Psyllid ID: psy9827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------
Protein Sequence
MLRPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKSNLDIRELDIRESWI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEccccccEEEEEEccccHHHHcccccccEEEEEccEEcccccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEcccEEEEEEEEcccccccccccccccccEEEEEcccccccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEccHHHHHHcccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHccccccEEEEEEEEcccccccccccccccccEEEEEcccccEEEEEEcccccEEEEEEEccccccHHHccccccEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEcccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEEccccEEEEEEEcccccccccccccccccEEEEEcccccHcccHHHHHHHHHHccccEEEEEEEcccccHHHcHHHHccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEccHcHHHHHHHHHHcccccccccccccccHHHHccccccccccccccccHHHccccccccccccHHHHHHHccccccEEEEccHHHHHHHHHHHHccccccccccccccccccccEEcccccccEEEEcEHHHHHHcccEEEEEccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHccccc
Coil and Loop (DISEMBL)
mlrpdprfitfqkegsvgirltggnkVGIFVTavqpgspdlfsiffvepdprfitfqkegsvgirltggnkVGIFVTavqpgspaslqglqpgdkilkvndmdmkgITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAsqrgdsfhikVNDRImsanglslenveYGTAVQVLRdsgstvtlkvrrrivlpaspepqtLRVQLSksrkkddfgiILGNKIFVKEVTHrldnnaspgthqlaEGDVLLKinnhptdgmsvKEARKLIDSSKEKLSLTIrrevprptayqesttlpgkennymdplstnyssqnlyvqpptrggpnnlledksnlvpragrsrnplldvslsqldrpvspinnsmdslgrnnqevqkgiipnKARAEELATAQFNATKKelsasesrgsffkrrrnshrrskslskdhwddvvfgdsiskfpayervslrhpgfirpvvlfgpvadLARDKllkdfpdkfsaprkfNFILWATIKDTamyqsskepgmyqgkdsmyqgkdsmyqgkesmyqgkdsmyqgkdsmyqgkdsmyqgkdIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEkqqsspvwisetksnldireldireswi
Flexible Loop (DISEMBL)
mlrpdprfitfqkegsvgirltGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQpgspaslqglqpgdKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAsqrgdsfhikVNDRIMSANGLSLENVEYGTAVQVlrdsgstvtlkvrrrivlpaspepqtlrvqlsksrkkddfgiiLGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDsskeklsltirrevprptayqesttlpgkennyMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLvpragrsrnplldvslsqldrpvspinnsmdslgrnNQEVQKGIIPNKARAEELATAQfnatkkelsasesrgsffkrrrnshrrskslskdhwddvvfGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKdfpdkfsaprkfNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWShvftgtitlsgvdvWYRKTRELiekqqsspvwisetksnldireldireswi
Low Complexity Region (SEG)
MLRPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGsffkrrrnshrrskslskDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKSNLDIRELDIRESWI
Disordered region (IsUnstruct)
*******FITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQ*************DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVL********************DFGIILGNKIFVKEVTHRLD*************DVLLK*********************************************************************************************************************************************************************************HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMY*********************************************************KEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEK*****VWI*******************
Disordered Region (DISOPRED)
*LRPD***********************************************FITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ************************************************************************************FGIILGNKIFVKEVTHRLD***S****QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR*********************************************************************************NSMDSLGRNNQEVQKGIIPN**************************************************************ERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP******************SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG*******************EQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETK******EL*I*ES*I
Disordered Region (DISEMBL)
MLRPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNA*****************************KDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKSNLDIRELDIRESWI
Disordered Region (DISPRO)
*****PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRG**FH****DR**************************************PASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFN*******************************************SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETK**************I
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKSNLDIRELDIRESWI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	627	2.2.26 [Sep-21-2011]
Q07157	1748	Tight junction protein ZO	yes	N/A	0.350	0.125	0.333	4e-27
P39447	1745	Tight junction protein ZO	yes	N/A	0.350	0.126	0.333	4e-27
O97758	1769	Tight junction protein ZO	yes	N/A	0.350	0.124	0.333	5e-27
Q9UDY2	1190	Tight junction protein ZO	no	N/A	0.370	0.194	0.335	6e-24
Q9Z0U1	1167	Tight junction protein ZO	no	N/A	0.371	0.199	0.330	1e-23
Q95168	1174	Tight junction protein ZO	no	N/A	0.370	0.197	0.335	1e-23
O62683	898	Tight junction protein ZO	no	N/A	0.164	0.114	0.485	3e-22
O95049	933	Tight junction protein ZO	no	N/A	0.164	0.110	0.504	3e-22
Q9QXY1	905	Tight junction protein ZO	no	N/A	0.164	0.113	0.481	2e-19
Q8TDM6	1919	Disks large homolog 5 OS=	no	N/A	0.834	0.272	0.225	7e-17

>sp|Q07157|ZO1_HUMAN Tight junction protein ZO-1 OS=Homo sapiens GN=TJP1 PE=1 SV=3

 Score =  123 bits (309), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 137/273 (50%), Gaps = 53/273 (19%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R  F++ R    R SK   + 
Sbjct: 562 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFR--GLRSSKRNLRK 616

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
             +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD         
Sbjct: 617 SREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 667

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                      +YQ +K      G D    G   ++  K+ + Q K ++    D      
Sbjct: 668 -----------IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALL---DVTPNAV 713

Query: 547 DSM----------YQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTI 582
           D +          +   D K+ VK               KL+E+S KL K   H+FT TI
Sbjct: 714 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI 773

Query: 583 TLSGV-DVWYRKTRELIEKQQSSPVWISETKSN 614
            L+ + D WY   +E I++QQ+  VW+SE K++
Sbjct: 774 NLNSMNDGWYGALKEAIQQQQNQLVWVSEGKAD 806

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.
Homo sapiens (taxid: 9606)

>sp|P39447|ZO1_MOUSE Tight junction protein ZO-1 OS=Mus musculus GN=Tjp1 PE=1 SV=2

 Score =  123 bits (309), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 137/273 (50%), Gaps = 53/273 (19%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R  F++ R    R SK   + 
Sbjct: 562 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFR--GLRSSKRNLRK 616

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
             +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD         
Sbjct: 617 SREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 667

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                      +YQ +K      G D    G   ++  K+ + Q K ++    D      
Sbjct: 668 -----------IYQIAKSEPRDAGTDHRSSGIIRLHTIKQIIDQDKHALL---DVTPNAV 713

Query: 547 DSM----------YQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTI 582
           D +          +   D K+ VK               KL+E+S KL K   H+FT TI
Sbjct: 714 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI 773

Query: 583 TLSGV-DVWYRKTRELIEKQQSSPVWISETKSN 614
            L+ + D WY   +E I++QQ+  VW+SE K++
Sbjct: 774 NLNSMNDGWYGALKEAIQQQQNQLVWVSEGKAD 806

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.

Mus musculus (taxid: 10090)

>sp|O97758|ZO1_CANFA Tight junction protein ZO-1 OS=Canis familiaris GN=TJP1 PE=1 SV=1

 Score =  123 bits (308), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 137/273 (50%), Gaps = 53/273 (19%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R  F++ R    R SK   + 
Sbjct: 561 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFR--GLRSSKRNLRK 615

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
             +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD         
Sbjct: 616 SREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 666

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                      +YQ +K      G D    G   ++  K+ + Q K ++    D      
Sbjct: 667 -----------IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALL---DVTPNAV 712

Query: 547 DSM----------YQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTI 582
           D +          +   D K+ VK               KL+E+S KL K   H+FT TI
Sbjct: 713 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI 772

Query: 583 TLSGV-DVWYRKTRELIEKQQSSPVWISETKSN 614
            L+ + D WY   +E I++QQ+  VW+SE K++
Sbjct: 773 NLNSMNDGWYGALKEAIQQQQNQLVWVSEGKAD 805

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.

Canis familiaris (taxid: 9615)

>sp|Q9UDY2|ZO2_HUMAN Tight junction protein ZO-2 OS=Homo sapiens GN=TJP2 PE=1 SV=2

 Score =  112 bits (281), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 125/253 (49%), Gaps = 21/253 (8%)

Query: 369 RNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHW 428
           R   E++KG+IPNK+RAE++A+ Q NA +        R  F++ R       K+L K   
Sbjct: 649 RIGNELEKGLIPNKSRAEQMASVQ-NAQRDNAG---DRADFWRMRGQRSGVKKNLRKSRE 704

Query: 429 DDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFI 488
           D        +KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F   +     
Sbjct: 705 DLTAVVSVSTKFPAYERVLLREAGFKRPVVLFGPIADIAMEKLANELPDWFQTAK----- 759

Query: 489 LWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDS-------MYQGKDS 541
                KD    +S+    +   +  + Q K ++           +        ++   DS
Sbjct: 760 --TEPKDAGSEKSTGVVRLNTVRQIIEQDKHALLDVTPKAVDLLNYTQWFPIVIFFNPDS 817

Query: 542 MYQGKDSMYQGKD-IKKEVKIKLFEQSQKLEKVWSHVFTGTITL-SGVDVWYRKTRELIE 599
             QG  +M Q  +    +   KLF+Q+ KL+K  +H+FT TI L S  D W+   ++ I+
Sbjct: 818 R-QGVKTMRQRLNPTSNKSSRKLFDQANKLKKTCAHLFTATINLNSANDSWFGSLKDTIQ 876

Query: 600 KQQSSPVWISETK 612
            QQ   VW+SE K
Sbjct: 877 HQQGEAVWVSEGK 889

Plays a role in tight junctions and adherens junctions.

Homo sapiens (taxid: 9606)

>sp|Q9Z0U1|ZO2_MOUSE Tight junction protein ZO-2 OS=Mus musculus GN=Tjp2 PE=1 SV=2

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 21/254 (8%)

Query: 369 RNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRR--RNSHRRSKSLSKD 426
           R   E++KG+IPNK+RAE++A+ Q NA ++       R  F++ R  R+S    K+L K 
Sbjct: 629 RIGNELEKGLIPNKSRAEQMASVQ-NAQRENAG---DRADFWRMRGQRSSGGVKKNLRKS 684

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
             D        +KFPAYE+V LR  GF RPVVLFGP+AD+A ++L  + PD F   +   
Sbjct: 685 REDLAAAVSVSTKFPAYEKVLLREAGFKRPVVLFGPIADIAMERLATELPDLFQTAK--- 741

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                  KD    +SS    +   +  + Q K ++           +        ++   
Sbjct: 742 ----TEPKDAGSEKSSGVVRLNTVRQIIEQDKHALLDVTPKAVDLLNYTQWFPIVIFFNP 797

Query: 547 DSMYQGKDIKKEVKI-------KLFEQSQKLEKVWSHVFTGTITL-SGVDVWYRKTRELI 598
           DS    K I++ +         KLF+Q+ KL+K  SH+FT TI + S  D W+   ++ I
Sbjct: 798 DSRQGVKTIRQRLSPTSNKSSRKLFDQANKLKKTCSHLFTATINVNSANDGWFGSLKDSI 857

Query: 599 EKQQSSPVWISETK 612
           ++QQ+  VW+SE K
Sbjct: 858 QQQQNEAVWVSEGK 871

Plays a role in tight junctions and adherens junctions.

Mus musculus (taxid: 10090)

>sp|Q95168|ZO2_CANFA Tight junction protein ZO-2 OS=Canis familiaris GN=TJP2 PE=1 SV=1

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 125/253 (49%), Gaps = 21/253 (8%)

Query: 369 RNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHW 428
           R   E++KG+IPNK+RAE++A+ Q NA +        R  F++ R       K+L K   
Sbjct: 633 RIGNELEKGLIPNKSRAEQMASVQ-NAQRDNAG---DRADFWRMRGQRSGMKKNLRKSRE 688

Query: 429 DDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFI 488
           D        +KFPAYERV LR  GF RPVVLFGP+AD+A +KL  + PD F   +     
Sbjct: 689 DLTAAVSVSTKFPAYERVLLREAGFKRPVVLFGPIADIALEKLANELPDLFQTAK----- 743

Query: 489 LWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDS-------MYQGKDS 541
                KD    +SS    +   +  + Q K ++           +        ++   DS
Sbjct: 744 --TEPKDAGSEKSSGVVRLNTVRQIIEQDKHALLDVTPKAVDLLNYTQWFPIVIFFNPDS 801

Query: 542 MYQGKDSMYQGKD-IKKEVKIKLFEQSQKLEKVWSHVFTGTITL-SGVDVWYRKTRELIE 599
             QG  +M Q  +    +   KL++Q+ KL+K  +H+FT TI L S  D W+   ++ I+
Sbjct: 802 R-QGVKTMRQRLNPTSNKSSRKLYDQANKLKKTCAHLFTATINLNSANDSWFGSLKDTIQ 860

Query: 600 KQQSSPVWISETK 612
            QQ   VW+SE K
Sbjct: 861 HQQGEAVWVSEGK 873

Plays a role in tight junctions and adherens junctions.

Canis familiaris (taxid: 9615)

>sp|O62683|ZO3_CANFA Tight junction protein ZO-3 OS=Canis familiaris GN=TJP3 PE=1 SV=1

 Score =  107 bits (267), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 49  PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PD R + F K  ++G+RL GGN VGIFV+ VQ GSPA  QG+Q GD+IL+VND+  + +T
Sbjct: 368 PDSRVVRFHKGTTIGLRLAGGNDVGIFVSGVQEGSPADGQGIQEGDQILQVNDVPFRNLT 427

Query: 109 REEAVLFLLSL--QDQIHLIVQNRRDEYEHVVASQRGDSFHIKVN 151
           REEAV FL++L   +++ L+ Q   D +  +V S+ GDSF+I+ +
Sbjct: 428 REEAVQFLVALPPGEEVELVTQRNEDIFRKMVQSRVGDSFYIRTH 472

Canis familiaris (taxid: 9615)

>sp|O95049|ZO3_HUMAN Tight junction protein ZO-3 OS=Homo sapiens GN=TJP3 PE=1 SV=2

 Score =  107 bits (266), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 49  PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PD R + F K  S+G+RL GGN VGIFV+ VQ GSPA  QG+Q GD+IL+VND+  + +T
Sbjct: 393 PDTRVVRFLKGKSIGLRLAGGNDVGIFVSGVQAGSPADGQGIQEGDQILQVNDVPFQNLT 452

Query: 109 REEAVLFLLSLQ--DQIHLIVQNRRDEYEHVVASQRGDSFHIKVN 151
           REEAV FLL L   +++ L+ Q ++D +  +V S+ GDSF+I+ +
Sbjct: 453 REEAVQFLLGLPPGEEMELVTQRKQDIFWKMVQSRVGDSFYIRTH 497

Homo sapiens (taxid: 9606)

>sp|Q9QXY1|ZO3_MOUSE Tight junction protein ZO-3 OS=Mus musculus GN=Tjp3 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 70/106 (66%), Gaps = 3/106 (2%)

Query: 49  PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PD R ++F K  S+G+RL GGN VGIFV+ VQ GSPA  QG+Q GD+IL+VN M  + +T
Sbjct: 367 PDTRVVSFPKGASIGLRLAGGNDVGIFVSGVQAGSPADGQGIQEGDEILQVNGMPFRNLT 426

Query: 109 REEAVLFLLSL--QDQIHLIVQNRRDEYEHVVASQR-GDSFHIKVN 151
           REEAV FLL L   + + L+ Q++        +  R GDSF+I+ +
Sbjct: 427 REEAVQFLLGLPPGEDMELVTQSKTGHSLRRWSQSRVGDSFYIRTH 472

Mus musculus (taxid: 10090)

>sp|Q8TDM6|DLG5_HUMAN Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4

 Score = 89.7 bits (221), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 138/611 (22%), Positives = 262/611 (42%), Gaps = 88/611 (14%)

Query: 46   FVEPDPRFITFQKEGS--VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
            +VE +PR +  QK GS  +GI +  G K GI+V+ V  GS A   GL+ GD++L+ N ++
Sbjct: 1344 YVE-EPRHVKVQK-GSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGIN 1401

Query: 104  MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLE 163
            ++  T ++A L +    D I ++ Q   + + H ++S    S H+       +  G    
Sbjct: 1402 LRSATEQQARLIIGQQCDTITILAQY--NPHVHQLSSHSRSSSHLDPAGTHSTLQGSGTT 1459

Query: 164  NVEYGTAVQVL--RDSGSTVTLKVRRRIVLPASPEPQTLR---VQLSKSRKKDDFGIILG 218
              E+ + +  L  +D G +     +    +      +TL    V + KS+ +    +  G
Sbjct: 1460 TPEHPSVIDPLMEQDEGPSTPPAKQSSSRIAGDANKKTLEPRVVFIKKSQLELGVHLCGG 1519

Query: 219  N--KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 276
            N   +FV EV    D++ + G   L  GD++L+  +      +V+E    +   ++ + L
Sbjct: 1520 NLHGVFVAEVE---DDSPAKGPDGLVPGDLILEYGSLDVRNKTVEEVYVEMLKPRDGVRL 1576

Query: 277  TIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVP 336
             ++    RP  + ++  LPG                + Y++         L +  +++  
Sbjct: 1577 KVQY---RPEEFTKAKGLPG---------------DSFYIR--------ALYDRLADVEQ 1610

Query: 337  RAGRSRNPLLDVSLSQLDRPVSPINNSMD-SLGRNNQEVQKGIIPNKARAEE-----LAT 390
                 ++ +L V  +    P     + M   L  N Q++Q+G IP+K   ++     L+ 
Sbjct: 1611 ELSFKKDDILYVDDT---LPQGTFGSWMAWQLDENAQKIQRGQIPSKYVMDQEFSRRLSM 1667

Query: 391  AQF---NATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWD----DVVFGDSISKFP-- 441
            ++    N+  K LSA+ +R SFF+R+   H+  +S SKD  D    D    DSI  F   
Sbjct: 1668 SEVKDDNSATKTLSAA-ARRSFFRRK---HKHKRSGSKDGKDLLALDAFSSDSIPLFEDS 1723

Query: 442  ---AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFS-AP----RKFNFILWATI 493
               AY+RV       +RPV++ GP+ D+ ++ L+ + P KF   P    +     +   +
Sbjct: 1724 VSLAYQRVQKVDCTALRPVLILGPLLDVVKEMLVNEAPGKFCRCPLEVMKASQQAIERGV 1783

Query: 494  KDTAMYQSSKEPGMYQG------KDSMYQGKDSMYQGKESMYQGKDSM----------YQ 537
            KD       +  G +        K+   + +  +        +    M          Y+
Sbjct: 1784 KDCLFVDYKRRSGHFDVTTVASIKEITEKNRHCLLDIAPHAIERLHHMHIYPIVIFIHYK 1843

Query: 538  GKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTREL 597
                + + +D +Y    + +    + FE +QKLE+ +S  FTG I    +     +   +
Sbjct: 1844 SAKHIKEQRDPIYLRDKVTQRHSKEQFEAAQKLEQEYSRYFTGVIQGGALSSICTQILAM 1903

Query: 598  IEKQQSSPVWI 608
            + ++Q+  +WI
Sbjct: 1904 VNQEQNKVLWI 1914

May play a role at the plasma membrane in the maintenance of the structure of epithelial cells and in the transmission of extracellular signals to the membrane and cytoskeleton.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	627
328697077	1246	PREDICTED: tight junction protein ZO-2-l	0.363	0.182	0.543	1e-69
328697081	1302	PREDICTED: tight junction protein ZO-2-l	0.363	0.175	0.543	1e-69
328697079	1227	PREDICTED: tight junction protein ZO-2-l	0.363	0.185	0.543	1e-69
328697075	1242	PREDICTED: tight junction protein ZO-2-l	0.363	0.183	0.543	1e-69
170041813	2051	tight junction protein [Culex quinquefas	0.373	0.114	0.523	9e-65
328793836	1180	PREDICTED: tight junction protein ZO-1 [	0.368	0.195	0.543	1e-63
242014650	1337	tight junction protein tama, putative [P	0.381	0.178	0.593	3e-61
345479005	1559	PREDICTED: tight junction protein ZO-1-l	0.564	0.227	0.419	1e-60
332030048	1292	Tight junction protein ZO-1 [Acromyrmex	0.360	0.174	0.548	2e-59
307213715	1250	Tight junction protein ZO-1 [Harpegnatho	0.360	0.180	0.544	2e-59

>gi|328697077|ref|XP_003240224.1| PREDICTED: tight junction protein ZO-2-like isoform 2 [Acyrthosiphon pisum]

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/265 (54%), Positives = 180/265 (67%), Gaps = 37/265 (13%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +GRNNQEVQKGIIPNKARAEELATAQFNATKKE++ASES+G FF+RR+++HRRSKSLSK+
Sbjct: 539 IGRNNQEVQKGIIPNKARAEELATAQFNATKKEMNASESKGGFFRRRKHNHRRSKSLSKE 598

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
           +WDDVVFGDSISKFPAYE+V L H GF+RPVVLFGP++D+AR+KL KDFPDKF +P+  N
Sbjct: 599 NWDDVVFGDSISKFPAYEKVVLSHTGFVRPVVLFGPISDIAREKLTKDFPDKFLSPQLEN 658

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                + K + + + S               +D M +GK ++    D      D +   +
Sbjct: 659 NTTDGSKKISGIIRLSAI-------------RDIMDRGKHALL---DVTPNAVDRLNYAQ 702

Query: 547 DSMY--------QGKDIKKEVKI-----------KLFEQSQKLEKVWSHVFTGTITLSGV 587
              Y          K + KE++            KL EQ QKLEKVWSHVFT ++TL+G 
Sbjct: 703 --FYPIVIMLRADNKQVIKELRAGLPKTAHKSSKKLLEQCQKLEKVWSHVFTSSLTLNGG 760

Query: 588 DVWYRKTRELIEKQQSSPVWISETK 612
           D WYRK RELI+K QSSP W+SETK
Sbjct: 761 DAWYRKLRELIDKHQSSPTWVSETK 785

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697081|ref|XP_003240226.1| PREDICTED: tight junction protein ZO-2-like isoform 4 [Acyrthosiphon pisum]

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/265 (54%), Positives = 182/265 (68%), Gaps = 37/265 (13%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +GRNNQEVQKGIIPNKARAEELATAQFNATKKE++ASES+G FF+RR+++HRRSKSLSK+
Sbjct: 595 IGRNNQEVQKGIIPNKARAEELATAQFNATKKEMNASESKGGFFRRRKHNHRRSKSLSKE 654

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
           +WDDVVFGDSISKFPAYE+V L H GF+RPVVLFGP++D+AR+KL KDFPDKF +P+   
Sbjct: 655 NWDDVVFGDSISKFPAYEKVVLSHTGFVRPVVLFGPISDIAREKLTKDFPDKFLSPQ--- 711

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                 +++     S K  G+ +    +   +D M +GK ++    D      D +   +
Sbjct: 712 ------LENNTTDGSKKISGIIR----LSAIRDIMDRGKHALL---DVTPNAVDRLNYAQ 758

Query: 547 DSMY--------QGKDIKKEVKI-----------KLFEQSQKLEKVWSHVFTGTITLSGV 587
              Y          K + KE++            KL EQ QKLEKVWSHVFT ++TL+G 
Sbjct: 759 --FYPIVIMLRADNKQVIKELRAGLPKTAHKSSKKLLEQCQKLEKVWSHVFTSSLTLNGG 816

Query: 588 DVWYRKTRELIEKQQSSPVWISETK 612
           D WYRK RELI+K QSSP W+SETK
Sbjct: 817 DAWYRKLRELIDKHQSSPTWVSETK 841

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697079|ref|XP_003240225.1| PREDICTED: tight junction protein ZO-2-like isoform 3 [Acyrthosiphon pisum]

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/265 (54%), Positives = 182/265 (68%), Gaps = 37/265 (13%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +GRNNQEVQKGIIPNKARAEELATAQFNATKKE++ASES+G FF+RR+++HRRSKSLSK+
Sbjct: 520 IGRNNQEVQKGIIPNKARAEELATAQFNATKKEMNASESKGGFFRRRKHNHRRSKSLSKE 579

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
           +WDDVVFGDSISKFPAYE+V L H GF+RPVVLFGP++D+AR+KL KDFPDKF +P+   
Sbjct: 580 NWDDVVFGDSISKFPAYEKVVLSHTGFVRPVVLFGPISDIAREKLTKDFPDKFLSPQ--- 636

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                 +++     S K  G+ +    +   +D M +GK ++    D      D +   +
Sbjct: 637 ------LENNTTDGSKKISGIIR----LSAIRDIMDRGKHALL---DVTPNAVDRLNYAQ 683

Query: 547 DSMY--------QGKDIKKEVKI-----------KLFEQSQKLEKVWSHVFTGTITLSGV 587
              Y          K + KE++            KL EQ QKLEKVWSHVFT ++TL+G 
Sbjct: 684 --FYPIVIMLRADNKQVIKELRAGLPKTAHKSSKKLLEQCQKLEKVWSHVFTSSLTLNGG 741

Query: 588 DVWYRKTRELIEKQQSSPVWISETK 612
           D WYRK RELI+K QSSP W+SETK
Sbjct: 742 DAWYRKLRELIDKHQSSPTWVSETK 766

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697075|ref|XP_001950858.2| PREDICTED: tight junction protein ZO-2-like isoform 1 [Acyrthosiphon pisum]

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/265 (54%), Positives = 180/265 (67%), Gaps = 37/265 (13%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +GRNNQEVQKGIIPNKARAEELATAQFNATKKE++ASES+G FF+RR+++HRRSKSLSK+
Sbjct: 535 IGRNNQEVQKGIIPNKARAEELATAQFNATKKEMNASESKGGFFRRRKHNHRRSKSLSKE 594

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
           +WDDVVFGDSISKFPAYE+V L H GF+RPVVLFGP++D+AR+KL KDFPDKF +P+  N
Sbjct: 595 NWDDVVFGDSISKFPAYEKVVLSHTGFVRPVVLFGPISDIAREKLTKDFPDKFLSPQLEN 654

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                + K + + + S               +D M +GK ++    D      D +   +
Sbjct: 655 NTTDGSKKISGIIRLSAI-------------RDIMDRGKHALL---DVTPNAVDRLNYAQ 698

Query: 547 DSMY--------QGKDIKKEVKI-----------KLFEQSQKLEKVWSHVFTGTITLSGV 587
              Y          K + KE++            KL EQ QKLEKVWSHVFT ++TL+G 
Sbjct: 699 --FYPIVIMLRADNKQVIKELRAGLPKTAHKSSKKLLEQCQKLEKVWSHVFTSSLTLNGG 756

Query: 588 DVWYRKTRELIEKQQSSPVWISETK 612
           D WYRK RELI+K QSSP W+SETK
Sbjct: 757 DAWYRKLRELIDKHQSSPTWVSETK 781

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041813|ref|XP_001848644.1| tight junction protein [Culex quinquefasciatus] gi|167865403|gb|EDS28786.1| tight junction protein [Culex quinquefasciatus]

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 134/256 (52%), Positives = 177/256 (69%), Gaps = 22/256 (8%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +G  +QE+Q+G+IPNKARAEELATAQFNATKKE++ASESR SFF+R+R++HRRSKSLS++
Sbjct: 520 IGHGHQELQRGVIPNKARAEELATAQFNATKKEMNASESRVSFFRRKRSTHRRSKSLSRE 579

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP---- 482
           +WDDVVF DSISKFPAYERV LRHPGF+RPVVLFGPV+D+AR++L+KDF DK++AP    
Sbjct: 580 NWDDVVFSDSISKFPAYERVVLRHPGFVRPVVLFGPVSDIARERLVKDFSDKYTAPLQDD 639

Query: 483 ----RKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQG 538
               +    +  + I+D           M +GK ++     +              ++  
Sbjct: 640 DKGSKCGGIVRLSNIRDI----------MDRGKHALLDITPNAVDRLNYAQFYPIVIFLK 689

Query: 539 KDSMYQGKDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRE 596
            D+ +  K  + QG  K   K  K KLFEQ QKLE+VWSHVF+ TI+L+  D WYRK R+
Sbjct: 690 ADTKHSVKQ-LRQGLPKSQHKSSK-KLFEQCQKLERVWSHVFSATISLNDPDTWYRKLRD 747

Query: 597 LIEKQQSSPVWISETK 612
            I++QQS  VW+SETK
Sbjct: 748 FIDQQQSGAVWMSETK 763

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793836|ref|XP_001120987.2| PREDICTED: tight junction protein ZO-1 [Apis mellifera]

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/265 (54%), Positives = 185/265 (69%), Gaps = 34/265 (12%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +GRNNQEVQKGIIPNKARAEELATAQFNATKKE+SASE+RGSFF+RR++SHRRSKSL +D
Sbjct: 467 IGRNNQEVQKGIIPNKARAEELATAQFNATKKEMSASENRGSFFRRRKSSHRRSKSLGRD 526

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
           HWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P+  N
Sbjct: 527 HWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQMEN 586

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
            +      D  + ++ K  G+ +    +   ++ M +GK ++    D      D +   +
Sbjct: 587 QL------DDNVGKNMKSSGIIR----LSAIREVMDRGKHALL---DITPNAVDRLNYAQ 633

Query: 547 DSMY--------QGKDIKKEVKI-----------KLFEQSQKLEKVWSHVFTGTITLSGV 587
              Y        + K I KE++            KL EQ QKL+K+WSH+F+  ITL+  
Sbjct: 634 --FYPIVIFLKAETKQIIKEMRAGVPKSAHKSSKKLLEQCQKLDKIWSHIFSAMITLTTP 691

Query: 588 DVWYRKTRELIEKQQSSPVWISETK 612
           + WYRK RELI++QQ   +W+S+TK
Sbjct: 692 EAWYRKLRELIDRQQQGLLWMSQTK 716

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014650|ref|XP_002427998.1| tight junction protein tama, putative [Pediculus humanus corporis] gi|212512517|gb|EEB15260.1| tight junction protein tama, putative [Pediculus humanus corporis]

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 152/256 (59%), Positives = 186/256 (72%), Gaps = 17/256 (6%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +GRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFF+RRRNSHRRSKSLS+D
Sbjct: 472 IGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFRRRRNSHRRSKSLSRD 531

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
           HWDDVVF DSISKFPAYERV LRHPGFIRPVVLFGPVAD+ARDK+LKDFPDKF++P+  N
Sbjct: 532 HWDDVVFSDSISKFPAYERVFLRHPGFIRPVVLFGPVADIARDKILKDFPDKFTSPQLDN 591

Query: 487 FILWATIKDTAMYQSSKEPGMYQG---KDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMY 543
                 ++D    +S K  G+ +    ++ M +GK ++     +     +        ++
Sbjct: 592 -----NMEDAP--KSQKSSGIIRLSAIREIMDRGKHALLDITPNAVDRLNYAQFYPIVIF 644

Query: 544 QGKDSMYQGKDIKKEV-------KIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRE 596
              ++ +  K+++  V         KL EQ QKLEKVW H F+  ITL+  + WYRK RE
Sbjct: 645 LKAETKHVIKELRSAVSKGSHKSSKKLLEQCQKLEKVWGHTFSCFITLTSPESWYRKLRE 704

Query: 597 LIEKQQSSPVWISETK 612
           LI+KQQ+SPVW+SETK
Sbjct: 705 LIDKQQTSPVWMSETK 720

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479005|ref|XP_001607015.2| PREDICTED: tight junction protein ZO-1-like [Nasonia vitripennis]

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 190/453 (41%), Positives = 253/453 (55%), Gaps = 99/453 (21%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIIL--GNK--IFVKEVTHRLDNNASPGTHQ-LAEGDVLLK 249
           P+P+ +  Q     K+   G+ L  GN+  +FV  V        SP + Q L  GD +LK
Sbjct: 552 PDPRFITFQ-----KEGSVGVRLTGGNETGVFVTAV-----QPGSPASLQGLQPGDKILK 601

Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNY 309
           +N+    G++ +EA   + S +E++ L ++    R   Y E     GK +++   + T++
Sbjct: 602 VNDMDMKGVTREEAVLFLLSLQEQIDLIVQH---RRQEY-EQIVASGKGDSFH--IKTHF 655

Query: 310 SSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDS--- 366
                Y QP           DK  +  R+G             +   V  ++N +     
Sbjct: 656 H----YEQP-----------DKGEMSFRSG------------DVFHVVDTLHNGVVGAWQ 688

Query: 367 ---LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSL 423
              +GRNNQEVQKGIIPNKARAEELATAQFNATKKE+SASESRGSFF+RRR SHRRSKSL
Sbjct: 689 VYRIGRNNQEVQKGIIPNKARAEELATAQFNATKKEMSASESRGSFFRRRRGSHRRSKSL 748

Query: 424 SKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPR 483
            +DHWDDVVF DS+SKFPAYERV LRHPGFIRPVVLFGPVADLAR+KLLKDFPDKF++P+
Sbjct: 749 GRDHWDDVVFSDSVSKFPAYERVVLRHPGFIRPVVLFGPVADLAREKLLKDFPDKFTSPQ 808

Query: 484 KFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMY 543
                           +S  E G   GK +   G   +   +E M +GK ++    D   
Sbjct: 809 T---------------ESQIEEG---GKSTKSSGIIRLSAIREVMDRGKHALL---DITP 847

Query: 544 QGKDSM-------------YQGKDIKKEVKI-----------KLFEQSQKLEKVWSHVFT 579
              D +              + K + KE+++           KL EQ QKL+K+W HVF+
Sbjct: 848 NAVDRLNYAQFYPIVIFLKAETKQMIKEMRVGVPKSAHKSSKKLLEQCQKLDKIWGHVFS 907

Query: 580 GTITLSGVDVWYRKTRELIEKQQSSPVWISETK 612
             ITL+  + WYRK RELI+ QQ  P+W+S+TK
Sbjct: 908 AVITLNSPESWYRKLRELIDWQQQGPLWMSQTK 940

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030048|gb|EGI69873.1| Tight junction protein ZO-1 [Acromyrmex echinatior]

 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/270 (54%), Positives = 182/270 (67%), Gaps = 44/270 (16%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +GRNNQEVQKGIIPNKARAEELATAQFNATKKE+SA+ESRGSFF+RRRNSHRRSKSL +D
Sbjct: 501 IGRNNQEVQKGIIPNKARAEELATAQFNATKKEMSANESRGSFFRRRRNSHRRSKSLGRD 560

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
           HWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P+   
Sbjct: 561 HWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQ--- 617

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                        +S  E G   GK++   G   +   +E M +GK ++    D      
Sbjct: 618 ------------MESQMEDGT--GKNTKTSGIIRLSAIREVMDRGKHALL---DITPNAV 660

Query: 547 DSM-------------YQGKDIKKEVKI-----------KLFEQSQKLEKVWSHVFTGTI 582
           D +              + K + KE++            KL EQ QKL+K+W HVF+  I
Sbjct: 661 DRLNYAQFYPIVIFLKAETKQVIKEMRAGIPKSAHKSSKKLLEQCQKLDKIWGHVFSAVI 720

Query: 583 TLSGVDVWYRKTRELIEKQQSSPVWISETK 612
           TL+  + WYRK RELI++QQ S +W+S+TK
Sbjct: 721 TLNAPEAWYRKLRELIDRQQQSSLWMSQTK 750

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213715|gb|EFN89064.1| Tight junction protein ZO-1 [Harpegnathos saltator]

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/270 (54%), Positives = 180/270 (66%), Gaps = 44/270 (16%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +GRNNQEVQKGIIPNKARAEELATAQFNATKKE+SASESRGSFF+RRR SHRRSKSL +D
Sbjct: 494 IGRNNQEVQKGIIPNKARAEELATAQFNATKKEMSASESRGSFFRRRRTSHRRSKSLGRD 553

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
           HWDDVVF DS+SKFPAYERV LRHPGF+RPVVLFGPVADLAR+KLLKDFPDKF++P+   
Sbjct: 554 HWDDVVFSDSVSKFPAYERVILRHPGFVRPVVLFGPVADLAREKLLKDFPDKFTSPQ--- 610

Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                        +S  E G   GK++   G   +   +E M +GK ++    D      
Sbjct: 611 ------------MESQMEDG--SGKNTKTSGIIRLSAIREVMDRGKHALL---DITPNAV 653

Query: 547 DSM-------------YQGKDIKKEVKI-----------KLFEQSQKLEKVWSHVFTGTI 582
           D +              + K + KE++            KL EQ QKL+K+W HVF+  I
Sbjct: 654 DRLNYAQFYPIVIFLKAETKQVIKEMRAGIPKSAHKSSKKLLEQCQKLDKIWGHVFSAVI 713

Query: 583 TLSGVDVWYRKTRELIEKQQSSPVWISETK 612
           TL+  + WYRK RELI++QQ   +W+S+TK
Sbjct: 714 TLNAPEAWYRKLRELIDRQQQGSLWMSQTK 743

