCCCCCCCCC-----------cccCCCCCCCCCCCCEEEeC--CCCeEeeCCCCceeC
Q psy9821          19 ISVYEEDARWSYSLCPD-----------VDECGLGLHDCHKDAKCTNT--HGSYSCQCKRGFHGD   70 (78)
Q Consensus        19 ~~~c~c~~g~~~~~C~~-----------~~~c~~~~~~c~~~~~C~~~--~~~~~c~C~~g~~~~   70 (78)
                      ...|.|++||.|..|..           ++.|.  .-.|.....+...  ....+|.|+.||.+.
T Consensus       459 tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~--~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~  521 (525)
T 4aqs_A          459 TGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCR--PCDCDLGGALNNSCSEDSGQCSCLPHMIGR  521 (525)
T ss_dssp             TCCBCBCTTCCSTTTCC------------------------------------------------
T ss_pred             CCEEECCCCCcCCCcccCCCCccCCCCCCCCCc--CCCCCCCCccCCccCCCCCeeECCCCCcCC
Confidence            45689999999998842           22232  1223332322221  223369999999864

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=95.11  E-value=0.018  Score=24.85  Aligned_cols=18  Identities=6%  Similarity=0.025  Sum_probs=14.1

Q ss_pred             CCcceeecCCCCCCCCCC
Q psy9821          17 HNISVYEEDARWSYSLCP   34 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~   34 (78)
                      ...+.|+|+.||+|..|+
T Consensus        31 ~~~~~C~C~~gy~G~RCe   48 (50)
T 2rnl_A           31 LEAVTCKCQQEYFGERCG   48 (50)
T ss_dssp             TTEEEEECCSSCCSSSCC
T ss_pred             CCCeeEECCCCccccccc
Confidence            446788999999888875

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=95.02  E-value=0.021  Score=32.64  Aligned_cols=40  Identities=25%  Similarity=0.693  Sum_probs=28.7

Q ss_pred             cccCCCC-CCCCCCCCEEEeCCCCeEeeCCCCceeC-CCCceee
Q psy9821          36 VDECGLG-LHDCHKDAKCTNTHGSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        36 ~~~c~~~-~~~c~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      .++|... ++.|.  ..|.+..++|.|.|..||... ....|.+
T Consensus         2 ~~eC~~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~d~~sC~p   43 (283)
T 3f1s_B            2 KNECHPERTDGCQ--HFCLPGQESYTCSCAQGYRLGEDHKQCVP   43 (283)
T ss_dssp             -CCCCSSCSSSCS--SBCCCCTTSCCCBCCTTEEECTTSSCEEE
T ss_pred             CCccCCCCCCCCC--CEeeCCCCCeEecCCCCcccCCCCCcccc
Confidence            4677655 56675  789999999999999998743 3344654

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=94.92  E-value=0.011  Score=34.26  Aligned_cols=34  Identities=24%  Similarity=0.738  Sum_probs=25.7

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ++++|.  ..+|.+++.|.+..++|.|.|+.||.+.
T Consensus         4 d~~~C~--~~pC~~~g~C~~~~~~~~C~C~~g~~g~   37 (317)
T 3h5c_B            4 GGSPCI--SQPCLHNGSCQDSIWGYTCTCSPGYEGS   37 (317)
T ss_dssp             --CCTT--SCCCTTTCCCCCCSSSCCCCCSSSCCSS
T ss_pred             cCCcCC--CCCCCCCCEeECCCCCeEEECCCCCcCC
Confidence            456666  4568877889999999999999998753

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=94.82  E-value=0.021  Score=36.99  Aligned_cols=47  Identities=17%  Similarity=0.451  Sum_probs=33.7

Q ss_pred             ceeecCCCCCCCCCC---CcccCCCC-CCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          20 SVYEEDARWSYSLCP---DVDECGLG-LHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        20 ~~c~c~~g~~~~~C~---~~~~c~~~-~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..|.|.+||.|..|.   +...|... ...|..++.|..    ..|.|..||.+.
T Consensus       538 g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~----g~C~C~~Gy~G~  588 (687)
T 3k6s_B          538 GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHSGYQLP  588 (687)
T ss_dssp             TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS----SCBCCSTTCCTT
T ss_pred             CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC----CEEECCCCCcCC
Confidence            379999999999996   24566532 235766677765    368999998864

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=94.76  E-value=0.019  Score=31.43  Aligned_cols=19  Identities=11%  Similarity=0.172  Sum_probs=15.8

Q ss_pred             CCcceeecCCCCCCCCCCC
Q psy9821          17 HNISVYEEDARWSYSLCPD   35 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~   35 (78)
                      .....|.|+.||.|.+|+.
T Consensus       162 v~P~~C~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          162 NERRICECPDGFHGPHCEG  180 (188)
T ss_dssp             CTTSCEECCTTCBTTTTCB
T ss_pred             CCCCcccCcCCCCCCCCcC
Confidence            4567899999999999964

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=94.57  E-value=0.014  Score=25.15  Aligned_cols=19  Identities=11%  Similarity=0.109  Sum_probs=14.7

Q ss_pred             CCcceeecCCCCCCCCCCC
Q psy9821          17 HNISVYEEDARWSYSLCPD   35 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~   35 (78)
                      ...+.|+|+.||+|..|+.
T Consensus        27 ~~~~~C~C~~gy~G~RCe~   45 (50)
T 1iox_A           27 EQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             TTEEEECCCTTEETTTTCE
T ss_pred             CCCeEEECCCCcccCCCCe
Confidence            4567889999998888853

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=94.28  E-value=0.019  Score=27.17  Aligned_cols=17  Identities=6%  Similarity=0.016  Sum_probs=13.7

Q ss_pred             CcceeecCCCCCCCCCC
Q psy9821          18 NISVYEEDARWSYSLCP   34 (78)
Q Consensus        18 ~~~~c~c~~g~~~~~C~   34 (78)
                      ..+.|.|++||+|..|+
T Consensus        60 ~~~~C~C~~GYtG~RCE   76 (79)
T 1xdt_R           60 RAPSCICHPGYHGERCH   76 (79)
T ss_dssp             TBCCEEECTTEESTTCC
T ss_pred             CCeEEEcCCCccccccc
Confidence            56788999999888874

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=94.15  E-value=0.04  Score=29.33  Aligned_cols=18  Identities=11%  Similarity=0.027  Sum_probs=15.6

Q ss_pred             CCcceeecCCCCCCCCCC
Q psy9821          17 HNISVYEEDARWSYSLCP   34 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~   34 (78)
                      .+++.|.|++||+|..|+
T Consensus       151 ~~~~~C~C~~G~~G~~Ce  168 (169)
T 2vj2_A          151 PDKYQCSCPEGYSGPNCE  168 (169)
T ss_dssp             TTCEEEECCTTCCSTTSC
T ss_pred             CCCcEeECCCCCcCcCcC
Confidence            577999999999998874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.81  E-value=0.013  Score=34.84  Aligned_cols=34  Identities=12%  Similarity=0.210  Sum_probs=19.2

Q ss_pred             CCCCCcccccccccCCcceeecCCCCC----CCCCCCc
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWS----YSLCPDV   36 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~----~~~C~~~   36 (78)
                      |.....|.+.|.+..++|.|.|++||.    +..|...
T Consensus        47 C~~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~   84 (386)
T 3v65_B           47 CAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKAL   84 (386)
T ss_dssp             -----CCTTEEC-----CCEECCTTEEECTTSSCEEEC
T ss_pred             eCCcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCc
Confidence            433456777888999999999999994    6777543

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=93.78  E-value=0.035  Score=28.22  Aligned_cols=30  Identities=10%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             CCCCCcccccccccCCcc-eeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNIS-VYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~-~c~c~~g~~~~~C~   34 (78)
                      |.++.+|.+.  ....++ .|.|+.||+|..|+
T Consensus         3 C~nggtC~~~--~~~~~~~~C~Cp~g~~G~~Ce   33 (122)
T 2fd6_A            3 CLNGGTCVSN--KYFSNIHWCNCPKKFGGQHCE   33 (122)
T ss_dssp             CCSSCEEEEC--TTTTTCEEEECCTTEESTTSC
T ss_pred             CCCcCCcCCC--cccCCCCCccCCCCCCCcccc
Confidence            7788888532  113455 89999999999994

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=93.77  E-value=0.02  Score=30.35  Aligned_cols=21  Identities=10%  Similarity=-0.015  Sum_probs=19.1

Q ss_pred             ccccccccCCcceeecCCCCC
Q psy9821           9 CAVAVAARHNISVYEEDARWS   29 (78)
Q Consensus         9 C~~~~~~~~~~~~c~c~~g~~   29 (78)
                      |.+.|.+..+++.|.|++||.
T Consensus       137 C~~~C~n~~g~~~C~C~~Gy~  157 (170)
T 1szb_A          137 CDHHCHNHLGGFYCSCRAGYV  157 (170)
T ss_dssp             SSSEEEEETTEEEEECCTTEE
T ss_pred             cCCccccCCCCEEEeCCCCcE
Confidence            888888999999999999994

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=93.71  E-value=0.039  Score=32.11  Aligned_cols=30  Identities=7%  Similarity=-0.022  Sum_probs=21.0

Q ss_pred             CCCcccccccccCC--cceeecCCCCC----CCCCC
Q psy9821           5 ISDSCAVAVAARHN--ISVYEEDARWS----YSLCP   34 (78)
Q Consensus         5 ~~~~C~~~~~~~~~--~~~c~c~~g~~----~~~C~   34 (78)
                      +|..|++.|.....  .+.|.|+.||.    +..|.
T Consensus       273 ~ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~~~c~  308 (318)
T 3sov_A          273 DNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK  308 (318)
T ss_dssp             TGGGCSSEEEECSSTTSEEEECSTTCCBCTTSSCBC
T ss_pred             CCCCcceEEecCCCCCCeEEECCCCCEECCCCCCCC
Confidence            45688888876654  57899999883    44554

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=93.71  E-value=0.035  Score=29.05  Aligned_cols=28  Identities=39%  Similarity=0.928  Sum_probs=23.8

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..+|...+.|.+..++|.|.|++||.+.
T Consensus       124 ~~~C~~~g~C~~~~~~~~c~C~~g~~G~  151 (162)
T 1g1s_A          124 DMSCSKQGECLETIGNYTCSCYPGFYGP  151 (162)
T ss_dssp             TTGGGGSEEEEECSSSEEEEECTTEEST
T ss_pred             CCCCCCCCEEecCCCCceEeCCCCCcCc
Confidence            3567667889999999999999999864

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=93.31  E-value=0.2  Score=26.04  Aligned_cols=42  Identities=26%  Similarity=0.549  Sum_probs=29.2