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	627
FB|FBgn0262614	2090	pyd "polychaetoid" [Drosophila	0.397	0.119	0.484	5.1e-74
ZFIN|ZDB-GENE-040718-58	1204	tjp2b "tight junction protein	0.390	0.203	0.319	5.6e-44
UNIPROTKB|I3L5H6	948	I3L5H6 "Uncharacterized protei	0.400	0.264	0.307	6.8e-44
UNIPROTKB|G5E9E7	1692	TJP1 "Tight junction protein 1	0.400	0.148	0.307	5.9e-43
UNIPROTKB|F1N2D3	1712	TJP1 "Uncharacterized protein"	0.400	0.146	0.307	6e-43
UNIPROTKB|F1PMA1	1739	TJP1 "Tight junction protein Z	0.400	0.144	0.307	6.3e-43
UNIPROTKB|J9PAE7	1743	TJP1 "Tight junction protein Z	0.400	0.144	0.307	6.3e-43
MGI|MGI:98759	1745	Tjp1 "tight junction protein 1	0.400	0.143	0.307	6.4e-43
UNIPROTKB|Q07157	1748	TJP1 "Tight junction protein Z	0.400	0.143	0.307	6.4e-43
UNIPROTKB|G3V1L9	1768	TJP1 "Tight junction protein 1	0.400	0.141	0.307	6.6e-43

FB|FBgn0262614 pyd "polychaetoid" [Drosophila melanogaster (taxid:7227)]

 Score = 545 (196.9 bits), Expect = 5.1e-74, Sum P(2) = 5.1e-74
 Identities = 122/252 (48%), Positives = 157/252 (62%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +GR +QE+Q+G+IPNK+RAEELATAQFNATKKE++A+ESRG                  +
Sbjct:   544 IGRGHQEMQRGVIPNKSRAEELATAQFNATKKEMNANESRGNFFRRRRSTHRRSKSLSRE 603

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
             +WDDVVF DSISKFPAYERV LRHPGF+RPVVLFGPV+DLAR++L KDFPDKFS P + +
Sbjct:   604 NWDDVVFSDSISKFPAYERVVLRHPGFVRPVVLFGPVSDLARERLAKDFPDKFSTPLQDD 663

Query:   487 FILWATI-KDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                 AT  K   +  S+    M +GK ++     +              ++   DS +  
Sbjct:   664 DKSAATSGKCRIVRLSNIRDVMDRGKHALLDITPNAVDRLNYAQFYPVVIFLKTDSKHVI 723

Query:   546 KDSMYQ-GKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSS 604
             K   +   K   K  K KL EQ QKLE+VWSH+F+  I LS  + WYRK R+ I+ QQS 
Sbjct:   724 KQLRHGLPKAAHKSSK-KLLEQCQKLERVWSHIFSTQIALSDEESWYRKLRDSIDLQQSG 782

Query:   605 PVWISETKSNLD 616
              VW+SE+K   D
Sbjct:   783 AVWMSESKVPYD 794

GO:0004385 "guanylate kinase activity" evidence=ISS;NAS

GO:0007254 "JNK cascade" evidence=NAS

GO:0005912 "adherens junction" evidence=IDA;NAS;TAS

GO:0007391 "dorsal closure" evidence=NAS;TAS

GO:0046328 "regulation of JNK cascade" evidence=NAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0035156 "fusion cell fate specification" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IGI;IMP

GO:0030424 "axon" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0005917 "nephrocyte diaphragm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0050839 "cell adhesion molecule binding" evidence=IPI

GO:0036059 "nephrocyte diaphragm assembly" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0060439 "trachea morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

ZFIN|ZDB-GENE-040718-58 tjp2b "tight junction protein 2b (zona occludens 2)" [Danio rerio (taxid:7955)]

 Score = 281 (104.0 bits), Expect = 5.6e-44, Sum P(2) = 5.6e-44
 Identities = 85/266 (31%), Positives = 126/266 (47%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             LG++NQ ++KGIIPNK+RAE++A  Q N T K   +  +                    +
Sbjct:   654 LGKDNQLLEKGIIPNKSRAEQMANVQ-N-THKGTGSDRADFWRLRGQRAAKKKDLRKSRE 711

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
                  V     ++FPAYERV LR  GF RPVVLFGP+AD A +KL  + PD+F       
Sbjct:   712 ESSAAV----ATRFPAYERVVLREAGFRRPVVLFGPIADAASEKLASELPDEF------- 760

Query:   487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
              I     KD    +SS    +   +  + Q K ++           +        ++   
Sbjct:   761 VIAKTEPKDAGSEKSSGVVRLNTIRQIIEQDKHALLDVTPKAVDTLNYTQWYPIVIFFNP 820

Query:   547 DSMYQGKDIKKEV-------KIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELI 598
             DS +  K +++ V         KL++Q+ KL K  SH+FT  I L+   D WY   +E I
Sbjct:   821 DSKHGVKAMRQRVIPSSNRSARKLYDQALKLRKTCSHLFTAVIDLNSANDAWYGSLKEAI 880

Query:   599 EKQQSSPVWISETKSNLDIRELDIRE 624
              +QQS  VW+SE K +    +LD+ +
Sbjct:   881 REQQSLAVWVSEGKLDGTEGDLDVHD 906

GO:0005923 "tight junction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3L5H6 I3L5H6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 283 (104.7 bits), Expect = 6.8e-44, Sum P(2) = 6.8e-44
 Identities = 81/263 (30%), Positives = 134/263 (50%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct:   624 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 680

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +   
Sbjct:   681 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP 738

Query:   487 FILWATIKDTAMYQ-SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                    + + + +  + +  + Q K ++     +              ++   DS  QG
Sbjct:   739 RDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSK-QG 797

Query:   546 KDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQ 602
               +M      + +K  + KL+E+S KL K   H+FT TI L+ + D WY   +E I++QQ
Sbjct:   798 VKTMRMRLCPESRKSAR-KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 856

Query:   603 SSPVWISETKSN-LDIRELDIRE 624
             +  VW+SE K++     +LD+ +
Sbjct:   857 NQLVWVSEGKADGATSDDLDLHD 879

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|G5E9E7 TJP1 "Tight junction protein 1 (Zona occludens 1), isoform CRA_e" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
 Identities = 81/263 (30%), Positives = 134/263 (50%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct:   566 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 622

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +   
Sbjct:   623 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP 680

Query:   487 FILWATIKDTAMYQ-SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                    + + + +  + +  + Q K ++     +              ++   DS  QG
Sbjct:   681 RDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSK-QG 739

Query:   546 KDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQ 602
               +M      + +K  + KL+E+S KL K   H+FT TI L+ + D WY   +E I++QQ
Sbjct:   740 VKTMRMRLCPESRKSAR-KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 798

Query:   603 SSPVWISETKSN-LDIRELDIRE 624
             +  VW+SE K++     +LD+ +
Sbjct:   799 NQLVWVSEGKADGATSDDLDLHD 821

GO:0005923 "tight junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|F1N2D3 TJP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 283 (104.7 bits), Expect = 6.0e-43, Sum P(2) = 6.0e-43
 Identities = 81/263 (30%), Positives = 134/263 (50%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct:   531 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 587

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +   
Sbjct:   588 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP 645

Query:   487 FILWATIKDTAMYQ-SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                    + + + +  + +  + Q K ++     +              ++   DS  QG
Sbjct:   646 RDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSK-QG 704

Query:   546 KDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQ 602
               +M      + +K  + KL+E+S KL K   H+FT TI L+ + D WY   +E I++QQ
Sbjct:   705 VKTMRMRLCPESRKSAR-KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 763

Query:   603 SSPVWISETKSN-LDIRELDIRE 624
             +  VW+SE K++     +LD+ +
Sbjct:   764 NQLVWVSEGKADGATSDDLDLHD 786

GO:0046581 "intercellular canaliculus" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|F1PMA1 TJP1 "Tight junction protein ZO-1" [Canis lupus familiaris (taxid:9615)]

 Score = 283 (104.7 bits), Expect = 6.3e-43, Sum P(2) = 6.3e-43
 Identities = 81/263 (30%), Positives = 134/263 (50%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct:   561 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 617

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +   
Sbjct:   618 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP 675

Query:   487 FILWATIKDTAMYQ-SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                    + + + +  + +  + Q K ++     +              ++   DS  QG
Sbjct:   676 RDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSK-QG 734

Query:   546 KDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQ 602
               +M      + +K  + KL+E+S KL K   H+FT TI L+ + D WY   +E I++QQ
Sbjct:   735 VKTMRMRLCPESRKSAR-KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 793

Query:   603 SSPVWISETKSN-LDIRELDIRE 624
             +  VW+SE K++     +LD+ +
Sbjct:   794 NQLVWVSEGKADGATSDDLDLHD 816

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|J9PAE7 TJP1 "Tight junction protein ZO-1" [Canis lupus familiaris (taxid:9615)]

 Score = 283 (104.7 bits), Expect = 6.3e-43, Sum P(2) = 6.3e-43
 Identities = 81/263 (30%), Positives = 134/263 (50%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct:   549 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 605

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +   
Sbjct:   606 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP 663

Query:   487 FILWATIKDTAMYQ-SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                    + + + +  + +  + Q K ++     +              ++   DS  QG
Sbjct:   664 RDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSK-QG 722

Query:   546 KDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQ 602
               +M      + +K  + KL+E+S KL K   H+FT TI L+ + D WY   +E I++QQ
Sbjct:   723 VKTMRMRLCPESRKSAR-KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 781

Query:   603 SSPVWISETKSN-LDIRELDIRE 624
             +  VW+SE K++     +LD+ +
Sbjct:   782 NQLVWVSEGKADGATSDDLDLHD 804

GO:0005923 "tight junction" evidence=IEA

MGI|MGI:98759 Tjp1 "tight junction protein 1" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 6.4e-43, Sum P(2) = 6.4e-43
 Identities = 81/263 (30%), Positives = 134/263 (50%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct:   562 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 618

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +   
Sbjct:   619 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP 676

Query:   487 FILWATIKDTAMYQ-SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                    + + + +  + +  + Q K ++     +              ++   DS  QG
Sbjct:   677 RDAGTDHRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSK-QG 735

Query:   546 KDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQ 602
               +M      + +K  + KL+E+S KL K   H+FT TI L+ + D WY   +E I++QQ
Sbjct:   736 VKTMRMRLCPESRKSAR-KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 794

Query:   603 SSPVWISETKSN-LDIRELDIRE 624
             +  VW+SE K++     +LD+ +
Sbjct:   795 NQLVWVSEGKADGATSDDLDLHD 817

GO:0001825 "blastocyst formation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0005921 "gap junction" evidence=IEA

GO:0005923 "tight junction" evidence=ISO;IDA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0014704 "intercalated disc" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030054 "cell junction" evidence=IDA

GO:0043296 "apical junction complex" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0046581 "intercellular canaliculus" evidence=IDA

UNIPROTKB|Q07157 TJP1 "Tight junction protein ZO-1" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 6.4e-43, Sum P(2) = 6.4e-43
 Identities = 81/263 (30%), Positives = 134/263 (50%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct:   562 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 618

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +   
Sbjct:   619 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP 676

Query:   487 FILWATIKDTAMYQ-SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                    + + + +  + +  + Q K ++     +              ++   DS  QG
Sbjct:   677 RDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSK-QG 735

Query:   546 KDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQ 602
               +M      + +K  + KL+E+S KL K   H+FT TI L+ + D WY   +E I++QQ
Sbjct:   736 VKTMRMRLCPESRKSAR-KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 794

Query:   603 SSPVWISETKSN-LDIRELDIRE 624
             +  VW+SE K++     +LD+ +
Sbjct:   795 NQLVWVSEGKADGATSDDLDLHD 817

GO:0005516 "calmodulin binding" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043116 "negative regulation of vascular permeability" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0046581 "intercellular canaliculus" evidence=IEA

GO:0071000 "response to magnetism" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0005921 "gap junction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005923 "tight junction" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:1901350 "cell-cell signaling involved in cell-cell junction organization" evidence=NAS

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0043296 "apical junction complex" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0007043 "cell-cell junction assembly" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006921 "cellular component disassembly involved in execution phase of apoptosis" evidence=TAS

GO:0035329 "hippo signaling cascade" evidence=TAS

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|G3V1L9 TJP1 "Tight junction protein 1 (Zona occludens 1), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 6.6e-43, Sum P(2) = 6.6e-43
 Identities = 81/263 (30%), Positives = 134/263 (50%)

Query:   367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
             +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct:   562 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 618

Query:   427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +   
Sbjct:   619 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP 676

Query:   487 FILWATIKDTAMYQ-SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQG 545
                    + + + +  + +  + Q K ++     +              ++   DS  QG
Sbjct:   677 RDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSK-QG 735

Query:   546 KDSMYQG--KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQ 602
               +M      + +K  + KL+E+S KL K   H+FT TI L+ + D WY   +E I++QQ
Sbjct:   736 VKTMRMRLCPESRKSAR-KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQ 794

Query:   603 SSPVWISETKSN-LDIRELDIRE 624
             +  VW+SE K++     +LD+ +
Sbjct:   795 NQLVWVSEGKADGATSDDLDLHD 817

GO:0005923 "tight junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	627
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-19
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-17
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-15
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	6e-13
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-08
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	3e-08
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	5e-08
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	2e-07
pfam13180	81	pfam13180, PDZ_2, PDZ domain	2e-07
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	4e-07
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	1e-06
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	2e-06
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	3e-06
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	3e-06
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	5e-06
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	8e-06
cd11859	62	cd11859, SH3_ZO, Src homology 3 domain of the Tigh	1e-05
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	2e-05
COG0265	347	COG0265, DegQ, Trypsin-like serine proteases, typi	4e-05
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	7e-04
TIGR00225	334	TIGR00225, prc, C-terminal peptidase (prc)	8e-04
cd00991	79	cd00991, PDZ_archaeal_metalloprotease, PDZ domain	0.001
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	0.002
PRK10779	449	PRK10779, PRK10779, zinc metallopeptidase RseP; Pr	0.004

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 82.6 bits (205), Expect = 2e-19
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 51  PRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
            R +T +K+  G +G  L GG     GIFV+ V+PG PA   GL+ GD+IL+VN + ++G
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEG 60

Query: 107 ITREEAVLFLLSLQDQIHLIVQ 128
           +T EEAV  L +  D++ L V+
Sbjct: 61  LTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 51  PRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           PR +  +K  G +G  L GG     G+ V++V PGSPA+  GL+ GD IL+VN   ++G+
Sbjct: 2   PRLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLRVGDVILEVNGTSVEGL 61

Query: 108 TREEAVLFLLSLQDQIHLIVQ 128
           T  EAV  L     ++ L V 
Sbjct: 62  THLEAVDLLKKAGGKVTLTVL 82

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 71.1 bits (175), Expect = 2e-15
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 57  QKEGSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
              G +G  L GG+    GIFV+ V PG  A   GLQ GD+IL +N  D++ ++ +EAVL
Sbjct: 7   SGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGGLQEGDRILSINGQDLENLSHDEAVL 66

Query: 115 FLLSLQDQIHLIVQ 128
            L     ++ L + 
Sbjct: 67  ALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 63.9 bits (156), Expect = 6e-13
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query: 60  GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
           G +G  + GG + G+ V +V+PGSPA   GLQ GD IL VN  D+K +T E+  
Sbjct: 1   GGLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVA 54

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 201 RVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPGTH-QLAEGDVLLKINNH 253
            V L K       G  L      G  IFV  V         P     L  GD +L++N  
Sbjct: 3   TVTLRKD-PGGGLGFSLRGGKDSGGGIFVSRVEPG-----GPAERGGLRVGDRILEVNGV 56

Query: 254 PTDGMSVKEARKLIDSSKEKLSLTIR 279
             +G++ +EA +L+ +S ++++LT+R
Sbjct: 57  SVEGLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 40  DLFSIFFVEPDPRFITFQKEGS---VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKI 96
           D  S +    D         G    +GI L   +  G+ V +   GSPA+  G++PGD I
Sbjct: 77  DPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVI 136

Query: 97  LKVNDMDMKGITREEAVLFL 116
           +K++   + G++ +EAV  +
Sbjct: 137 IKIDGKSVGGVSLDEAVKLI 156

Length = 406

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 60  GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFL 116
           G +G+ L   +  G+ +T+V PGSPA+  G++ GD I+ ++   + G++ E+ V  L
Sbjct: 2   GGIGLELKYDDG-GLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLL 57

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           G+ V +V PGSPA+  GL+PGD IL VN   +K + 
Sbjct: 25  GVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVA 60

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 60  GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL 119
           G +G+R+      G+ V +V+ GSPA+  GL+PGD IL ++   +  +T    V+     
Sbjct: 1   GDIGVRVVQNEGTGVTVVSVKEGSPAAKAGLKPGDIILSIDGKKVNSLTELIEVILNGKP 60

Query: 120 QDQIHLIVQNRRDEYEHV 137
            D + L V  R  + + V
Sbjct: 61  GDTVKLTVY-RDGKKKTV 77

Length = 81

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 12/179 (6%)

Query: 428 WDDVVFGDSISKFP-AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
               +  + I + P A+ERV        RP  + G   D       ++F D   +     
Sbjct: 4   GKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNG--VDYHFVSK-EEFEDDIKSG---L 57

Query: 487 FILWATIKDTAMYQSSKEP---GMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMY 543
           F+ W   +    Y +SKE       +GK  +        +           ++    S  
Sbjct: 58  FLEWGEYEG-NYYGTSKETIRQVAEKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSE 116

Query: 544 QGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQ 602
           + +  + Q      E   K    +QK  + + H+F   I    ++  Y + +E++E +Q
Sbjct: 117 ELERRLRQRGTETSERIQKRLAAAQKEAQEY-HLFDYVIVNDDLEDAYEELKEILEAEQ 174

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
           ++V DRI+  NG+S+E + +  AV++L++SG  VTL VR
Sbjct: 44  LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 14/90 (15%)

Query: 198 QTLRVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPG-THQLAEGDVLLKI 250
           +   V+L K       G  L      G  + V  V        SP     L  GDV+L++
Sbjct: 1   EPRLVELEKGGGG--LGFSLVGGKDEGGGVVVSSVVPG-----SPAAKAGLRVGDVILEV 53

Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           N    +G++  EA  L+  +  K++LT+ R
Sbjct: 54  NGTSVEGLTHLEAVDLLKKAGGKVTLTVLR 83

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
           ++  DRI+S NG  LEN+ +  AV  L+ SG  VTL + 
Sbjct: 42  LQEGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 60  GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVND 101
             +G    GG  +   +  V PGSPA+  GL+ GD+IL +N 
Sbjct: 1   AILGFVP-GGPPIEPVIGEVVPGSPAAKAGLKAGDRILAING 41

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 46/221 (20%), Positives = 71/221 (32%), Gaps = 72/221 (32%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G  V  V PGSPA   GL+ GD I  VN   +              L+  I         
Sbjct: 258 GALVAQVLPGSPAEKAGLKAGDVITSVNGKPISSFA---------DLRRAIGT------- 301

Query: 133 EYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR------ 186
                          +K   ++                + +LR  G   T+ V       
Sbjct: 302 ---------------LKPGKKV---------------TLGILRK-GKEKTITVTLGASPE 330

Query: 187 -----RRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQL 241
                    L  +    +  ++     K D  G+++      K V+      A      L
Sbjct: 331 EQASSSNPFLGLTVANLSPEIRKELRLKGDVKGVVV-----TKVVSGSPAARA-----GL 380

Query: 242 AEGDVLLKINNHPTDGMSVKEARKLIDSSKEK--LSLTIRR 280
             GDV+L +N  P    SV E RK++  +K+   ++L I R
Sbjct: 381 QPGDVILSVNQQPVS--SVAELRKVLARAKKGGRVALLILR 419

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++V D I+  NG S+E + +  AV +L+ +G  VTL V R 
Sbjct: 44  LRVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|212793 cd11859, SH3_ZO, Src homology 3 domain of the Tight junction proteins, Zonula occludens (ZO) proteins

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 13/20 (65%), Positives = 20/20 (100%)

Query: 367 LGRNNQEVQKGIIPNKARAE 386
           +GRN+QE+++G+IPNK+RAE
Sbjct: 43  VGRNHQELERGVIPNKSRAE 62

ZO proteins are scaffolding proteins that associate with each other and with other proteins of the tight junction, zonula adherens, and gap junctions. They play roles in regulating cytoskeletal dynamics at these cell junctions. They are considered members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. Vertebrates contain three ZO proteins (ZO-1, ZO-2, and ZO-3) with redundant and non-redundant roles. They contain three PDZ domains, followed by SH3 and GuK domains; in addition, ZO-1 and ZO-2 contains a proline-rich (PR) actin binding domain at the C-terminus while ZO-3 contains this PR domain between the second and third PDZ domains. The C-terminal regions of the three ZO proteins are unique. The SH3 domain of ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G+ VT V  GSPA+  GLQPGD IL VN   +  +     VL       ++ L++     
Sbjct: 363 GVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLARAKKGGRVALLILRGGA 422

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G  V  V PGSPA+  G++ GD I  VN   +  ++   A +      D++   ++  R 
Sbjct: 271 GAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEV--ALKLLRG 328

Query: 133 EYEHVVA 139
             E  +A
Sbjct: 329 GKERELA 335

Length = 347

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR 279
           IFV EV        +     L EGD +L IN    + +S  EA   +  S  +++LTI 
Sbjct: 26  IFVSEVLP----GGAAEAGGLQEGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc)

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 62  VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
           +GI++ G +   I + +   GSPA   G++PGDKI+K+N   + G++ ++AV
Sbjct: 53  IGIQV-GMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAV 103

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair]. Length = 334

>gnl|CDD|238491 cd00991, PDZ_archaeal_metalloprotease, PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           G+ +  V  GSPA    L  GD I  +N   +  + 
Sbjct: 11  GVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLE 46

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI-DSSKEKLSLTIR 279
           + V  V     + A      L  GDV+L +N      +++++  +L+     EK++LT+R
Sbjct: 15  VVVLSVEP--GSPAERA--GLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTVR 70

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 61  SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVN 100
           S+GIR  G  ++   +  VQP S AS  GLQ GD+I+KV+
Sbjct: 211 SLGIRPRGP-QIEPVLAEVQPNSAASKAGLQAGDRIVKVD 249

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	627
KOG0609|consensus	542		100.0
KOG3580|consensus	1027		100.0
KOG0708|consensus	359		100.0
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.92
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.9
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.89
KOG3209|consensus	984		99.89
PRK14737	186	gmk guanylate kinase; Provisional	99.87
PLN02772	398	guanylate kinase	99.87
PRK10139	455	serine endoprotease; Provisional	99.81
KOG3209|consensus	984		99.8
PRK10942	473	serine endoprotease; Provisional	99.8
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.8
KOG0707|consensus	231		99.71
PRK14738	206	gmk guanylate kinase; Provisional	99.55
KOG3580|consensus	1027		99.42
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.42
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.39
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.36
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.31
KOG3605|consensus	829		99.27
PRK00300	205	gmk guanylate kinase; Provisional	99.26
KOG3812|consensus	475		99.25
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.19
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.13
PRK10898	353	serine endoprotease; Provisional	99.06
KOG3550|consensus	207		99.06
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	99.03
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.98
KOG3550|consensus	207		98.96
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.95
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.92
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.82
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	98.77
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.76
KOG3553|consensus	124		98.75
KOG3551|consensus	506		98.71
KOG3549|consensus	505		98.66
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.62
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.59
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.58
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.53
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.52
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.5
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.44
KOG1892|consensus	1629		98.43
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.42
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.34
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.34
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.31
PRK11186	667	carboxy-terminal protease; Provisional	98.25
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.24
KOG3552|consensus	1298		98.22
KOG3571|consensus	626		98.18
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.16
KOG3549|consensus	505		98.15
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.14
KOG3606|consensus	358		98.11
KOG3651|consensus	429		98.1
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.03
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	97.95
KOG3551|consensus	506		97.94
KOG1892|consensus	1629		97.91
KOG3606|consensus	358		97.89
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.85
KOG1320|consensus	473		97.84
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.8
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.8
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	97.8
KOG3542|consensus	1283		97.79
KOG3553|consensus	124		97.77
PRK08356	195	hypothetical protein; Provisional	97.77
KOG1421|consensus	955		97.76
COG3709	192	Uncharacterized component of phosphonate metabolis	97.75
KOG3552|consensus	1298		97.69
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.67
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.67
KOG3571|consensus	626		97.67
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.67
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.58
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.48
PRK10139	455	serine endoprotease; Provisional	97.47
KOG4371|consensus	1332		97.45
PRK04040	188	adenylate kinase; Provisional	97.4
PRK10942	473	serine endoprotease; Provisional	97.36
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	97.29
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.27
KOG0609|consensus	542		97.2
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.16
KOG3651|consensus	429		97.15
KOG3129|consensus	231		97.08
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.01
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	96.96
PLN00049	389	carboxyl-terminal processing protease; Provisional	96.88
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.84
KOG1320|consensus	473		96.8
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	96.79
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	96.61
PRK10898	353	serine endoprotease; Provisional	96.49
KOG3542|consensus	1283		96.48
KOG0606|consensus	1205		96.44
KOG3938|consensus	334		96.44
PRK11186	667	carboxy-terminal protease; Provisional	96.43
KOG4407|consensus	1973		96.37
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.36
KOG3605|consensus	829		96.34
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.32
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.2
KOG1421|consensus	955		96.15
PRK09681	276	putative type II secretion protein GspC; Provision	96.07
PRK09681	276	putative type II secretion protein GspC; Provision	95.93
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	95.85
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	95.69
KOG3532|consensus	1051		95.34
KOG4792|consensus	293		95.3
PF12812	78	PDZ_1: PDZ-like domain	94.99
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	94.96
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	94.96
KOG3834|consensus	462		94.85
KOG3938|consensus	334		94.81
COG3031	275	PulC Type II secretory pathway, component PulC [In	94.74
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	93.91
COG3031	275	PulC Type II secretory pathway, component PulC [In	93.71
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	93.68
KOG1738|consensus	638		93.67
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	92.66
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	92.51
PTZ00451	244	dephospho-CoA kinase; Provisional	92.26
PRK06762	166	hypothetical protein; Provisional	90.92
PRK04182	180	cytidylate kinase; Provisional	90.88
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	90.59
PRK00698	205	tmk thymidylate kinase; Validated	90.42
KOG2199|consensus	462		90.31
KOG3532|consensus	1051		90.15
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	90.0
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	89.74
KOG3129|consensus	231		89.71
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	89.66
KOG3875|consensus	362		89.62
KOG0606|consensus	1205		89.54
KOG1118|consensus	366		88.78
PRK14731	208	coaE dephospho-CoA kinase; Provisional	88.43
PRK14732	196	coaE dephospho-CoA kinase; Provisional	85.89
PHA02530	300	pseT polynucleotide kinase; Provisional	85.81
PRK05480	209	uridine/cytidine kinase; Provisional	85.79
KOG4226|consensus	379		85.23
PF12812	78	PDZ_1: PDZ-like domain	85.17
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	84.61
COG3975	558	Predicted protease with the C-terminal PDZ domain	84.28
COG0750	375	Predicted membrane-associated Zn-dependent proteas	81.36
KOG1029|consensus	1118		81.16
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	80.64

>KOG0609|consensus

Probab=100.00  E-value=6.1e-68  Score=554.23  Aligned_cols=367  Identities=21%  Similarity=0.288  Sum_probs=306.8

Q ss_pred             EEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         200 LRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      ..|.+.|. .+..+|+++.    ..++|.+|.+|   |.+.+.+.|++||.|++|||+++.+.+.+++..+|+.+.+.++
T Consensus       124 riv~i~k~-~~eplG~Tik~~e~~~~~vARI~~G---G~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it  199 (542)
T KOG0609|consen  124 RIVRIVKN-TGEPLGATIRVEEDTKVVVARIMHG---GMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT  199 (542)
T ss_pred             EEEEEeec-CCCccceEEEeccCCccEEeeeccC---CcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence            34555553 3566777664    26999999999   7899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCcCCCCccccCcCCcCCCCCCCCCCCceeeCCCCCCCCCCCccCcCCCCCCCCCC--CCCcccccccCC
Q psy9827         276 LTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRS--RNPLLDVSLSQL  353 (627)
Q Consensus       276 l~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~--~gdil~v~~~~~  353 (627)
                      ++|.+..++.+                       ..+.+||||+|||   +|.+|+.+||++||++  +|||||| ++++
T Consensus       200 fkiiP~~~~~~-----------------------~~~~~~vra~FdY---dP~~D~~IPCkEagl~F~~GDILqI-v~qd  252 (542)
T KOG0609|consen  200 FKIIPSYRPPP-----------------------QQQVVFVRALFDY---DPKEDDLIPCKEAGLPFQRGDILQI-VSQD  252 (542)
T ss_pred             EEEcccccCCC-----------------------ceeeeeehhhcCc---CcccCCcccchhcCCcccccceeee-ccCC
Confidence            99988665111                       1135899999999   8889999999999998  9999999 9999


Q ss_pred             CCCCCCcCccccccCCCCccceeeeccChhhHHHHHHHhhcccccccccccccccchhccccCccCCCCCCccCcccccc
Q psy9827         354 DRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVF  433 (627)
Q Consensus       354 d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~~  433 (627)
                      |.    +||||+++++. ....+|||||+.++||+..+......   .......+++..||+++++++++.+.+-   ++
T Consensus       253 D~----nWWQA~~~~~~-~~~~AGLiPS~~~qerr~a~~~~~~~---~~~~~~~c~~l~kkkk~~~~~y~~~~~~---~~  321 (542)
T KOG0609|consen  253 DP----NWWQARRVGDP-FGGLAGLIPSKELQERRVACLRREVS---KEPEKTRCQRLSKKKKKKKSKYLGKHSA---VF  321 (542)
T ss_pred             Cc----chhhhhcccCc-cccccccccCHHHHHHHHHHHhhhcc---cCCcCchhcccchhhhhhhhhhhhhcch---hh
Confidence            97    99999999864 34799999999999998654332111   1112234444444444444555543221   01


Q ss_pred             cCCCCCccccchhhccCCCCCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCC---------------CCCCHHHHHH
Q psy9827         434 GDSISKFPAYERVSLRHPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKF---------------NFILWATIKD  495 (627)
Q Consensus       434 ~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~---------------~Fvs~e~f~~  495 (627)
                        ...++++||+|+++++..+|+|||+||.   .+.|+++|+..+|+.|++++|+               ||||+++|++
T Consensus       322 --d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~  399 (542)
T KOG0609|consen  322 --DQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEA  399 (542)
T ss_pred             --hccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhh
Confidence              1256789999999999889999999999   9999999999999999997775               7999999999


Q ss_pred             HHh------cccccCCcee-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC----------
Q psy9827         496 TAM------YQSSKEPGMY-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG----------  552 (627)
Q Consensus       496 ~i~------~~~~~~~~~Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~----------  552 (627)
                      +|.      ||++ ++|+|     +|+.++++||.||||+. ++| ++|+++|.||  ||||+||+++.+          
T Consensus       400 dI~~~~~lE~GEy-~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~Py--VIFI~pP~~~~~r~~r~~~~~~  476 (542)
T KOG0609|consen  400 DIRAGKFLEYGEY-EGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPY--VIFIAPPSLEELRALRKVAVMS  476 (542)
T ss_pred             hhhcCCceecCcc-hhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccce--EEEecCCCchhHHHHhhhcccc
Confidence            975      4554 79999     99999999999999999 999 9999999999  999999997644          


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECCCHHHHHHHHHHHHHhhCCCCeeEeCCCC
Q psy9827         553 ----KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKS  613 (627)
Q Consensus       553 ----~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~l~~~i~~~~~~~~Wvp~~~~  613 (627)
                          +..+++++++|.+.+++||+.|+||||.+|+|+|+|+||++|+.+|++++++|||||++|.
T Consensus       477 ~~~~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVPvsWv  541 (542)
T KOG0609|consen  477 TIVAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVPVSWV  541 (542)
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHHhccCCceeeeecc
Confidence                3467888999999999999999999999999999999999999999999999999999995

>KOG3580|consensus

Probab=100.00  E-value=8.5e-54  Score=444.84  Aligned_cols=519  Identities=30%  Similarity=0.437  Sum_probs=385.2

Q ss_pred             eEEEeccCC--ceeEEEEccCC--------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          52 RFITFQKEG--SVGIRLTGGNK--------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        52 r~v~l~k~g--~lG~~i~g~~~--------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      .+++|.|..  ||||.|.||.+        ..++|+.|.||+||+  | |+.||+|+.|||+++.+..|.-|+..|+.++
T Consensus        10 hTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrksg   87 (1027)
T KOG3580|consen   10 HTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSG   87 (1027)
T ss_pred             heeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhhc
Confidence            467888864  89999999853        358999999999997  6 9999999999999999999999999999999


Q ss_pred             CeeEEEEEeCCcccc----------------------------------------------------e------------
Q psy9827         121 DQIHLIVQNRRDEYE----------------------------------------------------H------------  136 (627)
Q Consensus       121 ~~V~L~v~r~~~~~~----------------------------------------------------~------------  136 (627)
                      ....++|.|.+...-                                                    .            
T Consensus        88 K~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer  167 (1027)
T KOG3580|consen   88 KVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSRER  167 (1027)
T ss_pred             cceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccccccccc
Confidence            999999886421100                                                    0            


Q ss_pred             ------------------------------------eee-----------------------cCCCCccccccCCeeecc
Q psy9827         137 ------------------------------------VVA-----------------------SQRGDSFHIKVNDRIMSA  157 (627)
Q Consensus       137 ------------------------------------~v~-----------------------~~~~~~~~l~~~D~i~~v  157 (627)
                                                          .++                       +-++.++.|+.||.|+.+
T Consensus       168 ~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkI  247 (1027)
T KOG3580|consen  168 DLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKI  247 (1027)
T ss_pred             ccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEE
Confidence                                                000                       001123478899999999


Q ss_pred             CCeecCcCChHHHHHHHhhcCCeEEEEEeecc------------------------------------------------
Q psy9827         158 NGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI------------------------------------------------  189 (627)
Q Consensus       158 ng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~------------------------------------------------  189 (627)
                      ||...++++...+..++..+...+.|+|.|..                                                
T Consensus       248 NGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~  327 (1027)
T KOG3580|consen  248 NGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSS  327 (1027)
T ss_pred             CcEeeccccchhHHHHHHhccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCc
Confidence            99999999999999999998888888887650                                                


Q ss_pred             --cC---CC--------------------------------------------CCC----------------------Cc
Q psy9827         190 --VL---PA--------------------------------------------SPE----------------------PQ  198 (627)
Q Consensus       190 --~~---p~--------------------------------------------~~~----------------------~~  198 (627)
                        ..   |.                                            .+.                      |.
T Consensus       328 s~h~p~~Ps~r~~~~~R~s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~  407 (1027)
T KOG3580|consen  328 SEHLPERPSSREDTPSRLSRMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPN  407 (1027)
T ss_pred             hhcCCCCCCccccchhhcccCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCC
Confidence              00   00                                            000                      00


Q ss_pred             cEEEEEeecCCCCCeeeee--CC--cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CC
Q psy9827         199 TLRVQLSKSRKKDDFGIIL--GN--KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KE  272 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~--~~--gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~  272 (627)
                      ..-|.+.|   +...|+.+  |+  ||||..|..|    ++|...||+.||.||.||.+++.++..+|++..|-..  +.
T Consensus       408 tk~VrF~K---GdSvGLRLAGGNDVGIFVaGvqeg----spA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGE  480 (1027)
T KOG3580|consen  408 TKMVRFKK---GDSVGLRLAGGNDVGIFVAGVQEG----SPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGE  480 (1027)
T ss_pred             ceeEEeec---CCeeeeEeccCCceeEEEeecccC----CchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCc
Confidence            11233333   34445444  43  8999999876    5666789999999999999999999999999998874  45


Q ss_pred             eEEEEEEeCCCCCCCcCCCCccccCcCCcCCCCCCCCCCCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccC
Q psy9827         273 KLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQ  352 (627)
Q Consensus       273 ~v~l~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~  352 (627)
                      .++|..++..+-..                 .+=.+.-.++||+|.+|.|-+        .+...++|++|++.+| +..
T Consensus       481 evtilaQ~k~Dvyr-----------------~iv~s~vGDSFyIRtHFE~Ek--------e~P~gL~FtrGeVFrv-vDT  534 (1027)
T KOG3580|consen  481 EVTILAQSKADVYR-----------------DIVASGVGDSFYIRTHFECEK--------ETPQGLAFTRGEVFRV-VDT  534 (1027)
T ss_pred             EEeehhhhhhHHHH-----------------HHHhccCCceeEEeeeeeecC--------CCCccccccccceeee-eec
Confidence            77776655332111                 000111247899999998822        2334567889999998 433