Q ss_pred             CCcccCCCC-CCCCCCCCEEEeCCCCeEeeCCCCceeCC-CCceee
Q psy9821          34 PDVDECGLG-LHDCHKDAKCTNTHGSYSCQCKRGFHGDG-KTSCTK   77 (78)
Q Consensus        34 ~~~~~c~~~-~~~c~~~~~C~~~~~~~~c~C~~g~~~~~-~~~c~~   77 (78)
                      .++++|... ...|.  ..|.+..+++.|.|..||...+ ...|.+
T Consensus       115 ~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          115 TDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             EECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             ccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcEECCCCCcccc
Confidence            556778653 23564  6899999999999999998532 234654

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=93.29  E-value=0.075  Score=33.60  Aligned_cols=32  Identities=25%  Similarity=0.821  Sum_probs=27.0

Q ss_pred             ccCCCCCCCCCCCCEEEe-CCCCeEeeCC-CCceeC
Q psy9821          37 DECGLGLHDCHKDAKCTN-THGSYSCQCK-RGFHGD   70 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~-~~~~~~c~C~-~g~~~~   70 (78)
                      ++|.  ..+|.+++.|.+ ..++|.|.|+ .||.+.
T Consensus         3 d~C~--~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~   36 (553)
T 1q4g_A            3 NPCC--YYPCQHQGICVRFGLDRYQCDCTRTGYSGP   36 (553)
T ss_dssp             CGGG--GCCCCTTCEEEEETTTEEEEECTTSSEETT
T ss_pred             CcCC--CCCCCCCCCcCCCCCCceEeeCCCCCcCCC
Confidence            5566  568998899999 8899999999 999864

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=92.31  E-value=0.046  Score=34.53  Aligned_cols=29  Identities=14%  Similarity=0.187  Sum_probs=22.5

Q ss_pred             CCCCCcccccccccCCcceeecC-CCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEED-ARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~-~g~~~~~C~   34 (78)
                      |.++.+|...   ..++|.|.|+ +||+|..|+
T Consensus        10 C~ngG~C~~~---~~~~y~C~C~~~G~~G~~Ce   39 (553)
T 1q4g_A           10 CQHQGICVRF---GLDRYQCDCTRTGYSGPNCT   39 (553)
T ss_dssp             CCTTCEEEEE---TTTEEEEECTTSSEETTTTC
T ss_pred             CCCCCCcCCC---CCCceEeeCCCCCcCCCCCC
Confidence            6666666431   5678999999 999999995

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=92.29  E-value=0.065  Score=27.94  Aligned_cols=23  Identities=4%  Similarity=-0.115  Sum_probs=19.6

Q ss_pred             CcccccccccCCcceeecCCCCC
Q psy9821           7 DSCAVAVAARHNISVYEEDARWS   29 (78)
Q Consensus         7 ~~C~~~~~~~~~~~~c~c~~g~~   29 (78)
                      ..|.+.|.+..+++.|.|.+||.
T Consensus       126 ~~C~~~C~n~~g~~~C~C~~Gy~  148 (159)
T 1nzi_A          126 VPCSHFCNNFIGGYFCSCPPEYF  148 (159)
T ss_dssp             CCSSSEEEEETTEEEEECCTTCE
T ss_pred             CCCCCcccCcCCCEEEecCCCcE
Confidence            45777888889999999999994

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=92.26  E-value=0.077  Score=27.81  Aligned_cols=30  Identities=10%  Similarity=0.254  Sum_probs=21.4

Q ss_pred             CCCCCcccccccccCCcc-eeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNIS-VYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~-~c~c~~g~~~~~C~   34 (78)
                      |.++.+|..  ..+...+ .|.|+.||.|.+|.
T Consensus        15 C~NGGtC~~--~~~~s~~~~C~Cp~g~~G~~Ce   45 (145)
T 2i9a_A           15 CLNGGTCVS--NKYFSNIHWCNCPKKFGGQHCE   45 (145)
T ss_dssp             CCTTCEEEE--CSSSTTCEEEECCTTEESTTSC
T ss_pred             CCCCCCcCC--CccccCCccccCCCCCCCCcee
Confidence            677777742  2233444 79999999999994

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=92.06  E-value=0.16  Score=32.44  Aligned_cols=32  Identities=28%  Similarity=0.914  Sum_probs=25.5

Q ss_pred             ccCCCCCCCCCCCCEEEe-CCCCeEeeCC-CCceeC
Q psy9821          37 DECGLGLHDCHKDAKCTN-THGSYSCQCK-RGFHGD   70 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~-~~~~~~c~C~-~g~~~~   70 (78)
                      ++|.  ..+|.+++.|.. ..+.|.|.|+ .||.+.
T Consensus         2 d~C~--s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~   35 (587)
T 3nt1_A            2 NPCC--SNPCQNRGECMSTGFDQYKCDCTRTGFYGE   35 (587)
T ss_dssp             CTTT--TCCCCTTCEEEEEETTEEEEECTTSSEETT
T ss_pred             CCCC--CCCCCCCCEeeCCCCCCeEEecCCCCccCC
Confidence            4565  568998899996 4588999999 899864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=91.77  E-value=0.092  Score=30.28  Aligned_cols=23  Identities=4%  Similarity=-0.062  Sum_probs=15.6

Q ss_pred             CCcccccccccC------CcceeecCCCC
Q psy9821           6 SDSCAVAVAARH------NISVYEEDARW   28 (78)
Q Consensus         6 ~~~C~~~~~~~~------~~~~c~c~~g~   28 (78)
                      |..|++.|....      ..+.|.|+.||
T Consensus       277 ng~Cs~~C~~~p~~~~~~~~~~C~C~~g~  305 (316)
T 1ijq_A          277 NGGCQYLCLPAPQINPHSPKFTCACPDGM  305 (316)
T ss_dssp             GGGCSSEEEECCCCSTTCCSEEEECCTTC
T ss_pred             CCCcCcccCCCccccCCCCCeEeeCCCCC
Confidence            456777776543      46778888877

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=91.75  E-value=0.062  Score=30.02  Aligned_cols=47  Identities=21%  Similarity=0.375  Sum_probs=32.7

Q ss_pred             ceeecCCC------CCCCCCC-CcccCCCC-CCCCCCC--CEEEeCCCCeEeeCCCCceeC
Q psy9821          20 SVYEEDAR------WSYSLCP-DVDECGLG-LHDCHKD--AKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        20 ~~c~c~~g------~~~~~C~-~~~~c~~~-~~~c~~~--~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..|.|.+|      |+|..|+ +...|... ..+|..+  +.|..    -.|.|..||.+.
T Consensus       154 g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~----g~C~C~~G~~G~  210 (217)
T 2p28_B          154 GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGS  210 (217)
T ss_dssp             TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEET----TEEEECTTEEST
T ss_pred             CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeC----CeeECCCCCccC
Confidence            46999999      5899995 34566531 1247655  77874    279999999875

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=91.53  E-value=0.058  Score=34.37  Aligned_cols=29  Identities=10%  Similarity=0.203  Sum_probs=21.6

Q ss_pred             CCCCCcccccccccCCcceeecC-CCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEED-ARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~-~g~~~~~C~   34 (78)
                      |.++.+|..   ...++|.|.|+ +||+|..|+
T Consensus         9 C~ngG~C~~---~~~~~y~C~C~~~G~~G~~Ce   38 (587)
T 3nt1_A            9 CQNRGECMS---TGFDQYKCDCTRTGFYGENCT   38 (587)
T ss_dssp             CCTTCEEEE---EETTEEEEECTTSSEETTTTC
T ss_pred             CCCCCEeeC---CCCCCeEEecCCCCccCCCCC
Confidence            556666642   23468999999 999999996

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=91.36  E-value=0.1  Score=33.85  Aligned_cols=48  Identities=19%  Similarity=0.430  Sum_probs=32.4

Q ss_pred             cceeecCCCCCCCCCC-Ccc---------cCCCCC--CCCCCCCEEEeCCCCeEeeCC------CCceeC
Q psy9821          19 ISVYEEDARWSYSLCP-DVD---------ECGLGL--HDCHKDAKCTNTHGSYSCQCK------RGFHGD   70 (78)
Q Consensus        19 ~~~c~c~~g~~~~~C~-~~~---------~c~~~~--~~c~~~~~C~~~~~~~~c~C~------~g~~~~   70 (78)
                      ...|.|++||.|..|+ ..+         .|....  ..|..++.|..  +  .|.|.      .||.+.
T Consensus       445 ~g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~--G--~C~C~~~~~~~~G~~G~  510 (687)
T 3k6s_B          445 CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC--G--QCLCHTSDVPGKLIYGQ  510 (687)
T ss_dssp             SSSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET--T--EEEECCCCSTTCCEEST
T ss_pred             CCEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC--C--EEEcCCCCCCCCCcccc
Confidence            3579999999999996 111         354321  24766778873  2  79999      888764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=91.09  E-value=0.2  Score=31.87  Aligned_cols=41  Identities=20%  Similarity=0.449  Sum_probs=29.4

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC-CCCceee
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      +.++|...++.|.  ..|.+.++.+.|.|+.||... ....|..
T Consensus       577 ~~~~C~~~ng~C~--~~C~~~~~~~~C~C~~g~~l~~d~~~C~~  618 (619)
T 3s94_A          577 GSNPCAEENGGCS--HLCLYRPQGLRCACPIGFELISDMKTCIV  618 (619)
T ss_dssp             CCCGGGSGGGGCS--SEEEEETTEEEEECCTTCEECSSTTCEEC
T ss_pred             ccccCCCCCCChh--HhhccCCCCeEEECCCCCEECCCCCcCCC
Confidence            4566655455674  789999999999999999743 3344764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.82  E-value=0.31  Score=31.09  Aligned_cols=40  Identities=20%  Similarity=0.627  Sum_probs=27.4

Q ss_pred             CcccCCCCCCCCCCCCEEEeCC-CCeEeeCCCCceeC-CCCcee
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTH-GSYSCQCKRGFHGD-GKTSCT   76 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~-~~~~c~C~~g~~~~-~~~~c~   76 (78)
                      +.++|....+.|.  ..|.+.+ ++|.|.|+.||... ....|.
T Consensus       264 ~~n~C~~~ng~C~--~~C~~~~~~~~~C~C~~g~~l~~d~~~C~  305 (628)
T 4a0p_A          264 GWNECASSNGHCS--HLCLAVPVGGFVCGCPAHYSLNADNRTCS  305 (628)
T ss_dssp             CCCTTTTTGGGCS--SEEEEETTTEEEEECSTTCEECTTSSCEE
T ss_pred             cceEeccCCCCcc--hhhhcCCCCCeeEEcCCCcEecccCCcCc
Confidence            4566765445564  7899888 88999999998743 233464

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.66  E-value=0.1  Score=33.29  Aligned_cols=30  Identities=17%  Similarity=0.181  Sum_probs=24.6

Q ss_pred             CCcccccccccC-CcceeecCCCC----CCCCCCC
Q psy9821           6 SDSCAVAVAARH-NISVYEEDARW----SYSLCPD   35 (78)
Q Consensus         6 ~~~C~~~~~~~~-~~~~c~c~~g~----~~~~C~~   35 (78)
                      |..|++.|.+.. +++.|.|+.||    .+..|.+
T Consensus       272 ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~  306 (628)
T 4a0p_A          272 NGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA  306 (628)
T ss_dssp             GGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC
T ss_pred             CCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc
Confidence            568999999888 89999999999    3566743