Q ss_pred             CCCCCCCcCccccccCCCCccceeeeccChhhHHHHHHHhhcccccccccccccccchhccccCccCCCCCCccCccccc
Q psy9827         353 LDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVV  432 (627)
Q Consensus       353 ~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~  432 (627)
                      .-.+ .---|-|-++|.+-.+.+.|+||+|.|+||++.++...   ...+.+.|..|||-|..+...++.+-+ ..+|+.
T Consensus       535 Ly~G-klG~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aq---r~~agGdRAdFWR~RGlRsg~Kknlrk-SREDLs  609 (1027)
T KOG3580|consen  535 LYDG-KLGNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQ---RDNAGGDRADFWRMRGLRSGVKKNLRK-SREDLS  609 (1027)
T ss_pred             ccCC-CCcceEEEeecccHHHHhcccCCCccHHHHHHHHHhhc---cccccchHHHHHHHhhhhhhhhhhhhh-hhhhhh
Confidence            2211 22357788898887789999999999999998876521   123445788999887533211111111 122322


Q ss_pred             ccCCCCCccccchhhccCCCCCceEEEeCccHHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCcee---h
Q psy9827         433 FGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMY---Q  509 (627)
Q Consensus       433 ~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~~Y---~  509 (627)
                      +......+|+||+|++.+.+|.|||||+||.++..+++|..+.|+.|..+..+.          -..|......+.   +
T Consensus       610 A~~vqtkfPaYERVvLREAgFkRPVvifGPiADiAmeKLa~E~PD~fqiAktep----------rdag~~~stg~irL~T  679 (1027)
T KOG3580|consen  610 AVVVQTKFPAYERVVLREAGFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEP----------RDAGSEKSTGVIRLNT  679 (1027)
T ss_pred             hceecccCCchhhhhhhhhcccCceEEeccHHHHHHHHHhhhCcchhhhhcccc----------ccCCcccccceEEehh
Confidence            111235789999999999999999999999999999999999999999754331          001222122333   9


Q ss_pred             HHhHHhCCCcEEEecC----Cce-eccccCCCCceeEEEEcCCC------cccC--CCCCHHHHHHHHHHHHHHHHHhcC
Q psy9827         510 GKDSMYQGKDSMYQGK----ESM-YQGKDSMYQGKDSMYQGKDS------MYQG--KDIKKEVKIKLFEQSQKLEKVWSH  576 (627)
Q Consensus       510 V~~v~~~gk~ciLdi~----~~l-~~~~~~~~P~~~vIFI~pps------l~~~--~~~~e~~~~~~~~~~~~~e~~~~~  576 (627)
                      |+.|+++.||+||||.    .+| +.   ++|||  |||+.|.|      |+++  ..+..+ .+++++++.|+.+.+.|
T Consensus       680 vrqiieqDKHALLDVTP~AvdrLNY~---QwypI--Vvff~PdSrqgvktmRqrL~P~Sr~S-sRkLy~~a~KL~K~~~H  753 (1027)
T KOG3580|consen  680 VRQIIEQDKHALLDVTPKAVDRLNYT---QWYPI--VVFFNPDSRQGVKTMRQRLAPTSRKS-SRKLYDQANKLKKTCAH  753 (1027)
T ss_pred             hHHHHhcccchhhccCHHHHhhhccc---eeeeE--EEEeCCcchHHHHHHHHHhCcccchh-HHHHHHHHHHHhhhchh
Confidence            9999999999999999    677 77   99999  99999999      4554  445566 89999999999999999


Q ss_pred             cccEEEE-CCCHHHHHHHHHHHHHhhCCCCeeEeCCCCccCccc-ccccccc
Q psy9827         577 VFTGTIT-LSGVDVWYRKTRELIEKQQSSPVWISETKSNLDIRE-LDIRESW  626 (627)
Q Consensus       577 ~fd~vi~-n~~l~~~~~~l~~~i~~~~~~~~Wvp~~~~~~~~~~-~~~~~~~  626 (627)
                      +|+++|. |..-|.||..|+++|.++|++++||.+.+++.+++| .|.|-++
T Consensus       754 LFTaTInLNs~nD~Wyg~LK~~iq~QQ~~~vWvsEgk~dG~~~Dn~ddr~sy  805 (1027)
T KOG3580|consen  754 LFTATINLNSANDSWYGSLKDTIQHQQGEAVWVSEGKMDGMDDDNPDDRMSY  805 (1027)
T ss_pred             heEeeeccCCCChhHHHHHHHHHHHhcCceeEeecccccCcccCCccccccc
Confidence            9999997 556799999999999999999999999999999988 8887665

>KOG0708|consensus

Probab=100.00  E-value=6.1e-41  Score=340.28  Aligned_cols=333  Identities=19%  Similarity=0.270  Sum_probs=247.0

Q ss_pred             EeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCCCCCcCCCCccccCcC--CcCCC-CCCCCCCCceeeCCCCCCCCC
Q psy9827         249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKEN--NYMDP-LSTNYSSQNLYVQPPTRGGPN  325 (627)
Q Consensus       249 ~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~yvra~~~y~~~  325 (627)
                      .+||.+..+.+++++...++.+++.+++++......   |..........+  .+++. .++......+||++.|+|   
T Consensus         2 ~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~---~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~---   75 (359)
T KOG0708|consen    2 SVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEE---YDKFELKIHDLEVLHVMDSMYQSRQEWRCLYVDALFDY---   75 (359)
T ss_pred             cccccccccchHHHHHHHhhcCCCceEEEEEechhh---hchhhcccCCcchHHHHHhhhccCCCCceeEeeccccc---
Confidence            578899999999999999999999999999875432   221111111111  11111 111112457999999999   


Q ss_pred             CCccCcCCCCCCCC--CCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHHHHhhcccccccccc
Q psy9827         326 NLLEDKSNLVPRAG--RSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSAS  403 (627)
Q Consensus       326 ~~~~d~~~~~~~~g--l~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~  403 (627)
                      ++..+  ++.+..+  +..|+|+|+ .+..|.    .||+++++...+.+...|+||++.+.+++..++++         
T Consensus        76 d~~~~--~~~~~~~~~~~~~~i~~~-~~~~~~----e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k---------  139 (359)
T KOG0708|consen   76 DLDRG--SPGYSRAQSFLYGQILHL-ISRSDD----EWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLK---------  139 (359)
T ss_pred             cccCC--CCCcchhhhhhhhhhhhc-cccccH----HHHHhhccCCCcccccccccccccccccccccccc---------
Confidence            77666  3444444  459999999 444444    79999999888888899999999888876543321         


Q ss_pred             cccccchhccccCccCCCCCCccCcc---cccccCCCCCccccchhhccCCCCCceEEEeCccHHHHHHHHhhhCCCCcc
Q psy9827         404 ESRGSFFKRRRNSHRRSKSLSKDHWD---DVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFS  480 (627)
Q Consensus       404 ~~~~~f~~~r~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~k~~l~~~Ll~~~p~~f~  480 (627)
                        +.+|.-+|+    ....+++++.+   +.........+.+||.|.++.+.+.|||+|+||.++.|.++|+.++|++|.
T Consensus       140 --~~~f~~~~~----~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~kF~  213 (359)
T KOG0708|consen  140 --RDSFNSGRD----FPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDKFK  213 (359)
T ss_pred             --cccccccCC----cccccCcccccccccccccccccccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhcccc
Confidence              122222111    11122333331   111112234578999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-CCHHHHHHHHhcccc-----cCCcee-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCC
Q psy9827         481 APRKFNF-ILWATIKDTAMYQSS-----KEPGMY-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKD  547 (627)
Q Consensus       481 ~~~~~~F-vs~e~f~~~i~~~~~-----~~~~~Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~pp  547 (627)
                      +|+++.- .++++|+..++.+.|     +.+++|     +|++++++|+||||||+ .+. .++..+||||  +|||+|.
T Consensus       214 ~C~~~t~~~~~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPI--vIfIr~k  291 (359)
T KOG0708|consen  214 SCLPETLRPSREEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPI--VIFIRVK  291 (359)
T ss_pred             ccchhhhcccHHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceece--EEEEEec
Confidence            9999852 247899998765433     257888     99999999999999999 333 2222499999  9999999


Q ss_pred             CcccC----CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECCCHHHHHHHHHHHHHhhCCCCeeEeCC
Q psy9827         548 SMYQG----KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISET  611 (627)
Q Consensus       548 sl~~~----~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~l~~~i~~~~~~~~Wvp~~  611 (627)
                      |.+++    .+.+.++++++++++.++|++|..+|+.+|.-++++++|.+++.+|.++|.+++|||+.
T Consensus       292 s~~~i~e~~~~~t~~~ake~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWVp~~  359 (359)
T KOG0708|consen  292 SKKQIKERNLKITGEQAKELLERARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWVPAK  359 (359)
T ss_pred             hHHHHHHHhcccchHHHHHHHHHHHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEeeeCC
Confidence            96544    44556669999999999999999999999999999999999999999999999999974

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.92  E-value=1.1e-24  Score=203.26  Aligned_cols=146  Identities=17%  Similarity=0.154  Sum_probs=120.6

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCccc------CCCC-------CCCCHHHHHHHHhccccc-----CCcee---
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA------PRKF-------NFILWATIKDTAMYQSSK-----EPGMY---  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~------~~~~-------~Fvs~e~f~~~i~~~~~~-----~~~~Y---  508 (627)
                      ..+++||+|||   |+||.++|++++.-.|+.      |||+       ||||+++|+++|+.++++     .||||   
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~   82 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS   82 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence            46899999999   999999999998223332      4443       799999999999877654     49999   


Q ss_pred             --hHHhHHhCCCcEEEecC--Cce-eccccCCCCceeEEEEcCCCcccC-----CCC--CHHHHHHHHHHHHHHHHHhcC
Q psy9827         509 --QGKDSMYQGKDSMYQGK--ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDI--KKEVKIKLFEQSQKLEKVWSH  576 (627)
Q Consensus       509 --~V~~v~~~gk~ciLdi~--~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~--~e~~~~~~~~~~~~~e~~~~~  576 (627)
                        .|+.++++|++||||||  +++ ++   +.+|-++.|||.|||++++     +|.  +++..+++++++. .|..+..
T Consensus        83 ~~~ve~~~~~G~~vildId~qGa~qvk---~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~-~Ei~~~~  158 (191)
T COG0194          83 REPVEQALAEGKDVILDIDVQGALQVK---KKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAK-KEISHAD  158 (191)
T ss_pred             HHHHHHHHhcCCeEEEEEehHHHHHHH---HhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHH-HHHHHHH
Confidence              99999999999999999  777 66   7788667999999997765     444  4555777777774 4777888


Q ss_pred             cccEEEECCCHHHHHHHHHHHHHhhC
Q psy9827         577 VFTGTITLSGVDVWYRKTRELIEKQQ  602 (627)
Q Consensus       577 ~fd~vi~n~~l~~~~~~l~~~i~~~~  602 (627)
                      .|||||+|||+++|+.+|+.+|..+.
T Consensus       159 ~fdyvivNdd~e~a~~~l~~ii~aer  184 (191)
T COG0194         159 EFDYVIVNDDLEKALEELKSIILAER  184 (191)
T ss_pred             hCCEEEECccHHHHHHHHHHHHHHHH
Confidence            89999999999999999999998774

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.90  E-value=2.7e-24  Score=208.01  Aligned_cols=146  Identities=20%  Similarity=0.272  Sum_probs=120.9

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CCC-------CCCCHHHHHHHHhcccc-----cCCcee-
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RKF-------NFILWATIKDTAMYQSS-----KEPGMY-  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~~-------~Fvs~e~f~~~i~~~~~-----~~~~~Y-  508 (627)
                      .+|||||+||+   |++|.++|++++|+.|..+        ++.       ||||+++|+++++.|+|     +.|++| 
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence            36999999999   9999999999999999762        221       79999999999876554     368899 


Q ss_pred             ----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CCCCHHHHHHHHHHHHHHHHHhcCc
Q psy9827         509 ----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDIKKEVKIKLFEQSQKLEKVWSHV  577 (627)
Q Consensus       509 ----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~~e~~~~~~~~~~~~~e~~~~~~  577 (627)
                          +|+.++++|||||||++ ..+ .++...++|+  +|||+|||.+.+     ++..++ .+++.+++.++|.++.++
T Consensus        81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~--~IfI~~~s~~~l~~~l~~r~~~~-~~~i~~r~~~~~~~~~~~  157 (183)
T PF00625_consen   81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPI--VIFIKPPSPEVLKRRLRRRGDES-EEEIEERLERAEKEFEHY  157 (183)
T ss_dssp             EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEE--EEEEEESSHHHHHHHHHTTTHCH-HHHHHHHHHHHHHHHGGG
T ss_pred             hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCce--EEEEEccchHHHHHHHhcccccc-HHHHHHHHHHHHHHHhHh
Confidence                89999999999999999 555 4455589999  999999995544     444333 677888888889999998


Q ss_pred             --ccEEEECCCHHHHHHHHHHHHHhh
Q psy9827         578 --FTGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       578 --fd~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                        ||+||+|+++++|+.+|+++|+++
T Consensus       158 ~~fd~vi~n~~le~~~~~l~~ii~~~  183 (183)
T PF00625_consen  158 NEFDYVIVNDDLEEAVKELKEIIEQE  183 (183)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEECcCHHHHHHHHHHHHHhC
Confidence              999999999999999999999864

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>smart00072 GuKc Guanylate kinase homologues

Probab=99.89  E-value=6.6e-23  Score=198.45  Aligned_cols=146  Identities=20%  Similarity=0.269  Sum_probs=121.0

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCcccCCC---------------CCCCCHHHHHHHHhccccc-----CCcee-
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRK---------------FNFILWATIKDTAMYQSSK-----EPGMY-  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~---------------~~Fvs~e~f~~~i~~~~~~-----~~~~Y-  508 (627)
                      +.|||||+||+   |++|.++|++++|+.|..+++               ++|+|+++|+++++.|++.     .||+| 
T Consensus         1 ~~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG   80 (184)
T smart00072        1 DRRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG   80 (184)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence            36899999999   999999999999988877432               1799999999999877643     58899 


Q ss_pred             ----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHHHhc
Q psy9827         509 ----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEKVWS  575 (627)
Q Consensus       509 ----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~~~~  575 (627)
                          +|++++++|++||||++ +.+ .++...++|+  +|||.|||.+.+     +|  .++++++++++++.+++..+ 
T Consensus        81 t~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~--vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~-  157 (184)
T smart00072       81 TSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPI--VIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY-  157 (184)
T ss_pred             cCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcE--EEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-
Confidence                79999999999999999 555 4444477889  999999995543     33  34566888888887766655 


Q ss_pred             CcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827         576 HVFTGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       576 ~~fd~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                      ++||++|+|+|+++|+++|+++|.++
T Consensus       158 ~~fd~~I~n~~l~~~~~~l~~~i~~~  183 (184)
T smart00072      158 HLFDYVIVNDDLEDAYEELKEILEAE  183 (184)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHHhc
Confidence            89999999999999999999999875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>KOG3209|consensus

Probab=99.89  E-value=1.5e-21  Score=208.56  Aligned_cols=225  Identities=26%  Similarity=0.451  Sum_probs=181.5

Q ss_pred             EEecc-CCceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCeeEEEE
Q psy9827          54 ITFQK-EGSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL--SLQDQIHLIV  127 (627)
Q Consensus        54 v~l~k-~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~--~~g~~V~L~v  127 (627)
                      |.|.+ ..||||.|-||++  ..|+|..|.+.++|++.| |+.||.|+.|+|++|.+.+|.+++.++.  +....|.|+|
T Consensus       653 V~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtV  732 (984)
T KOG3209|consen  653 VFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTV  732 (984)
T ss_pred             EEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEE
Confidence            44544 4699999999875  569999999999999999 9999999999999999999999998876  4467899999


Q ss_pred             EeCC----------------------------cccceee---------------ecCCCC-ccccccCCeeeccCCeecC
Q psy9827         128 QNRR----------------------------DEYEHVV---------------ASQRGD-SFHIKVNDRIMSANGLSLE  163 (627)
Q Consensus       128 ~r~~----------------------------~~~~~~v---------------~~~~~~-~~~l~~~D~i~~vng~~l~  163 (627)
                      +|.-                            +.+..++               .+.+++ =+.|++||+|++|||.++.
T Consensus       733 RRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~  812 (984)
T KOG3209|consen  733 RRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSIL  812 (984)
T ss_pred             eeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeee
Confidence            8731                            0111111               111111 2588999999999999999


Q ss_pred             cCChHHHHHHHhhcCCeEEEEEeecccC---------------------------CC-----------------------
Q psy9827         164 NVEYGTAVQVLRDSGSTVTLKVRRRIVL---------------------------PA-----------------------  193 (627)
Q Consensus       164 ~~~~~~~~~~l~~sg~~v~l~v~r~~~~---------------------------p~-----------------------  193 (627)
                      +++|...+++++++|.+|+|.+..+...                           |.                       
T Consensus       813 ~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r  892 (984)
T KOG3209|consen  813 NLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDR  892 (984)
T ss_pred             ccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceecccc
Confidence            9999999999999999999998654100                           00                       


Q ss_pred             -CCCCccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         194 -SPEPQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       194 -~~~~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                       +.....++|+|.++..+.||+|++|    -++||-++...   |.|-++|.+++||+|++|||.+..+|+|..|+.+|+
T Consensus       893 ~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeD---GPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk  969 (984)
T KOG3209|consen  893 MSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAED---GPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIK  969 (984)
T ss_pred             ccccCCeeEEEeeccccccceEeecccccccceEEEEeccC---CCccccCceeecceEEEecCcccCCCcHHHHHHHHH
Confidence             0011246899999988888888887    38999999866   678889999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeC
Q psy9827         269 SSKEKLSLTIRRE  281 (627)
Q Consensus       269 ~~~~~v~l~V~r~  281 (627)
                      +.+..+.|.+.|+
T Consensus       970 ~gg~~vll~Lr~g  982 (984)
T KOG3209|consen  970 QGGRRVLLLLRRG  982 (984)
T ss_pred             hCCeEEEEEeccC
Confidence            9888887777664

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.87  E-value=5.9e-22  Score=191.45  Aligned_cols=145  Identities=13%  Similarity=0.090  Sum_probs=117.2

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCCC-------CCCCHHHHHHHHhccccc-----CCcee--
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRKF-------NFILWATIKDTAMYQSSK-----EPGMY--  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~~-------~Fvs~e~f~~~i~~~~~~-----~~~~Y--  508 (627)
                      ..++|||+||+   |++|+++|++.+|+.+.+       |+++       ||||+++|+.+++.|+|.     .||+|  
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt   82 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT   82 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence            46899999999   999999999999987554       2222       799999999998776643     59999  


Q ss_pred             ---hHHhHHhCCCcEEEecC-Cce-eccccCCCCce-eEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHHHhc
Q psy9827         509 ---QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGK-DSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEKVWS  575 (627)
Q Consensus       509 ---~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~-~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~~~~  575 (627)
                         +|++++++||+||||++ +.+ .++  ..+|-. ++|||.|||++.+     +|  .++++++++++++ ..|.++.
T Consensus        83 ~~~~i~~~~~~g~~~i~d~~~~g~~~l~--~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~-~~e~~~~  159 (186)
T PRK14737         83 PKAFIEDAFKEGRSAIMDIDVQGAKIIK--EKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENG-IIELDEA  159 (186)
T ss_pred             cHHHHHHHHHcCCeEEEEcCHHHHHHHH--HhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHhhh
Confidence               79999999999999999 555 333  456621 2999999995433     33  3566688888875 4788899


Q ss_pred             CcccEEEECCCHHHHHHHHHHHHHh
Q psy9827         576 HVFTGTITLSGVDVWYRKTRELIEK  600 (627)
Q Consensus       576 ~~fd~vi~n~~l~~~~~~l~~~i~~  600 (627)
                      ++||+||+|+|+++++.+|+++|..
T Consensus       160 ~~~D~vI~N~dle~a~~ql~~ii~~  184 (186)
T PRK14737        160 NEFDYKIINDDLEDAIADLEAIICG  184 (186)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHhc
Confidence            9999999999999999999999864

>PLN02772 guanylate kinase

Probab=99.87  E-value=8.2e-22  Score=206.22  Aligned_cols=157  Identities=17%  Similarity=0.187  Sum_probs=124.6

Q ss_pred             cchhhccC---CC-CCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCC---------------CCCCHHHHHHHHhcc
Q psy9827         443 YERVSLRH---PG-FIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKF---------------NFILWATIKDTAMYQ  500 (627)
Q Consensus       443 Ye~V~~~~---~~-~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~---------------~Fvs~e~f~~~i~~~  500 (627)
                      =|+|++++   ++ .+|||||+|||   |++|+++|++++|..|.+++++               ||+++++|+.+++.|
T Consensus       120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g  199 (398)
T PLN02772        120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG  199 (398)
T ss_pred             cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC
Confidence            45677776   33 78899999999   9999999999999888753221               799999999999877


Q ss_pred             ccc-----CCcee-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CC--CCHHHHH
Q psy9827         501 SSK-----EPGMY-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KD--IKKEVKI  561 (627)
Q Consensus       501 ~~~-----~~~~Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~--~~e~~~~  561 (627)
                      +|.     .||+|     +|+.++++|++||||+| +.. ..+...+.|+  +|||.|||++++     .|  .++++++
T Consensus       200 ~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v--~IFI~PPSlEeLe~RL~~RGteseE~I~  277 (398)
T PLN02772        200 KFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAI--FIFICPPSMEELEKRLRARGTETEEQIQ  277 (398)
T ss_pred             ccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeE--EEEEeCCCHHHHHHHHHhcCCCCHHHHH
Confidence            654     59999     99999999999999999 444 3333345677  999999997654     23  3566678


Q ss_pred             HHHHHHHH-HHH-HhcCcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827         562 KLFEQSQK-LEK-VWSHVFTGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       562 ~~~~~~~~-~e~-~~~~~fd~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                      ++++++.+ ++. .+.++||++|+|||+++|+++|+++|...
T Consensus       278 kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~~  319 (398)
T PLN02772        278 KRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLKKLLGLD  319 (398)
T ss_pred             HHHHHHHHHHhhccccCCCCEEEECCCHHHHHHHHHHHHhhc
Confidence            88888743 542 34689999999999999999999999754

>PRK10139 serine endoprotease; Provisional

Probab=99.81  E-value=3.8e-19  Score=194.29  Aligned_cols=223  Identities=22%  Similarity=0.262  Sum_probs=159.6

Q ss_pred             cccccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEEE----ec-----cCCceeEEEEcc
Q psy9827           7 RFITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGG   69 (627)
Q Consensus         7 ~~~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~   69 (627)
                      .|..|.|++ +++++++       .|++|||| +++.+.+++..|++|++|......    |.     +++.||+++...
T Consensus       198 ~~~~~iqtda~in~GnSGGpl~n~~G~vIGi~-~~~~~~~~~~~gigfaIP~~~~~~v~~~l~~~g~v~r~~LGv~~~~l  276 (455)
T PRK10139        198 GLENFIQTDASINRGNSGGALLNLNGELIGIN-TAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM  276 (455)
T ss_pred             CcceEEEECCccCCCCCcceEECCCCeEEEEE-EEEEcCCCCccceEEEEEhHHHHHHHHHHhhcCcccccceeEEEEEC
Confidence            367788887 9999988       48999999 999887788899999999753321    22     245899988764


Q ss_pred             C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .           ..|++|..|.++|||+++||++||+|++|||.++.++.+..........++.+.|++.|++......+
T Consensus       277 ~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v  356 (455)
T PRK10139        277 SADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEV  356 (455)
T ss_pred             CHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            2           35899999999999999999999999999999999987766555444678899999998776554444


Q ss_pred             ecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeC
Q psy9827         139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILG  218 (627)
Q Consensus       139 ~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~  218 (627)
                      .........                 ...         .+    +       .     +....+.|......     ...
T Consensus       357 ~~~~~~~~~-----------------~~~---------~~----~-------~-----~~~~g~~l~~~~~~-----~~~  389 (455)
T PRK10139        357 TLDTSTSSS-----------------ASA---------EM----I-------T-----PALQGATLSDGQLK-----DGT  389 (455)
T ss_pred             EECCCCCcc-----------------ccc---------cc----c-------c-----ccccccEecccccc-----cCC
Confidence            321100000                 000         00    0       0     00000011110000     012


Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +++++..++++..+.+.|.|.|++.
T Consensus       390 ~Gv~V~~V~~~----spA~~aGL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~  448 (455)
T PRK10139        390 KGIKIDEVVKG----SPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNE  448 (455)
T ss_pred             CceEEEEeCCC----ChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence            47899999876    46677899999999999999999  9999999999877889999999764

>KOG3209|consensus

Probab=99.80  E-value=5.6e-18  Score=181.50  Aligned_cols=227  Identities=26%  Similarity=0.382  Sum_probs=177.3

Q ss_pred             EEeccC-CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEE
Q psy9827          54 ITFQKE-GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHL  125 (627)
Q Consensus        54 v~l~k~-g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L  125 (627)
                      ..|+|+ .||||+|.||+    +..+-|.+|.+++||++.| |.+||.|+.|||..+.+.||.+|+.+++..  +..|.|
T Consensus       348 t~LvKg~~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L  427 (984)
T KOG3209|consen  348 TKLVKGYMGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDL  427 (984)
T ss_pred             EEEeecccccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeE
Confidence            456665 49999999996    3468899999999999999 999999999999999999999999999865  999999


Q ss_pred             EEEeCCccc-----------c----------------e------------------------eeecCCCC----------
Q psy9827         126 IVQNRRDEY-----------E----------------H------------------------VVASQRGD----------  144 (627)
Q Consensus       126 ~v~r~~~~~-----------~----------------~------------------------~v~~~~~~----------  144 (627)
                      +++|.-+..           .                .                        ++++..+.          
T Consensus       428 ~lcRgyelp~dp~dp~~sp~~~iv~~~P~~~~~~~gp~v~~~~sss~~~a~~~~~~el~ti~i~kgpegfgftiADsPtg  507 (984)
T KOG3209|consen  428 VLCRGYELPFDPEDPVGSPRVAIVPSWPDSSTDKGGPMVTGRPSSSTHLAQHDGPPELTTIKIVKGPEGFGFTIADSPTG  507 (984)
T ss_pred             EEecCccCCCCCcccCCCCccccccCCCCCCCCCCCCeeecCCCCccccccCCCCcccEEEeeecCCCCCCceeccCCCC
Confidence            999851100           0                0                        00110000          


Q ss_pred             -----------ccccccCCeeeccCCeecCcCChHHHHHHHhhc--CCeEEEEEeecc----------------------
Q psy9827         145 -----------SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRRRI----------------------  189 (627)
Q Consensus       145 -----------~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~s--g~~v~l~v~r~~----------------------  189 (627)
                                 --.+..||.|+.+|+..+.+++|.+++++++++  |..+.|.+.|.-                      
T Consensus       508 qrvK~ilDp~~c~gl~eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~ktpk~~~r~~~~~s~~~  587 (984)
T KOG3209|consen  508 QRVKQILDPQDCPGLSEGDLIVEINERNVRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKTPKAADRKENQGSNQM  587 (984)
T ss_pred             CceeeecCcccCCCCCCCCeEEecccccccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcCcchhhhccCCCCccc
Confidence                       126778999999999999999999999999986  567888888750                      


Q ss_pred             --cCC---------C---C--C-----------------------------C--------CccEEEEEeecCCCCCeeee
Q psy9827         190 --VLP---------A---S--P-----------------------------E--------PQTLRVQLSKSRKKDDFGII  216 (627)
Q Consensus       190 --~~p---------~---~--~-----------------------------~--------~~~~~V~L~k~~~~~~~gi~  216 (627)
                        ..|         .   +  +                             .        ...+.|.|.+...+.||.+-
T Consensus       588 s~sap~i~q~~Pfpp~~rs~~pd~t~~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L~rkesGFGFRiL  667 (984)
T KOG3209|consen  588 SSSAPLIPQKLPFPPTSRSEEPDNTRNTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFLRRKESGFGFRIL  667 (984)
T ss_pred             cccccccCCCCCCCCcccccCCcccccccccCCChHHHhhhcccchhccCCCCCccccCCccceeEEEEeeccccceEEe
Confidence              000         0   0  0                             0        02356888877665555555


Q ss_pred             eC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827         217 LG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  283 (627)
Q Consensus       217 ~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~  283 (627)
                      +|    .+|+|..|.++   |+|..+|.|+.||.|+.|+|++|.|++|.+++.+|..+  .+.|.|+|.|...
T Consensus       668 GG~ep~qpi~iG~Iv~l---GaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~  737 (984)
T KOG3209|consen  668 GGDEPGQPIYIGAIVPL---GAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVR  737 (984)
T ss_pred             cCCCCCCeeEEeeeeec---ccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeee
Confidence            55    47999999988   68889999999999999999999999999999999874  4689999988543

>PRK10942 serine endoprotease; Provisional

Probab=99.80  E-value=8.7e-19  Score=192.34  Aligned_cols=220  Identities=23%  Similarity=0.310  Sum_probs=158.4

Q ss_pred             cccccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEE----Ee-----ccCCceeEEEEcc
Q psy9827           7 RFITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFI----TF-----QKEGSVGIRLTGG   69 (627)
Q Consensus         7 ~~~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v----~l-----~k~g~lG~~i~g~   69 (627)
                      .|..|.|++ +++++++       .|++|||| +++.+.++...+++|++|.....    .+     ..+|+||+.++..
T Consensus       219 ~~~~~iqtda~i~~GnSGGpL~n~~GeviGI~-t~~~~~~g~~~g~gfaIP~~~~~~v~~~l~~~g~v~rg~lGv~~~~l  297 (473)
T PRK10942        219 NYENFIQTDAAINRGNSGGALVNLNGELIGIN-TAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL  297 (473)
T ss_pred             cccceEEeccccCCCCCcCccCCCCCeEEEEE-EEEEcCCCCcccEEEEEEHHHHHHHHHHHHhccccccceeeeEeeec
Confidence            577888887 8888877       48999999 99988888888999999964321    11     2346899988753


Q ss_pred             C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      +           ..|++|..|.++|||+++||++||+|++|||..+.++.+..........++.+.|++.|++......+
T Consensus       298 ~~~~a~~~~l~~~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v  377 (473)
T PRK10942        298 NSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNV  377 (473)
T ss_pred             CHHHHHhcCCCCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEE
Confidence            1           35899999999999999999999999999999999987766555555678899999998776544433


Q ss_pred             ecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeC
Q psy9827         139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILG  218 (627)
Q Consensus       139 ~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~  218 (627)
                      ..........  .                        .....+.+..                ..+...        ...
T Consensus       378 ~l~~~~~~~~--~------------------------~~~~~lGl~g----------------~~l~~~--------~~~  407 (473)
T PRK10942        378 ELQQSSQNQV--D------------------------SSNIFNGIEG----------------AELSNK--------GGD  407 (473)
T ss_pred             EeCcCccccc--c------------------------ccccccccee----------------eecccc--------cCC
Confidence            2211000000  0                        0000000000                000000        001


Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +.+++.++++..+..+.|+|.|++.
T Consensus       408 ~gvvV~~V~~~----S~A~~aGL~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~  466 (473)
T PRK10942        408 KGVVVDNVKPG----TPAAQIGLKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDS  466 (473)
T ss_pred             CCeEEEEeCCC----ChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence            37899999876    46667899999999999999999  8999999999877889999999764

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.80  E-value=6e-19  Score=192.79  Aligned_cols=228  Identities=23%  Similarity=0.316  Sum_probs=161.0

Q ss_pred             CcccccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEEE----e-----ccCCceeEEEEc
Q psy9827           6 PRFITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----F-----QKEGSVGIRLTG   68 (627)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l-----~k~g~lG~~i~g   68 (627)
                      ..|..+.+++ +++++++       .|++|||| +++.+.+++..+++|++|......    +     ...++||+++..
T Consensus       164 ~~~~~~i~tda~i~~GnSGGpl~n~~G~viGI~-~~~~~~~g~~~g~~faiP~~~~~~~~~~l~~~g~~~~~~lGi~~~~  242 (428)
T TIGR02037       164 GDYENFIQTDAAINPGNSGGPLVNLRGEVIGIN-TAIYSPSGGNVGIGFAIPSNMAKNVVDQLIEGGKVQRGWLGVTIQE  242 (428)
T ss_pred             CCccceEEECCCCCCCCCCCceECCCCeEEEEE-eEEEcCCCCccceEEEEEhHHHHHHHHHHHhcCcCcCCcCceEeec
Confidence            4566677776 8888877       48899999 998887777788899998543321    1     123689999887


Q ss_pred             cC-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827          69 GN-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV  137 (627)
Q Consensus        69 ~~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~  137 (627)
                      ..           ..|++|..|.++|||+++||++||+|++|||..+.++.+..........++.+.|++.|++......
T Consensus       243 ~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~  322 (428)
T TIGR02037       243 VTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTIT  322 (428)
T ss_pred             CCHHHHHHcCCCCCCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            53           3689999999999999999999999999999999988776665555577899999999987665544


Q ss_pred             eecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeee
Q psy9827         138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL  217 (627)
Q Consensus       138 v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~  217 (627)
                      +........   .........|..+..++...                                        ...|++..
T Consensus       323 v~l~~~~~~---~~~~~~~~lGi~~~~l~~~~----------------------------------------~~~~~l~~  359 (428)
T TIGR02037       323 VTLGASPEE---QASSSNPFLGLTVANLSPEI----------------------------------------RKELRLKG  359 (428)
T ss_pred             EEECcCCCc---cccccccccceEEecCCHHH----------------------------------------HHHcCCCc
Confidence            432211100   00000001111111111110                                        01122222


Q ss_pred             C-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         218 G-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       218 ~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      . .|++|..|.++    ++|..+||++||+|++|||+++.  +.+++.+++++  .++.+.|.|.|++.
T Consensus       360 ~~~Gv~V~~V~~~----SpA~~aGL~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~  422 (428)
T TIGR02037       360 DVKGVVVTKVVSG----SPAARAGLQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA  422 (428)
T ss_pred             CcCceEEEEeCCC----CHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            2 47899999876    46667889999999999999999  89999999986  36789999999764

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG0707|consensus

Probab=99.71  E-value=5.3e-17  Score=156.69  Aligned_cols=150  Identities=17%  Similarity=0.150  Sum_probs=117.1

Q ss_pred             CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CC-------CCCCCHHHHHHHHhcccccC-----Cce
Q psy9827         451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RK-------FNFILWATIKDTAMYQSSKE-----PGM  507 (627)
Q Consensus       451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~-------~~Fvs~e~f~~~i~~~~~~~-----~~~  507 (627)
                      |..-+||||+||+   |.++.++|++++|..|+..        +.       +||+++++|+.|++.+++++     ||+
T Consensus        34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~  113 (231)
T KOG0707|consen   34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNK  113 (231)
T ss_pred             CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhccc
Confidence            4556999999999   9999999999999988762        11       17999999999998887654     999


Q ss_pred             e-----hHHhHHhCCCcEEEecC--CceeccccCCCCceeEEEEcCCCcccC-----CCCCHH--HHHHHHHHHHHHHHH
Q psy9827         508 Y-----QGKDSMYQGKDSMYQGK--ESMYQGKDSMYQGKDSMYQGKDSMYQG-----KDIKKE--VKIKLFEQSQKLEKV  573 (627)
Q Consensus       508 Y-----~V~~v~~~gk~ciLdi~--~~l~~~~~~~~P~~~vIFI~ppsl~~~-----~~~~e~--~~~~~~~~~~~~e~~  573 (627)
                      |     +|+++...||.|+|||+  +...+|...+.++  +||++|||...+     .|.+|.  ++.+.+. +.+.|.+
T Consensus       114 yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i--~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~-sa~~e~~  190 (231)
T KOG0707|consen  114 YGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAI--YIFIKPPSIKILEERLRARGTETEESLLKRLK-SAEEEFE  190 (231)
T ss_pred             CCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceE--EEEecCCcchhHHHHhhccCcchHHHHHHHHH-hhhhhhc
Confidence            9     88999999999999999  3445555578889  999999994333     445443  3444444 3345655