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=90.55  E-value=0.59  Score=26.92  Aligned_cols=40  Identities=23%  Similarity=0.511  Sum_probs=25.9

Q ss_pred             CcccCCCC---CCCCCCCCEEEeCC------CCeEeeCCCCceeC-CCCcee
Q psy9821          35 DVDECGLG---LHDCHKDAKCTNTH------GSYSCQCKRGFHGD-GKTSCT   76 (78)
Q Consensus        35 ~~~~c~~~---~~~c~~~~~C~~~~------~~~~c~C~~g~~~~-~~~~c~   76 (78)
                      +.++|...   .+.|.  ..|...+      +++.|.|+.|+... ....|.
T Consensus       266 ~~n~C~~~~~~ng~Cs--~~C~~~p~~~~~~~~~~C~C~~g~~l~~d~~~C~  315 (316)
T 1ijq_A          266 GVNWCERTTLSNGGCQ--YLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL  315 (316)
T ss_dssp             CCCTTSSSSSGGGGCS--SEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             ccccccccccCCCCcC--cccCCCccccCCCCCeEeeCCCCCEECCCCCccC
Confidence            34556543   34564  7898775      57999999999743 333464

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=90.43  E-value=0.095  Score=33.32  Aligned_cols=24  Identities=8%  Similarity=-0.025  Sum_probs=21.6

Q ss_pred             CCCcccccccccCCcceeecCCCC
Q psy9821           5 ISDSCAVAVAARHNISVYEEDARW   28 (78)
Q Consensus         5 ~~~~C~~~~~~~~~~~~c~c~~g~   28 (78)
                      +|..|++.|.+..+.+.|.|+.||
T Consensus       584 ~ng~C~~~C~~~~~~~~C~C~~g~  607 (619)
T 3s94_A          584 ENGGCSHLCLYRPQGLRCACPIGF  607 (619)
T ss_dssp             GGGGCSSEEEEETTEEEEECCTTC
T ss_pred             CCCChhHhhccCCCCeEEECCCCC
Confidence            456899999999999999999999

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=87.99  E-value=0.71  Score=26.79  Aligned_cols=39  Identities=23%  Similarity=0.664  Sum_probs=25.1

Q ss_pred             ccCCCCCCCCCCCCEEEeCCC--CeEeeCCCCcee-CCCCceee
Q psy9821          37 DECGLGLHDCHKDAKCTNTHG--SYSCQCKRGFHG-DGKTSCTK   77 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~~~~--~~~c~C~~g~~~-~~~~~c~~   77 (78)
                      ++|......|.  ..|...++  .+.|.|+.||.. .....|.+
T Consensus       268 n~C~~~ng~Cs--~~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~  309 (318)
T 3sov_A          268 NPCGIDNGGCS--HLCLMSPVKPFYQCACPTGVKLLENGKTCKD  309 (318)
T ss_dssp             CTTTTTGGGCS--SEEEECSSTTSEEEECSTTCCBCTTSSCBCC
T ss_pred             cccccCCCCcc--eEEecCCCCCCeEEECCCCCEECCCCCCCCC
Confidence            44543344563  68988765  689999999863 33334654

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=86.26  E-value=0.14  Score=31.48  Aligned_cols=14  Identities=21%  Similarity=0.183  Sum_probs=0.0

Q ss_pred             eeecCCCCCCCCCC
Q psy9821          21 VYEEDARWSYSLCP   34 (78)
Q Consensus        21 ~c~c~~g~~~~~C~   34 (78)
                      .|+|++||.|..|+
T Consensus       384 ~C~C~~G~~G~~Ce  397 (426)
T 3zyj_B          384 RCLCPAAYTGILCE  397 (426)
T ss_dssp             --------------
T ss_pred             CCcCCCCCcCCCCc
Confidence            56777777776664

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=83.91  E-value=0.31  Score=25.14  Aligned_cols=23  Identities=17%  Similarity=0.105  Sum_probs=18.1

Q ss_pred             cccccCCcceeecCCCCCCCCCC
Q psy9821          12 AVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus        12 ~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      .|.+....|.|.|.+||+|..|+
T Consensus       132 ~C~~~~~~~~c~C~~g~~g~~Ce  154 (157)
T 1g1t_A          132 ECVETINNYTCKCDPGFSGLKCE  154 (157)
T ss_dssp             EEEEETTEEEEEECTTEESTTSC
T ss_pred             EeecCCCCeeEECCCCccCcccc
Confidence            45566788889999999888884

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=83.65  E-value=2.3  Score=27.11  Aligned_cols=37  Identities=38%  Similarity=0.803  Sum_probs=27.2

Q ss_pred             ccCCCC-CCCCCCCCEEEeCC-CCeEeeCCCCceeCCCC
Q psy9821          37 DECGLG-LHDCHKDAKCTNTH-GSYSCQCKRGFHGDGKT   73 (78)
Q Consensus        37 ~~c~~~-~~~c~~~~~C~~~~-~~~~c~C~~g~~~~~~~   73 (78)
                      ..|..+ .++|.....|+... +.|.|.|+.||.+++..
T Consensus        19 ~~c~~~~~~~c~~~a~C~~~~~~~~~c~C~~G~ag~G~~   57 (551)
T 3fby_A           19 RFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGIL   57 (551)
T ss_dssp             CBCTTSSBCCCCTTEEEEECTTSCEEEEECTTEESSSSS
T ss_pred             ccCCCCCCCCCCCCCeeEeCCCCCEecCCCCCCCCCCcc
Confidence            334433 36788788898764 56789999999987765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.38  E-value=0.26  Score=30.39  Aligned_cols=17  Identities=12%  Similarity=0.083  Sum_probs=0.0

Q ss_pred             ceeecCCCCCCCCCCCc
Q psy9821          20 SVYEEDARWSYSLCPDV   36 (78)
Q Consensus        20 ~~c~c~~g~~~~~C~~~   36 (78)
                      +.|.|++||+|..|+..
T Consensus       440 ~~C~C~~G~~G~~C~~~  456 (463)
T 2wg3_C          440 NKCLCKKGYLGPQCEQV  456 (463)
T ss_dssp             -----------------
T ss_pred             CEEECCCCcccCCCCCC
Confidence            68999999999888643

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=80.47  E-value=2.8  Score=25.13  Aligned_cols=31  Identities=26%  Similarity=0.799  Sum_probs=24.7

Q ss_pred             ccCCCCCCCCCCCCEEEeCCCCeEeeCCC-Ccee
Q psy9821          37 DECGLGLHDCHKDAKCTNTHGSYSCQCKR-GFHG   69 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~~~~~~~c~C~~-g~~~   69 (78)
                      +.|.  ..+|.+++.|......|.|.|+. +|.+
T Consensus       186 ~~C~--~~pC~n~g~C~~~~~~~~C~C~~~~~~G  217 (410)
T 3asi_A          186 TTCQ--EDSCSNQGVCLQQWDGFSCDCSMTSFSG  217 (410)
T ss_dssp             SCCC--TTSSSTTCEEEECSSSEEEECTTTSEES
T ss_pred             CCcc--cccCCCCCEecCCCCCceEeccCCcccC
Confidence            4454  46788889999999999999996 7754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	3e-09
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	8e-08
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	3e-07
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	8e-07
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	1e-05
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	1e-05
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	3e-05
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	1e-04
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	3e-04
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	6e-04
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	6e-04
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	0.001
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	0.001
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	0.002
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	0.003

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (108), Expect = 3e-09
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 39 CGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
          C    H C   A+C +    + C+C   + G+G+ 
Sbjct: 2  CANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ 36

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 8e-08
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
          DVDEC LG + C    KC NT GS+ CQC +G+ G 
Sbjct: 2  DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 3e-07
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
            D+DEC       H   +C NT GSY C+C  G+   G  
Sbjct: 2  AVDMDECKEPDVCKH--GQCINTDGSYRCECPFGYILAGNE 40

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 8e-07
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
          D+DEC +    C    +C NT G + C+C  G+      
Sbjct: 2  DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMM 39

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
          D+DEC      C    KC NT GS+ C+C  G+  + D + 
Sbjct: 2  DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDTRV 41

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)

Query: 35 DVDECGLGLHDCHKDAK------CTNTHGSYSCQCKRGF--HGDGKT 73
          D+DEC        +D +      C N  G Y C C+ G+    D  +
Sbjct: 3  DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS 49

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
          D+DEC      C     C NT GSY C+C  G     +   
Sbjct: 1  DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNISA 40

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
          DV+EC            C NT GSY C C   F  + 
Sbjct: 2  DVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNP 36

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (74), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTS 74
          D+DEC  G   C     C N  G++ C C       G+  
Sbjct: 1  DIDECENG-GFCS--GVCHNLPGTFECICGPDSALAGQIG 37

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (73), Expect = 6e-04
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 36 VDECGLGLHDCHK-DAKCTNTHGSYSCQCKRGF--HGDGKT 73
          +DEC +   +    D  C N  G + C C+ G+  H + +T
Sbjct: 1  IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT 41

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.2 bits (73), Expect = 6e-04
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 36 VDECGLGLHDCHK-DAKCTNTHGSYSCQCKRGF--HGDGKT 73
          VDEC   L D    D  C N  G Y C C+ G+  H +  T
Sbjct: 1  VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHT 41

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (71), Expect = 0.001
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
          D D+C    + C     C +   SY C C  GF G 
Sbjct: 2  DGDQCES--NPCLNGGSCKDDINSYECWCPFGFEGK 35

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (71), Expect = 0.001
 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC 75
           +EC      C     C +    Y C C  GF    +  C
Sbjct: 2  TNECLDNNGGC--SHVCNDLKIGYECLCPDGFQLVAQRRC 39

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.9 bits (70), Expect = 0.002
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
          +DEC            C N  G Y CQC+ GF      K 
Sbjct: 1  IDEC---QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 30.0 bits (68), Expect = 0.003
 Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
          D D+C      C     C +   SY C C   F G 
Sbjct: 1  DGDQCAS--SPCQNGGSCKDQLQSYICFCLPAFEGR 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.78
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	98.38
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.32
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.3
d1szba2	45	Mannose-binding protein associated serine protease	98.29
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.27
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.27
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.26
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.23
d1nt0a3	45	Mannose-binding protein associated serine protease	98.22
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.22
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.07
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.06
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.02
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	97.88
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	97.86
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.86
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.84
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.83
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	97.82
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.82
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	97.79
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	97.79
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.73
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	97.73
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	97.73
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.72
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.69
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.68
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.64
d1nt0a3	45	Mannose-binding protein associated serine protease	97.64
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	97.58
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.51
d1szba2	45	Mannose-binding protein associated serine protease	97.49
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.48
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.47
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.46
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.46
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.27
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.22
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.18
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.14
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	97.1
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.09
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.09
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.01
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	96.99
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	96.94
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	96.88
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	96.88
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	96.76
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	96.68
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	96.43
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.35
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	96.29
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	96.06
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	96.02
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	95.73
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	95.5
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	95.4
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	94.89
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	94.49
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	94.28
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	90.49
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	90.18
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	87.78
d1dx5i2	35	Thrombomodulin, different EGF-like domains {Human	83.0
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	82.94