Q ss_pred             hcC---cccEEEEC-CCHHHHHHHHHHHHHhhCC
Q psy9827         574 WSH---VFTGTITL-SGVDVWYRKTRELIEKQQS  603 (627)
Q Consensus       574 ~~~---~fd~vi~n-~~l~~~~~~l~~~i~~~~~  603 (627)
                      +..   .||++|+| ++++++|.+++.++..+..
T Consensus       191 ~~~~~g~~d~~~~ns~~lee~~kel~~~~~~~~~  224 (231)
T KOG0707|consen  191 ILENSGSFDLVIVNSDRLEEAYKELEIFISSDDK  224 (231)
T ss_pred             cccCCccccceecCCCchhhhhhhhhhhhhHHHH
Confidence            554   49999999 9999999999998876543

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.55  E-value=4.3e-14  Score=139.25  Aligned_cols=147  Identities=14%  Similarity=0.118  Sum_probs=106.8

Q ss_pred             CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CC-------CCCCCHHHHHHHHhccccc-----CCce
Q psy9827         451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RK-------FNFILWATIKDTAMYQSSK-----EPGM  507 (627)
Q Consensus       451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~-------~~Fvs~e~f~~~i~~~~~~-----~~~~  507 (627)
                      |+..+.|||+||+   |+||.++|.+..+ .|..+        ++       +||+++++|+.++..|.+.     .||+
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            5678999999999   9999999987654 34331        11       1699999999998766543     5899


Q ss_pred             e-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcc---cC--CCCC--HHHHHHHHHHHHHHHHH
Q psy9827         508 Y-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMY---QG--KDIK--KEVKIKLFEQSQKLEKV  573 (627)
Q Consensus       508 Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~---~~--~~~~--e~~~~~~~~~~~~~e~~  573 (627)
                      |     +|+.++++|++||++++ +.+ .++  +++|..++||+.|||.+   ++  +|..  ++++.+++..+. .|..
T Consensus        89 YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~--~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~-~e~~  165 (206)
T PRK14738         89 YGVPKAPVRQALASGRDVIVKVDVQGAASIK--RLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAP-LELE  165 (206)
T ss_pred             ecCCHHHHHHHHHcCCcEEEEcCHHHHHHHH--HhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHh
Confidence            9     89999999999999999 544 332  56785448999999954   22  3433  333444444432 2233


Q ss_pred             hcCcccEEEEC--CCHHHHHHHHHHHHHhh
Q psy9827         574 WSHVFTGTITL--SGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       574 ~~~~fd~vi~n--~~l~~~~~~l~~~i~~~  601 (627)
                      ..+.||++++|  +++++++++|.++|...
T Consensus       166 ~~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        166 QLPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             cccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            34568999998  48999999999999875

>KOG3580|consensus

Probab=99.42  E-value=6.4e-13  Score=140.47  Aligned_cols=140  Identities=39%  Similarity=0.619  Sum_probs=123.5

Q ss_pred             CccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecc--cC------C-----------------------
Q psy9827         144 DSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI--VL------P-----------------------  192 (627)
Q Consensus       144 ~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~--~~------p-----------------------  192 (627)
                      ..+.|+.+|+++.|||++++++.|..+++.|+.++....++++|+.  ..      |                       
T Consensus        53 AeG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg  132 (1027)
T KOG3580|consen   53 AEGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSG  132 (1027)
T ss_pred             cccccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccceeeccccCCCCCCCCccccccchhccCccccccc
Confidence            3568999999999999999999999999999999999999998860  00      0                       


Q ss_pred             ----------------------------------------------------C--------CCCCccEEEEEeecCCCCC
Q psy9827         193 ----------------------------------------------------A--------SPEPQTLRVQLSKSRKKDD  212 (627)
Q Consensus       193 ----------------------------------------------------~--------~~~~~~~~V~L~k~~~~~~  212 (627)
                                                                          .        ...+.+++|.|+|......
T Consensus       133 ~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEE  212 (1027)
T KOG3580|consen  133 YSERSRLNSHGGRSRSWEDSPERGRPHERARSRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEE  212 (1027)
T ss_pred             ccccccccccCCcccccccccccCCccccccccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchh
Confidence                                                                0        0112358999999999999


Q ss_pred             eeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCCCC
Q psy9827         213 FGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  286 (627)
Q Consensus       213 ~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~~~  286 (627)
                      ||+.+++.|||++|...   +.|++.++|+.||+||.|||+...+|++.++..+|.++.+.+.|+|+|+.....
T Consensus       213 yGlrLgSqIFvKeit~~---gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtL  283 (1027)
T KOG3580|consen  213 YGLRLGSQIFVKEITRT---GLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTL  283 (1027)
T ss_pred             hcccccchhhhhhhccc---chhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCcee
Confidence            99999999999999865   789999999999999999999999999999999999999999999999887654

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.42  E-value=2.1e-12  Score=124.28  Aligned_cols=142  Identities=16%  Similarity=0.157  Sum_probs=106.4

Q ss_pred             ceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCC-------CCCCCHHHHHHHHhcccc-----cCCcee----
Q psy9827         455 RPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRK-------FNFILWATIKDTAMYQSS-----KEPGMY----  508 (627)
Q Consensus       455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y----  508 (627)
                      ++++|+||+   |+||.+.|...+|..+..       |..       ++|++.++|.+++..+++     +.+++|    
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            689999999   999999999987764432       111       268999999998765543     357888    


Q ss_pred             -hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----C--CCCHHHHHHHHHHHHHHHHHhcCcc
Q psy9827         509 -QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----K--DIKKEVKIKLFEQSQKLEKVWSHVF  578 (627)
Q Consensus       509 -~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~--~~~e~~~~~~~~~~~~~e~~~~~~f  578 (627)
                       .|+.++++|++||+|++ +.. ..+.....|+  .||+.||+.+.+     +  ..++++++++++... .+.++.++|
T Consensus        82 ~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~--~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~-~~~~~~~~~  158 (180)
T TIGR03263        82 SPVEEALAAGKDVLLEIDVQGARQVKKKFPDAV--SIFILPPSLEELERRLRKRGTDSEEVIERRLAKAK-KEIAHADEF  158 (180)
T ss_pred             HHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcE--EEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHhccccC
Confidence             78999999999999999 443 2222233567  899999984322     2  334555777776654 466788899


Q ss_pred             cEEEECCCHHHHHHHHHHHHH
Q psy9827         579 TGTITLSGVDVWYRKTRELIE  599 (627)
Q Consensus       579 d~vi~n~~l~~~~~~l~~~i~  599 (627)
                      |++|+|+|+++++++|++++.
T Consensus       159 d~~i~n~~~~~~~~~l~~~~~  179 (180)
T TIGR03263       159 DYVIVNDDLEKAVEELKSIIL  179 (180)
T ss_pred             cEEEECCCHHHHHHHHHHHHh
Confidence            999999999999999999875

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.39  E-value=9.3e-13  Score=121.08  Aligned_cols=107  Identities=15%  Similarity=0.177  Sum_probs=88.4

Q ss_pred             eEEEeCcc---HHHHHHHHhhhCCCCcccCCC---------------CCCCCHHHHHHHHhccccc-----CCcee----
Q psy9827         456 PVVLFGPV---ADLARDKLLKDFPDKFSAPRK---------------FNFILWATIKDTAMYQSSK-----EPGMY----  508 (627)
Q Consensus       456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~---------------~~Fvs~e~f~~~i~~~~~~-----~~~~Y----  508 (627)
                      ||+|+||+   |++|.++|.+.+|..|...++               ++|++.++|.+++..++++     .+|+|    
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            68999999   999999999988876654211               2699999999998776543     48888    


Q ss_pred             -hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC
Q psy9827         509 -QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS  585 (627)
Q Consensus       509 -~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~  585 (627)
                       +|++++++|++||||++ +.+ .++.....|+  +|||.||                               |+||+|+
T Consensus        81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~--~I~i~~~-------------------------------~~~~~~~  127 (137)
T cd00071          81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAV--SIFILPP-------------------------------DYVIVND  127 (137)
T ss_pred             HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeE--EEEEECC-------------------------------CeEEeCC
Confidence             79999999999999999 555 4444466678  9999998                               9999999


Q ss_pred             CHHHHHHHHH
Q psy9827         586 GVDVWYRKTR  595 (627)
Q Consensus       586 ~l~~~~~~l~  595 (627)
                      ++++++++|+
T Consensus       128 ~~~~~~~~~~  137 (137)
T cd00071         128 DLEKAYEELK  137 (137)
T ss_pred             CHHHHHHhhC
Confidence            9999999873

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.36  E-value=6.8e-12  Score=137.85  Aligned_cols=150  Identities=16%  Similarity=0.188  Sum_probs=108.5

Q ss_pred             CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCccccccCC
Q psy9827          73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVND  152 (627)
Q Consensus        73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D  152 (627)
                      ..+|..|.++|||++|||++||+|++|||+++.++.+..........++++.+++.|+++.....++.......      
T Consensus       127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~------  200 (449)
T PRK10779        127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWA------  200 (449)
T ss_pred             CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccc------
Confidence            35799999999999999999999999999999999888777666677889999999987654443322110000      


Q ss_pred             eeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeC---CcEEEEEeccC
Q psy9827         153 RIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHR  229 (627)
Q Consensus       153 ~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g  229 (627)
                               .......                                        ....+|+...   .+.+|..|.++
T Consensus       201 ---------~~~~~~~----------------------------------------~~~~lGl~~~~~~~~~vV~~V~~~  231 (449)
T PRK10779        201 ---------FEPDKQD----------------------------------------PVSSLGIRPRGPQIEPVLAEVQPN  231 (449)
T ss_pred             ---------cCccccc----------------------------------------hhhcccccccCCCcCcEEEeeCCC
Confidence                     0000000                                        0001111111   13678999776


Q ss_pred             CCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827         230 LDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP  283 (627)
Q Consensus       230 ~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~  283 (627)
                          ++|..+||++||+|++|||+++.  +.+++...++. .++.+.+.|.|++.
T Consensus       232 ----SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~  280 (449)
T PRK10779        232 ----SAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGS  280 (449)
T ss_pred             ----CHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCE
Confidence                56777899999999999999998  89999999887 45689999998764

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.31  E-value=1.2e-11  Score=102.83  Aligned_cols=75  Identities=41%  Similarity=0.792  Sum_probs=67.8

Q ss_pred             EEecc--CCceeEEEEccCC---CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          54 ITFQK--EGSVGIRLTGGNK---VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        54 v~l~k--~g~lG~~i~g~~~---~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      +.+.|  .++|||++.++.+   .+++|+.|.++|||+++||++||+|++|||.++.++++.+++.+++.++..|+|+|+
T Consensus         2 v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~   81 (81)
T PF00595_consen    2 VTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ   81 (81)
T ss_dssp             EEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred             EEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence            45555  3589999999866   489999999999999999999999999999999999999999999998889999875

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3605|consensus

Probab=99.27  E-value=1.2e-11  Score=132.61  Aligned_cols=158  Identities=15%  Similarity=0.277  Sum_probs=124.0

Q ss_pred             eEEEeccC-C-ceeEEEEccCCC----CEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCe
Q psy9827          52 RFITFQKE-G-SVGIRLTGGNKV----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQ  122 (627)
Q Consensus        52 r~v~l~k~-g-~lG~~i~g~~~~----gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~  122 (627)
                      +.|.+.|. | .||+.|+.....    -++|.+...++||+++| |-.||+|++|||.++.+++.......++.  ....
T Consensus       647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~  726 (829)
T KOG3605|consen  647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA  726 (829)
T ss_pred             ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence            55666553 4 799999886442    36788999999999999 99999999999999999998887777773  3456


Q ss_pred             eEEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEE
Q psy9827         123 IHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRV  202 (627)
Q Consensus       123 V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V  202 (627)
                      |.|+|.+.+                                                                  ...+|
T Consensus       727 VkltiV~cp------------------------------------------------------------------PV~~V  740 (829)
T KOG3605|consen  727 VKLNIVSCP------------------------------------------------------------------PVTTV  740 (829)
T ss_pred             EEEEEecCC------------------------------------------------------------------CceEE
Confidence            666666322                                                                  23344


Q ss_pred             EEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy9827         203 QLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  280 (627)
Q Consensus       203 ~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r  280 (627)
                      .+.+......+||.+.+||+++-+.     |..|..||+++|-+|++|||++|-...|+-++++|..+-+.|.++-.+
T Consensus       741 ~I~RPd~kyQLGFSVQNGiICSLlR-----GGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTMP  813 (829)
T KOG3605|consen  741 LIRRPDLRYQLGFSVQNGIICSLLR-----GGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTMP  813 (829)
T ss_pred             EeecccchhhccceeeCcEeehhhc-----ccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhcch
Confidence            4444455667888888998877654     347788999999999999999999999999999999988888776543

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.26  E-value=5.9e-11  Score=116.79  Aligned_cols=145  Identities=16%  Similarity=0.145  Sum_probs=107.2

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCC-------CCCCCHHHHHHHHhcccc-----cCCcee--
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRK-------FNFILWATIKDTAMYQSS-----KEPGMY--  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y--  508 (627)
                      ..+.|+|+||+   |++|.+.|...+|..+..       |..       .+|++.++|..++..+.+     +.+++|  
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            35789999999   999999999887732221       111       269999999998765543     247777  


Q ss_pred             ---hHHhHHhCCCcEEEecC-Cce--eccccCCCCceeEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHHHhc
Q psy9827         509 ---QGKDSMYQGKDSMYQGK-ESM--YQGKDSMYQGKDSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEKVWS  575 (627)
Q Consensus       509 ---~V~~v~~~gk~ciLdi~-~~l--~~~~~~~~P~~~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~~~~  575 (627)
                         +|+.++++|+.||+|++ +..  .. +....++  +||+.||+.+.+     .|  .+++.+++++.... .+.++.
T Consensus        84 ~~~~i~~~l~~g~~vi~dl~~~g~~~l~-~~~~~~~--~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~  159 (205)
T PRK00300         84 PRSPVEEALAAGKDVLLEIDWQGARQVK-KKMPDAV--SIFILPPSLEELERRLRGRGTDSEEVIARRLAKAR-EEIAHA  159 (205)
T ss_pred             cHHHHHHHHHcCCeEEEeCCHHHHHHHH-HhCCCcE--EEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhH
Confidence               79999999999999999 333  33 1122457  899999984332     23  45565666666553 456677


Q ss_pred             CcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827         576 HVFTGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       576 ~~fd~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                      +.||++|+|+++++++.+|..++...
T Consensus       160 ~~~d~vi~n~~~e~~~~~l~~il~~~  185 (205)
T PRK00300        160 SEYDYVIVNDDLDTALEELKAIIRAE  185 (205)
T ss_pred             HhCCEEEECCCHHHHHHHHHHHHHHH
Confidence            88999999999999999999999886

>KOG3812|consensus

Probab=99.25  E-value=5.4e-11  Score=118.70  Aligned_cols=258  Identities=16%  Similarity=0.149  Sum_probs=145.6

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCC--CCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHHH
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRS--RNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELAT  390 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~--~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~  390 (627)
                      .|-||+..+|   +..-|+..|.+.-+++  ..|+|||. .+...    .||-.+-+.+.   ...|+|||..+.|..+.
T Consensus        58 AFAV~tnv~Y---~gslde~~Pv~g~aisF~~kDFlHIk-eKynn----DWWIGRlVkeg---~e~gFiPsp~rLen~r~  126 (475)
T KOG3812|consen   58 AFAVRTNVSY---DGSLDEDSPVQGHAISFEAKDFLHIK-EKYNN----DWWIGRLVKEG---CEIGFIPSPVRLENIRL  126 (475)
T ss_pred             eEEEEecccc---CCccCCCCCCCCceeeeccccceeeh-hhccc----chhHHHHhhcC---CccccccchHHHHHHHh
Confidence            3447888888   5555666777776665  89999993 33322    59999877643   58999999999887765


Q ss_pred             HhhcccccccccccccccchhccccCccCCCCCCccCcccccccCCCCCccccchhhccCCCCCceEEEeCcc------H
Q psy9827         391 AQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPV------A  464 (627)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~------k  464 (627)
                      .+.++++..     +..+...- -.+.|.++..+.+..|..    -.+.+++|..|     ...|||||+||+      -
T Consensus       127 ~~e~~~~~~-----~n~ssl~~-vg~r~stpp~ta~~kd~~----~~E~~pPYdVV-----PSmRPvVLvGPsLkgyevT  191 (475)
T KOG3812|consen  127 QQEQSSKSS-----GNSSSLGD-VGSRRSTPPSTADQKDKS----ITEHVPPYDVV-----PSMRPVVLVGPSLKGYEVT  191 (475)
T ss_pred             hhhhhcccC-----CCccccCC-cccCCCCCCChhhhhhhh----hcccCCccccC-----CCCCceEEecCccccccHH
Confidence            443322211     11111100 011111121111222210    02456888866     357999999999      3


Q ss_pred             HHHHHHHhhhCCCCcccCCCCCCCCHH-HH-HHHH-hcc------ccc--CCcee----hHHhHH---hCCCcEEEecC-
Q psy9827         465 DLARDKLLKDFPDKFSAPRKFNFILWA-TI-KDTA-MYQ------SSK--EPGMY----QGKDSM---YQGKDSMYQGK-  525 (627)
Q Consensus       465 ~~l~~~Ll~~~p~~f~~~~~~~Fvs~e-~f-~~~i-~~~------~~~--~~~~Y----~V~~v~---~~gk~ciLdi~-  525 (627)
                      +.+.+.|.+.-..+|.--..-..|+.+ .. +..+ ..+      +.-  ...+-    +|+.|.   .+=.-++||.+ 
T Consensus       192 dmmqkAlfd~lkhrF~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~RsslaevqsEiErIfelarsLqLvvlDadt  271 (475)
T KOG3812|consen  192 DMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADT  271 (475)
T ss_pred             HHHHHHHHHHHHHhcCCceeEEEEeechhhhhhhhccCccceeeeeeccchhhHHHHHHHHHHHHHHHhhceEEEecCCc
Confidence            344444555444556531111111110 00 0000 000      000  00011    455443   34566788888 


Q ss_pred             ----Cce-eccccCCCCceeEEEEcCCCcccC----CCCCHHHHHH---HHHHHHHHHHHhcCcccEEEECCCHHHHHHH
Q psy9827         526 ----ESM-YQGKDSMYQGKDSMYQGKDSMYQG----KDIKKEVKIK---LFEQSQKLEKVWSHVFTGTITLSGVDVWYRK  593 (627)
Q Consensus       526 ----~~l-~~~~~~~~P~~~vIFI~ppsl~~~----~~~~e~~~~~---~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~  593 (627)
                          ..| ..   .+.||  +|||+..|-+-|    +...+++.+.   .+-.+.++++--...||.||.-+.|++||+.
T Consensus       272 InhPaql~kt---sLaPI--~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqLedAceh  346 (475)
T KOG3812|consen  272 INHPAQLAKT---SLAPI--IVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDACEH  346 (475)
T ss_pred             CCCHHHhccC---CCcce--EEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccHHHHHHH
Confidence                344 45   79999  999999994332    2112223333   3445567888888899999998899999999


Q ss_pred             HHHHHHhh
Q psy9827         594 TRELIEKQ  601 (627)
Q Consensus       594 l~~~i~~~  601 (627)
                      |.+.++..
T Consensus       347 la~yLEaY  354 (475)
T KOG3812|consen  347 LAEYLEAY  354 (475)
T ss_pred             HHHHHHHH
Confidence            99999865

>TIGR00054 RIP metalloprotease RseP

Probab=99.19  E-value=1.8e-10  Score=125.45  Aligned_cols=134  Identities=19%  Similarity=0.272  Sum_probs=100.3

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCccccccC
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVN  151 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~  151 (627)
                      .+.+|..|.++|||++|||++||+|++|||..+.++.+.........  .++.+++.|++......+.            
T Consensus       128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~~ia~~~--~~v~~~I~r~g~~~~l~v~------------  193 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIADIA--GEPMVEILAERENWTFEVM------------  193 (420)
T ss_pred             CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhc--ccceEEEEEecCceEeccc------------
Confidence            68899999999999999999999999999999998877665444444  6788888875533211000            


Q ss_pred             CeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCC
Q psy9827         152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLD  231 (627)
Q Consensus       152 D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~  231 (627)
                                                     +.+                   ....        ...+++|..|.++  
T Consensus       194 -------------------------------l~~-------------------~~~~--------~~~g~vV~~V~~~--  213 (420)
T TIGR00054       194 -------------------------------KEL-------------------IPRG--------PKIEPVLSDVTPN--  213 (420)
T ss_pred             -------------------------------ccc-------------------eecC--------CCcCcEEEEECCC--
Confidence                                           000                   0000        0024678899776  


Q ss_pred             CCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827         232 NNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP  283 (627)
Q Consensus       232 ~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~  283 (627)
                        ++|+.+||++||+|++|||+++.  +.+++...++. .+..+.+.|.|++.
T Consensus       214 --SpA~~aGL~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~  262 (420)
T TIGR00054       214 --SPAEKAGLKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGE  262 (420)
T ss_pred             --CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCE
Confidence              56677899999999999999999  89999999987 45579999999764

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.13  E-value=2e-10  Score=95.84  Aligned_cols=78  Identities=31%  Similarity=0.437  Sum_probs=63.6

Q ss_pred             CceeEEEEccCC-CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827          60 GSVGIRLTGGNK-VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV  137 (627)
Q Consensus        60 g~lG~~i~g~~~-~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~  137 (627)
                      |+||+++..... .|++|..|.++|||+++||++||+|++|||.++.+..+..........+++|+|++.|++......
T Consensus         1 ~~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~   79 (82)
T PF13180_consen    1 GGLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDGEELTVE   79 (82)
T ss_dssp             -E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEE
T ss_pred             CEECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEE
Confidence            468999988754 699999999999999999999999999999999877666655554588999999999987665543

...

>PRK10898 serine endoprotease; Provisional

Probab=99.06  E-value=6e-10  Score=118.49  Aligned_cols=128  Identities=23%  Similarity=0.208  Sum_probs=95.0

Q ss_pred             ccccCC-CCCCCCC-------CCceeeeecccccCCCC---CccccccCCCCceEEE----ec-----cCCceeEEEEcc
Q psy9827          10 TFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSP---DLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGG   69 (627)
Q Consensus        10 ~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~---d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~   69 (627)
                      .+.|++ +++++++       +|++|||| +++...++   .+.+++|++|......    +.     .+++||+.+...
T Consensus       187 ~~iqtda~i~~GnSGGPl~n~~G~vvGI~-~~~~~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~G~~~~~~lGi~~~~~  265 (353)
T PRK10898        187 NFLQTDASINHGNSGGALVNSLGELMGIN-TLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDGRVIRGYIGIGGREI  265 (353)
T ss_pred             ceEEeccccCCCCCcceEECCCCeEEEEE-EEEecccCCCCcccceEEEEchHHHHHHHHHHhhcCcccccccceEEEEC
Confidence            456665 9999987       48889999 77655432   2467889998664321    21     235799987653


Q ss_pred             C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .           ..|++|..|.++|||+++||++||+|++|||.++.++.+..........++.+.|++.|++..+...+
T Consensus       266 ~~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  345 (353)
T PRK10898        266 APLHAQGGGIDQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQV  345 (353)
T ss_pred             CHHHHHhcCCCCCCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            1           36899999999999999999999999999999998876655444444678899999998776554433

>KOG3550|consensus

Probab=99.06  E-value=3.8e-10  Score=100.28  Aligned_cols=83  Identities=29%  Similarity=0.578  Sum_probs=75.8

Q ss_pred             CceEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      -||.+.|.|+ .||||.+.||.  .++|||+.|.||+.|++.| |+.||++++|||+++.+-.|+.++.+|+..-..|.|
T Consensus        90 hprvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvkl  169 (207)
T KOG3550|consen   90 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKL  169 (207)
T ss_pred             CCceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEE
Confidence            6799999887 59999999985  4689999999999999987 999999999999999999999999999999899999


Q ss_pred             EEEeCCc
Q psy9827         126 IVQNRRD  132 (627)
Q Consensus       126 ~v~r~~~  132 (627)
                      +|+.-+.
T Consensus       170 vvrytpk  176 (207)
T KOG3550|consen  170 VVRYTPK  176 (207)
T ss_pred             EEecChH
Confidence            9986544

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=99.03  E-value=1.2e-09  Score=116.15  Aligned_cols=129  Identities=23%  Similarity=0.232  Sum_probs=95.5

Q ss_pred             cccccCC-CCCCCCC-------CCceeeeecccccCCC--CCccccccCCCCceEE----Eec-----cCCceeEEEEcc
Q psy9827           9 ITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGS--PDLFSIFFVEPDPRFI----TFQ-----KEGSVGIRLTGG   69 (627)
Q Consensus         9 ~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~--~d~~~~~~~~~~~r~v----~l~-----k~g~lG~~i~g~   69 (627)
                      ..+.|++ +++++++       .|++|||| +++...+  ...++++|++|.....    .+.     ..++||+.+...
T Consensus       186 ~~~iqtda~i~~GnSGGpl~n~~G~vIGI~-~~~~~~~~~~~~~g~~faIP~~~~~~vl~~l~~~g~~~r~~lGv~~~~~  264 (351)
T TIGR02038       186 QNFIQTDAAINAGNSGGALINTNGELVGIN-TASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIRGYIGVSGEDI  264 (351)
T ss_pred             ceEEEECCccCCCCCcceEECCCCeEEEEE-eeeecccCCCCccceEEEecHHHHHHHHHHHhhcCcccceEeeeEEEEC
Confidence            4556665 8999977       58999999 7765443  3457888999955321    121     235799987653


Q ss_pred             C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .           ..|++|..|.++|||+++||++||+|++|||.++.++.+......-...++.+.|++.|++......+
T Consensus       265 ~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v  344 (351)
T TIGR02038       265 NSVVAQGLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLRQGKQLELPV  344 (351)
T ss_pred             CHHHHHhcCCCccccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            2           25899999999999999999999999999999999886655444434678899999998775544433

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.98  E-value=3.5e-09  Score=85.22  Aligned_cols=67  Identities=40%  Similarity=0.668  Sum_probs=60.0

Q ss_pred             ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeeEEEE
Q psy9827          61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL-QDQIHLIV  127 (627)
Q Consensus        61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-g~~V~L~v  127 (627)
                      ++||.+.+..+.+++|..|.++|||+++||++||+|++|||.++.++++.++...++.. +..++|++
T Consensus         2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            68999998766689999999999999999999999999999999999998988888854 57888876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3550|consensus

Probab=98.96  E-value=2.2e-09  Score=95.50  Aligned_cols=82  Identities=21%  Similarity=0.363  Sum_probs=74.8

Q ss_pred             CccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ..+.-|.|.|...+.||++-+|    ++|||++|.||   |.+.+.+||+.||.+++|||.++.+-.|+.++.+|+.+.+
T Consensus        89 ahprvvelpktdeglgfnvmggkeqnspiyisriipg---gvadrhgglkrgdqllsvngvsvege~hekavellkaa~g  165 (207)
T KOG3550|consen   89 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPG---GVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG  165 (207)
T ss_pred             CCCceeecCccccccceeeccCcccCCceEEEeecCC---ccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC
Confidence            4567788999988889988886    59999999998   7899999999999999999999999999999999999999


Q ss_pred             eEEEEEEeC
Q psy9827         273 KLSLTIRRE  281 (627)
Q Consensus       273 ~v~l~V~r~  281 (627)
                      .+.|+|.+-
T Consensus       166 svklvvryt  174 (207)
T KOG3550|consen  166 SVKLVVRYT  174 (207)
T ss_pred             cEEEEEecC
Confidence            999999774

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.95  E-value=7.9e-09  Score=85.75  Aligned_cols=76  Identities=46%  Similarity=0.804  Sum_probs=65.0

Q ss_pred             eEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          52 RFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        52 r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      +.+.+.+.  ++|||.+.+...  .+++|..|.++|||+++||++||+|++|||.++.+++..++...+......++|++
T Consensus         2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            34566664  689999998753  68999999999999999999999999999999999999999988887666777765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.92  E-value=1.6e-08  Score=84.26  Aligned_cols=78  Identities=38%  Similarity=0.643  Sum_probs=67.2

Q ss_pred             EEEeccC-CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          53 FITFQKE-GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        53 ~v~l~k~-g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      .+.+.+. +.|||.+.....  .+++|..|.++|||+++||++||+|++|||..+.++++.+....+...+..+.|++.|
T Consensus         4 ~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r   83 (85)
T smart00228        4 LVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLR   83 (85)
T ss_pred             EEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence            3455554 589999987654  6899999999999999999999999999999999999999888888777788888876


Q ss_pred             C
Q psy9827         130 R  130 (627)
Q Consensus       130 ~  130 (627)
                      .
T Consensus        84 ~   84 (85)
T smart00228       84 G   84 (85)
T ss_pred             C
Confidence            4

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.82  E-value=8.9e-09  Score=85.54  Aligned_cols=73  Identities=32%  Similarity=0.488  Sum_probs=59.2

Q ss_pred             EEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         202 VQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       202 V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      |++.|. ...+|||.+.       .+++|.+|.++    ++|..+||++||+|++|||+++.++++++++.+++.+.+.+
T Consensus         2 v~l~k~-~~~~lG~~l~~~~~~~~~~~~V~~v~~~----~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v   76 (81)
T PF00595_consen    2 VTLEKS-GNGPLGFTLRGGSDNDEKGVFVSSVVPG----SPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPV   76 (81)
T ss_dssp             EEEEES-TTSBSSEEEEEESTSSSEEEEEEEECTT----SHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEE
T ss_pred             EEEEeC-CCCCcCEEEEecCCCCcCCEEEEEEeCC----ChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcE
Confidence            566774 4455555552       28999999987    34444459999999999999999999999999999999999


Q ss_pred             EEEEE
Q psy9827         275 SLTIR  279 (627)
Q Consensus       275 ~l~V~  279 (627)
                      +|+|+
T Consensus        77 ~L~V~   81 (81)
T PF00595_consen   77 TLTVQ   81 (81)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99884

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.5e-08  Score=108.02  Aligned_cols=131  Identities=26%  Similarity=0.301  Sum_probs=105.0

Q ss_pred             ccccccCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCceEEE----ec-----cCCceeEEEEcc-
Q psy9827           8 FITFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGG-   69 (627)
Q Consensus         8 ~~~~~~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~-   69 (627)
                      |..++|++ ++++.++.       |++|||| +++...+++..+++|++|......    +.     ..+.+|+.+... 
T Consensus       181 ~~~~IqtdAain~gnsGgpl~n~~g~~iGin-t~~~~~~~~~~gigfaiP~~~~~~v~~~l~~~G~v~~~~lgv~~~~~~  259 (347)
T COG0265         181 YVNFIQTDAAINPGNSGGPLVNIDGEVVGIN-TAIIAPSGGSSGIGFAIPVNLVAPVLDELISKGKVVRGYLGVIGEPLT  259 (347)
T ss_pred             ccchhhcccccCCCCCCCceEcCCCcEEEEE-EEEecCCCCcceeEEEecHHHHHHHHHHHHHcCCccccccceEEEEcc
Confidence            77888888 99999984       7889999 999998888888999999653321    11     134677665432 


Q ss_pred             --------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827          70 --------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        70 --------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~  139 (627)
                              ...|++|..|.++|||+++|++.||.|+++||..+.+.............+..+.+.+.|+++.....+.
T Consensus       260 ~~~~~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~  337 (347)
T COG0265         260 ADIALGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKERELAVT  337 (347)
T ss_pred             cccccCCCCCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEE
Confidence                    1457999999999999999999999999999999999888777776667899999999998666554443

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.76  E-value=7.9e-08  Score=80.42  Aligned_cols=70  Identities=29%  Similarity=0.574  Sum_probs=60.2

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEEEEEeC
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQNR  130 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L~v~r~  130 (627)
                      ++||+.+... ..+++|..|.++|||+++||++||+|++|||.++.++++.+....+. ..+..+.|++.|.
T Consensus         2 ~~lG~~~~~~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYD-DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEc-CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            4688888753 46899999999999999999999999999999999997777776665 3578899999876

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3553|consensus

Probab=98.75  E-value=1.2e-08  Score=84.57  Aligned_cols=58  Identities=41%  Similarity=0.657  Sum_probs=53.4

Q ss_pred             ceeEEEEccC------------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy9827          61 SVGIRLTGGN------------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS  118 (627)
Q Consensus        61 ~lG~~i~g~~------------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~  118 (627)
                      .+||.|.||-            +.||||++|.+||||+.|||+.+|.|++|||.++.-+||.+|+..+++
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK  105 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence            5899999872            569999999999999999999999999999999999999999887775

>KOG3551|consensus

Probab=98.71  E-value=2.7e-08  Score=101.35  Aligned_cols=82  Identities=34%  Similarity=0.510  Sum_probs=73.9

Q ss_pred             eEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          52 RFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        52 r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      |.|.+.|.  |||||+|-||.  .-+|+|+.|.+|-.|++++ |..||.|++|||.++.+.+|++++..|++.|..|.|.
T Consensus        86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~le  165 (506)
T KOG3551|consen   86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLE  165 (506)
T ss_pred             ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeee
Confidence            66666663  69999999985  4689999999999999999 9999999999999999999999999999999999999


Q ss_pred             EEeCCcc
Q psy9827         127 VQNRRDE  133 (627)
Q Consensus       127 v~r~~~~  133 (627)
                      |+..++.
T Consensus       166 vKy~REv  172 (506)
T KOG3551|consen  166 VKYMREV  172 (506)
T ss_pred             eeeehhc
Confidence            9876654

>KOG3549|consensus

Probab=98.66  E-value=5.3e-08  Score=97.92  Aligned_cols=81  Identities=27%  Similarity=0.529  Sum_probs=73.8

Q ss_pred             CCceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      ..-|+|++.+.  ||||++|-||.+  -+++|+.|..+..|+..| |-+||-|++|||+.+..++|++++.+|+..|+.|
T Consensus        53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV  132 (505)
T KOG3549|consen   53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV  132 (505)
T ss_pred             CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence            35678888764  899999999865  478999999999999999 9999999999999999999999999999999999


Q ss_pred             EEEEEe
Q psy9827         124 HLIVQN  129 (627)
Q Consensus       124 ~L~v~r  129 (627)
                      +|+|..
T Consensus       133 tlTV~~  138 (505)
T KOG3549|consen  133 TLTVKH  138 (505)
T ss_pred             EEEeHh
Confidence            999975

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.62  E-value=1e-07  Score=102.91  Aligned_cols=96  Identities=25%  Similarity=0.403  Sum_probs=83.9

Q ss_pred             CCCCCccccccCCCCceEEEeccC---CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHH
Q psy9827          36 PGSPDLFSIFFVEPDPRFITFQKE---GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA  112 (627)
Q Consensus        36 ~~~~d~~~~~~~~~~~r~v~l~k~---g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~  112 (627)
                      +..+|||+.|++....+.+...-.   +++|+.+...+..++.|.++.+|+||+++||++||+|+.|||.++.+++-.++
T Consensus        73 s~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~a  152 (406)
T COG0793          73 SSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEA  152 (406)
T ss_pred             HhcCCCcccccCHHHHHHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHH
Confidence            778899999999888876654433   48999998876578999999999999999999999999999999999998888


Q ss_pred             HHHHh-cCCCeeEEEEEeCC
Q psy9827         113 VLFLL-SLQDQIHLIVQNRR  131 (627)
Q Consensus       113 ~~~l~-~~g~~V~L~v~r~~  131 (627)
                      +..++ ..|..|+|++.|..
T Consensus       153 v~~irG~~Gt~V~L~i~r~~  172 (406)
T COG0793         153 VKLIRGKPGTKVTLTILRAG  172 (406)
T ss_pred             HHHhCCCCCCeEEEEEEEcC
Confidence            88777 78899999999963

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.59  E-value=1.9e-07  Score=77.24  Aligned_cols=65  Identities=22%  Similarity=0.250  Sum_probs=51.5

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccc
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE  135 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~  135 (627)
                      ..|++|..|.++|||+++||++||+|++|||.++.++.+..........+..+.+++.|++....
T Consensus         9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~   73 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPSTTKLT   73 (79)
T ss_pred             CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEECCEEEE
Confidence            35899999999999999999999999999999999775543332222357899999998765443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.58  E-value=3.8e-07  Score=88.36  Aligned_cols=143  Identities=10%  Similarity=-0.021  Sum_probs=91.7

Q ss_pred             ceEEEeCcc---HHHHHHHHhhhCC-CCccc----CCC-------CCCCCHHHHHHHHhcccc-----cCCcee----hH
Q psy9827         455 RPVVLFGPV---ADLARDKLLKDFP-DKFSA----PRK-------FNFILWATIKDTAMYQSS-----KEPGMY----QG  510 (627)
Q Consensus       455 RpvVl~Gp~---k~~l~~~Ll~~~p-~~f~~----~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y----~V  510 (627)
                      ..++|+||+   |+||.+.|....+ ..+..    .++       .+|++.++|..+++.+.+     +.||+|    ++
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~   82 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI   82 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence            579999999   9999999977643 32222    111       267899999999877654     248999    99


Q ss_pred             HhHHhCCCcEEEecC-Cce--eccccCC-CCceeEEEEcCCC--cccC----CCCCHHHHHHHHHHHHHHHHHhcCcccE
Q psy9827         511 KDSMYQGKDSMYQGK-ESM--YQGKDSM-YQGKDSMYQGKDS--MYQG----KDIKKEVKIKLFEQSQKLEKVWSHVFTG  580 (627)
Q Consensus       511 ~~v~~~gk~ciLdi~-~~l--~~~~~~~-~P~~~vIFI~pps--l~~~----~~~~e~~~~~~~~~~~~~e~~~~~~fd~  580 (627)
                      ++.+++|++||++.. ...  .++  .+ .+. .+||+.+|-  +.++    .+.+++++++++++..    .| ..+|+
T Consensus        83 ~~~l~~g~~VI~~G~~~~~~~~~~--~~~~~~-~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~----~~-~~ad~  154 (186)
T PRK10078         83 DLWLHAGFDVLVNGSRAHLPQARA--RYQSAL-LPVCLQVSPEILRQRLENRGRENASEINARLARAA----RY-QPQDC  154 (186)
T ss_pred             HHHHhCCCEEEEeChHHHHHHHHH--HcCCCE-EEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhh----hh-ccCCE
Confidence            999999999998766 221  121  12 233 145555443  2222    3334454555554432    12 24786


Q ss_pred             EEECC--CHHHHHHHHHHHHHhhCCCC
Q psy9827         581 TITLS--GVDVWYRKTRELIEKQQSSP  605 (627)
Q Consensus       581 vi~n~--~l~~~~~~l~~~i~~~~~~~  605 (627)
                      +++|+  ++++++++|..++...|.+.
T Consensus       155 ~vi~~~~s~ee~~~~i~~~l~~~~~~~  181 (186)
T PRK10078        155 HTLNNDGSLRQSVDTLLTLLHLSQKEK  181 (186)
T ss_pred             EEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence            65555  59999999999998777653

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.53  E-value=3.6e-07  Score=77.17  Aligned_cols=61  Identities=38%  Similarity=0.575  Sum_probs=50.8

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      .|++|..|.++|||+++||++||+|++|||..+.++.+..........+..+.+.+.|++.
T Consensus        24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r~g~   84 (90)
T cd00987          24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGGK   84 (90)
T ss_pred             CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            4799999999999999999999999999999999876655444333457899999987653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.52  E-value=1.7e-07  Score=101.17  Aligned_cols=102  Identities=24%  Similarity=0.355  Sum_probs=76.8

Q ss_pred             ccccCCCCCccccccCCCCceEEEec-c--CCceeEEEEccCC-----CCEEEEEeCCCChhhhcCCCCCCEEEEECCEe
Q psy9827          32 TAVQPGSPDLFSIFFVEPDPRFITFQ-K--EGSVGIRLTGGNK-----VGIFVTAVQPGSPASLQGLQPGDKILKVNDMD  103 (627)
Q Consensus        32 ~ai~~~~~d~~~~~~~~~~~r~v~l~-k--~g~lG~~i~g~~~-----~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~  103 (627)
                      ..+....+|+|+.|+...+....... .  ..++|+.+.....     .+++|..|.+||||+++||++||+|++|||.+
T Consensus        54 ~~ml~~L~D~hs~y~~~~~~~~~~~~~~~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~  133 (389)
T PLN00049         54 RKMLATLDDPFTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTS  133 (389)
T ss_pred             HHHHhhCCCCcccCcCHHHHHHHHHhccCCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEE
Confidence            44457778999988765544322111 1  2478888764321     37999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHh-cCCCeeEEEEEeCCcc
Q psy9827         104 MKGITREEAVLFLL-SLQDQIHLIVQNRRDE  133 (627)
Q Consensus       104 v~~~~~~~~~~~l~-~~g~~V~L~v~r~~~~  133 (627)
                      +.+++..++...+. ..+..|.|++.|.+..
T Consensus       134 v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~  164 (389)
T PLN00049        134 TEGLSLYEAADRLQGPEGSSVELTLRRGPET  164 (389)
T ss_pred             CCCCCHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            99988777766665 4678999999986644

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.50  E-value=7.5e-07  Score=73.57  Aligned_cols=70  Identities=24%  Similarity=0.277  Sum_probs=53.9

Q ss_pred             ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccc
Q psy9827          61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY  134 (627)
Q Consensus        61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~  134 (627)
                      .+|+.+... +.+++|..|.++|||+++||++||+|++|||.++.++.  .+.. ....++.+.+++.|++...
T Consensus         2 ~~G~~~~~~-~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~--~~l~-~~~~~~~v~l~v~r~g~~~   71 (80)
T cd00990           2 YLGLTLDKE-EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQ--DRLK-EYQAGDPVELTVFRDDRLI   71 (80)
T ss_pred             cccEEEEcc-CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHHH--HHHH-hcCCCCEEEEEEEECCEEE
Confidence            478887644 45799999999999999999999999999999997622  1211 1246778999998866543

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.44  E-value=1.1e-06  Score=72.33  Aligned_cols=70  Identities=26%  Similarity=0.383  Sum_probs=52.9

Q ss_pred             ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEEEEEeCCcc
Q psy9827          61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQNRRDE  133 (627)
Q Consensus        61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L~v~r~~~~  133 (627)
                      ++||..... ...++|..|.++|+|+++||++||+|++|||.++.++.+..  ..+. ..+..+.+++.|++..
T Consensus         2 ~~~~~~g~~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~--~~l~~~~~~~~~l~v~r~~~~   72 (79)
T cd00989           2 ILGFVPGGP-PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLV--DAVQENPGKPLTLTVERNGET   72 (79)
T ss_pred             eeeEeccCC-ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHHHHH--HHHHHCCCceEEEEEEECCEE
Confidence            466654333 34689999999999999999999999999999999775433  3333 3367899999876543

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1892|consensus

Probab=98.43  E-value=4.4e-07  Score=101.38  Aligned_cols=83  Identities=29%  Similarity=0.564  Sum_probs=75.2

Q ss_pred             CCceEEEeccCCceeEEEEcc-----CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          49 PDPRFITFQKEGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        49 ~~~r~v~l~k~g~lG~~i~g~-----~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      |+...|+|+|.+|+|++|+..     ..-||||.+|.+|++|+..| |+.||++|.|||.++-+++.+.|+.++.+.|..
T Consensus       932 pei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~v 1011 (1629)
T KOG1892|consen  932 PEIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNV 1011 (1629)
T ss_pred             CceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCe
Confidence            566788999999999999863     23589999999999999999 999999999999999999999999999999999


Q ss_pred             eEEEEEeCC
Q psy9827         123 IHLIVQNRR  131 (627)
Q Consensus       123 V~L~v~r~~  131 (627)
                      |.|.|...+
T Consensus      1012 V~leVaKqg 1020 (1629)
T KOG1892|consen 1012 VHLEVAKQG 1020 (1629)
T ss_pred             EEEehhhhh
Confidence            999998654

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.42  E-value=3.7e-07  Score=96.77  Aligned_cols=102  Identities=20%  Similarity=0.360  Sum_probs=76.2

Q ss_pred             cccCCCCCccccccCCCCceEEEeccC---CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCH
Q psy9827          33 AVQPGSPDLFSIFFVEPDPRFITFQKE---GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR  109 (627)
Q Consensus        33 ai~~~~~d~~~~~~~~~~~r~v~l~k~---g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~  109 (627)
                      .+....+|+|+.|+...+.........   .++|+.+... +.+++|..|.++|||+++||++||+|++|||.++.+++.
T Consensus        21 ~m~~~l~D~h~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~-~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~   99 (334)
T TIGR00225        21 GMLASLNDPYTRYLSPETAKSFSETTSGSLEGIGIQVGMD-DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSL   99 (334)
T ss_pred             HHHHhCCCCCccccCHHHHHHHHHhccCceEEEEEEEEEE-CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCH
Confidence            344567899998876554433211111   3789888654 347999999999999999999999999999999999876


Q ss_pred             HHHHHHHh-cCCCeeEEEEEeCCcccc
Q psy9827         110 EEAVLFLL-SLQDQIHLIVQNRRDEYE  135 (627)
Q Consensus       110 ~~~~~~l~-~~g~~V~L~v~r~~~~~~  135 (627)
                      .++...+. ..+..+.|++.|.+....
T Consensus       100 ~~~~~~l~~~~g~~v~l~v~R~g~~~~  126 (334)
T TIGR00225       100 DDAVALIRGKKGTKVSLEILRAGKSKP  126 (334)
T ss_pred             HHHHHhccCCCCCEEEEEEEeCCCCce
Confidence            66655554 468899999998765443

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.34  E-value=1.9e-06  Score=71.10  Aligned_cols=65  Identities=26%  Similarity=0.340  Sum_probs=50.3

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV  137 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~  137 (627)
                      .|++|..|.++|||+. ||++||+|++|||.++.++........-...+..+.|++.|++..+...
T Consensus         8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~   72 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREEKELPED   72 (79)
T ss_pred             cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEE
Confidence            4799999999999987 8999999999999999876544333222346789999999876554433

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.34  E-value=4.6e-06  Score=68.97  Aligned_cols=73  Identities=29%  Similarity=0.438  Sum_probs=55.6

Q ss_pred             EEEeec-CCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEE
Q psy9827         202 VQLSKS-RKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL  276 (627)
Q Consensus       202 V~L~k~-~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l  276 (627)
                      +.+.+. ..+.||.+...    .+++|..|.++    +++..++|++||+|++|||.++.+++++++...++.....++|
T Consensus         4 ~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~----s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l   79 (82)
T cd00992           4 VTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPG----GPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTL   79 (82)
T ss_pred             EEEEeCCCCCcCEEEeCcccCCCCeEEEEECCC----ChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEE
Confidence            445544 23334443333    37999999876    3555689999999999999999999999999999997777777


Q ss_pred             EE
Q psy9827         277 TI  278 (627)
Q Consensus       277 ~V  278 (627)
                      .+
T Consensus        80 ~v   81 (82)
T cd00992          80 TV   81 (82)
T ss_pred             EE
Confidence            65

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.31  E-value=5.5e-06  Score=79.57  Aligned_cols=140  Identities=14%  Similarity=0.066  Sum_probs=89.7

Q ss_pred             ceEEEeCcc---HHHHHHHHhhhCCCC----ccc---CCC-------CCCCCHHHHHHHHhcccc-----cCCcee----
Q psy9827         455 RPVVLFGPV---ADLARDKLLKDFPDK----FSA---PRK-------FNFILWATIKDTAMYQSS-----KEPGMY----  508 (627)
Q Consensus       455 RpvVl~Gp~---k~~l~~~Ll~~~p~~----f~~---~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y----  508 (627)
                      +.++|+||+   |+|+.+.|....+..    |..   .++       .+|++.++|..++..+.+     +.+++|    
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            468999999   999999987764421    211   111       269999999988765432     246677    


Q ss_pred             hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCC--cccC----CCCCHHHHHHHHHHHHHHHHHhc-Cccc
Q psy9827         509 QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDS--MYQG----KDIKKEVKIKLFEQSQKLEKVWS-HVFT  579 (627)
Q Consensus       509 ~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~pps--l~~~----~~~~e~~~~~~~~~~~~~e~~~~-~~fd  579 (627)
                      .+...+++|+.||++.+ ..+ ..+  +.++...+||+.+|.  +.++    .+..++++++++.+..    .|. ..+|
T Consensus        82 ~i~~~~~~g~~vv~~g~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~----~~~~~~~~  155 (179)
T TIGR02322        82 EIDQWLEAGDVVVVNGSRAVLPEAR--QRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLARSA----RFAAAPAD  155 (179)
T ss_pred             HHHHHHhcCCEEEEECCHHHHHHHH--HHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHh----hcccccCC
Confidence            66778889999999999 323 211  233322388988654  2222    3444444555554332    232 4567


Q ss_pred             EE-EECC-CHHHHHHHHHHHHHh
Q psy9827         580 GT-ITLS-GVDVWYRKTRELIEK  600 (627)
Q Consensus       580 ~v-i~n~-~l~~~~~~l~~~i~~  600 (627)
                      ++ |.|+ ++++++.+|.+++..
T Consensus       156 ~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       156 VTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcc
Confidence            77 5564 799999999998864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.25  E-value=2e-06  Score=97.62  Aligned_cols=97  Identities=18%  Similarity=0.259  Sum_probs=75.2

Q ss_pred             ccccCCCCCccccccCCCCceEEEeccC---CceeEEEEccCCCCEEEEEeCCCChhhhc-CCCCCCEEEEEC--C---E
Q psy9827          32 TAVQPGSPDLFSIFFVEPDPRFITFQKE---GSVGIRLTGGNKVGIFVTAVQPGSPASLQ-GLQPGDKILKVN--D---M  102 (627)
Q Consensus        32 ~ai~~~~~d~~~~~~~~~~~r~v~l~k~---g~lG~~i~g~~~~gi~V~~V~~gspA~~a-GL~~GD~Il~Vn--G---~  102 (627)
                      +++... .|||+.||...+...+.....   +|+|+.+... +.+++|..|.|||||+++ ||++||+|++||  |   .
T Consensus       214 ~~m~~~-lDphT~Y~sp~e~e~f~~~~~~~~~GIGa~l~~~-~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~  291 (667)
T PRK11186        214 NAFARE-IDPHTSYLSPRNAEQFNTEMNLSLEGIGAVLQMD-DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIV  291 (667)
T ss_pred             HHHHhC-CCCCccccChHHHHHhhhccCCceeEEEEEEEEe-CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCccc
Confidence            444333 499999998777665443322   4789888764 346999999999999998 899999999999  4   3


Q ss_pred             eCCCCCHHHHHHHHh-cCCCeeEEEEEeC
Q psy9827         103 DMKGITREEAVLFLL-SLQDQIHLIVQNR  130 (627)
Q Consensus       103 ~v~~~~~~~~~~~l~-~~g~~V~L~v~r~  130 (627)
                      ++.+++..+++.+++ ..|..|.|+|.|.
T Consensus       292 dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        292 DVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             ccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            566787778888777 6789999999874

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.24  E-value=1.1e-05  Score=66.93  Aligned_cols=75  Identities=29%  Similarity=0.475  Sum_probs=58.1

Q ss_pred             EEEEeecCCCCCeeeee--C----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         201 RVQLSKSRKKDDFGIIL--G----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       201 ~V~L~k~~~~~~~gi~~--~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .+.+.+..  ..||+..  .    .+++|..|.++    +++..++|++||+|++|||+.+.+++..+....+...+..+
T Consensus         4 ~~~~~~~~--~~~G~~~~~~~~~~~~~~i~~v~~~----s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~   77 (85)
T smart00228        4 LVELEKGG--GGLGFSLVGGKDEGGGVVVSSVVPG----SPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKV   77 (85)
T ss_pred             EEEEEECC--CcccEEEECCCCCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            34455543  3444444  2    58999999876    34555679999999999999999999999999988877789


Q ss_pred             EEEEEeC
Q psy9827         275 SLTIRRE  281 (627)
Q Consensus       275 ~l~V~r~  281 (627)
                      .|.+.|+
T Consensus        78 ~l~i~r~   84 (85)
T smart00228       78 TLTVLRG   84 (85)
T ss_pred             EEEEEeC
Confidence            9998875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3552|consensus

Probab=98.22  E-value=1.5e-06  Score=97.24  Aligned_cols=77  Identities=32%  Similarity=0.573  Sum_probs=70.5

Q ss_pred             CceEEEeccCCceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          50 DPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        50 ~~r~v~l~k~g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      .+|.+++.+...|||.++.|  .+++|..|.+|+|+.  | |++||+|++|||.++.+++++.++.+++.+...|.|+|.
T Consensus        55 ~pr~vq~~r~~~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~  130 (1298)
T KOG3552|consen   55 EPRQVQLQRNASLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVC  130 (1298)
T ss_pred             cchhhhhhccccccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEe
Confidence            47888898888888888877  679999999999986  7 999999999999999999999999999999999999998


Q ss_pred             eC
Q psy9827         129 NR  130 (627)
Q Consensus       129 r~  130 (627)
                      +.
T Consensus       131 qP  132 (1298)
T KOG3552|consen  131 QP  132 (1298)
T ss_pred             cc
Confidence            73

>KOG3571|consensus

Probab=98.18  E-value=4.4e-06  Score=88.29  Aligned_cols=79  Identities=32%  Similarity=0.561  Sum_probs=66.6

Q ss_pred             eEEEeccC--CceeEEEEcc----CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh---cCCC
Q psy9827          52 RFITFQKE--GSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL---SLQD  121 (627)
Q Consensus        52 r~v~l~k~--g~lG~~i~g~----~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~---~~g~  121 (627)
                      .+|.|...  ..|||+|+|.    .+.||||.+|.+|++.+..| +.+||+||+||.+++.+++..+|+..|+   +...
T Consensus       251 ITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~g  330 (626)
T KOG3571|consen  251 ITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPG  330 (626)
T ss_pred             EEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCC
Confidence            44455443  4799999993    36799999999999999999 9999999999999999999999999987   4456


Q ss_pred             eeEEEEEeC
Q psy9827         122 QIHLIVQNR  130 (627)
Q Consensus       122 ~V~L~v~r~  130 (627)
                      +++|+|...
T Consensus       331 Pi~ltvAk~  339 (626)
T KOG3571|consen  331 PIKLTVAKC  339 (626)
T ss_pred             CeEEEEeec
Confidence            788888754

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.16  E-value=8.9e-06  Score=65.18  Aligned_cols=55  Identities=24%  Similarity=0.439  Sum_probs=47.7

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC-CeEEEEE
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTI  278 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~-~~v~l~V  278 (627)
                      +++|..|.++    ++|..++|++||+|++|||.++.+++++++..+++... ..++|++
T Consensus        14 ~~~V~~v~~~----s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          14 GVVVLSVEPG----SPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CEEEEEeCCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            8999999876    45556899999999999999999888899999999865 6788776

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3549|consensus

Probab=98.15  E-value=1.1e-05  Score=81.61  Aligned_cols=84  Identities=17%  Similarity=0.269  Sum_probs=68.2

Q ss_pred             CccEEEEEeecC-CCCCeeeeeCC----cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILGN----KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~~----gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ...++|++.+.. ++.|++|.+|.    +++|+.|.+.   ..|...|.|-+||.|+.|||+.+.+++|+|++.+|++++
T Consensus        53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kd---QaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAG  129 (505)
T KOG3549|consen   53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKD---QAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAG  129 (505)
T ss_pred             CCceeEEEEeeecCcceeeeccccccCccEEeehhhhh---hhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcC
Confidence            355677776643 44555666652    8999999876   567778999999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCC
Q psy9827         272 EKLSLTIRREVP  283 (627)
Q Consensus       272 ~~v~l~V~r~~~  283 (627)
                      +.|+|+|..-..
T Consensus       130 deVtlTV~~lr~  141 (505)
T KOG3549|consen  130 DEVTLTVKHLRA  141 (505)
T ss_pred             CEEEEEeHhhhc
Confidence            999999965433

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.14  E-value=8.6e-06  Score=82.72  Aligned_cols=76  Identities=17%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             ceeEEEEcc--CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccce
Q psy9827          61 SVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEH  136 (627)
Q Consensus        61 ~lG~~i~g~--~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~  136 (627)
                      .+|++....  ...|+.|..+.++++|+++||++||+|++|||.++.++............++.++|+|.|++.....
T Consensus       178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i  255 (259)
T TIGR01713       178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQREDI  255 (259)
T ss_pred             eEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEE
Confidence            567766542  2469999999999999999999999999999999998877655544446778999999998765443

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3606|consensus

Probab=98.11  E-value=6.1e-06  Score=80.81  Aligned_cols=78  Identities=26%  Similarity=0.520  Sum_probs=68.8

Q ss_pred             eEEEeccCC---ceeEEEEccC-----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy9827          52 RFITFQKEG---SVGIRLTGGN-----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFL  116 (627)
Q Consensus        52 r~v~l~k~g---~lG~~i~g~~-----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l  116 (627)
                      |.|.|.|.|   .|||-|..|.           -.||||+.+.||+.|+..| |.+.|.+|+|||+.|.+.+.+++..++
T Consensus       160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM  239 (358)
T KOG3606|consen  160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM  239 (358)
T ss_pred             hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence            456677765   7999998873           3689999999999999999 899999999999999999999999999


Q ss_pred             hcCCCeeEEEEEe
Q psy9827         117 LSLQDQIHLIVQN  129 (627)
Q Consensus       117 ~~~g~~V~L~v~r  129 (627)
                      .+....+.++|..
T Consensus       240 vANshNLIiTVkP  252 (358)
T KOG3606|consen  240 VANSHNLIITVKP  252 (358)
T ss_pred             hhcccceEEEecc
Confidence            8888888888874

>KOG3651|consensus

Probab=98.10  E-value=1e-05  Score=80.35  Aligned_cols=78  Identities=23%  Similarity=0.466  Sum_probs=68.2

Q ss_pred             ceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          51 PRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        51 ~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      +..|.+.|.  +-+||+|.||..  +.+||..|..++||++.| ++.||.|++|||+++.+.+..+++.+++..-++|.+
T Consensus         5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I   84 (429)
T KOG3651|consen    5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI   84 (429)
T ss_pred             cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence            345677775  469999999865  357899999999999999 999999999999999999999999999988888888


Q ss_pred             EEE
Q psy9827         126 IVQ  128 (627)
Q Consensus       126 ~v~  128 (627)
                      .+.
T Consensus        85 hyN   87 (429)
T KOG3651|consen   85 HYN   87 (429)
T ss_pred             Eeh
Confidence            765

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.03  E-value=1.2e-05  Score=66.84  Aligned_cols=59  Identities=22%  Similarity=0.418  Sum_probs=50.1

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      .+++|.+|.++    ++|..+||++||+|++|||.++.  +..++...+..  .+..++|+|.|++.
T Consensus        14 ~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~   74 (82)
T PF13180_consen   14 GGVVVVSVIPG----SPAAKAGLQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGE   74 (82)
T ss_dssp             SSEEEEEESTT----SHHHHTTS-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred             CeEEEEEeCCC----CcHHHCCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            48999999876    56677889999999999999998  89999999964  56799999999764

...

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.95  E-value=3.7e-05  Score=63.42  Aligned_cols=59  Identities=17%  Similarity=0.313  Sum_probs=50.1

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~  283 (627)
                      .|++|.+|.++    +++..+||++||+|++|||.++.  +++++...|...  +..+.+.+.|++.
T Consensus        10 ~Gv~V~~V~~~----spa~~aGL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~   70 (79)
T cd00991          10 AGVVIVGVIVG----SPAENAVLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTT   70 (79)
T ss_pred             CcEEEEEECCC----ChHHhcCCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCE
Confidence            57899999876    45667899999999999999999  889999999874  5688999988653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3551|consensus

Probab=97.94  E-value=1.5e-05  Score=81.78  Aligned_cols=81  Identities=22%  Similarity=0.334  Sum_probs=66.0

Q ss_pred             cEEEEEeecCCCCCeeeee--C----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         199 TLRVQLSKSRKKDDFGIIL--G----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~--~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ...|.+.|.. ..|+||.+  |    -+|+|+.|.+|.   .++..+.|..||.|++|||.++...||+|+++.|+++++
T Consensus        85 ~R~V~V~K~d-~gGLGISIKGGreNkMPIlISKIFkGl---AADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk  160 (506)
T KOG3551|consen   85 ERRVRVVKQD-AGGLGISIKGGRENKMPILISKIFKGL---AADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK  160 (506)
T ss_pred             cceeEEEEec-CCcceEEeecCcccCCceehhHhcccc---ccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence            3677777753 34555555  4    289999999984   456678899999999999999999999999999999999


Q ss_pred             eEEEEEEeCCC
Q psy9827         273 KLSLTIRREVP  283 (627)
Q Consensus       273 ~v~l~V~r~~~  283 (627)
                      .|.|.|.+-..
T Consensus       161 eV~levKy~RE  171 (506)
T KOG3551|consen  161 EVLLEVKYMRE  171 (506)
T ss_pred             eeeeeeeeehh
Confidence            99998876443

>KOG1892|consensus

Probab=97.91  E-value=3.1e-05  Score=87.07  Aligned_cols=82  Identities=27%  Similarity=0.455  Sum_probs=70.2

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      ++...+|+|.|. .+-|+.|+-.       -||||+.|.+|   ++|+.+|.|..||.+|.|||+++-|.+.+.+..+|.
T Consensus       931 ~pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~G---gaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt 1006 (1629)
T KOG1892|consen  931 EPEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEG---GAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT 1006 (1629)
T ss_pred             CCceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccC---CccccccccccCceeeeecCcccccccHHHHHHHHh
Confidence            466778888886 4455555542       28999999999   678889999999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeC
Q psy9827         269 SSKEKLSLTIRRE  281 (627)
Q Consensus       269 ~~~~~v~l~V~r~  281 (627)
                      +++..|+|.|...
T Consensus      1007 rtg~vV~leVaKq 1019 (1629)
T KOG1892|consen 1007 RTGNVVHLEVAKQ 1019 (1629)
T ss_pred             ccCCeEEEehhhh
Confidence            9999999999754

>KOG3606|consensus

Probab=97.89  E-value=2.8e-05  Score=76.23  Aligned_cols=84  Identities=23%  Similarity=0.308  Sum_probs=68.3

Q ss_pred             cEEEEEeecCC--CCCeeeeeC-------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHH
Q psy9827         199 TLRVQLSKSRK--KDDFGIILG-------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEA  263 (627)
Q Consensus       199 ~~~V~L~k~~~--~~~~gi~~~-------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~  263 (627)
                      ...|.|+|-..  ..||-|+.|             .||||+++.+|   |.|...|.|.+.|++++|||+.|.|+|++++
T Consensus       159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpG---GLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV  235 (358)
T KOG3606|consen  159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPG---GLAESTGLLAVNDEVLEVNGIEVAGKTLDQV  235 (358)
T ss_pred             hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCC---ccccccceeeecceeEEEcCEEeccccHHHH
Confidence            45677776543  344444443             48999999998   6777789999999999999999999999999


Q ss_pred             HHHHHcCCCeEEEEEEeCCCCC
Q psy9827         264 RKLIDSSKEKLSLTIRREVPRP  285 (627)
Q Consensus       264 ~~~l~~~~~~v~l~V~r~~~~~  285 (627)
                      ..+|-.....+.++|.+..++.
T Consensus       236 TDMMvANshNLIiTVkPANQRn  257 (358)
T KOG3606|consen  236 TDMMVANSHNLIITVKPANQRN  257 (358)
T ss_pred             HHHHhhcccceEEEeccccccc
Confidence            9999999999999998876653

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.85  E-value=4.9e-05  Score=83.47  Aligned_cols=73  Identities=30%  Similarity=0.437  Sum_probs=58.0

Q ss_pred             ceeEEEEcc------------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          61 SVGIRLTGG------------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        61 ~lG~~i~g~------------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      .+|+.+...            ...|++|..|.++|||+++||++||+|++|||.++.++.+..........++.+.|++.
T Consensus       339 ~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~  418 (428)
T TIGR02037       339 FLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLIL  418 (428)
T ss_pred             ccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEE
Confidence            478777642            12589999999999999999999999999999999987665444333356889999999


Q ss_pred             eCCcc
Q psy9827         129 NRRDE  133 (627)
Q Consensus       129 r~~~~  133 (627)
                      |++..
T Consensus       419 R~g~~  423 (428)
T TIGR02037       419 RGGAT  423 (428)
T ss_pred             ECCEE
Confidence            87653

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG1320|consensus

Probab=97.84  E-value=3.6e-05  Score=83.10  Aligned_cols=125  Identities=19%  Similarity=0.278  Sum_probs=86.2

Q ss_pred             ccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEEEe-ccC-----------------Ccee
Q psy9827          10 TFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITF-QKE-----------------GSVG   63 (627)
Q Consensus        10 ~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~l-~k~-----------------g~lG   63 (627)
                      .|.||+ ++++.++       +|+.||+| ++.....+-.+++.|++|....+.. .+.                 ..+|
T Consensus       293 ~~~qtd~ai~~~nsg~~ll~~DG~~IgVn-~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e~~~~lr~~~~~~p~~~~~g  371 (473)
T KOG1320|consen  293 KINQTDAAINPGNSGGPLLNLDGEVIGVN-TRKVTRIGFSHGISFKIPIDTVLVIVLRLGEFQISLRPVKPLVPVHQYIG  371 (473)
T ss_pred             eecccchhhhcccCCCcEEEecCcEeeee-eeeeEEeeccccceeccCchHhhhhhhhhhhhceeeccccCcccccccCC
Confidence            456777 8888877       58999999 7777777777999999996543211 000                 1222


Q ss_pred             EE---EEcc---------------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          64 IR---LTGG---------------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        64 ~~---i~g~---------------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      ..   +.++               ...+++|+.|.||+++...++.+||+|++|||+++.++.|..-.......++.|.+
T Consensus       372 ~~s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~v  451 (473)
T KOG1320|consen  372 LPSYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAV  451 (473)
T ss_pred             ceeEEEecceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEE
Confidence            21   1111               01368999999999999999999999999999999998775544333334467777


Q ss_pred             EEEeCCcccc
Q psy9827         126 IVQNRRDEYE  135 (627)
Q Consensus       126 ~v~r~~~~~~  135 (627)
                      ..++..+...
T Consensus       452 l~~~~~e~~t  461 (473)
T KOG1320|consen  452 LDRRSAEDAT  461 (473)
T ss_pred             EEecCcccee
Confidence            7776554433

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.80  E-value=0.00016  Score=77.65  Aligned_cols=49  Identities=27%  Similarity=0.493  Sum_probs=40.6

Q ss_pred             EEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          76 VTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        76 V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      |..|.|||+|+++||++||+|++|||..+.++.+.....    .+..+.++|.
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D~~~~l----~~e~l~L~V~   50 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLIDYQFLC----ADEELELEVL   50 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHh----cCCcEEEEEE
Confidence            678999999999999999999999999999886644332    2467888886

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.80  E-value=8.3e-05  Score=60.98  Aligned_cols=57  Identities=23%  Similarity=0.330  Sum_probs=47.7

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV  282 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~~  282 (627)
                      +++|..|.++    +++..++|++||+|++|||.++.  +++++...+... +..+.+.+.|++
T Consensus        13 ~~~V~~v~~~----s~a~~~gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989          13 EPVIGEVVPG----SPAAKAGLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             CcEEEeECCC----CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence            5789999776    45566789999999999999999  889999998875 568889898865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=97.80  E-value=0.00011  Score=61.21  Aligned_cols=59  Identities=24%  Similarity=0.524  Sum_probs=49.3

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRRE  281 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~  281 (627)
                      .+++|..|.++    +++..++|++||+|++|||.++.+.++.++..++.. .+..+.+.+.|+
T Consensus        13 ~~~~V~~v~~~----s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          13 GGLVITSVLPG----SPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             CeEEEEEecCC----CCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            57899999876    455567999999999999999997777999988876 456889999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=97.79  E-value=3.6e-05  Score=83.80  Aligned_cols=81  Identities=36%  Similarity=0.604  Sum_probs=69.8

Q ss_pred             CCceEEEeccC---CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          49 PDPRFITFQKE---GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        49 ~~~r~v~l~k~---g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      ..+|.+.|.|.   ..+-|.+.||..  .||||..|.||+.|+.+||+.||+|++|||.+..+++...|..+|... ..+
T Consensus       534 AK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thL  612 (1283)
T KOG3542|consen  534 AKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THL  612 (1283)
T ss_pred             ccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceE
Confidence            47788888773   489999999864  579999999999999999999999999999999999999998888753 577


Q ss_pred             EEEEEeC
Q psy9827         124 HLIVQNR  130 (627)
Q Consensus       124 ~L~v~r~  130 (627)
                      +|+|..+
T Consensus       613 tltvKtN  619 (1283)
T KOG3542|consen  613 TLTVKTN  619 (1283)
T ss_pred             EEEEecc
Confidence            8887754

>KOG3553|consensus

Probab=97.77  E-value=3e-05  Score=64.60  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  281 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~  281 (627)
                      .||||++|..|    ++|..+||+.+|.|+.|||.++.-++|+.+++.|++ ...+.+.|.|.
T Consensus        59 ~GiYvT~V~eG----sPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~  116 (124)
T KOG3553|consen   59 KGIYVTRVSEG----SPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQ  116 (124)
T ss_pred             ccEEEEEeccC----ChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhh
Confidence            38999999887    466678999999999999999999999999999987 33445555553

>PRK08356 hypothetical protein; Provisional

Probab=97.77  E-value=0.00012  Score=71.47  Aligned_cols=143  Identities=12%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             ceEEEeCcc---HHHHHHHHhhhCCCCc--cc--C---------CCCCCCCHHHHHHHH------hcccccCCcee----
Q psy9827         455 RPVVLFGPV---ADLARDKLLKDFPDKF--SA--P---------RKFNFILWATIKDTA------MYQSSKEPGMY----  508 (627)
Q Consensus       455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f--~~--~---------~~~~Fvs~e~f~~~i------~~~~~~~~~~Y----  508 (627)
                      ..|+|+||+   |+|+.+.|. ++ ...  ..  +         ...+|++.++|+.++      ++|.. -+++|    
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~-g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~-~~~~yG~~~   82 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EK-GFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRY-LKEKYGEDI   82 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HC-CCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHH-HHHhcCcHH
Confidence            468899998   999999994 43 211  11  1         112699998888653      44443 35666    


Q ss_pred             hHHhHHhCCCcE-EEecC--Cce-eccc-cCCCCceeEEEEcCCC--cccC--CCC--------CHHHHHHHHHHHHHH-
Q psy9827         509 QGKDSMYQGKDS-MYQGK--ESM-YQGK-DSMYQGKDSMYQGKDS--MYQG--KDI--------KKEVKIKLFEQSQKL-  570 (627)
Q Consensus       509 ~V~~v~~~gk~c-iLdi~--~~l-~~~~-~~~~P~~~vIFI~pps--l~~~--~~~--------~e~~~~~~~~~~~~~-  570 (627)
                      .++.+++..+.| .+++|  ..+ .... ......  +|||.+|.  +.++  +|.        +.++++++.++-..+ 
T Consensus        83 ~~~~~~~~~~~~~~ividG~r~~~q~~~l~~~~~~--vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~  160 (195)
T PRK08356         83 LIRLAVDKKRNCKNIAIDGVRSRGEVEAIKRMGGK--VIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLY  160 (195)
T ss_pred             HHHHHHHHhccCCeEEEcCcCCHHHHHHHHhcCCE--EEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhh
Confidence            223333332111 25556  322 2100 022235  89998886  1111  222        233344443322221 


Q ss_pred             -HHHhcCcccEEEEC-CCHHHHHHHHHHHHHhhC
Q psy9827         571 -EKVWSHVFTGTITL-SGVDVWYRKTRELIEKQQ  602 (627)
Q Consensus       571 -e~~~~~~fd~vi~n-~~l~~~~~~l~~~i~~~~  602 (627)
                       ..++...+|++|+| +++++++.+|..++...+
T Consensus       161 ~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~~  194 (195)
T PRK08356        161 HTTKLKDKADFVIVNEGTLEELRKKVEEILRELS  194 (195)
T ss_pred             hhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHhc
Confidence             12334679999998 599999999999998753

>KOG1421|consensus

Probab=97.76  E-value=0.00038  Score=76.48  Aligned_cols=142  Identities=22%  Similarity=0.336  Sum_probs=101.7

Q ss_pred             EEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHH-HH-hcCCCeeEEEEEeCCcccceeeecCCCCccccccC
Q psy9827          74 IFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL-FL-LSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVN  151 (627)
Q Consensus        74 i~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~-~l-~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~  151 (627)
                      .+|..|.++|||++. |++||++++||+.-+.++   .+.. .| ...|+.+.|+|+|.+.+++..+.-..-..   -..
T Consensus       305 LvV~~vL~~gpa~k~-Le~GDillavN~t~l~df---~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~---itp  377 (955)
T KOG1421|consen  305 LVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF---EALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHG---ITP  377 (955)
T ss_pred             EEEEEeccCCchhhc-cCCCcEEEEEcceehHHH---HHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccC---CCC
Confidence            578999999999874 999999999997776443   3322 22 36789999999999988777664332222   134