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.2e-09  Score=45.49  Aligned_cols=43  Identities=35%  Similarity=0.672  Sum_probs=34.1

Q ss_pred             CCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCCCceee
Q psy9821          32 LCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK   77 (78)
Q Consensus        32 ~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c~~   77 (78)
                      .|.+++||......+  .+.|+|++|+|.|.|+.||..++.. |.|
T Consensus         1 sCvDidEC~~~~~~~--~~~C~Nt~Gsy~C~C~~Gy~~~g~~-C~D   43 (43)
T d1emoa1           1 SAVDMDECKEPDVCK--HGQCINTDGSYRCECPFGYILAGNE-CVD   43 (43)
T ss_dssp             CCCCCCSSSSTTSCS--SSCCCCCSSCCCCCCCTTEEESSSC-EEE
T ss_pred             CCcceeccCCcCCCC--CCEeECCCCCeEeECCCCcccCCCc-ccC
Confidence            478999998654433  4789999999999999999987654 654

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=9.4e-09  Score=42.51  Aligned_cols=37  Identities=51%  Similarity=1.131  Sum_probs=32.7

Q ss_pred             CCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          34 PDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        34 ~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +++++|.....+|..+++|++..++|.|.|+.||.+.
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~   37 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP   37 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEEST
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCC
Confidence            3678888767889999999999999999999999865

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.7e-08  Score=40.24  Aligned_cols=42  Identities=33%  Similarity=0.647  Sum_probs=31.4

Q ss_pred             CCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCC-Cceee
Q psy9821          34 PDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGK-TSCTK   77 (78)
Q Consensus        34 ~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~-~~c~~   77 (78)
                      ++++||......+  .+.|+|++++|.|.|+.||..... ..|.|
T Consensus         1 TDidEC~~~~~~c--~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~D   43 (43)
T d1uzka1           1 TDVNECLDPTTCI--SGNCVNTPGSYICDCPPDFELNPTRVGCVD   43 (43)
T ss_dssp             CCCCGGGSTTSSB--TSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred             CCccccCCCCcCc--CCEeECCCCCEEEecCCCCEECCCCCcccC
Confidence            3688897654444  479999999999999999986533 34654

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.2e-08  Score=40.51  Aligned_cols=36  Identities=33%  Similarity=0.952  Sum_probs=30.5

Q ss_pred             CCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          34 PDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        34 ~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ++++||......|. .+.|+|++|+|.|.|+.||.+.
T Consensus         1 TDidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred             CcccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence            47889987777775 4689999999999999999875

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.2e-08  Score=40.17  Aligned_cols=35  Identities=40%  Similarity=0.843  Sum_probs=28.2

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +++||...+..|. ++.|+|++|+|.|.|+.||...
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l~   35 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLS   35 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCCC
T ss_pred             CccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeEC
Confidence            4677766667775 4699999999999999999854

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=4.4e-08  Score=39.96  Aligned_cols=34  Identities=26%  Similarity=0.884  Sum_probs=28.7

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCceeCCCCceee
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK   77 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c~~   77 (78)
                      .+.|...+.|++.+++|.|.|+.||.+++.. |++
T Consensus         6 ~~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~~-C~~   39 (40)
T d1gl4a2           6 RHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVA   39 (40)
T ss_dssp             GGGSCTTEEEEECSSCEEEEECTTEEECSSS-EEE
T ss_pred             CCCCCCCCEeecCCCCeEeECCCCCcCCCCE-eeC
Confidence            3557667899999999999999999999876 653

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.2e-06  Score=37.61  Aligned_cols=43  Identities=30%  Similarity=0.654  Sum_probs=29.4

Q ss_pred             CCcccCCCCCCCCC------CCCEEEeCCCCeEeeCCCCceeCCC-Ccee
Q psy9821          34 PDVDECGLGLHDCH------KDAKCTNTHGSYSCQCKRGFHGDGK-TSCT   76 (78)
Q Consensus        34 ~~~~~c~~~~~~c~------~~~~C~~~~~~~~c~C~~g~~~~~~-~~c~   76 (78)
                      .+++||......+.      ....|+|++|+|.|.|+.||..... ..|.
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCcee
Confidence            35677765444332      2358999999999999999985432 2354

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.1e-08  Score=40.39  Aligned_cols=36  Identities=39%  Similarity=0.829  Sum_probs=28.5

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG   71 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~   71 (78)
                      +++||......|. .+.|+|++|+|.|.|+.||....
T Consensus         2 DinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l~~   37 (43)
T d1uzka2           2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNE   37 (43)
T ss_dssp             ECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCBCT
T ss_pred             CcccccCCCCCcC-CCEEECCCCCeEeECCCCCeECc
Confidence            5778875566664 36899999999999999998543

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=9.1e-07  Score=35.71  Aligned_cols=33  Identities=36%  Similarity=0.943  Sum_probs=28.3

Q ss_pred             cccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        36 ~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +++|.  ..+|.+++.|++..++|.|.|+.||.+.
T Consensus         1 Id~C~--~~PC~n~g~C~~~~~~y~C~C~~G~~G~   33 (39)
T d2vj3a2           1 VNECV--SNPCQNDATCLDQIGEFQCICMPGYEGV   33 (39)
T ss_dssp             CCTTT--TCCCCSSCEEEECSSCEEEECCTTEESS
T ss_pred             CcCCc--CCCCCCCCEEECCCCCEEEeCCCCCccC
Confidence            35676  5689989999999999999999999875

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1e-06  Score=36.64  Aligned_cols=42  Identities=29%  Similarity=0.779  Sum_probs=28.3

Q ss_pred             cccCCCCCCCC-CCCCEEEeCCCCeEeeCCCCceeC-CCCceee
Q psy9821          36 VDECGLGLHDC-HKDAKCTNTHGSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        36 ~~~c~~~~~~c-~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      ++||....... .-...|++++++|.|.|+.||... ....|.|
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            35665443322 224789999999999999999843 3334765

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.8e-07  Score=35.93  Aligned_cols=34  Identities=35%  Similarity=0.860  Sum_probs=29.5

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ++++|.  ..+|.++++|++..++|.|.|+.||.+.
T Consensus         2 d~d~C~--~~PC~ngg~C~~~~~~y~C~C~~g~~G~   35 (39)
T d1edmb_           2 DGDQCE--SNPCLNGGSCKDDINSYECWCPFGFEGK   35 (39)
T ss_dssp             CCCTTT--TCCCCTTCEEEEETTEEEEECCTTCCST
T ss_pred             ccccCC--CCCCCCCcEEEcCCCCEEEECCCCCCCC
Confidence            457777  6789999999999999999999999864

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.7e-07  Score=38.34  Aligned_cols=26  Identities=12%  Similarity=0.199  Sum_probs=21.3

Q ss_pred             CCCCCcccccccccCCcceeecCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARW   28 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~   28 (78)
                      |..+..|.+.|.+..++|.|.|++||
T Consensus         4 C~~~~~C~~~C~n~~Gsy~C~C~~Gy   29 (41)
T d1i0ua2           4 CQDPDTCSQLCVNLEGGYKCQCEEGF   29 (41)
T ss_dssp             TTTTTSCSSCEECSSSCCEECCCTTE
T ss_pred             CCCCCCCCCEeECCCCCEEeECCCCC
Confidence            55566788888888888888888888

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.7e-07  Score=36.81  Aligned_cols=33  Identities=27%  Similarity=0.598  Sum_probs=26.5

Q ss_pred             cccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        36 ~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      .++|....+.|.  ..|++++++|.|.|+.||...
T Consensus         2 ~neC~~~nggC~--h~C~n~~g~~~C~C~~Gy~L~   34 (40)
T d3bpse1           2 TNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLV   34 (40)
T ss_dssp             SCGGGTGGGGCS--SEEEECSSSEEEECCTTCCEE
T ss_pred             cccCCCCCCCCc--CEEEcCCCCEEEECCCCCEEC
Confidence            467766566775  799999999999999999753

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.9e-06  Score=35.13  Aligned_cols=39  Identities=38%  Similarity=0.923  Sum_probs=29.0

Q ss_pred             cccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCC-Cceee
Q psy9821          36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGK-TSCTK   77 (78)
Q Consensus        36 ~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~-~~c~~   77 (78)
                      ++||.. .+.|.  ..|.++.++|.|.|+.||..... ..|.+
T Consensus         1 idEC~~-~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           1 IDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CCTTTT-TTSCS--SCEECSSSCCEECCCTTEEECTTTCCEEE
T ss_pred             CccCCC-CCCCC--CEeECCCCCEEeECCCCCeECCCCCcccc
Confidence            467764 45674  78999999999999999985432 34765

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=1.2e-06  Score=36.38  Aligned_cols=42  Identities=38%  Similarity=0.773  Sum_probs=25.8

Q ss_pred             cccCCCCCCC-CCCCCEEEeCCCCeEeeCCCCceeC-CCCceee
Q psy9821          36 VDECGLGLHD-CHKDAKCTNTHGSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        36 ~~~c~~~~~~-c~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      ++||...... ..-...|++++++|+|.|+.||... ....|..
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~   44 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSA   44 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCcccc
Confidence            3566543322 1224789999999999999999843 2334654

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.22  E-value=7e-07  Score=35.67  Aligned_cols=34  Identities=32%  Similarity=0.801  Sum_probs=29.1

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ++++|.  ..+|..++.|++..+.|.|.|+.+|.+.
T Consensus         1 D~d~C~--~~PC~ngg~C~~~~~~y~C~C~~g~~G~   34 (37)
T d2c4fl1           1 DGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFEGR   34 (37)
T ss_dssp             TCCGGG--GCCCCTTCEEEEETTEEEEECCTTEEST
T ss_pred             CcccCC--CCCCCCCCEEECCCCCeEEECCCCCcCC
Confidence            356776  5789989999999999999999999864

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.4e-06  Score=32.58  Aligned_cols=31  Identities=29%  Similarity=0.952  Sum_probs=26.6

Q ss_pred             cCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          38 ECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        38 ~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +|.  ..+|.++++|++..++|.|.|+.+|.+.
T Consensus         2 ~C~--~~PC~ngg~C~~~~~~y~C~C~~g~~G~   32 (35)
T d2vj3a3           2 ECA--SSPCLHNGRCLDKINEFQCECPTGFTGH   32 (35)
T ss_dssp             TTT--TCCSTTTCEEEECSSCEEEECCTTEESS
T ss_pred             CCC--CCCCCCCcEEECCCCCeEEECCCCCCCC
Confidence            454  5689989999999999999999999864