Q ss_pred             CeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCC
Q psy9827         152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLD  231 (627)
Q Consensus       152 D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~  231 (627)
                      |+.+++-|..+.+.+++.+..-                                        -+.. .|+||++=.    
T Consensus       378 ~R~levcGav~hdlsyq~ar~y----------------------------------------~lP~-~GvyVa~~~----  412 (955)
T KOG1421|consen  378 DRFLEVCGAVFHDLSYQLARLY----------------------------------------ALPV-EGVYVASPG----  412 (955)
T ss_pred             ceEEEEcceEecCCCHHHHhhc----------------------------------------cccc-CcEEEccCC----
Confidence            7888888998888887754211                                        0111 256766542    


Q ss_pred             CCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         232 NNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       232 ~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                       ++....++.. |..|.+|||.++.  ++..++..++...
T Consensus       413 -gsf~~~~~~y-~~ii~~vanK~tP--dLdaFidvlk~L~  448 (955)
T KOG1421|consen  413 -GSFRHRGPRY-GQIIDSVANKPTP--DLDAFIDVLKELP  448 (955)
T ss_pred             -CCccccCCcc-eEEEEeecCCcCC--CHHHHHHHHHhcc
Confidence             4555556666 9999999999999  8899999998754

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=97.75  E-value=0.00014  Score=67.08  Aligned_cols=144  Identities=13%  Similarity=0.039  Sum_probs=93.7

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCC--ccc-----CCCC-------CCCCHHHHHHHHhcccc-----cCCcee--
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDK--FSA-----PRKF-------NFILWATIKDTAMYQSS-----KEPGMY--  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~--f~~-----~~~~-------~Fvs~e~f~~~i~~~~~-----~~~~~Y--  508 (627)
                      ..+.|+++|||   |++|++.+....+..  |-+     .+|.       -=++..+|.++-..|.|     .+|-.|  
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence            46899999999   999999887765543  332     2331       25678899998766654     247788  


Q ss_pred             --hHHhHHhCCCcEEEecC-Cce-eccccCCCC-ceeEEEEcCCC-ccc----CCCCCHHHHHHHHHHHHHHHHHhcCcc
Q psy9827         509 --QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQ-GKDSMYQGKDS-MYQ----GKDIKKEVKIKLFEQSQKLEKVWSHVF  578 (627)
Q Consensus       509 --~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P-~~~vIFI~pps-l~~----~~~~~e~~~~~~~~~~~~~e~~~~~~f  578 (627)
                        +|.+-+++|-++|...+ ..| ..|  ..|| +.++....+|. |.+    +.|.+.+++..++.++..   .-..-+
T Consensus        84 p~eId~wl~~G~vvl~NgSRa~Lp~ar--rry~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL~R~a~---~~~~~~  158 (192)
T COG3709          84 PAEIDLWLAAGDVVLVNGSRAVLPQAR--RRYPQLLVVCITASPEVLAQRLAERGRESREEILARLARAAR---YTAGPG  158 (192)
T ss_pred             chhHHHHHhCCCEEEEeccHhhhHHHH--HhhhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHHHhhcc---cccCCC
Confidence              99999999999999999 666 332  3444 21122333343 443    355555545555555433   222356


Q ss_pred             cEE-EECC-CHHHHHHHHHHHHHhh
Q psy9827         579 TGT-ITLS-GVDVWYRKTRELIEKQ  601 (627)
Q Consensus       579 d~v-i~n~-~l~~~~~~l~~~i~~~  601 (627)
                      |.+ |.|+ .++.+.+++...+.+.
T Consensus       159 dv~~idNsG~l~~ag~~ll~~l~~~  183 (192)
T COG3709         159 DVTTIDNSGELEDAGERLLALLHQD  183 (192)
T ss_pred             CeEEEcCCCcHHHHHHHHHHHHHhh
Confidence            655 5565 7999999999988754

>KOG3552|consensus

Probab=97.69  E-value=6.1e-05  Score=84.79  Aligned_cols=77  Identities=23%  Similarity=0.398  Sum_probs=66.6

Q ss_pred             cEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEE
Q psy9827         199 TLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  278 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V  278 (627)
                      +..|.+.+ ....||||+-|.+++|..|.+|++.     .|.|.+||+|+.|||.++.++.++-++++++.+...|.|+|
T Consensus        56 pr~vq~~r-~~~lGFgfvagrPviVr~VT~GGps-----~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV  129 (1298)
T KOG3552|consen   56 PRQVQLQR-NASLGFGFVAGRPVIVRFVTEGGPS-----IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV  129 (1298)
T ss_pred             chhhhhhc-cccccceeecCCceEEEEecCCCCc-----cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence            34444444 3568999999999999999998532     47899999999999999999999999999999999999999


Q ss_pred             EeC
Q psy9827         279 RRE  281 (627)
Q Consensus       279 ~r~  281 (627)
                      +++
T Consensus       130 ~qP  132 (1298)
T KOG3552|consen  130 CQP  132 (1298)
T ss_pred             ecc
Confidence            885

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.67  E-value=0.00014  Score=61.06  Aligned_cols=59  Identities=27%  Similarity=0.445  Sum_probs=49.1

Q ss_pred             CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCC
Q psy9827         218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV  282 (627)
Q Consensus       218 ~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~  282 (627)
                      ..|++|..|.++    +++..++|++||+|++|||.++.  +..++..++...  +..+.+.+.|++
T Consensus        23 ~~g~~V~~v~~~----s~a~~~gl~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          23 TKGVLVASVDPG----SPAAKAGLKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             CCEEEEEEECCC----CHHHHcCCCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            347899999876    45556789999999999999999  888888888765  678999998865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00054 RIP metalloprotease RseP

Probab=97.67  E-value=0.0001  Score=80.53  Aligned_cols=66  Identities=20%  Similarity=0.297  Sum_probs=52.4

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .+++|..|.++|||+++||++||+|++|||.++.++.+...... ...++.+.+++.|++..+...+
T Consensus       203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~dl~~~l~-~~~~~~v~l~v~R~g~~~~~~v  268 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTDFVSAVK-ENPGKSMDIKVERNGETLSISL  268 (420)
T ss_pred             cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHH-hCCCCceEEEEEECCEEEEEEE
Confidence            47899999999999999999999999999999988755443322 2467789999998776554443

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3571|consensus

Probab=97.67  E-value=0.00015  Score=76.96  Aligned_cols=86  Identities=19%  Similarity=0.276  Sum_probs=67.3

Q ss_pred             CccEEEEEee-cCCCCCeeeee-----C-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         197 PQTLRVQLSK-SRKKDDFGIIL-----G-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       197 ~~~~~V~L~k-~~~~~~~gi~~-----~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      ...++|.|-= .-.-+|..+++     | .||||.+|.+|   |+.|.+|.+.+||.||.||.+++.+|+..||+..|+.
T Consensus       248 lnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkg---GAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLRE  324 (626)
T KOG3571|consen  248 LNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKG---GAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLRE  324 (626)
T ss_pred             eeEEEEEecccccccceeEeecccCcCCCCceEEeeeccC---ceeeccCccCccceEEEeeecchhhcCchHHHHHHHH
Confidence            3456666632 22224555555     2 48999999998   6889999999999999999999999999999999996


Q ss_pred             ---CCCeEEEEEEeCCCCC
Q psy9827         270 ---SKEKLSLTIRREVPRP  285 (627)
Q Consensus       270 ---~~~~v~l~V~r~~~~~  285 (627)
                         ..+.++|+|...-++.
T Consensus       325 aV~~~gPi~ltvAk~~DP~  343 (626)
T KOG3571|consen  325 AVSRPGPIKLTVAKCWDPN  343 (626)
T ss_pred             HhccCCCeEEEEeeccCCC
Confidence               4567999997765543

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.67  E-value=0.00023  Score=58.62  Aligned_cols=58  Identities=21%  Similarity=0.450  Sum_probs=47.1

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.+++    +|.. +|++||+|++|||.++.  +.+++..++..  .+..+.+.+.|++.
T Consensus         8 ~Gv~V~~V~~~s----~A~~-gL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~   67 (79)
T cd00986           8 HGVYVTSVVEGM----PAAG-KLKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEK   67 (79)
T ss_pred             cCEEEEEECCCC----chhh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            378899998773    3334 59999999999999999  88999999975  35688999988654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.58  E-value=0.00017  Score=79.64  Aligned_cols=65  Identities=23%  Similarity=0.292  Sum_probs=52.4

Q ss_pred             CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      +++|..|.++|||+++||++||+|++|||.++.++.+...... ...++.+.+++.|++......+
T Consensus       222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~dl~~~l~-~~~~~~v~l~v~R~g~~~~~~v  286 (449)
T PRK10779        222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQTFVTLVR-DNPGKPLALEIERQGSPLSLTL  286 (449)
T ss_pred             CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHH-hCCCCEEEEEEEECCEEEEEEE
Confidence            5889999999999999999999999999999988766554322 2567789999998776544433

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.48  E-value=0.00029  Score=57.93  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  282 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~  282 (627)
                      .+++|..|.++    +++..++|++||+|++|||.++.  ++.++...+ ..+..+.+.+.|++
T Consensus        12 ~~~~V~~V~~~----s~a~~aGl~~GD~I~~Ing~~v~--~~~~~l~~~-~~~~~v~l~v~r~g   68 (80)
T cd00990          12 GLGKVTFVRDD----SPADKAGLVAGDELVAVNGWRVD--ALQDRLKEY-QAGDPVELTVFRDD   68 (80)
T ss_pred             CcEEEEEECCC----ChHHHhCCCCCCEEEEECCEEhH--HHHHHHHhc-CCCCEEEEEEEECC
Confidence            36899999876    45667889999999999999998  455443333 24568889998865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10139 serine endoprotease; Provisional

Probab=97.47  E-value=0.00027  Score=77.95  Aligned_cols=61  Identities=30%  Similarity=0.369  Sum_probs=50.1

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccc
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY  134 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~  134 (627)
                      .|++|..|.++|||+++||++||+|++|||.++.++.+...  .+...+..+.|++.|++..+
T Consensus       390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~--~l~~~~~~v~l~v~R~g~~~  450 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRK--VLAAKPAIIALQIVRGNESI  450 (455)
T ss_pred             CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHH--HHHhCCCeEEEEEEECCEEE
Confidence            47999999999999999999999999999999998765443  33333478999999876543

>KOG4371|consensus

Probab=97.45  E-value=0.00048  Score=78.78  Aligned_cols=168  Identities=23%  Similarity=0.375  Sum_probs=111.6

Q ss_pred             CCceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          59 EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        59 ~g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .|.||..++.... .+.++...-.+.-..-.|+.||.++.+||+.+++.-+.+++.+++..++.|.|.|+|.+..+....
T Consensus      1157 ~~~l~~~~a~~~~-~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~ 1235 (1332)
T KOG4371|consen 1157 EGSLGVQIASLSG-RVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQH 1235 (1332)
T ss_pred             CCCCCceeccCcc-ceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccch
Confidence            4789999887522 244444333222223349999999999999999999999999999999999999998776543211


Q ss_pred             ecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeee-
Q psy9827         139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL-  217 (627)
Q Consensus       139 ~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~-  217 (627)
                      -                         ++...+...                         -+.+.|.+. ...++|+.. 
T Consensus      1236 ~-------------------------~s~~~~~~~-------------------------l~~~~~~~~-p~~~~~~~~~ 1264 (1332)
T KOG4371|consen 1236 H-------------------------ASSTSASAP-------------------------LISVMLLKK-PMATLGLSLA 1264 (1332)
T ss_pred             h-------------------------hhhhcccch-------------------------hhhheeeec-cccccccccc
Confidence            0                         000000000                         011222222 122333333 


Q ss_pred             ----CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy9827         218 ----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  281 (627)
Q Consensus       218 ----~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~  281 (627)
                          .+|+++..+...   ..|...+.+++||.+...+|+++.+.+.......++-.-+.+.+.+.|.
T Consensus      1265 ~~~~s~~~~~~~~~~~---~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1265 KRTMSDGIFIRNIAQD---SAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred             ccCcCCceeeeccccc---ccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence                258899888765   2344568999999999999999999988887777776667777777664

>PRK04040 adenylate kinase; Provisional

Probab=97.40  E-value=0.0021  Score=62.41  Aligned_cols=142  Identities=6%  Similarity=0.021  Sum_probs=78.4

Q ss_pred             ceEEEeCcc---HHHHHHHHhhhCCCCccc----------CCC-CCCCCHHHHHHHHhcccccCCcee--hHHhHH--hC
Q psy9827         455 RPVVLFGPV---ADLARDKLLKDFPDKFSA----------PRK-FNFILWATIKDTAMYQSSKEPGMY--QGKDSM--YQ  516 (627)
Q Consensus       455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~----------~~~-~~Fvs~e~f~~~i~~~~~~~~~~Y--~V~~v~--~~  516 (627)
                      +-|+|.|++   |+|+.++|.+..+..|..          +.. ....++++|.++-. ..+  ..+-  +.+.+.  ..
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~-~~~--~~~~~~a~~~i~~~~~   79 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPP-EEQ--KELQREAAERIAEMAG   79 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCCh-hhh--HHHHHHHHHHHHHhhc
Confidence            457888887   999999998887511211          011 11224444443210 000  0011  222222  34


Q ss_pred             CCcEEEecC----------Cce-eccccCCCCceeEEEEcCCC--cccC------CCC--CHHHHHHHHHHHHHHHHHhc
Q psy9827         517 GKDSMYQGK----------ESM-YQGKDSMYQGKDSMYQGKDS--MYQG------KDI--KKEVKIKLFEQSQKLEKVWS  575 (627)
Q Consensus       517 gk~ciLdi~----------~~l-~~~~~~~~P~~~vIFI~pps--l~~~------~~~--~e~~~~~~~~~~~~~e~~~~  575 (627)
                      ++.+|+|-.          ..+ ..--..+.|-.+++|..||+  ++.+      .|.  +++..+..++.+......|+
T Consensus        80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a  159 (188)
T PRK04040         80 EGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYA  159 (188)
T ss_pred             CCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            666888875          112 00002567744477777777  2222      132  34445666655555444444


Q ss_pred             ---CcccEEEECCC--HHHHHHHHHHHHH
Q psy9827         576 ---HVFTGTITLSG--VDVWYRKTRELIE  599 (627)
Q Consensus       576 ---~~fd~vi~n~~--l~~~~~~l~~~i~  599 (627)
                         +.|+++|+|++  +++|+++|.++|.
T Consensus       160 ~~~g~~~~iI~N~d~~~e~a~~~i~~ii~  188 (188)
T PRK04040        160 VLTGATVKIVENREGLLEEAAEEIVEVLR  188 (188)
T ss_pred             HhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence               45999999999  9999999999873

>PRK10942 serine endoprotease; Provisional

Probab=97.36  E-value=0.00046  Score=76.49  Aligned_cols=60  Identities=32%  Similarity=0.475  Sum_probs=50.1

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE  133 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~  133 (627)
                      .|++|..|.++|+|+++||++||+|++|||.++.++.....  .+...+..+.|+|.|++..
T Consensus       408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~dl~~--~l~~~~~~v~l~V~R~g~~  467 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIAELRK--ILDSKPSVLALNIQRGDSS  467 (473)
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHH--HHHhCCCeEEEEEEECCEE
Confidence            47999999999999999999999999999999998755443  4444457899999987654

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=97.29  E-value=0.0018  Score=54.27  Aligned_cols=71  Identities=24%  Similarity=0.354  Sum_probs=46.4

Q ss_pred             CceeEEEEccCCCCEEEEEeCCC--------ChhhhcC--CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPG--------SPASLQG--LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~g--------spA~~aG--L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      |.||..+.-. ..+..|..|.+|        ||-.+.|  +++||.|++|||+++..-... ...+..+.+..|.|+|.+
T Consensus         1 G~LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~-~~lL~~~agk~V~Ltv~~   78 (88)
T PF14685_consen    1 GLLGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANP-YRLLEGKAGKQVLLTVNR   78 (88)
T ss_dssp             -B-SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-H-HHHHHTTTTSEEEEEEE-
T ss_pred             CccceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCH-HHHhcccCCCEEEEEEec
Confidence            3567666554 346788999886        7888888  779999999999999876542 234455788999999997


Q ss_pred             CCc
Q psy9827         130 RRD  132 (627)
Q Consensus       130 ~~~  132 (627)
                      ...
T Consensus        79 ~~~   81 (88)
T PF14685_consen   79 KPG   81 (88)
T ss_dssp             STT
T ss_pred             CCC
Confidence            654

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.27  E-value=0.0013  Score=70.29  Aligned_cols=73  Identities=26%  Similarity=0.454  Sum_probs=54.6

Q ss_pred             ceeEEEEccCCCCEEEEEeC--------CCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEEEEEeCC
Q psy9827          61 SVGIRLTGGNKVGIFVTAVQ--------PGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQNRR  131 (627)
Q Consensus        61 ~lG~~i~g~~~~gi~V~~V~--------~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L~v~r~~  131 (627)
                      .+|+.+..   .|++|....        .+|||+++||++||.|++|||.++.++.+..  ..+. ..+..+.|++.|+.
T Consensus        97 ~iGI~l~t---~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~DL~--~iL~~~~g~~V~LtV~R~G  171 (402)
T TIGR02860        97 SIGVKLNT---KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDDLA--NLINKAGGEKLTLTIERGG  171 (402)
T ss_pred             EEEEEEec---CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHH--HHHHhCCCCeEEEEEEECC
Confidence            68887764   378875542        3699999999999999999999999886654  3333 34789999999877


Q ss_pred             cccceee
Q psy9827         132 DEYEHVV  138 (627)
Q Consensus       132 ~~~~~~v  138 (627)
                      ......+
T Consensus       172 e~~tv~V  178 (402)
T TIGR02860       172 KIIETVI  178 (402)
T ss_pred             EEEEEEE
Confidence            6554444

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG0609|consensus

Probab=97.20  E-value=0.00091  Score=72.33  Aligned_cols=79  Identities=25%  Similarity=0.386  Sum_probs=69.9

Q ss_pred             ceEEEeccC-C-ceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          51 PRFITFQKE-G-SVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        51 ~r~v~l~k~-g-~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      .+.+.+.+. + .+|+++.-.....++|..|..|+.|++.| |+.||.|++|||+++.+..-.+...++..+...+++.+
T Consensus       123 vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfki  202 (542)
T KOG0609|consen  123 VRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKI  202 (542)
T ss_pred             eEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEE
Confidence            466777775 4 89999988655579999999999999999 99999999999999999999999999998889999988


Q ss_pred             Ee
Q psy9827         128 QN  129 (627)
Q Consensus       128 ~r  129 (627)
                      ..
T Consensus       203 iP  204 (542)
T KOG0609|consen  203 IP  204 (542)
T ss_pred             cc
Confidence            73

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.16  E-value=0.0025  Score=58.37  Aligned_cols=71  Identities=25%  Similarity=0.320  Sum_probs=49.2

Q ss_pred             CceeEEEEcc-----CCCCEEEEEeCCCChhhhcCCCC-CCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827          60 GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQGLQP-GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus        60 g~lG~~i~g~-----~~~gi~V~~V~~gspA~~aGL~~-GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      |.||+++.-.     ...+.-|..|.|||||++|||++ .|.|+.+++..+.+.+..... .....+.++.|.|....
T Consensus        26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l~~~-v~~~~~~~l~L~Vyns~  102 (138)
T PF04495_consen   26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDLFEL-VEANENKPLQLYVYNSK  102 (138)
T ss_dssp             SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHHHHH-HHHTTTS-EEEEEEETT
T ss_pred             CCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHHHHH-HHHcCCCcEEEEEEECC
Confidence            4689888764     24578899999999999999998 699999999999876655432 33466789999987543

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG3651|consensus

Probab=97.15  E-value=0.0015  Score=65.22  Aligned_cols=76  Identities=21%  Similarity=0.410  Sum_probs=62.1

Q ss_pred             EEEEeecCCCCCeeeeeCC------cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         201 RVQLSKSRKKDDFGIILGN------KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       201 ~V~L~k~~~~~~~gi~~~~------gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      +|+|.|... .-.||.+|+      .+||-.|..+   .+|+..|.++.||.|++|||.++.|.+--++.++++-+.+.|
T Consensus         7 ~v~ltKD~~-nliGISIGGGapyCPClYiVQvFD~---tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV   82 (429)
T KOG3651|consen    7 TVELTKDEK-NLIGISIGGGAPYCPCLYIVQVFDK---TPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEV   82 (429)
T ss_pred             cEEEeeccc-cceeEEecCCCCcCCeEEEEEeccC---CchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccce
Confidence            566777543 335666653      4899999887   467889999999999999999999999999999999999988


Q ss_pred             EEEEEe
Q psy9827         275 SLTIRR  280 (627)
Q Consensus       275 ~l~V~r  280 (627)
                      .+..-.
T Consensus        83 ~IhyNK   88 (429)
T KOG3651|consen   83 KIHYNK   88 (429)
T ss_pred             EEEehh
Confidence            887643

>KOG3129|consensus

Probab=97.08  E-value=0.002  Score=61.45  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=53.7

Q ss_pred             CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHH--HhcCCCeeEEEEEeCCcccceeeecC
Q psy9827          73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLF--LLSLQDQIHLIVQNRRDEYEHVVASQ  141 (627)
Q Consensus        73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~--l~~~g~~V~L~v~r~~~~~~~~v~~~  141 (627)
                      -++|.+|.|+|||+.+||+.||.|+.+..+.-.+...++....  ....+..+.++|.|.+......+++.
T Consensus       140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~  210 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPK  210 (231)
T ss_pred             eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcc
Confidence            4789999999999999999999999998887776664443333  33567889999998877666555443

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.01  E-value=0.0018  Score=68.71  Aligned_cols=61  Identities=28%  Similarity=0.384  Sum_probs=50.8

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~  283 (627)
                      .+++|..|.++    ++|..+||++||+|++|||.++.+++..++...+.. .+..+.|++.|++.
T Consensus        62 ~~~~V~~V~~~----spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~  123 (334)
T TIGR00225        62 GEIVIVSPFEG----SPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK  123 (334)
T ss_pred             CEEEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence            46899999876    466678899999999999999998777888888865 56689999998753

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=96.96  E-value=0.0016  Score=66.19  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  284 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~~  284 (627)
                      .|+.|..+.++    +++..+||++||+|++|||+++.  +.+++..++.+.  +..++|+|.|++..
T Consensus       191 ~G~~v~~v~~~----s~a~~aGLr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       191 EGYRLNPGKDP----SLFYKSGLQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             eEEEEEecCCC----CHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence            37788888665    56778999999999999999999  899999999873  45899999998653

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=96.88  E-value=0.0026  Score=68.91  Aligned_cols=59  Identities=25%  Similarity=0.404  Sum_probs=50.2

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREV  282 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~  282 (627)
                      +++|..|.++    ++|..+||++||+|++|||+++.+++..++..+|+. .+..+.|+|.|++
T Consensus       103 g~~V~~V~~~----SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049        103 GLVVVAPAPG----GPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             cEEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            6889999876    456677899999999999999998888898888875 4568999998864

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.84  E-value=0.0017  Score=70.25  Aligned_cols=71  Identities=30%  Similarity=0.395  Sum_probs=53.3

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~  139 (627)
                      .+||+.+... ..+..|+.|.+||||++|||.+||.|++|||.+-+        ..-.+++..+.+.+.+.+...+..++
T Consensus       451 ~~LGl~v~~~-~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~--------l~~~~~~d~i~v~~~~~~~L~e~~v~  521 (558)
T COG3975         451 YYLGLKVKSE-GGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQ--------LDRYKVNDKIQVHVFREGRLREFLVK  521 (558)
T ss_pred             cccceEeccc-CCeeEEEecCCCChhHhccCCCccEEEEEcCcccc--------ccccccccceEEEEccCCceEEeecc
Confidence            3788887655 34689999999999999999999999999999111        11125678888888876665554443

>KOG1320|consensus

Probab=96.80  E-value=0.018  Score=62.67  Aligned_cols=58  Identities=26%  Similarity=0.404  Sum_probs=46.8

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC--eEEEEEEeCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREV  282 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~--~v~l~V~r~~  282 (627)
                      .+++|..|.+++    .+..+++.+||+|+.|||.++.  +..++..+++.+..  .+.+...+..
T Consensus       398 q~v~is~Vlp~~----~~~~~~~~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~  457 (473)
T KOG1320|consen  398 QLVLVSQVLPGS----INGGYGLKPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSA  457 (473)
T ss_pred             eEEEEEEeccCC----CcccccccCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCc
Confidence            478999999874    4456889999999999999999  78999999998764  6666665543

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=96.79  E-value=0.0026  Score=67.92  Aligned_cols=65  Identities=18%  Similarity=0.200  Sum_probs=53.2

Q ss_pred             eeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         213 FGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       213 ~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      ||+....|++|..|.++    +++..++|++||+|++|||+++.  +.+++...+..  .++.+.|+|.|++.
T Consensus       272 lgl~~~~Gv~V~~V~~~----spA~~aGL~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~  338 (351)
T TIGR02038       272 LGLPDLRGIVITGVDPN----GPAARAGILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGK  338 (351)
T ss_pred             cCCCccccceEeecCCC----ChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            44443468999999876    45667899999999999999999  89999888875  46789999998653

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=96.61  E-value=0.006  Score=66.22  Aligned_cols=59  Identities=31%  Similarity=0.442  Sum_probs=51.2

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRRE  281 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~  281 (627)
                      .++.|.++.++    ++|..++|++||+|+.|||.++.+++.++++..|+.. +..|+|++.|.
T Consensus       112 ~~~~V~s~~~~----~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793         112 GGVKVVSPIDG----SPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             CCcEEEecCCC----ChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            46788888776    4666677999999999999999999999999999975 55899999997

>PRK10898 serine endoprotease; Provisional

Probab=96.49  E-value=0.0069  Score=64.74  Aligned_cols=60  Identities=18%  Similarity=0.292  Sum_probs=50.2

Q ss_pred             CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       218 ~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      ..|++|..|.++    +++..++|++||+|++|||+++.  +.+++...+..  .++.+.|.+.|++.
T Consensus       278 ~~Gv~V~~V~~~----spA~~aGL~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~  339 (353)
T PRK10898        278 LQGIVVNEVSPD----GPAAKAGIQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDK  339 (353)
T ss_pred             CCeEEEEEECCC----ChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            368999999876    46667899999999999999999  88888888765  45689999998653

>KOG3542|consensus

Probab=96.48  E-value=0.0032  Score=69.11  Aligned_cols=73  Identities=25%  Similarity=0.390  Sum_probs=58.5

Q ss_pred             CCCccEEEEEeecC--CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         195 PEPQTLRVQLSKSR--KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       195 ~~~~~~~V~L~k~~--~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      .......|.|.|..  .+..|.+.+|    .||||..|.||    +.|+..||+.||.|++|||++..+.+...+..+|+
T Consensus       532 aKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pg----skAa~~GlKRgDqilEVNgQnfenis~~KA~eiLr  607 (1283)
T KOG3542|consen  532 AKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPG----SKAAREGLKRGDQILEVNGQNFENISAKKAEEILR  607 (1283)
T ss_pred             hcccceeEEEecccccCCceeEeccCccccceeEEeeecCC----chHHHhhhhhhhhhhhccccchhhhhHHHHHHHhc
Confidence            34456788888854  3445666665    48999999987    45567789999999999999999999999999998


Q ss_pred             cCC
Q psy9827         269 SSK  271 (627)
Q Consensus       269 ~~~  271 (627)
                      +..
T Consensus       608 nnt  610 (1283)
T KOG3542|consen  608 NNT  610 (1283)
T ss_pred             CCc
Confidence            754

>KOG0606|consensus

Probab=96.44  E-value=0.0059  Score=71.30  Aligned_cols=75  Identities=31%  Similarity=0.402  Sum_probs=63.2

Q ss_pred             EEeccCC-ceeEEEEcc----CCC-----CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          54 ITFQKEG-SVGIRLTGG----NKV-----GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        54 v~l~k~g-~lG~~i~g~----~~~-----gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      |.+.+.+ +|||++...    ++.     ...|..|.+||||..+|++.||.|+.|||..+.+..|.+++.++...+..|
T Consensus       630 I~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v  709 (1205)
T KOG0606|consen  630 ITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKV  709 (1205)
T ss_pred             eeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCee
Confidence            5556655 799877652    122     367899999999999999999999999999999999999999999889999


Q ss_pred             EEEEE
Q psy9827         124 HLIVQ  128 (627)
Q Consensus       124 ~L~v~  128 (627)
                      ++.+.
T Consensus       710 ~~~tt  714 (1205)
T KOG0606|consen  710 TLRTT  714 (1205)
T ss_pred             EEEee
Confidence            88775

>KOG3938|consensus

Probab=96.44  E-value=0.0053  Score=60.51  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=63.6

Q ss_pred             EEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCeeEEEEEe
Q psy9827          54 ITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL--SLQDQIHLIVQN  129 (627)
Q Consensus        54 v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~--~~g~~V~L~v~r  129 (627)
                      +.+.|. ..||++|......-.||..|.+||.-.+-. +++||.|-+|||.++.++-|.+++.+|+  ..+...+|.+..
T Consensus       130 v~v~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLie  209 (334)
T KOG3938|consen  130 VEVVKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIE  209 (334)
T ss_pred             EEEEecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeec
Confidence            334444 378998887655568999999999998876 9999999999999999999999999998  556777777664


Q ss_pred             CC
Q psy9827         130 RR  131 (627)
Q Consensus       130 ~~  131 (627)
                      .+
T Consensus       210 Pk  211 (334)
T KOG3938|consen  210 PK  211 (334)
T ss_pred             cc
Confidence            43

>PRK11186 carboxy-terminal protease; Provisional

Probab=96.43  E-value=0.0069  Score=69.37  Aligned_cols=60  Identities=15%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCc-----eeCCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINN-----HPTDGMSVKEARKLIDSS-KEKLSLTIRRE  281 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg-----~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~  281 (627)
                      .+++|.+|.+|+   +|+..++|++||+|++||+     .++.+++.++++.+|+.. +..|.|+|.|+
T Consensus       255 ~~~~V~~vipGs---PA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        255 DYTVINSLVAGG---PAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             CeEEEEEccCCC---hHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            468899999884   3444459999999999994     366788999999999874 55899999884

>KOG4407|consensus

Probab=96.37  E-value=0.0034  Score=73.42  Aligned_cols=134  Identities=16%  Similarity=0.181  Sum_probs=97.3

Q ss_pred             ccCCCCceEEEeccC-CceeEEEEccC---------------------------CCCEEEEEeCCCChhhhcCCCCCCEE
Q psy9827          45 FFVEPDPRFITFQKE-GSVGIRLTGGN---------------------------KVGIFVTAVQPGSPASLQGLQPGDKI   96 (627)
Q Consensus        45 ~~~~~~~r~v~l~k~-g~lG~~i~g~~---------------------------~~gi~V~~V~~gspA~~aGL~~GD~I   96 (627)
                      .|.++.+.+|.+++. .||||+|.-.-                           ...+++-.+..++++..+|+..||.|
T Consensus        41 a~S~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v  120 (1973)
T KOG4407|consen   41 ASSIQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGV  120 (1973)
T ss_pred             hccCCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccce
Confidence            456788888888876 59999987530                           01256666777888888888888888


Q ss_pred             EEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhh
Q psy9827          97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRD  176 (627)
Q Consensus        97 l~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~  176 (627)
                      ..|||..+.+.+. .....++..                                                         
T Consensus       121 ~~itG~e~~~~TS-~~~~~vk~~---------------------------------------------------------  142 (1973)
T KOG4407|consen  121 AGITGLEPTSPTS-LPPYQVKAM---------------------------------------------------------  142 (1973)
T ss_pred             eeecccccCCCcc-ccHHHHhhh---------------------------------------------------------
Confidence            8888888766652 111111111                                                         


Q ss_pred             cCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCC
Q psy9827         177 SGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTD  256 (627)
Q Consensus       177 sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~  256 (627)
                                                                .-+||.+|.+.+    ++--+.|+.||.++.||+.++.
T Consensus       143 ------------------------------------------eT~~~~eV~~n~----~~~~a~LQ~~~~V~~v~~q~~A  176 (1973)
T KOG4407|consen  143 ------------------------------------------ETIFIKEVQANG----PAHYANLQTGDRVLMVNNQPIA  176 (1973)
T ss_pred             ------------------------------------------hhhhhhhhccCC----hhHHHhhhccceeEEeecCccc
Confidence                                                      123566676552    3445789999999999999999


Q ss_pred             CCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy9827         257 GMSVKEARKLIDSSKEKLSLTIRREV  282 (627)
Q Consensus       257 ~~s~~e~~~~l~~~~~~v~l~V~r~~  282 (627)
                      ++-..+++.++++....+++.|.+-.
T Consensus       177 ~i~~s~~~S~~~qt~~~~~~~~~P~~  202 (1973)
T KOG4407|consen  177 GIAYSTIVSMIKQTPAVLTLHVVPKE  202 (1973)
T ss_pred             chhhhhhhhhhccCCCCCCceecccc
Confidence            99999999999999988888887643

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.36  E-value=0.008  Score=57.47  Aligned_cols=140  Identities=9%  Similarity=-0.105  Sum_probs=75.2

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCcccCCCC-CCC-CHHHHHH---HHhccc----c---cCCcee-----hHHhH
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKF-NFI-LWATIKD---TAMYQS----S---KEPGMY-----QGKDS  513 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~-~Fv-s~e~f~~---~i~~~~----~---~~~~~Y-----~V~~v  513 (627)
                      .+.|+|.||+   |+|+.+.|.+..+..|..--.+ +|. ....+..   .+....    .   ..++.|     .+...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~   81 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM   81 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence            4679999999   9999999998876554432222 211 1111111   111111    0   112455     78888


Q ss_pred             HhCCCcEEEecC-C-ce-ecc-ccCC--CCceeEEEEcCCC--cccC--CCCCHHHHHHHHHHHHHHHHHh-cCcccEEE
Q psy9827         514 MYQGKDSMYQGK-E-SM-YQG-KDSM--YQGKDSMYQGKDS--MYQG--KDIKKEVKIKLFEQSQKLEKVW-SHVFTGTI  582 (627)
Q Consensus       514 ~~~gk~ciLdi~-~-~l-~~~-~~~~--~P~~~vIFI~pps--l~~~--~~~~e~~~~~~~~~~~~~e~~~-~~~fd~vi  582 (627)
                      +++|++||+|.. . .- ... -..+  .|+ ..||+.+|.  +.++  +|...  ...+... +. +..+ ...||++|
T Consensus        82 l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~-~~v~l~~~~~~l~~R~~~R~~~--~~~~~~~-~~-~~~~~~~~~dl~i  156 (175)
T cd00227          82 ARAGANVIADDVFLGRAALQDCWRSFVGLDV-LWVGVRCPGEVAEGRETARGDR--VPGQARK-QA-RVVHAGVEYDLEV  156 (175)
T ss_pred             HhCCCcEEEeeeccCCHHHHHHHHHhcCCCE-EEEEEECCHHHHHHHHHhcCCc--cchHHHH-HH-HHhcCCCcceEEE
Confidence            999999999976 2 21 100 0012  232 268888775  2222  34321  1122221 11 2222 35689988


Q ss_pred             ECC--CHHHHHHHHHHHH
Q psy9827         583 TLS--GVDVWYRKTRELI  598 (627)
Q Consensus       583 ~n~--~l~~~~~~l~~~i  598 (627)
                      .++  +.+++.++|.+.|
T Consensus       157 Dts~~s~~e~a~~i~~~l  174 (175)
T cd00227         157 DTTHKTPIECARAIAARV  174 (175)
T ss_pred             ECCCCCHHHHHHHHHHhc
Confidence            876  6888888887654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>KOG3605|consensus

Probab=96.34  E-value=0.0032  Score=69.09  Aligned_cols=59  Identities=22%  Similarity=0.445  Sum_probs=51.2

Q ss_pred             ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .|||+++.|     +|.++..|+.|++.|+++|.+|++|||.+|....|+..+.+|...=..|.
T Consensus       750 QLGFSVQNG-----iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIh  808 (829)
T KOG3605|consen  750 QLGFSVQNG-----IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIH  808 (829)
T ss_pred             hccceeeCc-----EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhh
Confidence            699999866     47788999999999999999999999999999999999998885533443

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.32  E-value=0.012  Score=63.08  Aligned_cols=73  Identities=25%  Similarity=0.365  Sum_probs=56.1

Q ss_pred             CCCCeeeeeC-CcEEEEEecc----CCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Q psy9827         209 KKDDFGIILG-NKIFVKEVTH----RLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV  282 (627)
Q Consensus       209 ~~~~~gi~~~-~gi~V~~V~~----g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~~  282 (627)
                      .+..+|+.+. .|++|.....    ++...++|+.++|++||+|++|||.++.  +.+|+.++++.. +..+.|.|.|++
T Consensus        94 gG~~iGI~l~t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~G  171 (402)
T TIGR02860        94 GGQSIGVKLNTKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGG  171 (402)
T ss_pred             CCEEEEEEEecCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECC
Confidence            3556777774 6888755432    1122356777899999999999999999  899999999875 468999999976


Q ss_pred             C
Q psy9827         283 P  283 (627)
Q Consensus       283 ~  283 (627)
                      .
T Consensus       172 e  172 (402)
T TIGR02860       172 K  172 (402)
T ss_pred             E
Confidence            4

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.20  E-value=0.016  Score=48.58  Aligned_cols=63  Identities=19%  Similarity=0.303  Sum_probs=38.4

Q ss_pred             CcEEEEEeccCCCCCCCCCC------CCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGT------HQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~------~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~  283 (627)
                      .+..|.+|.+|-++...+++      -.+++||.|++|||+++.  .......+|.+ ++..+.|+|.+...
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCCC
Confidence            45678899887443332221      367899999999999998  66677788886 55689999988653

>KOG1421|consensus

Probab=96.15  E-value=0.056  Score=60.12  Aligned_cols=142  Identities=15%  Similarity=0.177  Sum_probs=87.8

Q ss_pred             EEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCccccccCCe
Q psy9827          74 IFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDR  153 (627)
Q Consensus        74 i~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~  153 (627)
                      .+|+.|.++-+-  . |..||+|++|||+.+..+.+++-..       .+...+.|.+.+.+..++.-+..     ..++
T Consensus       773 ~~ishv~~~~~k--i-l~~gdiilsvngk~itr~~dl~d~~-------eid~~ilrdg~~~~ikipt~p~~-----et~r  837 (955)
T KOG1421|consen  773 YVISHVRPLLHK--I-LGVGDIILSVNGKMITRLSDLHDFE-------EIDAVILRDGIEMEIKIPTYPEY-----ETSR  837 (955)
T ss_pred             EEEEeeccCccc--c-cccccEEEEecCeEEeeehhhhhhh-------hhheeeeecCcEEEEEecccccc-----ccce
Confidence            578888887543  3 9999999999999999998877432       55566666665554444322111     1111


Q ss_pred             eeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCC
Q psy9827         154 IMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNN  233 (627)
Q Consensus       154 i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~  233 (627)
                      .+---|..+. .+|..+.+.+-.                                        +..|+||+..-.|+   
T Consensus       838 ~vi~~gailq-~ph~av~~q~ed----------------------------------------lp~gvyvt~rg~gs---  873 (955)
T KOG1421|consen  838 AVIWMGAILQ-PPHSAVFEQVED----------------------------------------LPEGVYVTSRGYGS---  873 (955)
T ss_pred             EEEEEecccc-CchHHHHHHHhc----------------------------------------cCCceEEeecccCC---
Confidence            1111111111 122221111110                                        11478898887663   


Q ss_pred             CCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEE
Q psy9827         234 ASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  278 (627)
Q Consensus       234 ~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V  278 (627)
                       +|-. .|+.-.-|.+|||+.+.  +.++++.++......-...|
T Consensus       874 -palq-~l~aa~fitavng~~t~--~lddf~~~~~~ipdnsyv~v  914 (955)
T KOG1421|consen  874 -PALQ-MLRAAHFITAVNGHDTN--TLDDFYHMLLEIPDNSYVQV  914 (955)
T ss_pred             -hhHh-hcchheeEEEecccccC--cHHHHHHHHhhCCCCceEEE
Confidence             4433 79999999999999998  99999999998765444444

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=96.07  E-value=0.024  Score=57.73  Aligned_cols=60  Identities=25%  Similarity=0.353  Sum_probs=45.7

Q ss_pred             EeCCCChh---hhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827          78 AVQPGSPA---SLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV  137 (627)
Q Consensus        78 ~V~~gspA---~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~  137 (627)
                      .|.||..+   .++||++||.+++|||.++.+..+.............++|+|.|++..+...
T Consensus       210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~  272 (276)
T PRK09681        210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDIS  272 (276)
T ss_pred             EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEE
Confidence            45677543   5799999999999999999877655544444466789999999988765544

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=95.93  E-value=0.0092  Score=60.68  Aligned_cols=58  Identities=17%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             EeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCCCC
Q psy9827         225 EVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPRP  285 (627)
Q Consensus       225 ~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~~~  285 (627)
                      +|.|| .+...-...||++||++++|||.++.  +.+++.++++..  ...++|+|.|++...
T Consensus       210 rl~Pg-kd~~lF~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq~~  269 (276)
T PRK09681        210 AVKPG-ADRSLFDASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGARH  269 (276)
T ss_pred             EECCC-CcHHHHHHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCEEE
Confidence            45565 22234556899999999999999999  889999999874  458999999988754

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=95.85  E-value=0.0015  Score=49.84  Aligned_cols=51  Identities=14%  Similarity=0.053  Sum_probs=34.3

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccc-cCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSL-SQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~-~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      |+||.++|.+        ..+.++.|.+||+++| + .+++.    .||.+..   +   ...|+||+...
T Consensus         1 ~~~a~~d~~~--------~~~~~Ls~~~Gd~i~v-~~~~~~~----~ww~~~~---~---g~~G~~P~~~v   52 (55)
T PF07653_consen    1 YYRAIFDYVA--------EDPDELSFKKGDVIEV-LGEKDDD----GWWLGEN---N---GRRGWFPSSYV   52 (55)
T ss_dssp             EEEESSSBES--------SSTTB-EB-TTEEEEE-EEEECST----SEEEEEE---T---TEEEEEEGGGE
T ss_pred             CEEEeEEECC--------CCCCceEEecCCEEEE-EEeecCC----CEEEEEE---C---CcEEEEcHHHE
Confidence            5677777722        1234567779999999 6 44443    8999976   2   37799999764

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=95.69  E-value=0.0034  Score=46.33  Aligned_cols=37  Identities=14%  Similarity=0.198  Sum_probs=28.2

Q ss_pred             CCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccC
Q psy9827         336 PRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPN  381 (627)
Q Consensus       336 ~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs  381 (627)
                      .++.|..||++.| +.+.|.    .||.++....    .+.|+||+
T Consensus        12 ~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~~~----~~~G~vP~   48 (48)
T PF00018_consen   12 DELSFKKGDIIEV-LEKSDD----GWWKVRNEST----GKEGWVPS   48 (48)
T ss_dssp             TBSEB-TTEEEEE-EEESSS----SEEEEEETTT----TEEEEEEG
T ss_pred             CEEeEECCCEEEE-EEecCC----CEEEEEECCC----CcEEEeeC
Confidence            3556779999999 666664    7999988753    48999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG3532|consensus

Probab=95.34  E-value=0.051  Score=60.20  Aligned_cols=67  Identities=21%  Similarity=0.439  Sum_probs=52.9

Q ss_pred             ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      .+|+..-......+-|..|.++++|.++.+++||.+++|||+++..  ..++...++.....+...+.+
T Consensus       387 ~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  387 PIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             ceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence            6787665554566889999999999999999999999999999974  456666777665566666554

>KOG4792|consensus

Probab=95.30  E-value=0.0084  Score=57.81  Aligned_cols=59  Identities=12%  Similarity=0.064  Sum_probs=42.9

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHH
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEEL  388 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~  388 (627)
                      ...|||++|++   ...+..     ++-|.+|+||.| +.+..+    .||.|+...     ...|+||-..-+..+
T Consensus       123 ~~~~vr~~fdF---~G~dee-----DLPFkkGeiL~I-~~K~ee----qWW~Arns~-----Gk~GmIPvpYVe~~~  181 (293)
T KOG4792|consen  123 EAEYVRALFDF---NGNDEE-----DLPFKKGEILRI-RDKPEE----QWWNARNSE-----GKRGMIPVPYVEKYR  181 (293)
T ss_pred             hhhheeeeecc---CCCccc-----cCCcccCcEEEE-ecCcHH----HhhhhhccC-----CcccceechHHHhhh
Confidence            36899999999   332222     234669999999 776665    799997532     589999999776654

>PF12812 PDZ_1: PDZ-like domain

Probab=94.99  E-value=0.14  Score=42.04  Aligned_cols=74  Identities=18%  Similarity=0.312  Sum_probs=54.0

Q ss_pred             CCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCC
Q psy9827         151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRL  230 (627)
Q Consensus       151 ~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~  230 (627)
                      .++.+.+.|..+.+++++.+.+..-..                                        + ++|+ ....  
T Consensus         4 p~r~v~~~Ga~f~~Ls~q~aR~~~~~~----------------------------------------~-gv~v-~~~~--   39 (78)
T PF12812_consen    4 PSRFVEVCGAVFHDLSYQQARQYGIPV----------------------------------------G-GVYV-AVSG--   39 (78)
T ss_pred             CCEEEEEcCeecccCCHHHHHHhCCCC----------------------------------------C-EEEE-EecC--
Confidence            367888899999999998765542211                                        1 2233 3322  


Q ss_pred             CCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         231 DNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       231 ~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                        ++.+..+++..|-+|.+|||+++.  +++++.+.+++.++
T Consensus        40 --g~~~~~~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd   77 (78)
T PF12812_consen   40 --GSLAFAGGISKGFIITSVNGKPTP--DLDDFIKVVKKIPD   77 (78)
T ss_pred             --CChhhhCCCCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence              455556679999999999999999  99999999987653

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=94.96  E-value=0.063  Score=54.86  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=50.8

Q ss_pred             CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeC
Q psy9827          72 VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNR  130 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~  130 (627)
                      .|++|..|..++||.  | |..||.|++|||.++.+.........-+..|+.|++.+.|.
T Consensus       130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~  187 (342)
T COG3480         130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERH  187 (342)
T ss_pred             eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEec
Confidence            489999999999985  6 99999999999999998877777777779999999999973

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=94.96  E-value=0.026  Score=60.86  Aligned_cols=52  Identities=19%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             EEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEE-eCC
Q psy9827         223 VKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR-REV  282 (627)
Q Consensus       223 V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~-r~~  282 (627)
                      |..|.++    ++|..+||++||+|++|||+.+.  ++.++...+.  ...+.+.|. |++
T Consensus         2 I~~V~pg----SpAe~AGLe~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~rdG   54 (433)
T TIGR03279         2 ISAVLPG----SIAEELGFEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLDANG   54 (433)
T ss_pred             cCCcCCC----CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEcCCC
Confidence            4566665    56778899999999999999999  8889877774  356888886 443

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG3834|consensus

Probab=94.85  E-value=0.26  Score=52.31  Aligned_cols=61  Identities=31%  Similarity=0.452  Sum_probs=47.1

Q ss_pred             ccCCCCEEEEEeCCCChhhhcCCCC-CCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          68 GGNKVGIFVTAVQPGSPASLQGLQP-GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        68 g~~~~gi~V~~V~~gspA~~aGL~~-GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      ++...|--|.+|+.+|+|+++||.+ =|.|++|||..+..-+ +....+++..-+.|.|+|..
T Consensus        11 ~ggteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~dn-d~Lk~llk~~sekVkltv~n   72 (462)
T KOG3834|consen   11 GGGTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKDN-DTLKALLKANSEKVKLTVYN   72 (462)
T ss_pred             cCCceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCch-HHHHHHHHhcccceEEEEEe
Confidence            4445577789999999999999776 5999999999997653 44556666666668888873

>KOG3938|consensus

Probab=94.81  E-value=0.057  Score=53.48  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=60.6

Q ss_pred             EEEEEeecCCCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEE
Q psy9827         200 LRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLS  275 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~  275 (627)
                      ..|.++|+....|+.|+..  .-.||++|.+|   +...+-..+++||.|-+|||+++-|+.|-|+..+|+..  +...+
T Consensus       128 kEv~v~KsedalGlTITDNG~GyAFIKrIkeg---svidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ft  204 (334)
T KOG3938|consen  128 KEVEVVKSEDALGLTITDNGAGYAFIKRIKEG---SVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFT  204 (334)
T ss_pred             eeEEEEecccccceEEeeCCcceeeeEeecCC---chhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeE
Confidence            4566677655444444442  23799999888   35555567999999999999999999999999999974  56788


Q ss_pred             EEEEeCC
Q psy9827         276 LTIRREV  282 (627)
Q Consensus       276 l~V~r~~  282 (627)
                      |.+.-+.
T Consensus       205 lrLiePk  211 (334)
T KOG3938|consen  205 LRLIEPK  211 (334)
T ss_pred             EEeeccc
Confidence            8776653

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=94.74  E-value=0.12  Score=50.78  Aligned_cols=59  Identities=20%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             EeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCCCCC
Q psy9827         225 EVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPRPT  286 (627)
Q Consensus       225 ~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~~~~  286 (627)
                      ++.|| .++++-...||+.||+.++||+.+++  +.+++..+|+..  -..+.|+|.|++.+..
T Consensus       210 r~~pg-kd~slF~~sglq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rhd  270 (275)
T COG3031         210 RFEPG-KDGSLFYKSGLQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRHD  270 (275)
T ss_pred             EecCC-CCcchhhhhcCCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCccce
Confidence            34555 44566667899999999999999999  999999999974  4689999999887653

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=93.91  E-value=0.021  Score=42.32  Aligned_cols=36  Identities=14%  Similarity=0.127  Sum_probs=26.3

Q ss_pred             CCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         337 RAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       337 ~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ++.|..||++.| +.+.+.    .||.++.   +   .+.|++|+..
T Consensus        12 ELs~~~Gd~i~v-~~~~~~----~W~~g~~---~---g~~G~~P~~y   47 (49)
T PF14604_consen   12 ELSFKKGDVITV-LEKSDD----GWWYGRN---T---GRTGLFPANY   47 (49)
T ss_dssp             B-EB-TTEEEEE-EEESST----SEEEEEE---T---TEEEEEEGGG
T ss_pred             EeeEcCCCEEEE-EEeCCC----CEEEEEE---C---CEEEEECHHh
Confidence            567889999999 555443    8999974   2   4999999864

...

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=93.71  E-value=0.14  Score=50.29  Aligned_cols=54  Identities=26%  Similarity=0.326  Sum_probs=43.6

Q ss_pred             CCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827          80 QPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE  133 (627)
Q Consensus        80 ~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~  133 (627)
                      .+++.-++.||+.||+.+++|+.++.+...+.....+...-..+.|+|.|++..
T Consensus       215 kd~slF~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~r  268 (275)
T COG3031         215 KDGSLFYKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGKR  268 (275)
T ss_pred             CCcchhhhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCcc
Confidence            556777899999999999999999988766665555556667899999987754

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=93.68  E-value=0.62  Score=45.30  Aligned_cols=86  Identities=6%  Similarity=0.043  Sum_probs=51.7

Q ss_pred             hHHhHHhCC---CcEEEecC---CceeccccCCCCceeEEEEcCCC------cccCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy9827         509 QGKDSMYQG---KDSMYQGK---ESMYQGKDSMYQGKDSMYQGKDS------MYQGKDIKKEVKIKLFEQSQKLEKVWSH  576 (627)
Q Consensus       509 ~V~~v~~~g---k~ciLdi~---~~l~~~~~~~~P~~~vIFI~pps------l~~~~~~~e~~~~~~~~~~~~~e~~~~~  576 (627)
                      .+.+.+++.   +.+++|+-   +.-..   .++-.  +|+|..|.      +.++.+.+++++.+++.. +.-..+...
T Consensus        95 ~~~~~~~~~~~~~~vv~e~pll~e~~~~---~~~D~--vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~~-Q~~~~~~~~  168 (194)
T PRK00081         95 EILEQLQEAESSPYVVLDIPLLFENGLE---KLVDR--VLVVDAPPETQLERLMARDGLSEEEAEAIIAS-QMPREEKLA  168 (194)
T ss_pred             HHHHHHHHcccCCEEEEEehHhhcCCch---hhCCe--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH-hCCHHHHHH
Confidence            444444433   67888887   32111   23345  77777665      112234556656665553 222334456


Q ss_pred             cccEEEECC-CHHHHHHHHHHHHHh
Q psy9827         577 VFTGTITLS-GVDVWYRKTRELIEK  600 (627)
Q Consensus       577 ~fd~vi~n~-~l~~~~~~l~~~i~~  600 (627)
                      ..|+||.|+ ++++.+.++..++.+
T Consensus       169 ~ad~vI~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        169 RADDVIDNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             hCCEEEECCCCHHHHHHHHHHHHHh
Confidence            679999997 899999999998764

>KOG1738|consensus

Probab=93.67  E-value=0.097  Score=58.02  Aligned_cols=72  Identities=19%  Similarity=0.296  Sum_probs=62.5

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      .++|+-|...-++.++|+.+.++|||...+ |..||.+++||+..+.+|+....+..+.....-|.+++..++
T Consensus       213 eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp  285 (638)
T KOG1738|consen  213 EGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP  285 (638)
T ss_pred             cCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence            489998887666678999999999999988 999999999999999999999999988877767777776544

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=92.66  E-value=0.39  Score=49.29  Aligned_cols=60  Identities=18%  Similarity=0.356  Sum_probs=48.8

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPRP  285 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~~~  285 (627)
                      .|+++..|..++    + ..+-|+.||.|++|||+++.  +.+|+...+++  .++.|++...|....+
T Consensus       130 ~gvyv~~v~~~~----~-~~gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~  191 (342)
T COG3480         130 AGVYVLSVIDNS----P-FKGKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHNETP  191 (342)
T ss_pred             eeEEEEEccCCc----c-hhceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEeccCCC
Confidence            378888886552    2 24679999999999999999  99999999986  5679999999855544

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.51  E-value=0.31  Score=51.99  Aligned_cols=65  Identities=17%  Similarity=0.317  Sum_probs=53.7

Q ss_pred             eeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827         213 FGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  283 (627)
Q Consensus       213 ~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~  283 (627)
                      +|+....|++|..|.++    +++..++++.||+|+++||..+.  +..++...+...  +..+.+.+.|++.
T Consensus       264 ~g~~~~~G~~V~~v~~~----spa~~agi~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~  330 (347)
T COG0265         264 LGLPVAAGAVVLGVLPG----SPAAKAGIKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGK  330 (347)
T ss_pred             cCCCCCCceEEEecCCC----ChHHHcCCCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCE
Confidence            55555678999999876    56777899999999999999999  888888888763  5689999999844

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=92.26  E-value=0.31  Score=49.19  Aligned_cols=85  Identities=9%  Similarity=-0.007  Sum_probs=56.4

Q ss_pred             CcEEEecC---Cc-eeccccCCCCceeEEEEcCCCc---c---cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC--
Q psy9827         518 KDSMYQGK---ES-MYQGKDSMYQGKDSMYQGKDSM---Y---QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS--  585 (627)
Q Consensus       518 k~ciLdi~---~~-l~~~~~~~~P~~~vIFI~ppsl---~---~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~--  585 (627)
                      ..|++|+-   +. +..   .+.-.  +|||..|.-   +   ++...+++++++++.. +.-..+.....|+||.|+  
T Consensus       118 ~~vv~evPLL~E~~~~~---~~~D~--iv~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~-Q~~~~ek~~~aD~VI~N~~~  191 (244)
T PTZ00451        118 LIVVLDAPTLFETKTFT---YFVSA--SVVVSCSEERQIERLRKRNGFSKEEALQRIGS-QMPLEEKRRLADYIIENDSA  191 (244)
T ss_pred             CEEEEEechhhccCchh---hcCCe--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHh-CCCHHHHHHhCCEEEECCCC
Confidence            48999987   43 222   24456  888877761   1   1134466667777655 333445677899999998  


Q ss_pred             -CHHHHHHHHHHHHHhhC-CCCeeE
Q psy9827         586 -GVDVWYRKTRELIEKQQ-SSPVWI  608 (627)
Q Consensus       586 -~l~~~~~~l~~~i~~~~-~~~~Wv  608 (627)
                       ++++...++.+++.... ..|.|+
T Consensus       192 g~~~~L~~~v~~~~~~~~~~~~~~~  216 (244)
T PTZ00451        192 DDLDELRGSVCDCVAWMSRQSNKRL  216 (244)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCChHH
Confidence             89999999999987643 335543

>PRK06762 hypothetical protein; Provisional

Probab=90.92  E-value=1.4  Score=41.27  Aligned_cols=133  Identities=6%  Similarity=-0.011  Sum_probs=69.4

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCcee------hHHhHHhCCCcEEEec
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMY------QGKDSMYQGKDSMYQG  524 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~~Y------~V~~v~~~gk~ciLdi  524 (627)
                      ++.|+|.|++   |+|+.++|.+.++.      ...+++.+.+...+..+....+.+.      .++..++.|..+|+|-
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~------~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~   75 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGR------GTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEG   75 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC------CeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEch
Confidence            4678899988   99999999887632      1124455555544322111112221      4455677899999976


Q ss_pred             C--Cc-----e-eccccCCCCceeEEEEcCCC---cccC-CC-----CCHHHHHHHHHHHHHHHHHhcCcccEEEECC--
Q psy9827         525 K--ES-----M-YQGKDSMYQGKDSMYQGKDS---MYQG-KD-----IKKEVKIKLFEQSQKLEKVWSHVFTGTITLS--  585 (627)
Q Consensus       525 ~--~~-----l-~~~~~~~~P~~~vIFI~pps---l~~~-~~-----~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~--  585 (627)
                      .  ..     + .++...-.|+ .+||+..|-   ++.. .|     ..++.+..+++.-..     .+.++.+|+++  
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~-~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~  149 (166)
T PRK06762         76 ILNSDRYGPMLKELIHLFRGNA-YTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDT-----LGVIGETIFTDNL  149 (166)
T ss_pred             hhccHhHHHHHHHHHHhcCCCe-EEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCC-----cCCCCeEEecCCC
Confidence            5  11     1 1111112352 167777773   1111 22     123323333322211     13478888766  


Q ss_pred             CHHHHHHHHHHHH
Q psy9827         586 GVDVWYRKTRELI  598 (627)
Q Consensus       586 ~l~~~~~~l~~~i  598 (627)
                      ++++.++++...+
T Consensus       150 ~~~~v~~~i~~~~  162 (166)
T PRK06762        150 SLKDIFDAILTDI  162 (166)
T ss_pred             CHHHHHHHHHHHh
Confidence            5666666666544

>PRK04182 cytidylate kinase; Provisional

Probab=90.88  E-value=3.8  Score=38.61  Aligned_cols=89  Identities=8%  Similarity=0.057  Sum_probs=47.4

Q ss_pred             HHhHHhCCCcEEEecC-CceeccccCCCCceeEEEEcCCC---cccC-C--CCCHHHHHHHHHHHHH-----HHHHh---
Q psy9827         510 GKDSMYQGKDSMYQGK-ESMYQGKDSMYQGKDSMYQGKDS---MYQG-K--DIKKEVKIKLFEQSQK-----LEKVW---  574 (627)
Q Consensus       510 V~~v~~~gk~ciLdi~-~~l~~~~~~~~P~~~vIFI~pps---l~~~-~--~~~e~~~~~~~~~~~~-----~e~~~---  574 (627)
                      +......+..||++-. .....+  ...-+  +|||..|-   ++.+ .  .....++.+.++....     +..-|   
T Consensus        67 ~~~~~~~~~~~Vi~g~~~~~~~~--~~~~~--~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~  142 (180)
T PRK04182         67 QLEIAEKEDNVVLEGRLAGWMAK--DYADL--KIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGID  142 (180)
T ss_pred             HHHHHhcCCCEEEEEeecceEec--CCCCE--EEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3334325677888754 323221  22225  78998875   1111 1  1223323333322222     22222   


Q ss_pred             ---cCcccEEEECC--CHHHHHHHHHHHHHhhC
Q psy9827         575 ---SHVFTGTITLS--GVDVWYRKTRELIEKQQ  602 (627)
Q Consensus       575 ---~~~fd~vi~n~--~l~~~~~~l~~~i~~~~  602 (627)
                         .+.||.+|.++  +++++++.|.+.+.+.+
T Consensus       143 ~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~~  175 (180)
T PRK04182        143 IDDLSIYDLVINTSRWDPEGVFDIILTAIDKLL  175 (180)
T ss_pred             ccccccccEEEECCCCCHHHHHHHHHHHHHHHh
Confidence               25789888875  78999999999887643

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=90.59  E-value=0.18  Score=52.69  Aligned_cols=72  Identities=14%  Similarity=0.136  Sum_probs=49.6

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCcc---------c--------------CCCCCCCCHHHHHHHHhcccccCCce
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFS---------A--------------PRKFNFILWATIKDTAMYQSSKEPGM  507 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~---------~--------------~~~~~Fvs~e~f~~~i~~~~~~~~~~  507 (627)
                      .+.|+|+||+   |++|..+|.+.+...+-         .              -++|||++...+.+....+.|.+-..
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~   83 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDAL   83 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHH
Confidence            4689999999   99999999888654211         1              13457888777776544444322111


Q ss_pred             ehHHhHHhCCCcEEEecC
Q psy9827         508 YQGKDSMYQGKDSMYQGK  525 (627)
Q Consensus       508 Y~V~~v~~~gk~ciLdi~  525 (627)
                      -.|++++++|+.+||+-.
T Consensus        84 ~~i~~i~~~gk~pIlvGG  101 (307)
T PRK00091         84 AAIADILARGKLPILVGG  101 (307)
T ss_pred             HHHHHHHhCCCCEEEECc
Confidence            188899999999999744

>PRK00698 tmk thymidylate kinase; Validated

Probab=90.42  E-value=1.6  Score=42.39  Aligned_cols=22  Identities=9%  Similarity=-0.133  Sum_probs=18.5

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhC
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDF  475 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~  475 (627)
                      .+.|+|.||.   |+|+.++|.+..
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999998   999999987753

>KOG2199|consensus

Probab=90.31  E-value=0.14  Score=53.67  Aligned_cols=54  Identities=17%  Similarity=0.091  Sum_probs=38.5

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhH
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARA  385 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~  385 (627)
                      .-.|||++|+   ...++     -|+.|..|||+.| +...|    |+||....-      ...||.||..-.
T Consensus       215 ~rkVRALYDF---eAaE~-----nELsFkaGdIItV-Ld~s~----~~WWKG~~~------~~~GlFPsnfVT  268 (462)
T KOG2199|consen  215 VRKVRALYDF---EAAED-----NELSFKAGDIITV-LDDSD----PNWWKGENH------RGIGLFPSNFVT  268 (462)
T ss_pred             chhhhhhhcc---cccCC-----CccceecCcEEEE-cccCC----cchhccccC------Ccccccchhhhh
Confidence            3469999998   33332     3567889999999 65555    599998442      478999997543

>KOG3532|consensus

Probab=90.15  E-value=0.68  Score=51.72  Aligned_cols=68  Identities=24%  Similarity=0.442  Sum_probs=53.7

Q ss_pred             CCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         210 KDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       210 ~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      ....|++..    .-+-|-.|.++    .+|-.+.|.+||++++|||.+++  +..++...++...+.++..+.++-.
T Consensus       385 s~~ig~vf~~~~~~~v~v~tv~~n----s~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~~~  456 (1051)
T KOG3532|consen  385 SSPIGLVFDKNTNRAVKVCTVEDN----SLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERSLD  456 (1051)
T ss_pred             cCceeEEEecCCceEEEEEEecCC----ChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeeccc
Confidence            344555553    24668888776    45666789999999999999999  9999999999999888888877543

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=90.00  E-value=0.13  Score=38.03  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=26.7

Q ss_pred             CCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         337 RAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       337 ~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ++.|.+||++.| +...+.    .||.++..+     .+.|+||...
T Consensus        15 ~l~~~~Gd~v~v-~~~~~~----~w~~~~~~~-----~~~G~vP~~~   51 (54)
T cd00174          15 ELSFKKGDIIEV-LEKSDD----GWWEGRLLG-----GKRGLFPSNY   51 (54)
T ss_pred             CCCCCCCCEEEE-EEcCCC----CeEEEEECC-----CCEEEEcccc
Confidence            456679999998 554333    799997653     1789999864

>smart00326 SH3 Src homology 3 domains

Probab=89.74  E-value=0.25  Score=36.88  Aligned_cols=52  Identities=12%  Similarity=-0.038  Sum_probs=34.2

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+++|.++|.+   .     ...++.+..||++.| +..++.    .||.++...     .+.|++|+..
T Consensus         3 ~~~~a~~~~~~---~-----~~~~l~~~~Gd~v~v-~~~~~~----~w~~~~~~~-----~~~G~vP~~~   54 (58)
T smart00326        3 PQVRALYDYTA---Q-----DPDELSFKKGDIITV-LEKSDD----GWWKGRLGR-----GKEGLFPSNY   54 (58)
T ss_pred             cEEEEeeeeCC---C-----CCCCCCCCCCCEEEE-EEcCCC----CeEEEEeCC-----CCEEEEchHH
Confidence            35667777722   1     123445679999998 554333    799997653     4789999864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG3129|consensus

Probab=89.71  E-value=0.91  Score=43.83  Aligned_cols=60  Identities=22%  Similarity=0.321  Sum_probs=42.7

Q ss_pred             EEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCC-HHHHHHHHHc-CCCeEEEEEEeCCCC
Q psy9827         221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMS-VKEARKLIDS-SKEKLSLTIRREVPR  284 (627)
Q Consensus       221 i~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s-~~e~~~~l~~-~~~~v~l~V~r~~~~  284 (627)
                      ++|.+|.++    ++|..+||+.||.|+.+.+..--+.. ...+....+. .+..+.++|.|.+..
T Consensus       141 a~V~sV~~~----SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~  202 (231)
T KOG3129|consen  141 AVVDSVVPG----SPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK  202 (231)
T ss_pred             EEEeecCCC----ChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence            679999887    56778999999999999776654322 4444444443 456788899886653

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=89.66  E-value=4.9  Score=37.55  Aligned_cols=83  Identities=7%  Similarity=0.037  Sum_probs=45.1

Q ss_pred             HHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCC-c--c---cCCCCCHHHHHHHHHHHHHHHHH-----h--
Q psy9827         510 GKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDS-M--Y---QGKDIKKEVKIKLFEQSQKLEKV-----W--  574 (627)
Q Consensus       510 V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~pps-l--~---~~~~~~e~~~~~~~~~~~~~e~~-----~--  574 (627)
                      +.+.+..+..||+|-. ... ..   ....+  +|||..|- .  +   ++...+.+++.+.+.+..+.+..     |  
T Consensus        67 i~~~~~~~~~~Vi~g~~~~~~~~---~~~d~--~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~  141 (171)
T TIGR02173        67 IHEIALKEKNVVLESRLAGWIVR---EYADV--KIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGI  141 (171)
T ss_pred             HHHHHhcCCCEEEEecccceeec---CCcCE--EEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4444446678998765 333 22   22336  88988875 1  1   11223444455544443333322     1  


Q ss_pred             ----cCcccEEEECC--CHHHHHHHHHHHH
Q psy9827         575 ----SHVFTGTITLS--GVDVWYRKTRELI  598 (627)
Q Consensus       575 ----~~~fd~vi~n~--~l~~~~~~l~~~i  598 (627)
                          ...||.+|..+  +.|+ ++.+..++
T Consensus       142 ~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       142 DIDDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             CccccccccEEEECCCCCHHH-HHHHHHHh
Confidence                14688887766  5777 77776654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>KOG3875|consensus

Probab=89.62  E-value=0.12  Score=52.44  Aligned_cols=58  Identities=10%  Similarity=0.030  Sum_probs=43.4

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCC-cCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSP-INNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~-~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..+-||.+|+   .+.+    | .|..|.+||+|+| .+++|....+ .||+.+..+  |  ...|+||...
T Consensus       268 ~~~arA~YdF---~a~n----p-~ElSlk~Gdml~i-a~K~dq~~~~~~gW~lat~d--g--~~tG~iP~NY  326 (362)
T KOG3875|consen  268 HEFARALYDF---VARN----P-VELSLKKGDMLAI-ASKEDQQGVRCEGWLLATRD--G--GTTGLIPINY  326 (362)
T ss_pred             HHHHHHHhhh---hcCC----H-HHhhhhcCchhhc-ccccccCCCCCcceeeeecc--C--Ceeeeeehhh
Confidence            3667888888   3322    3 5778899999999 8888875544 699998763  3  5899999974

>KOG0606|consensus

Probab=89.54  E-value=1.1  Score=53.12  Aligned_cols=58  Identities=22%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             EEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy9827         221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  282 (627)
Q Consensus       221 i~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~  282 (627)
                      ..|..|..|    ++|..++|+.||.|+-|||+.+.++.|.|+.++|-+.+..+++.+..-.
T Consensus       660 h~v~sv~eg----sPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ttple  717 (1205)
T KOG0606|consen  660 HSVGSVEEG----SPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTTPLE  717 (1205)
T ss_pred             eeeeeecCC----CCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEeeccc
Confidence            667888776    5666789999999999999999999999999999999999988876543

>KOG1118|consensus

Probab=88.78  E-value=0.24  Score=50.30  Aligned_cols=54  Identities=11%  Similarity=0.093  Sum_probs=42.5

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+..++||.+++   .|.++     .|++|..||++.+ .+|-|+    +||-....|      ..|+.|...
T Consensus       304 ~~~p~cralYdF---epenE-----gEL~fkeGDlI~l-~~QIde----nWyeG~~~g------~sG~FPvnY  357 (366)
T KOG1118|consen  304 MDQPCCRALYDF---EPENE-----GELDFKEGDLITL-TNQIDE----NWYEGEKHG------ESGMFPVNY  357 (366)
T ss_pred             ccchhheeeecc---CCCCC-----CccCcccCceeee-hhhcCc----chhhheecC------ccCccccce
Confidence            356789999999   54442     5789999999999 888887    999998775      477888753

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=88.43  E-value=1.8  Score=42.57  Aligned_cols=60  Identities=12%  Similarity=-0.053  Sum_probs=38.7

Q ss_pred             EEEEcCCC--cccC----CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-CHHHHHHHHHHHHHhh
Q psy9827         541 SMYQGKDS--MYQG----KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-GVDVWYRKTRELIEKQ  601 (627)
Q Consensus       541 vIFI~pps--l~~~----~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-~l~~~~~~l~~~i~~~  601 (627)
                      +|||.+|.  +.++    .+.++++++++++.....+ ++...+|++|.|+ ++++...++..+++..
T Consensus       137 ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~-~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~  203 (208)
T PRK14731        137 IVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQE-KLIERADYVIYNNGTLDELKAQTEQLYQVL  203 (208)
T ss_pred             EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChH-HHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            66776554  1111    3345666777765432222 3335689999997 8999999999988764

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=85.89  E-value=1.7  Score=42.36  Aligned_cols=81  Identities=11%  Similarity=0.005  Sum_probs=53.2

Q ss_pred             CCCcEEEecC---CceeccccCCCCceeEEEEcCCCcc------cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-
Q psy9827         516 QGKDSMYQGK---ESMYQGKDSMYQGKDSMYQGKDSMY------QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-  585 (627)
Q Consensus       516 ~gk~ciLdi~---~~l~~~~~~~~P~~~vIFI~ppsl~------~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-  585 (627)
                      +++.+++|+-   +.-..   .++-.  +|||..|.-.      ++...+++++..++.. +.-..+.....|+||.|+ 
T Consensus       102 ~~~~vi~e~pLL~E~~~~---~~~D~--vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~-Q~~~~~k~~~aD~vI~N~~  175 (196)
T PRK14732        102 EGKLVIWEVPLLFETDAY---TLCDA--TVTVDSDPEESILRTISRDGMKKEDVLARIAS-QLPITEKLKRADYIVRNDG  175 (196)
T ss_pred             cCCcEEEEeeeeeEcCch---hhCCE--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH-cCCHHHHHHhCCEEEECCC
Confidence            4678888886   21111   34456  8999988721      1234466666666554 333345677789999998 


Q ss_pred             CHHHHHHHHHHHHHhhC
Q psy9827         586 GVDVWYRKTRELIEKQQ  602 (627)
Q Consensus       586 ~l~~~~~~l~~~i~~~~  602 (627)
                      ++++...++..++++..
T Consensus       176 ~~~~l~~~v~~l~~~~~  192 (196)
T PRK14732        176 NREGLKEECKILYSTLL  192 (196)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            89999999998887643

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=85.81  E-value=3.6  Score=42.66  Aligned_cols=65  Identities=6%  Similarity=0.052  Sum_probs=40.6

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCc---------ee-----hHHhHHhC
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPG---------MY-----QGKDSMYQ  516 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~---------~Y-----~V~~v~~~  516 (627)
                      .+.|||+||+   |+|+.++|.+.++.       ..|++.+.+..++.......+.         .+     .+.+.+++
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~-------~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   74 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPK-------AVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKS   74 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCC-------CEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHc
Confidence            3578889998   99999999887642       2345555555544211100010         11     45666788