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=5.4e-07  Score=36.55  Aligned_cols=33  Identities=30%  Similarity=0.612  Sum_probs=25.8

Q ss_pred             CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +++||.. .+.|.  ..|+|++++|.|.|++||...
T Consensus         1 DidEC~~-~~~C~--~~C~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3           1 DIDECEN-GGFCS--GVCHNLPGTFECICGPDSALA   33 (40)
T ss_dssp             ECCHHHH-CSSCS--SEEEECSSSEEEEECSSSSCE
T ss_pred             CccccCC-CcCcc--CEeeCCCCCeEeECCCCCeeC
Confidence            3567754 36675  789999999999999999753

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=9.6e-07  Score=36.21  Aligned_cols=28  Identities=11%  Similarity=0.153  Sum_probs=22.1

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++++|    .+..++|.|.|++||+|..|+
T Consensus        13 C~n~g~C----~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1          13 CEHAGKC----INTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             SSTTCEE----EECSSSEEEECCTTEESTTSC
T ss_pred             CCCCcEe----ECCCCCEEeECCCCCcCCCCc
Confidence            4555555    467889999999999998884

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=6.9e-06  Score=33.03  Aligned_cols=31  Identities=35%  Similarity=1.048  Sum_probs=26.5

Q ss_pred             cCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          38 ECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        38 ~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      +|.  ..+|..++.|++..+.|.|.|+.||.+.
T Consensus         2 ~C~--~~PC~ngg~C~~~~~~y~C~C~~G~~G~   32 (39)
T d1xkba1           2 QCE--TSPCQNQGKCKDGLGEYTCTCLEGFEGK   32 (39)
T ss_dssp             TTT--TCCCCSSCEECCCSSSCCEECCTTEETT
T ss_pred             cCC--CCCCCCCcEEECCCCCEEEECCCCCCcC
Confidence            455  5689888999999999999999999865

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.2e-06  Score=33.67  Aligned_cols=28  Identities=18%  Similarity=0.192  Sum_probs=22.2

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++++|.    ...++|.|.|++||.|..|+
T Consensus        11 C~ngg~C~----~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_          11 CLNGGSCK----DDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCTTCEEE----EETTEEEEECCTTCCSTTSC
T ss_pred             CCCCcEEE----cCCCCEEEECCCCCCCCCCC
Confidence            56666654    55689999999999999884

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.3e-05  Score=31.90  Aligned_cols=37  Identities=27%  Similarity=0.564  Sum_probs=25.7

Q ss_pred             cCCC-CCCCCCCCCEEEeCCCCeEeeCCCCceeC-CCCcee
Q psy9821          38 ECGL-GLHDCHKDAKCTNTHGSYSCQCKRGFHGD-GKTSCT   76 (78)
Q Consensus        38 ~c~~-~~~~c~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~   76 (78)
                      ||.. ..+.|.  ..|++++++|+|.|+.||... ....|.
T Consensus         2 EC~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2           2 ECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMKNCG   40 (42)
T ss_dssp             TTTC-CCCCSS--SEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             CCCCCCCcCCC--CEeecCCCCEEEeCCCCCEECCCCCeec
Confidence            4542 235674  789999999999999999743 223454

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=7.8e-06  Score=33.20  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             CCCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           2 LCFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         2 ~c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      -|.++.+|...  .....|.|+|++||+|..|+
T Consensus         5 PC~ngG~C~~~--~~~~~y~C~C~~g~~G~~Ce   35 (41)
T d1tpga1           5 RCFNGGTCQQA--LYFSDFVCQCPEGFAGKSCE   35 (41)
T ss_dssp             CSCTTCEEEEE--SSSSCEEEECCTTCBSSSCC
T ss_pred             CCCCCCEEecC--CCCCCeEECCCCCCCCCCcC
Confidence            47788888632  22467999999999999994

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.2e-06  Score=34.22  Aligned_cols=24  Identities=4%  Similarity=-0.021  Sum_probs=22.1

Q ss_pred             CCCcccccccccCCcceeecCCCC
Q psy9821           5 ISDSCAVAVAARHNISVYEEDARW   28 (78)
Q Consensus         5 ~~~~C~~~~~~~~~~~~c~c~~g~   28 (78)
                      .+..|.+.|.+..++|.|.|+.||
T Consensus         7 ~~~~C~~~C~n~~Gsy~C~C~~Gy   30 (42)
T d1nzia2           7 VDVPCSHFCNNFIGGYFCSCPPEY   30 (42)
T ss_dssp             CCCCSSSEEEEETTEEEEECCTTC
T ss_pred             CCcCCCCEeecCCCCEEEeCCCCC
Confidence            356899999999999999999999

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.82  E-value=2.5e-06  Score=33.97  Aligned_cols=29  Identities=14%  Similarity=0.150  Sum_probs=22.6

Q ss_pred             CCCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           2 LCFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         2 ~c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      -|.++++|.    ....+|.|+|++||+|..|+
T Consensus         9 PC~ngg~C~----~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           9 PCQNGGSCK----DQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             CCCTTCEEE----EETTEEEEECCTTEESTTSC
T ss_pred             CCCCCCEEE----CCCCCeEEECCCCCcCCCCC
Confidence            366666664    56788999999999998874

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.82  E-value=3.6e-06  Score=35.84  Aligned_cols=35  Identities=6%  Similarity=0.082  Sum_probs=29.1

Q ss_pred             CCCcccccccccCCcceeecCCCC----CCCCCCCcccC
Q psy9821           5 ISDSCAVAVAARHNISVYEEDARW----SYSLCPDVDEC   39 (78)
Q Consensus         5 ~~~~C~~~~~~~~~~~~c~c~~g~----~~~~C~~~~~c   39 (78)
                      +|..|++.|.+..+++.|.|+.||    ++..|.+.+++
T Consensus         4 ~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_           4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence            567899999999999999999999    46778766554

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4e-06  Score=33.73  Aligned_cols=28  Identities=11%  Similarity=0.109  Sum_probs=22.2

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++.+|.    +..++|.|.|++||.|..|+
T Consensus         9 C~n~g~C~----~~~~~y~C~C~~G~~G~~Ce   36 (39)
T d2vj3a2           9 CQNDATCL----DQIGEFQCICMPGYEGVHCE   36 (39)
T ss_dssp             CCSSCEEE----ECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCEEE----CCCCCEEEeCCCCCccCcCe
Confidence            55666654    55789999999999999884

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.6e-06  Score=33.29  Aligned_cols=28  Identities=11%  Similarity=0.115  Sum_probs=22.4

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++.+|.    ...+.|.|.|++||+|..|+
T Consensus         8 C~ngg~C~----~~~~~y~C~C~~G~~G~~Ce   35 (39)
T d1xkba1           8 CQNQGKCK----DGLGEYTCTCLEGFEGKNCE   35 (39)
T ss_dssp             CCSSCEEC----CCSSSCCEECCTTEETTTTC
T ss_pred             CCCCcEEE----CCCCCEEEECCCCCCcCcCe
Confidence            56666664    56788999999999999985

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.9e-06  Score=34.33  Aligned_cols=27  Identities=7%  Similarity=-0.068  Sum_probs=23.3

Q ss_pred             CCCCCcccccccccCCcceeecCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWS   29 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~   29 (78)
                      |..+..|.+.|.+..++|.|.|++||.
T Consensus         5 C~~~~~C~~~C~N~~Gsy~C~C~~Gy~   31 (40)
T d1dx5i3           5 CENGGFCSGVCHNLPGTFECICGPDSA   31 (40)
T ss_dssp             HHHCSSCSSEEEECSSSEEEEECSSSS
T ss_pred             cCCCcCccCEeeCCCCCeEeECCCCCe
Confidence            334567999999999999999999995

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=5.7e-06  Score=32.51  Aligned_cols=28  Identities=21%  Similarity=0.413  Sum_probs=22.0

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++++|.    ....+|.|.|+.||.|..|+
T Consensus         8 C~ngg~C~----~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           8 CLHNGRCL----DKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             STTTCEEE----ECSSCEEEECCTTEESSSSC
T ss_pred             CCCCcEEE----CCCCCeEEECCCCCCCCCcC
Confidence            66666664    55678999999999998874

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=6e-06  Score=35.10  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=27.0

Q ss_pred             CCCcccccccccCCcceeecCCCC----CCCCCCCcc
Q psy9821           5 ISDSCAVAVAARHNISVYEEDARW----SYSLCPDVD   37 (78)
Q Consensus         5 ~~~~C~~~~~~~~~~~~c~c~~g~----~~~~C~~~~   37 (78)
                      +|..|++.|.+..+++.|.|+.||    ++..|.+.+
T Consensus         6 ~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~   42 (51)
T d2p3ua1           6 DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG   42 (51)
T ss_dssp             GGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             CCCCcccEeecCCCCeEeEcCCCCEECCCCCccccCC
Confidence            456899999999999999999999    366776543

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3e-06  Score=34.31  Aligned_cols=30  Identities=13%  Similarity=0.122  Sum_probs=22.8

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCCCc
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCPDV   36 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~~   36 (78)
                      |.++.+|    ....++|.|.|++||.|..|+.+
T Consensus         9 C~ngg~C----~~~~~~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           9 CSKQGEC----LETIGNYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             GGGSEEE----EECSSSEEEEECTTEESTTSCEE
T ss_pred             CCCCcEE----ECCCCCeEEeCCCCccCCCCCCC
Confidence            5555555    45568899999999999999643

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=6.9e-06  Score=33.20  Aligned_cols=25  Identities=4%  Similarity=-0.110  Sum_probs=22.5

Q ss_pred             CCCcccccccccCCcceeecCCCCC
Q psy9821           5 ISDSCAVAVAARHNISVYEEDARWS   29 (78)
Q Consensus         5 ~~~~C~~~~~~~~~~~~c~c~~g~~   29 (78)
                      ++..|.+.|.+..++|.|.|++||.
T Consensus         8 ~nggC~h~C~n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1           8 NNGGCSHVCNDLKIGYECLCPDGFQ   32 (40)
T ss_dssp             GGGGCSSEEEECSSSEEEECCTTCC
T ss_pred             CCCCCcCEEEcCCCCEEEECCCCCE
Confidence            4568999999999999999999994

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.5e-06  Score=34.86  Aligned_cols=33  Identities=6%  Similarity=0.029  Sum_probs=27.0

Q ss_pred             CCCcccccccccCCcceeecCCCC----CCCCCCCcc
Q psy9821           5 ISDSCAVAVAARHNISVYEEDARW----SYSLCPDVD   37 (78)
Q Consensus         5 ~~~~C~~~~~~~~~~~~c~c~~g~----~~~~C~~~~   37 (78)
                      +|..|++.|.+..+++.|.|+.||    ++..|...+
T Consensus         5 ~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~   41 (50)
T d1autl2           5 DNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV   41 (50)
T ss_dssp             GGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCCcccEeecCCCCeEEECCCCCEECCCCCccccCC
Confidence            456899999999999999999999    466775443

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4e-06  Score=33.76  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++.+|    ....++|.|.|++||.|..|+
T Consensus         9 C~ngg~C----~~~~~~~~C~C~~g~~G~~Ce   36 (39)
T d1g1ta2           9 CSGHGEC----VETINNYTCKCDPGFSGLKCE   36 (39)
T ss_dssp             GGGSEEE----EEETTEEEEEECTTEESTTSC
T ss_pred             CCCCcEE----ECCCCCEEEeCCCCCcCcCcC
Confidence            4455555    456788999999999999985

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=4.4e-06  Score=34.64  Aligned_cols=21  Identities=5%  Similarity=-0.075  Sum_probs=19.7

Q ss_pred             cccccccccCCcceeecCCCC
Q psy9821           8 SCAVAVAARHNISVYEEDARW   28 (78)
Q Consensus         8 ~C~~~~~~~~~~~~c~c~~g~   28 (78)
                      .|.+.|.++.++|.|.|++||
T Consensus        13 ~C~~~C~Nt~gsy~C~C~~Gy   33 (45)
T d1nt0a3          13 PCDHYCHNYLGGYYCSCRVGY   33 (45)
T ss_dssp             CCSSEEEEETTEEEEECCTTE
T ss_pred             CCCCEeecCCCCEEEeCCCCC
Confidence            488999999999999999999

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=8.9e-06  Score=33.37  Aligned_cols=26  Identities=8%  Similarity=-0.115  Sum_probs=20.6

Q ss_pred             cccccccccCCcceeecCCCCC--CCCC
Q psy9821           8 SCAVAVAARHNISVYEEDARWS--YSLC   33 (78)
Q Consensus         8 ~C~~~~~~~~~~~~c~c~~g~~--~~~C   33 (78)
                      .|.+.|.+..++|.|.|++||.  +..|
T Consensus        14 ~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C   41 (43)
T d1emoa1          14 CKHGQCINTDGSYRCECPFGYILAGNEC   41 (43)
T ss_dssp             CSSSCCCCCSSCCCCCCCTTEEESSSCE
T ss_pred             CCCCEeECCCCCeEeECCCCcccCCCcc
Confidence            4556788999999999999994  4444

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.4e-05  Score=33.91  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=28.1

Q ss_pred             CCCC-CCCcccccccccC-CcceeecCCCC----CCCCCCCcc
Q psy9821           1 MLCF-ISDSCAVAVAARH-NISVYEEDARW----SYSLCPDVD   37 (78)
Q Consensus         1 ~~c~-~~~~C~~~~~~~~-~~~~c~c~~g~----~~~~C~~~~   37 (78)
                      |+|. +|..|++.|.+.. +.+.|.|+.||    ++..|...+
T Consensus         1 ~~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~   43 (57)
T d1rfnb_           1 MTCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAV   43 (57)
T ss_dssp             CCTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEECS
T ss_pred             CccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccCC
Confidence            5676 4568999998875 57899999999    366776543

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.1e-05  Score=33.58  Aligned_cols=22  Identities=5%  Similarity=-0.035  Sum_probs=19.6

Q ss_pred             cccccccccCCcceeecCCCCC
Q psy9821           8 SCAVAVAARHNISVYEEDARWS   29 (78)
Q Consensus         8 ~C~~~~~~~~~~~~c~c~~g~~   29 (78)
                      .|.+.|.++.++|.|.|++||.
T Consensus        21 ~c~~~C~Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_          21 QCQHLCHNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             TTSSEEEEETTEEEEECSTTCE
T ss_pred             CccCEeEcCCCCeEeECCCCCe
Confidence            4678899999999999999994

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.4e-05  Score=33.04  Aligned_cols=21  Identities=10%  Similarity=0.025  Sum_probs=19.7

Q ss_pred             cccccccccCCcceeecCCCC
Q psy9821           8 SCAVAVAARHNISVYEEDARW   28 (78)
Q Consensus         8 ~C~~~~~~~~~~~~c~c~~g~   28 (78)
                      .|.+.|.++.++|.|.|+.||
T Consensus        13 ~C~~~C~Nt~Gsy~C~C~~Gy   33 (45)
T d1szba2          13 TCDHHCHNHLGGFYCSCRAGY   33 (45)
T ss_dssp             SSSSEEEEETTEEEEECCTTE
T ss_pred             CCCCCCccCCCCeEEECCCCC
Confidence            488899999999999999999

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.2e-05  Score=32.12  Aligned_cols=24  Identities=0%  Similarity=-0.017  Sum_probs=20.0

Q ss_pred             CCcccccccccCCcceeecCCCCC
Q psy9821           6 SDSCAVAVAARHNISVYEEDARWS   29 (78)
Q Consensus         6 ~~~C~~~~~~~~~~~~c~c~~g~~   29 (78)
                      +..|.+.|.++.++|.|.|++||.
T Consensus        10 ~~~c~~~C~Nt~G~y~C~C~~Gy~   33 (43)
T d1uzka1          10 TTCISGNCVNTPGSYICDCPPDFE   33 (43)
T ss_dssp             TSSBTSEEEEETTEEEEECCTTCE
T ss_pred             CcCcCCEeECCCCCEEEecCCCCE
Confidence            334667899999999999999993

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=6.4e-05  Score=32.03  Aligned_cols=31  Identities=13%  Similarity=0.208  Sum_probs=23.3

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCPD   35 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~   35 (78)
                      |.++.+|...  .....|.|.|+.||+|..|+-
T Consensus        14 C~NgG~C~~~--~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_          14 CLNGGVCMHI--ESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             SCSSCEEEEE--SSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCcEeecc--CCCCCeEeECCCCCcCCCCcc
Confidence            6777777522  344679999999999999963

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.5e-05  Score=31.03  Aligned_cols=28  Identities=39%  Similarity=0.928  Sum_probs=24.9

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..+|.+++.|+...+.|.|.|+.+|.+.
T Consensus         6 ~~pC~ngg~C~~~~~~y~C~C~~g~~G~   33 (40)
T d1g1sa2           6 DMSCSKQGECLETIGNYTCSCYPGFYGP   33 (40)
T ss_dssp             TTGGGGSEEEEECSSSEEEEECTTEEST
T ss_pred             CCcCCCCcEEECCCCCeEEeCCCCccCC
Confidence            5678888999999999999999999875

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2e-05  Score=31.59  Aligned_cols=28  Identities=32%  Similarity=0.867  Sum_probs=24.9

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      ..+|.+++.|++..+.|.|.|+.||.++
T Consensus         6 ~~pC~ngg~C~~~~~~~~C~C~~g~~G~   33 (39)
T d1g1ta2           6 NTSCSGHGECVETINNYTCKCDPGFSGL   33 (39)
T ss_dssp             TTGGGGSEEEEEETTEEEEEECTTEEST
T ss_pred             CCcCCCCcEEECCCCCEEEeCCCCCcCc
Confidence            5678888999999999999999999875

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.6e-05  Score=34.45  Aligned_cols=33  Identities=9%  Similarity=0.288  Sum_probs=25.8

Q ss_pred             CCCCCcccccc-cccCCcceeecCCCCCCCCCCC
Q psy9821           3 CFISDSCAVAV-AARHNISVYEEDARWSYSLCPD   35 (78)
Q Consensus         3 c~~~~~C~~~~-~~~~~~~~c~c~~g~~~~~C~~   35 (78)
                      |.++++|.... .+....|.|+|++||+|..|+.
T Consensus        14 C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~   47 (63)
T d1haea_          14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE   47 (63)
T ss_dssp             SCTTCEEEEEESSSSSCCEEEECCTTEESTTSCE
T ss_pred             CCCCCEEeecccccCCCCEEeECCCCCCCCCcCC
Confidence            77888886433 3456789999999999999953

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=6.4e-05  Score=30.52  Aligned_cols=22  Identities=9%  Similarity=-0.035  Sum_probs=18.6

Q ss_pred             cccc-cccccCCcceeecCCCCC
Q psy9821           8 SCAV-AVAARHNISVYEEDARWS   29 (78)
Q Consensus         8 ~C~~-~~~~~~~~~~c~c~~g~~   29 (78)
                      .|.+ .|.++.++|.|.|++||.
T Consensus        11 ~C~~~~C~Nt~Gsy~C~C~~Gy~   33 (42)
T d1lmja2          11 LCRGGVCHNTEGSYRCECPPGHQ   33 (42)
T ss_dssp             TTTTSEEEEETTEEEEESCTTSC
T ss_pred             CCCCCEeECCCCCeEEeCCCCCe
Confidence            4544 788999999999999995

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=3.9e-05  Score=30.87  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=19.7

Q ss_pred             CCCCCcccccccccCCcceeecCCCCC--CCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWS--YSLC   33 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~--~~~C   33 (78)
                      |..++.    |.+..++|.|+|++||.  |..|
T Consensus         9 C~~~A~----C~Nt~Gsy~C~C~~Gy~GdG~~C   37 (40)
T d1gl4a2           9 CSVHAE----CRDYATGFCCRCVANYTGNGRQC   37 (40)
T ss_dssp             SCTTEE----EEECSSCEEEEECTTEEECSSSE
T ss_pred             CCCCCE----eecCCCCeEeECCCCCcCCCCEe
Confidence            445544    45778999999999995  5445

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00036  Score=29.27  Aligned_cols=33  Identities=21%  Similarity=0.523  Sum_probs=24.6

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCceeC-CCCceee
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      .+-|.  ..|++++++|+|.|+.||... ....|.+
T Consensus         6 NGgC~--~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~   39 (50)
T d1autl2           6 NGGCT--HYCLEEVGWRRCSCAPGYKLGDDLLQCHP   39 (50)
T ss_dssp             GGGCS--SEEEECSSSEEEECCTTEEECTTSSCEEE
T ss_pred             CCCcc--cEeecCCCCeEEECCCCCEECCCCCcccc
Confidence            44564  889999999999999999853 3334654

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=5.4e-05  Score=31.64  Aligned_cols=30  Identities=10%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++++|...  .....+.|.|+.||+|..|+
T Consensus        12 C~ngG~C~~~--~~~~~~~C~C~~gy~G~~Ce   41 (48)
T d1nqlb_          12 CLHDGVCMYI--EALDKYACNCVVGYIGERCQ   41 (48)
T ss_dssp             ECTTCEEEEE--TTTTEEEEEECTTEESTTSC
T ss_pred             CCCCcEEeee--CCCCCeEEeCCCCcccCCCC
Confidence            5666666522  22357899999999999995

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00012  Score=29.77  Aligned_cols=22  Identities=5%  Similarity=-0.052  Sum_probs=18.6

Q ss_pred             ccc-ccccccCCcceeecCCCCC
Q psy9821           8 SCA-VAVAARHNISVYEEDARWS   29 (78)
Q Consensus         8 ~C~-~~~~~~~~~~~c~c~~g~~   29 (78)
                      .|. +.|.++.++|.|.|++||.
T Consensus        12 ~c~~~~C~Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2          12 LCQGGKCINTFGSFQCRCPTGYY   34 (43)
T ss_dssp             GGBTSEEEECSSCEEEECCTTCC
T ss_pred             CcCCCEEECCCCCeEeECCCCCe
Confidence            443 5788999999999999995

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00015  Score=30.26  Aligned_cols=32  Identities=31%  Similarity=0.867  Sum_probs=26.0

Q ss_pred             cccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821          36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        36 ~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~   70 (78)
                      .++|.  ..+|.. ++|++..++|.|.|+.||.+.
T Consensus         8 ~~~C~--~~PC~n-G~C~~~~~~y~C~C~~G~~G~   39 (48)
T d1autl1           8 EHPCA--SLCCGH-GTCIDGIGSFSCDCRSGWEGR   39 (48)
T ss_dssp             CCSSS--STTTTS-EEECCCSSCCCEEECTTEEST
T ss_pred             CCccc--CCCCCC-CEEECCCCCCeEeCCCCCcCC
Confidence            35566  567875 689999999999999999864

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00024  Score=29.94  Aligned_cols=33  Identities=27%  Similarity=0.681  Sum_probs=24.7

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCceeC-CCCceee
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHGD-GKTSCTK   77 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~-~~~~c~~   77 (78)
                      ++-|.  ..|.+.+++|+|.|+.||... ....|.+
T Consensus         7 NGgC~--h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~   40 (51)
T d2p3ua1           7 NGDCD--QFCHEEQNSVVCSCARGYTLADNGKACIP   40 (51)
T ss_dssp             GGGCS--SEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCcc--cEeecCCCCeEeEcCCCCEECCCCCcccc
Confidence            44564  789999999999999999853 3334654

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.09  E-value=8.3e-05  Score=30.18  Aligned_cols=30  Identities=13%  Similarity=0.142  Sum_probs=22.3

Q ss_pred             CCCCCCcccccccccCCcceeecCC-CCCCCCCC
Q psy9821           2 LCFISDSCAVAVAARHNISVYEEDA-RWSYSLCP   34 (78)
Q Consensus         2 ~c~~~~~C~~~~~~~~~~~~c~c~~-g~~~~~C~   34 (78)
                      -|.++.+|..   ....+|.|.|+. ||.|..|+
T Consensus         9 PC~ngG~C~~---~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           9 PCQHQGICVR---FGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             CCCTTCEEEE---ETTTEEEEECTTSSEETTTTC
T ss_pred             CCCCCCEeee---CCCCCEEEECCCCCcCCcCcC
Confidence            3677777752   235689999985 99999985

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.09  E-value=0.00027  Score=28.58  Aligned_cols=33  Identities=30%  Similarity=0.868  Sum_probs=25.8

Q ss_pred             cccCCCCCCCCCCCCEEEeC-CCCeEeeCCC-CceeC
Q psy9821          36 VDECGLGLHDCHKDAKCTNT-HGSYSCQCKR-GFHGD   70 (78)
Q Consensus        36 ~~~c~~~~~~c~~~~~C~~~-~~~~~c~C~~-g~~~~   70 (78)
                      ++.|.  ..+|.+++.|+.. .+.|.|.|+. ||.+.
T Consensus         2 id~C~--~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~   36 (42)
T d1q4ga2           2 VNPCC--YYPCQHQGICVRFGLDRYQCDCTRTGYSGP   36 (42)
T ss_dssp             CCGGG--GCCCCTTCEEEEETTTEEEEECTTSSEETT
T ss_pred             CccCc--CCCCCCCCEeeeCCCCCEEEECCCCCcCCc
Confidence            45566  5789999999875 5789999986 88764

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00076  Score=27.03  Aligned_cols=28  Identities=29%  Similarity=0.854  Sum_probs=23.0

Q ss_pred             CCCCCCCCEEEeC--CCCeEeeCCCCceeC
Q psy9821          43 LHDCHKDAKCTNT--HGSYSCQCKRGFHGD   70 (78)
Q Consensus        43 ~~~c~~~~~C~~~--~~~~~c~C~~g~~~~   70 (78)
                      +.+|.++++|+..  ...|.|.|+.+|.++
T Consensus         3 ~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~   32 (41)
T d1tpga1           3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGK   32 (41)
T ss_dssp             SCCSCTTCEEEEESSSSCEEEECCTTCBSS
T ss_pred             CCCCCCCCEEecCCCCCCeEECCCCCCCCC
Confidence            4678888999875  467999999999864

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00014  Score=30.35  Aligned_cols=22  Identities=9%  Similarity=0.199  Sum_probs=18.5

Q ss_pred             ccccCCcceeecCCCCCCCCCC
Q psy9821          13 VAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus        13 ~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |....++|.|.|++||+|..|+
T Consensus        21 C~~~~~~y~C~C~~G~~G~~Ce   42 (48)
T d1autl1          21 CIDGIGSFSCDCRSGWEGRFCQ   42 (48)
T ss_dssp             ECCCSSCCCEEECTTEESTTSC
T ss_pred             EECCCCCCeEeCCCCCcCCCcc
Confidence            3456688999999999999994

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00023  Score=29.87  Aligned_cols=25  Identities=4%  Similarity=-0.081  Sum_probs=19.8

Q ss_pred             CCCccccccc------ccCCcceeecCCCCC
Q psy9821           5 ISDSCAVAVA------ARHNISVYEEDARWS   29 (78)
Q Consensus         5 ~~~~C~~~~~------~~~~~~~c~c~~g~~   29 (78)
                      +|..|++.|.      +..++|.|.|+.||.
T Consensus        10 ~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2          10 SNGGCQYLCLPAPQINPHSPKFTCACPDGML   40 (50)
T ss_dssp             GGGGCSSEEEECCCCSTTCCSEEEECCTTCE
T ss_pred             CCCCCcCccCCCcCcccCCCCEEEeCCCCCE
Confidence            4568999985      456789999999993

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00015  Score=29.66  Aligned_cols=24  Identities=13%  Similarity=0.094  Sum_probs=19.5

Q ss_pred             Ccccc-cccccCCcceeecCCCCCC
Q psy9821           7 DSCAV-AVAARHNISVYEEDARWSY   30 (78)
Q Consensus         7 ~~C~~-~~~~~~~~~~c~c~~g~~~   30 (78)
                      ..|.+ .|.++.++|.|.|++||.+
T Consensus        11 ~~C~~~~C~Nt~Gsy~C~C~~Gy~~   35 (44)
T d1lmja1          11 DLCGRGQCVNTPGDFECKCDEGYES   35 (44)
T ss_dssp             STTTTSCEEEETTEEEECCCSSEEE
T ss_pred             CCCCCCEeEcCCCCeEEeCCCCCcc
Confidence            34554 6889999999999999954

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00015  Score=29.19  Aligned_cols=30  Identities=10%  Similarity=0.171  Sum_probs=22.0

Q ss_pred             CCCCCCcccccccccCCcceeecC-CCCCCCCCC
Q psy9821           2 LCFISDSCAVAVAARHNISVYEED-ARWSYSLCP   34 (78)
Q Consensus         2 ~c~~~~~C~~~~~~~~~~~~c~c~-~g~~~~~C~   34 (78)
                      -|.++.+|.+.   ...+|.|.|+ +||.|..|+
T Consensus         8 PC~ngG~C~~~---~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           8 PCQNRGECMST---GFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             CCCTTCEEEEE---ETTEEEEECTTSSEETTTTC
T ss_pred             CCCCCCEEEEC---CCCCEEEeCcCCCcCCcCcC
Confidence            36777777532   2467999997 699999985

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.88  E-value=0.00039  Score=29.27  Aligned_cols=33  Identities=24%  Similarity=0.643  Sum_probs=24.1

Q ss_pred             CCCCCCCCEEEeCCCCeEeeCCCCcee-CCCCceee
Q psy9821          43 LHDCHKDAKCTNTHGSYSCQCKRGFHG-DGKTSCTK   77 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~-~~~~~c~~   77 (78)
                      .+.|.  ..|++.+++|.|.|+.||.. .....|.+
T Consensus         5 NGgC~--h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~   38 (51)
T d1kigl_           5 NGGCD--QFCREERSEVRCSCAHGYVLGDDSKSCVS   38 (51)
T ss_dssp             TTSSS--SCCCEETTEECCCCCTTEEECTTSSCEEE
T ss_pred             CCCcc--cEeEcCCCcEEeEcCCCCEECCCCCcccc
Confidence            44564  67889999999999999974 33344754

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.0012  Score=26.47  Aligned_cols=32  Identities=34%  Similarity=1.002  Sum_probs=24.4

Q ss_pred             ccCCCCCCCCCCCCEEEeC-CCCeEeeCCC-CceeC
Q psy9821          37 DECGLGLHDCHKDAKCTNT-HGSYSCQCKR-GFHGD   70 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~~-~~~~~c~C~~-g~~~~   70 (78)
                      +.|.  ..+|.+++.|+.. .+.|.|.|+. +|.+.
T Consensus         2 d~C~--~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~   35 (41)
T d1cvua2           2 NPCC--SNPCQNRGECMSTGFDQYKCDCTRTGFYGE   35 (41)
T ss_dssp             CTTT--TCCCCTTCEEEEEETTEEEEECTTSSEETT
T ss_pred             CcCc--CCCCCCCCEEEECCCCCEEEeCcCCCcCCc
Confidence            3454  5689989999875 5789999974 88764

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0002  Score=30.48  Aligned_cols=31  Identities=6%  Similarity=0.103  Sum_probs=23.9

Q ss_pred             CCCcccccccccCC-cceeecCCCC----CCCCCCC
Q psy9821           5 ISDSCAVAVAARHN-ISVYEEDARW----SYSLCPD   35 (78)
Q Consensus         5 ~~~~C~~~~~~~~~-~~~c~c~~g~----~~~~C~~   35 (78)
                      +|..|++.|.+..+ .+.|.|+.||    ++..|..
T Consensus         5 ~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   40 (53)
T d2bz6l1           5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccC
Confidence            35689999988876 5789999999    3566643

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0032  Score=26.21  Aligned_cols=38  Identities=21%  Similarity=0.512  Sum_probs=24.5

Q ss_pred             ccCCCCCCCCCCCCEEEe------CCCCeEeeCCCCceeC-CCCcee
Q psy9821          37 DECGLGLHDCHKDAKCTN------THGSYSCQCKRGFHGD-GKTSCT   76 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~------~~~~~~c~C~~g~~~~-~~~~c~   76 (78)
                      ++|....+-|.  ..|+.      ..++|.|.|+.||... ....|+
T Consensus         5 neC~~~NGGC~--h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2           5 ERTTLSNGGCQ--YLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL   49 (50)
T ss_dssp             SSSSSGGGGCS--SEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             cccCCCCCCCc--CccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence            34544445564  77864      4578999999999853 333464

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0044  Score=23.84  Aligned_cols=31  Identities=39%  Similarity=1.122  Sum_probs=23.7

Q ss_pred             ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821          37 DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG   69 (78)
Q Consensus        37 ~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~   69 (78)
                      ++|... .+|. ..+|.|..++|.|.|..||..
T Consensus         2 dECsig-npCG-nGTCtNviGgFec~C~~GFep   32 (39)
T d1emoa2           2 DECSVG-NPCG-NGTCKNVIGGFECTCEEGFEP   32 (39)
T ss_dssp             CGGGTT-CSSS-SSCEEECSSSEEECCSSSSCC
T ss_pred             CccccC-CccC-CceeeecccceEEeecCCcCC
Confidence            345443 5676 378999999999999999864

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00065  Score=28.44  Aligned_cols=30  Identities=10%  Similarity=0.133  Sum_probs=20.0

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCPD   35 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~   35 (78)
                      |.++..|.   ......+.|+|+.||+|..|+-
T Consensus        16 C~nGgcc~---~~~~~~~~C~C~~gy~G~rCe~   45 (50)
T d1ioxa_          16 CIKGRCRF---VVAEQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             CTTCCEEE---ETTTTEEEECCCTTEETTTTCE
T ss_pred             ccCCeEEE---eCCCCCcEeECCCCCeeCCCcc
Confidence            45554442   2334567899999999988864

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0006  Score=28.45  Aligned_cols=20  Identities=5%  Similarity=0.096  Sum_probs=15.8

Q ss_pred             CCcceeecCCCCCCCCCCCc
Q psy9821          17 HNISVYEEDARWSYSLCPDV   36 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~~   36 (78)
                      ...+.|.|++||.|..|+..
T Consensus        26 ~~~~~C~C~~gy~G~RCe~~   45 (49)
T d1moxc_          26 EDKPACVCHSGYVGARCEHA   45 (49)
T ss_dssp             TTEEEEEECTTEESTTSCEE
T ss_pred             CCCcEeECCCCCEecCCccc
Confidence            45678999999999888644

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0036  Score=27.23  Aligned_cols=28  Identities=29%  Similarity=0.778  Sum_probs=22.3

Q ss_pred             CCCCCCCCEEE-----eCCCCeEeeCCCCceeC
Q psy9821          43 LHDCHKDAKCT-----NTHGSYSCQCKRGFHGD   70 (78)
Q Consensus        43 ~~~c~~~~~C~-----~~~~~~~c~C~~g~~~~   70 (78)
                      ..+|.+++.|.     +..+.|.|.|+.+|.+.
T Consensus        11 ~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~   43 (63)
T d1haea_          11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA   43 (63)
T ss_dssp             HTTSCTTCEEEEEESSSSSCCEEEECCTTEEST
T ss_pred             CCcCCCCCEEeecccccCCCCEEeECCCCCCCC
Confidence            46788888995     34578999999999864

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.015  Score=24.30  Aligned_cols=28  Identities=32%  Similarity=0.770  Sum_probs=22.2

Q ss_pred             CCCCCCCCEEEeC--CCCeEeeCCCCceeC
Q psy9821          43 LHDCHKDAKCTNT--HGSYSCQCKRGFHGD   70 (78)
Q Consensus        43 ~~~c~~~~~C~~~--~~~~~c~C~~g~~~~   70 (78)
                      ..+|.++++|...  ...|.|.|+.+|.++
T Consensus        11 ~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~   40 (53)
T d3egfa_          11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGD   40 (53)
T ss_dssp             SCCSCSSCEEEEESSSSCEEEECCTTCCSS
T ss_pred             CCCCCCCcEeeccCCCCCeEeECCCCCcCC
Confidence            4578888999753  468999999999864

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.015  Score=24.75  Aligned_cols=33  Identities=24%  Similarity=0.682  Sum_probs=23.1

Q ss_pred             CCCCCCCCEEEeCC-CCeEeeCCCCcee-CCCCceee
Q psy9821          43 LHDCHKDAKCTNTH-GSYSCQCKRGFHG-DGKTSCTK   77 (78)
Q Consensus        43 ~~~c~~~~~C~~~~-~~~~c~C~~g~~~-~~~~~c~~   77 (78)
                      ++-|.  ..|++.+ +++.|.|+.||.. +....|.+
T Consensus         7 NGgC~--h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   41 (57)
T d1rfnb_           7 NGRCE--QFCKNSADNKVVCSCTEGYRLAENQKSCEP   41 (57)
T ss_dssp             GGGCS--SEEEECTTSCEEEECCTTEEECTTSSSEEE
T ss_pred             CCCcc--cEeeeCCCCCeEeECCCCCEECCCCCcccc
Confidence            34464  7899886 4789999999984 33334654

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.015  Score=24.38  Aligned_cols=33  Identities=30%  Similarity=0.746  Sum_probs=22.5

Q ss_pred             CCCCCCCCEEEeCCC-CeEeeCCCCcee-CCCCceee
Q psy9821          43 LHDCHKDAKCTNTHG-SYSCQCKRGFHG-DGKTSCTK   77 (78)
Q Consensus        43 ~~~c~~~~~C~~~~~-~~~c~C~~g~~~-~~~~~c~~   77 (78)
                      ++-|.  ..|.+.++ .+.|.|+.||.. +....|..
T Consensus         6 NGGC~--h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   40 (53)
T d2bz6l1           6 NGGCE--QYCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             GGGCS--SEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCc--CEeeeCCCCCEEeECCCCCEECCCCCcccC
Confidence            34464  78988876 478999999974 33334653

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0078  Score=24.55  Aligned_cols=20  Identities=5%  Similarity=0.097  Sum_probs=16.5

Q ss_pred             cCCcceeecCCCCCCCCCCC
Q psy9821          16 RHNISVYEEDARWSYSLCPD   35 (78)
Q Consensus        16 ~~~~~~c~c~~g~~~~~C~~   35 (78)
                      ....+.|.|++||.|..|+-
T Consensus        24 ~~~~~~C~C~~gY~G~RCe~   43 (46)
T d1k36a_          24 DMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             TTTEEEEEECTTCSSTTSCC
T ss_pred             CCCccEeECCCCceecCcee
Confidence            34578999999999998863

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.011  Score=22.84  Aligned_cols=31  Identities=16%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             CCCCCcccccccccCCcceeecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVYEEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~   34 (78)
                      |.++.+|.. -..+...-.|.||.+|.|.+|+
T Consensus         4 ClNGG~Cvs-yk~FS~I~rC~CPk~f~G~HCE   34 (40)
T d2i9aa1           4 CLNGGTCVS-NKYFSNIHWCNCPKKFGGQHCE   34 (40)
T ss_dssp             CCTTCEEEE-CSSSTTCEEEECCTTEESTTSC
T ss_pred             cccCCEEEE-EehhcCCEEecCCcccCceeEE
Confidence            566666641 1235667789999999998884

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.01  Score=23.63  Aligned_cols=19  Identities=5%  Similarity=-0.017  Sum_probs=15.2

Q ss_pred             CCcceeecCCCCCCCCCCC
Q psy9821          17 HNISVYEEDARWSYSLCPD   35 (78)
Q Consensus        17 ~~~~~c~c~~g~~~~~C~~   35 (78)
                      ...+.|+|..||+|..|+.
T Consensus        21 l~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_          21 LRAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             GTBCCEEECTTEESTTCCE
T ss_pred             CCCceeECCCCCeecCccc
Confidence            4567899999999988853

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.094  Score=20.65  Aligned_cols=15  Identities=13%  Similarity=0.166  Sum_probs=12.7

Q ss_pred             ceeecCCCCCCCCCC
Q psy9821          20 SVYEEDARWSYSLCP   34 (78)
Q Consensus        20 ~~c~c~~g~~~~~C~   34 (78)
                      -.|.|.+||+|..|+
T Consensus        26 G~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          26 GKCRCHPGFEGSACQ   40 (41)
T ss_dssp             TEEEECTTCCTTTTC
T ss_pred             CEEEcCCCCcccCcc
Confidence            468999999998885

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.021  Score=21.01  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=16.1

Q ss_pred             CCCCCCcccccccccCCcceeecCCCCCCCCC
Q psy9821           2 LCFISDSCAVAVAARHNISVYEEDARWSYSLC   33 (78)
Q Consensus         2 ~c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C   33 (78)
                      +|.++..|.       ++. |+|.+||+|.+|
T Consensus         4 ~C~ghG~C~-------CG~-C~C~~gw~G~~C   27 (31)
T d1jv2b4           4 MCSGHGQCS-------CGD-CLCDSDWTGYYC   27 (31)
T ss_dssp             CSCCCTTCC-------STT-TCCCTTEESSSS
T ss_pred             eccCCCccc-------CCc-eEccCCcccccc
Confidence            455555553       222 688999999887

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.11  Score=20.32  Aligned_cols=12  Identities=50%  Similarity=1.140  Sum_probs=6.4

Q ss_pred             CCeEeeCCCCce
Q psy9821          57 GSYSCQCKRGFH   68 (78)
Q Consensus        57 ~~~~c~C~~g~~   68 (78)
                      +.|+|.|..||.
T Consensus        22 ~~Y~CiCaeGFa   33 (43)
T d1dx5i1          22 TSYLCVCAEGFA   33 (43)
T ss_dssp             SCEEEECCTTEE
T ss_pred             CcceEEeccccc
Confidence            345555555554

>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=0.34  Score=17.94  Aligned_cols=16  Identities=38%  Similarity=0.895  Sum_probs=10.1

Q ss_pred             EeeCCCCceeCCCCce
Q psy9821          60 SCQCKRGFHGDGKTSC   75 (78)
Q Consensus        60 ~c~C~~g~~~~~~~~c   75 (78)
                      .|.|+.||..++...|
T Consensus        19 ~C~CPeGyIldeg~~c   34 (35)
T d1dx5i2          19 SCECPEGYILDDGFIC   34 (35)
T ss_dssp             CEECCTTEEEETTTEE
T ss_pred             cccCCCceEecccccc
Confidence            4778888876544334

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.94  E-value=0.34  Score=20.01  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=18.7

Q ss_pred             CCCCCcccccccccCCccee-ecCCCCCCCCCC
Q psy9821           3 CFISDSCAVAVAARHNISVY-EEDARWSYSLCP   34 (78)
Q Consensus         3 c~~~~~C~~~~~~~~~~~~c-~c~~g~~~~~C~   34 (78)
                      |.++++|...  ...+...| .|+.+|+|..|+
T Consensus         3 C~~~~~c~~~--~~~~~~vC~~C~~~~~G~~Ce   33 (55)
T d1kloa1           3 CPGGSSCAIV--PKTKEVVCTHCPTGTAGKRCE   33 (55)
T ss_dssp             SCTTCCEEEC--SSSCCEEECSCCTTEESTTSC
T ss_pred             CcCCCcccee--CCCCCEEcCCCCCCCccCccc
Confidence            5555555322  22345566 499999998885