Q ss_pred             CCcEEEecC
Q psy9827         517 GKDSMYQGK  525 (627)
Q Consensus       517 gk~ciLdi~  525 (627)
                      |+.+|+|-.
T Consensus        75 g~~vIid~~   83 (300)
T PHA02530         75 GKSVIISDT   83 (300)
T ss_pred             CCeEEEeCC
Confidence            999999866

>PRK05480 uridine/cytidine kinase; Provisional

Probab=85.79  E-value=7.6  Score=37.90  Aligned_cols=23  Identities=4%  Similarity=0.010  Sum_probs=18.6

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhC
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDF  475 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~  475 (627)
                      ...-|.|.||+   |+||.+.|....
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34567779998   999999998765

>KOG4226|consensus

Probab=85.23  E-value=0.38  Score=47.92  Aligned_cols=59  Identities=14%  Similarity=0.047  Sum_probs=40.0

Q ss_pred             CCcee-eCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhH
Q psy9827         311 SQNLY-VQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARA  385 (627)
Q Consensus       311 ~~~~y-vra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~  385 (627)
                      +..++ |.|++.++.        .--.|+.|.+||.|+| +..  +..+|.||.|+...     .++||+|-...+
T Consensus       188 s~vl~vVvaLYsFss--------sndeELsFeKGerlei-vd~--Pe~DPdWwkarn~~-----G~vGLVPrNYv~  247 (379)
T KOG4226|consen  188 SRVLHVVVALYSFSS--------SNDEELSFEKGERLEI-VDK--PENDPDWWKARNAR-----GQVGLVPRNYVV  247 (379)
T ss_pred             ceEEEEEEEEecccC--------CChhhcccccCceeEe-ccC--CCCCchHHhhcccC-----CccceeecceEE
Confidence            34555 566666522        2235677889999999 432  34578999998753     589999987543

>PF12812 PDZ_1: PDZ-like domain

Probab=85.17  E-value=1.6  Score=35.79  Aligned_cols=40  Identities=30%  Similarity=0.207  Sum_probs=33.0

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHH
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE  111 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~  111 (627)
                      .+.++.....|+++...|+..|-.|.+|||+++.++....
T Consensus        30 ~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~f~   69 (78)
T PF12812_consen   30 VGGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDDFI   69 (78)
T ss_pred             CCEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHHHH
Confidence            3456667788999988889999999999999998875544

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=84.61  E-value=3.4  Score=37.87  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=40.2

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCC-CCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAE-GDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRRE  281 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~-GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~  281 (627)
                      +.-|.+|.++    ++|..+||.+ .|.|+.+++..+.  +.+++...++.. +..+.|.|...
T Consensus        44 ~~~Vl~V~p~----SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns  101 (138)
T PF04495_consen   44 GWHVLRVAPN----SPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNS  101 (138)
T ss_dssp             EEEEEEE-TT----SHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEET
T ss_pred             eEEEeEecCC----CHHHHCCccccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEEC
Confidence            6779999887    5666788998 6999999999988  678888888874 56888888653

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=84.28  E-value=2.6  Score=46.42  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             cEEEEEeec-CCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         199 TLRVQLSKS-RKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       199 ~~~V~L~k~-~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .+++++... .....+|+..+   ++..|+.|.+|    ++|..+||.+||.|++|||.+-...++        +++..+
T Consensus       438 ~~gL~~~~~~~~~~~LGl~v~~~~g~~~i~~V~~~----gPA~~AGl~~Gd~ivai~G~s~~l~~~--------~~~d~i  505 (558)
T COG3975         438 RFGLTFTPKPREAYYLGLKVKSEGGHEKITFVFPG----GPAYKAGLSPGDKIVAINGISDQLDRY--------KVNDKI  505 (558)
T ss_pred             hcceEEEecCCCCcccceEecccCCeeEEEecCCC----ChhHhccCCCccEEEEEcCcccccccc--------ccccce
Confidence            355555543 33446777775   46899999876    566789999999999999993221111        345677


Q ss_pred             EEEEEeCCC
Q psy9827         275 SLTIRREVP  283 (627)
Q Consensus       275 ~l~V~r~~~  283 (627)
                      .+.+.+.+.
T Consensus       506 ~v~~~~~~~  514 (558)
T COG3975         506 QVHVFREGR  514 (558)
T ss_pred             EEEEccCCc
Confidence            777766543

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=81.36  E-value=3.5  Score=44.30  Aligned_cols=55  Identities=27%  Similarity=0.420  Sum_probs=41.6

Q ss_pred             EEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC--eeEEEEEe
Q psy9827          75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQD--QIHLIVQN  129 (627)
Q Consensus        75 ~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~--~V~L~v~r  129 (627)
                      ++..+..+|+|+.+|+++||.++++|+..+.+++.............  .+.+.+.|
T Consensus       132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence            45579999999999999999999999999998876554444433222  26666665

>KOG1029|consensus

Probab=81.16  E-value=0.83  Score=51.77  Aligned_cols=51  Identities=14%  Similarity=0.083  Sum_probs=38.9

Q ss_pred             eCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhH
Q psy9827         316 VQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARA  385 (627)
Q Consensus       316 vra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~  385 (627)
                      |=|.+||   ...+|     -+++|++|||+.| +++||.    .||+..+.      ...||.||..-+
T Consensus      1056 viamYdY---~Aqnd-----DELsF~kgdiI~V-lnkdep----eWW~Ge~n------g~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1056 VIAMYDY---EAQND-----DELSFKKGDIINV-LNKDEP----EWWSGERN------GKSGLFPSNYVQ 1106 (1118)
T ss_pred             eEEeecc---ccCCc-----ccccccCCCEEEe-cCCCCh----hhhccccc------CccccCcccccc
Confidence            6677788   44333     2678999999999 888885    99998553      488999998653

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=80.64  E-value=12  Score=35.25  Aligned_cols=144  Identities=11%  Similarity=0.031  Sum_probs=71.7

Q ss_pred             CCCCCceEEEeCcc---HHHHHHHHhhhCCCCccc-CCCCCCCCHHHHHHHH--------hcccccCCceehHHh-HHhC
Q psy9827         450 HPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSA-PRKFNFILWATIKDTA--------MYQSSKEPGMYQGKD-SMYQ  516 (627)
Q Consensus       450 ~~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-~~~~~Fvs~e~f~~~i--------~~~~~~~~~~Y~V~~-v~~~  516 (627)
                      .|.|.|.|.|+||-   |++|.++|-..+-..+.- ..++ |    .|+...        +|..-.-|++-.++. +-..
T Consensus         4 rp~F~K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re-~----v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av~~a   78 (187)
T COG3172           4 RPFFVKTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRE-Y----VFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYA   78 (187)
T ss_pred             chhhheeeeeecCcccChHHHHHHHHHHhCCCchhHHHHH-H----HHHHhCCchhhhhccHHHHHhhhHHHHHHHHhCC
Confidence            47789999999996   999999998754332221 1111 1    111111        111111233323333 2335


Q ss_pred             CCcEEEecC---Cce----ec--cccC------CCCceeEEEEcCCCccc----CC-CCCHHHHHHHHHHHHHHHHHhcC
Q psy9827         517 GKDSMYQGK---ESM----YQ--GKDS------MYQGKDSMYQGKDSMYQ----GK-DIKKEVKIKLFEQSQKLEKVWSH  576 (627)
Q Consensus       517 gk~ciLdi~---~~l----~~--~~~~------~~P~~~vIFI~ppsl~~----~~-~~~e~~~~~~~~~~~~~e~~~~~  576 (627)
                      .|++++|.|   -.+    +.  -++.      =+|+ +++.+.+|...-    ++ -..+.+-++..+.++++=.++..
T Consensus        79 ~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~-DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~  157 (187)
T COG3172          79 NKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRF-DLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNI  157 (187)
T ss_pred             CceEEEeccHHHHHHHHHHHcccCCchHHHHHhhccc-ceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCC
Confidence            799999999   111    11  0111      1344 245556665211    11 11222234444444443333443


Q ss_pred             cccEEEECC-CHHHHHHHHHHHHHhh
Q psy9827         577 VFTGTITLS-GVDVWYRKTRELIEKQ  601 (627)
Q Consensus       577 ~fd~vi~n~-~l~~~~~~l~~~i~~~  601 (627)
                        -+|++.+ +-++-|.+..+++++.
T Consensus       158 --~~v~i~~~~y~eR~~~~~~aV~el  181 (187)
T COG3172         158 --PFVVIEGEDYLERYLQAVEAVEEL  181 (187)
T ss_pred             --cEEEEcCCCHHHHHHHHHHHHHHH
Confidence              3565555 7777777777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	627
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		1e-24
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		3e-24
3lh5_A	251	Crystal Structure Of The Sh3-Guanylate Kinase Core		7e-23
3tsw_B	194	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		3e-22
3tsw_B	194	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		8e-04
3tsv_A	124	Crystal Structure Of The Third Pdz Domain Of The Hu		5e-19
3shu_A	95	Crystal Structure Of Zo-1 Pdz3 Length = 95		1e-17
3e17_A	88	Crystal Structure Of The Second Pdz Domain From Hum		1e-10
3kfv_A	308	Crystal Structure Of The Sh3-Kinase Fragment Of Tig		2e-10
3kfv_A	308	Crystal Structure Of The Sh3-Kinase Fragment Of Tig		1e-07
2osg_A	83	Solution Structure And Binding Property Of The Doma		2e-10
2jwe_A	88	Solution Structure Of The Second Pdz Domain From Hu		2e-09
2rcz_A	81	Structure Of The Second Pdz Domain Of Zo-1 Length =		2e-09
3cyy_A	92	The Crystal Structure Of Zo-1 Pdz2 In Complex With		1e-08
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		2e-08
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		7e-08
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		1e-07
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		2e-05
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		8e-07
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		1e-06
2h3l_A	103	Crystal Structure Of Erbin Pdz Length = 103		2e-06
1p1d_A	196	Structural Insights Into The Inter-Domain Chaperoni		2e-06
1mfg_A	95	The Structure Of Erbin Pdz Domain Bound To The Carb		3e-06
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		4e-06
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		4e-06
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		4e-06
1obz_A	166	Crystal Structure Of The Complex Of The Pdz Tandem		4e-06
2qbw_A	195	The Crystal Structure Of Pdz-Fibronectin Fusion Pro		5e-06
3ch8_A	195	The Crystal Structure Of Pdz-Fibronectin Fusion Pro		6e-06
1wi2_A	104	Solution Structure Of The Pdz Domain From Riken Cdn		6e-06
1uez_A	101	Solution Structure Of The First Pdz Domain Of Human		8e-06
1n99_A	166	Crystal Structure Of The Pdz Tandem Of Human Synten		9e-06
1uit_A	117	Solution Structure Of Rsgi Ruh-006, The Third Pdz D		1e-05
2jre_A	108	C60-1, A Pdz Domain Designed Using Statistical Coup		3e-05
2vz5_A	139	Structure Of The Pdz Domain Of Tax1 (Human T-Cell L		3e-05
3sfj_A	104	Crystal Structure Of Tax-Interacting Protein-1 (Tip		3e-05
1uf1_A	128	Solution Structure Of The Second Pdz Domain Of Huma		3e-05
4e3b_A	102	Crystal Structure Of Tax-Interacting Protein-1 (Tip		3e-05
3diw_A	124	C-Terminal Beta-Catenin Bound Tip-1 Structure Lengt		4e-05
3gj9_A	124	Crystal Structure Of Tip-1 In Complex With C-Termin		4e-05
2kg2_A	124	Solution Structure Of A Pdz Protein Length = 124		4e-05
3dj3_A	113	Crystal Structure Of C-Terminal Truncated Tip-1 (6-		4e-05
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		6e-05
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		9e-05
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		4e-04
2ocs_A	88	The Crystal Structure Of The First Pdz Domain Of Hu		1e-04
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		1e-04
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		1e-04
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		1e-04
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		2e-04
2eeh_A	100	Solution Structure Of First Pdz Domain Of Pdz Domai		2e-04
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		2e-04
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		7e-04
2iwq_A	123	7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		2e-04
2kbs_A	92	Solution Structure Of Harmonin Pdz2 In Complex With		2e-04
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		2e-04
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		7e-04
2krg_A	216	Solution Structure Of Human Sodium HYDROGEN EXCHANG		3e-04
1x5n_A	114	Solution Structure Of The Second Pdz Domain Of Harm		3e-04
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		3e-04
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		4e-04
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		4e-04
2h3m_A	97	Crystal Structure Of Zo-1 Pdz1 Length = 97		5e-04
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		5e-04
2rrm_A	100	Interplay Between Phosphatidyl-Inositol-Phosphates		5e-04
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		5e-04
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		5e-04
2ozf_A	92	The Crystal Structure Of The 2nd Pdz Domain Of The		5e-04
2lob_A	112	Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Re		6e-04
2dmz_A	129	Solution Structure Of The Third Pdz Domain Of Human		6e-04
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		6e-04
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		6e-04
2h2b_A	107	Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-der		6e-04
2h2c_A	107	Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Der		6e-04
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		6e-04
2kjd_A	128	Solution Structure Of Extended Pdz2 Domain From Nhe		7e-04
4e34_A	87	Crystal Structure Of Cftr Associated Ligand (Cal) P		7e-04
1pdr_A	99	Crystal Structure Of The Third Pdz Domain From The		8e-04
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		8e-04
2jxo_A	98	Structure Of The Second Pdz Domain Of Nherf-1 Lengt		8e-04
2dc2_A	103	Solution Structure Of Pdz Domain Length = 103		8e-04

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 129/273 (47%), Gaps = 53/273 (19%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
           +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct: 142 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 198
Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
             +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD         
Sbjct: 199 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 247
Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
                      +YQ +K      G D    G   ++  K+ + Q K ++    D      
Sbjct: 248 -----------IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALL---DVTPNAV 293
Query: 547 DSM----------YQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTI 582
           D +          +   D K+ VK               KL+E+S KL K   H+FT TI
Sbjct: 294 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI 353
Query: 583 TLSGV-DVWYRKTRELIEKQQSSPVWISETKSN 614
            L+ + D WY   +E I++QQ+  VW+SE K++
Sbjct: 354 NLNSMNDGWYGALKEAIQQQQNQLVWVSEGKAD 386

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 47/266 (17%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
           +G+N++EV++GIIPNK RAE+LA+ Q+   K   +A   R                    
Sbjct: 150 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 206
Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
             +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD         
Sbjct: 207 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 255
Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMY----QGKDSM 542
                      +YQ +K      G D    G   ++  K+ + Q K ++        D +
Sbjct: 256 -----------IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRL 304
Query: 543 YQGK---DSMYQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTITLS 585
              +     ++   D K+ VK               KL+E+S KL K   H+FT TI L+
Sbjct: 305 NYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLN 364
Query: 586 GV-DVWYRKTRELIEKQQSSPVWISE 610
            + D WY   +E I++QQ+  VW+SE
Sbjct: 365 SMNDGWYGALKEAIQQQQNQLVWVSE 390

>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain Of Zo-1 Length = 251

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 120/266 (45%), Gaps = 84/266 (31%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
           +G+N++EV++GIIPNK RAE+LA+ Q+  TK                             
Sbjct: 47  IGKNHKEVERGIIPNKNRAEQLASVQYVQTK----------------------------- 77
Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
                        FPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD         
Sbjct: 78  -------------FPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 115
Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMY----QGKDSM 542
                      +YQ +K      G D    G   ++  K+ + Q K ++        D +
Sbjct: 116 -----------IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRL 164
Query: 543 YQGK---DSMYQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTITLS 585
              +     ++   D K+ VK               KL+E+S KL K   H+FT TI L+
Sbjct: 165 NYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLN 224
Query: 586 GV-DVWYRKTRELIEKQQSSPVWISE 610
            + D WY   +E I++QQ+  VW+SE
Sbjct: 225 SMNDGWYGALKEAIQQQQNQLVWVSE 250

>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human Zo-1 Maguk Protein Length = 124

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Query: 45  FFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
             + P  + + F+K  SVG+RL GGN VGIFV  V   SPA+ +GL+ GD+IL+VN++D 
Sbjct: 24  MILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 83
Query: 105 KGITREEAVLFLLSL--QDQIHLIVQNRRDEYEHVVASQRG 143
             I REEAVLFLL L   +++ ++ Q ++D Y  +V S  G
Sbjct: 84  TNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVG 124

>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3 Length = 95

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 52  RFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           + + F+K  SVG+RL GGN VGIFV  V   SPA+ +GL+ GD+IL+VN++D   I REE
Sbjct: 6   KLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 65
Query: 112 AVLFLLSL--QDQIHLIVQNRRDEYEHVV 138
           AVLFLL L   +++ ++ Q ++D Y  +V
Sbjct: 66  AVLFLLDLPKGEEVTILAQKKKDVYRRIV 94

>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona Occludens-2 Length = 88

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 202 VQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVK 261
           V L KSR  +++G+ LG++IFVKE+T       +     L EGD++LKIN   T+ MS+ 
Sbjct: 4   VLLMKSRANEEYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 262 EARKLIDSSKEKLSLTIRREVP 283
           +ARKLI+ S+ KL L + R++ 
Sbjct: 61  DARKLIEKSRGKLQLVVLRDLE 82

>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight Junction Protein 3 (Tjp3) In Apo-Form Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 368 GRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXX----XXXXXXXXXX 423
           GR+ +E ++GIIPN++RAE+LA+ +       +    S G                    
Sbjct: 55  GRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKT 114
Query: 424 XXDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF 479
                +D+       ++P YERV LR   F RPVV+ GPVAD+A  KL  + PD+F
Sbjct: 115 TQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAXQKLTAEXPDQF 170

>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight Junction Protein 3 (Tjp3) In Apo-Form Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 562 KLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQSSPVWISE 610
           +L+ Q+QKL K  SH+FT TI L+G  D WY++ + +I +QQ+ P+W +E
Sbjct: 250 RLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAE 299

>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain- Swapped Dimer Of Zo2pdz2 Length = 83

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 202 VQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVK 261
           V L KSR  +++G+ LG++IFVKE+T       +     L EGD++LKIN   T+ MS+ 
Sbjct: 4   VLLMKSRANEEYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 262 EARKLIDSSKEKLSLTIRRE 281
           +ARKLI+ S+ KL L + R+
Sbjct: 61  DARKLIEKSRGKLQLVVLRD 80

>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human Zonula Occludens-1: A Dimeric Form With 3d Domain Swapping Length = 88

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
           +V L KSRK +++G+ L + IFVKE++    ++ +     + EGDV+LKIN   T+ MS+
Sbjct: 2   KVTLVKSRKNEEYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSL 58
Query: 261 KEARKLIDSSKEKLSLTIRRE 281
            +A+ LI+ SK KL + ++R+
Sbjct: 59  TDAKTLIERSKGKLKMVVQRD 79

>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1 Length = 81

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
           +V L KSRK +++G+ L + IFVKE++    ++ +     + EGDV+LKIN   T+ MS+
Sbjct: 3   KVTLVKSRKNEEYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSL 59
Query: 261 KEARKLIDSSKEKLSLTIRRE 281
            +A+ LI+ SK KL + ++R+
Sbjct: 60  TDAKTLIERSKGKLKMVVQRD 80

>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The Cx43 Peptide Length = 92

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
           +V L KS K +++G+ L + IFVKE++    ++ +     + EGDV+LKIN   T+ MS+
Sbjct: 5   KVTLVKSAKNEEYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSL 61
Query: 261 KEARKLIDSSKEKLSLTIRRE 281
            +A+ LI+ SK KL + ++R+
Sbjct: 62  TDAKTLIERSKGKLKMVVQRD 82

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 37  GSPDLFSIFFVEPDPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPG 93
           GSP+      +  +PR I   +  + +G  + GG +  GIF++ +  G PA L G L+ G
Sbjct: 1   GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKG 60
Query: 94  DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           D+IL VN +D++  + E+A + L +    + +I Q + +EY    A+ R DS
Sbjct: 61  DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 37  GSPDLFSIFFVEPDPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPG 93
           GSP+      +  +PR I   +  + +G  + GG +  GIF++ +  G PA L G L+ G
Sbjct: 1   GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKG 60
Query: 94  DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           D+IL VN +D++  + E+A + L +    + +I Q + +EY    A+ R +S
Sbjct: 61  DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVNS 112

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 30  FVTAVQPGSP--------DLFSIFFVEPDPRFITFQKEGS-VGIRLTGG-NKVGIFVTAV 79
           + TA+ P SP        DL     +  +PR I   +  + +G  + GG +  GIF++ +
Sbjct: 279 YPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFI 338
Query: 80  QPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
             G PA L G L+ GD+IL VN +D++  + E+A + L +    + +I Q + +EY
Sbjct: 339 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY 394

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 38/201 (18%)
Query: 442 AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP---------------RKFN 486
           +YE V+     + RP+++ GP  D A D LL +FPDKF +                R ++
Sbjct: 519 SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 578
Query: 487 FI---------------LWATIKDTAMY----QSSKEPGMYQGKDSMYQGKDSMYQGKES 527
           F+               + A   ++ +Y    QS +E    QGK  +     +  +  ++
Sbjct: 579 FVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAE-QGKHCILDVSANAVRRLQA 637
Query: 528 MYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV 587
            +    +++    S+   ++ +   K I +E   K F+++ KLE+ ++  F+  +     
Sbjct: 638 AHLHPIAIFIRPRSL---ENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSF 694
Query: 588 DVWYRKTRELIEKQQSSPVWI 608
           +  Y K + +IE      +W+
Sbjct: 695 EEIYHKVKRVIEDLSGPYIWV 715

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 50  DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           +PR +   K  + +G  + GG +  GIFV+ +  G PA L G LQ GD+IL VN +D++G
Sbjct: 3   EPRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEY 134
            + E+A   L      + +I Q + ++Y
Sbjct: 63  ASHEQAAAALKGAGQTVTIIAQYQPEDY 90

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 50  DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           +PR I   K  + +G  + GG +  GIFV+ +  G PA L G L+ GD+IL VN ++++ 
Sbjct: 15  EPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
            T E+A   L      + ++ Q R +EY    +S
Sbjct: 75  ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESS 108

>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz Length = 103

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 47  VEPDPRFITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQGLQPGDKILKVND 101
           VE DP  + F   G VG R   GN       GIFVT VQP  PAS + LQPGDKI++ N 
Sbjct: 17  VEKDPE-LGFSISGGVGGR---GNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANG 71
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIV 127
                I   +AV  L + Q+ + LI+
Sbjct: 72  YSFINIEHGQAVSLLKTFQNTVELII 97

>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of Tandem Pdz Domains In Glutamate Receptor Interacting Proteins Length = 196

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 24/149 (16%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGST--VTLKVRRRIVLPASPEPQTLRVQLS 205
           +++ DR+M+ NG+  E+  +  A Q+LRDS  T  VTL++   +     P   T  V+L 
Sbjct: 55  LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLP 114
Query: 206 KSRKKDDFGIIL--------GNKIFVKE-----VTHRLDNNASPGTHQLAEGDVLLKINN 252
           K +   + GI +        G+ + + +     V HR       GT +L  GD LL I+N
Sbjct: 115 K-KHSVELGITISSPSSRKPGDPLVISDIKKGSVAHR------TGTLEL--GDKLLAIDN 165
Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
              D  S+++A +++   ++ + L IR++
Sbjct: 166 IRLDSCSMEDAVQILQQCEDLVKLKIRKD 194

>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy- Terminal Tail Of The Erbb2 Receptor Length = 95

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 47  VEPDPRFITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQGLQPGDKILKVND 101
           VE DP  + F   G VG R   GN       GIFVT VQP  PAS + LQPGDKI++ N 
Sbjct: 9   VEKDPE-LGFSISGGVGGR---GNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANG 63
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIV 127
                I   +AV  L + Q+ + LI+
Sbjct: 64  YSFINIEHGQAVSLLKTFQNTVELII 89

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 50  DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           +PR I   K  + +G  + GG +  GIFV+ +  G PA L G L+ GD+IL VN ++++ 
Sbjct: 12  EPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 71
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEY 134
            T E+A   L      + ++ Q R +EY
Sbjct: 72  ATHEQAAAALKRAGQSVTIVAQYRPEEY 99

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 50  DPRFITFQKEGS-VGIRLTGGNKV-GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           +PR I   +  + +G  + GG    GIF++ +  G PA L G L+ GD+IL VN +D++ 
Sbjct: 11  EPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEY 134
            + E+A + L +    + +I Q + +EY
Sbjct: 71  ASHEQAAIALKNAGQTVTIIAQYKPEEY 98

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 50  DPRFITFQKEGS-VGIRLTGGNK-VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           +PR I   +  + +G  + GG    GIF++ +  G PA L G L+ GD+IL VN +D++ 
Sbjct: 6   EPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 65
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA 139
            + E+A + L +    + +I Q + +EY    A
Sbjct: 66  ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 98

>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of Syntenin With An Interleukin 5 Receptor Alpha Peptide. Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 50  DPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           DPR +   K+  G +G+RL   +  GIFV  VQ  SPASL GL+ GD++L++N  +  G 
Sbjct: 4   DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62
Query: 108 TREEAVLFL-LSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIK-----------VNDRIM 155
           + ++A   L  +  ++I + +++R   +E  +   +  + H+            V D   
Sbjct: 63  SSDKAHKVLKQAFGEKITMTIRDR--PFERTITMHKDSTGHVGFIFKNGKITSIVKDSSA 120
Query: 156 SANGLSLEN------------VEYGTAVQVLRDSGSTVTLKV 185
           + NGL  E+            ++      +L  SG+ VT+ +
Sbjct: 121 ARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162

>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein Length = 195

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 54  ITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           + F   G VG R   GN       GIFVT VQP  PAS + LQPGDKI++ N      I 
Sbjct: 4   LGFSISGGVGGR---GNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYSFINIE 59
Query: 109 REEAVLFLLSLQDQIHLIV 127
             +AV  L + Q+ + LI+
Sbjct: 60  HGQAVSLLKTFQNTVELII 78

>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein Length = 195

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 54  ITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           + F   G VG R   GN       GIFVT VQP  PAS + LQPGDKI++ N      I 
Sbjct: 5   LGFSISGGVGGR---GNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYSFINIE 60
Query: 109 REEAVLFLLSLQDQIHLIV 127
             +AV  L + Q+ + LI+
Sbjct: 61  HGQAVSLLKTFQNTVELII 79

>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna 2700099c19 Length = 104

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 51  PRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
           PR +T +K     +G  + GG  +++GIF++ V P S A   GLQ GD++L VND+D + 
Sbjct: 16  PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQD 75
Query: 107 ITREEAVLFL 116
           I   +AV  L
Sbjct: 76  IEHSKAVEIL 85

>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526 Protein Length = 101

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 62  VGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
           +G  + GG++  VGI+V+ V+PGS A  +GL+ GD+IL+VND  +  +T  EAV
Sbjct: 23  LGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAV 76

>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 50  DPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           DPR +   K+  G +G+RL   +  GIFV  VQ  SPASL GL+ GD++L++N  +  G 
Sbjct: 4   DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62
Query: 108 TREEAVLFL-LSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIK-----------VNDRIM 155
           + ++A   L  +  ++I   +++R   +E  +   +  + H+            V D   
Sbjct: 63  SSDKAHKVLKQAFGEKITXTIRDR--PFERTITXHKDSTGHVGFIFKNGKITSIVKDSSA 120
Query: 156 SANGLSLEN------------VEYGTAVQVLRDSGSTVTLKV 185
           + NGL  E+            ++      +L  SG+ VT+ +
Sbjct: 121 ARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162

>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain Of Hdlg5 (Kiaa0583) Protein [homo Sapiens] Length = 117

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 46  FVEPDPRFITFQKEGS-VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
           +VE +PR +  QK    +GI +  G K GI+V+ V  GS A   GL+ GD++L+ N +++
Sbjct: 16  YVE-EPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINL 74
Query: 105 KGITREEAVLFLLSLQDQIHLIVQ 128
           +  T ++A L +    D I ++ Q
Sbjct: 75  RSATEQQARLIIGQQCDTITILAQ 98

>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling Analysis Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Query: 42  FSIFFVEPDPRFITFQKEGSVGIRLTG-------GNKVGIFVTAVQPGSPASLQG-LQPG 93
           FS++ VE        +   S+GI ++G       G   GI+V ++ PGS A+L G ++P 
Sbjct: 11  FSLYSVE----LFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPN 66
Query: 94  DKILKVNDMDMKGITREEAVLFL 116
           DKIL+V+D++++G+ + + V  L
Sbjct: 67  DKILRVDDVNVQGMAQSDVVEVL 89

>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia Virus Type I) Binding Protein 3 Length = 139

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
           GI+VT V  G PA + GLQ GDKI++VN  DM  +T ++A
Sbjct: 65  GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 104

>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz Domain Bound To Ical36 Inhibitor Peptide Length = 104

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
           GI+VT V  G PA + GLQ GDKI++VN  DM  +T ++A
Sbjct: 46  GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 85

>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Kiaa1526 Protein Length = 128

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 61  SVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
           S+G+ + GG +  +GI++T V PGS A   GL+ GD+IL+VN      I  +EAV  L S
Sbjct: 33  SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 119 LQDQIHLIV 127
            +   HLI+
Sbjct: 93  SR---HLIL 98

>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide Length = 102

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
           GI+VT V  G PA + GLQ GDKI++VN  DM  +T ++A
Sbjct: 44  GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 83

>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure Length = 124

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
           GI+VT V  G PA + GLQ GDKI++VN  DM  +T ++A
Sbjct: 54  GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93

>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of Kir2.3 Length = 124

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
           GI+VT V  G PA + GLQ GDKI++VN  DM  +T ++A
Sbjct: 54  GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93

>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein Length = 124

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
           GI+VT V  G PA + GLQ GDKI++VN  DM  +T ++A
Sbjct: 54  GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93

>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113) Length = 113

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
           GI+VT V  G PA + GLQ GDKI++VN  DM  +T ++A
Sbjct: 55  GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 94

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 38/205 (18%)
Query: 438 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--------------- 482
           SK  +YE V+ +   + RPV++ GP+ D   D L+ +FPDKF +                
Sbjct: 90  SKVLSYEPVNQQEVNYTRPVIILGPMKDRVNDDLISEFPDKFGSCVPHTTRPKRDYEVDG 149
Query: 483 RKFNFI-----LWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKD---- 533
           R ++F+     +   I++    ++ +      G  S+   +    +GK  +         
Sbjct: 150 RDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGT-SVQSVRAVAEKGKHCILDVSGNAIK 208
Query: 534 ----------SMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTIT 583
                     S++    SM   ++ M   K +  E   K FE++ +LE+ ++  FT  + 
Sbjct: 209 RLQIAQLYPISIFIKPKSM---ENIMEMNKRLTDEQARKTFERAVRLEQEFTEHFTAIVQ 265
Query: 584 LSGVDVWYRKTRELIEKQQSSPVWI 608
              ++  Y + +++IE+Q    +W+
Sbjct: 266 GDTLEDIYNQVKQIIEEQSGPYIWV 290

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 38/157 (24%)
Query: 69  GNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
           G+   IF+T + PG  A+  G L+  D IL VN++D++ +T   AV  L      + L V
Sbjct: 39  GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYV 98
Query: 128 QNRRDEYEHV-----VASQRGDSFHI--------------------------------KV 150
             R+   E V     +   +G  F I                                ++
Sbjct: 99  MRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQI 158
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
            D+I++ N + LE+V +  AV  L+++   V LKV +
Sbjct: 159 GDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 195

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
           A+Q G    ++VND I+  N + +  V +  AV+ L+++GS V L V RR      P  +
Sbjct: 55  AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR----KPPAEK 107
Query: 199 TLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
            + ++L K  K   F I  G         N I+V ++   ++  A+    +L  GD +L 
Sbjct: 108 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGRLQIGDKILA 164
Query: 250 INN 252
           +N+
Sbjct: 165 VNS 167

>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human Nherf-2 (slc9a3r2) Length = 88

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 59  EGSVGIRLTG-GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL 117
           E   G  L G   + G F+  V+PGSPA    L+ GD++++VN ++++G T  + V  + 
Sbjct: 11  EQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIK 70
Query: 118 SLQDQIHLIVQNRRD 132
           +++ Q  L+V ++ D
Sbjct: 71  AVEGQTRLLVVDQED 85

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 442 AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP---------------RKFN 486
           +YE V+     + RP+++ GP  D A D LL +FPDKF +                R ++
Sbjct: 93  SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 152
Query: 487 FILWATIKDTAMYQSSK--EPGMYQGK---DSMYQGKDSMYQGKESMYQGKDSMYQGKDS 541
           F+  +  K     Q+ K  E G Y       S+   ++   QGK  +     +  +   +
Sbjct: 153 FVS-SREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQA 211
Query: 542 MYQGKDSMY-----------QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVW 590
            +    +++             K I +E   K F+++ KLE+ ++  F+  +     +  
Sbjct: 212 AHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEI 271
Query: 591 YRKTRELIEKQQSSPVWI 608
           Y K + +IE      +W+
Sbjct: 272 YHKVKRVIEDLSGPYIWV 289

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 442 AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP---------------RKFN 486
           +YE V+     + RP+++ GP  D A D LL +FPDKF +                R ++
Sbjct: 99  SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 158
Query: 487 FILWATIKDTAMYQSSK--EPGMYQGK---DSMYQGKDSMYQGKESMYQGKDSMYQGKDS 541
           F+  +  K     Q+ K  E G Y       S+   ++   QGK  +     +  +   +
Sbjct: 159 FVS-SREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQA 217
Query: 542 MYQGKDSMY-----------QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVW 590
            +    +++             K I +E   K F+++ KLE+ ++  F+  +     +  
Sbjct: 218 AHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEI 277
Query: 591 YRKTRELIEKQQSSPVWI 608
           Y K + +IE      +W+
Sbjct: 278 YHKVKRVIEDLSGPYIWV 295

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 57  QKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITRE 110
           + +GS+GI +TGG        GI+V A+ P   A   G +  GD++L VN + ++G T +
Sbjct: 12  KTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHK 71
Query: 111 EAVLFLLSLQDQIHLIVQ 128
           +AV  L +    +HL+++
Sbjct: 72  QAVETLRNTGQVVHLLLE 89

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 57  QKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITRE 110
           + +GS+GI +TGG        GI+V A+ P   A   G +  GD++L VN + ++G T +
Sbjct: 20  KTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHK 79
Query: 111 EAVLFLLSLQDQIHLIVQ 128
           +AV  L +    +HL+++
Sbjct: 80  QAVETLRNTGQVVHLLLE 97

>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain Containing Protein 7 Length = 100

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 60  GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL 117
           G +G  + GG++  +GIFV+ V+ GS A   GL  GDKI +VN + ++  T   AV  L 
Sbjct: 22  GRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLT 81
Query: 118 SLQDQIHLIVQ 128
           S   ++H++V+
Sbjct: 82  S-SSRLHMMVR 91

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 46/180 (25%)
Query: 54  ITFQKEGS-VGIRLTGGN---KVG----IFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
           IT ++  S +G  + GG     +G    IF+T + PG  A+  G L+  D IL VN++D+
Sbjct: 9   ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV-------------------VASQR--- 142
           + +T   AV  L      + L V  R+   E V                   V +Q    
Sbjct: 69  REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPG 128
Query: 143 -----------GDSFH----IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
                      G + H    +++ D+I++ N + LE+V +  AV  L+++   V LKV +
Sbjct: 129 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
           A+Q G    ++VND I+  N + +  V +  AV+ L+++GS V L V RR      P  +
Sbjct: 48  AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR----KPPAEK 100
Query: 199 TLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
            + ++L K  K   F I  G         N I+V ++   ++  A+    +L  GD +L 
Sbjct: 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGRLQIGDKILA 157
Query: 250 INN 252
           +N+
Sbjct: 158 VNS 160

>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz Length = 123

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 43  SIFFVEPDPRFITFQKE--GSVGIRLTGGNKVG-----------IFVTAVQPGSPASLQG 89
           +++F    PR +   +E   S+GI + GG  +G           IF+  V   SPA   G
Sbjct: 17  NLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNG 76
Query: 90  -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129
            L+PGD+I++V+ MD++  + E+AV  +    + +  +VQ+
Sbjct: 77  TLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117

>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The Carboxyl Tail Peptide Of Cadherin23 Length = 92

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 53  FITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITRE 110
           FI+      +G  ++ G   K GIF++ V+PGS ++  GL+ GD+I++VN +D   +  +
Sbjct: 6   FISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHK 65
Query: 111 EAVLFLLS 118
           EAV  L S
Sbjct: 66  EAVNVLKS 73

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 46/180 (25%)
Query: 54  ITFQKEGS-VGIRLTGGN---KVG----IFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
           IT ++  S +G  + GG     +G    IF+T + PG  A+  G L+  D IL VN++D+
Sbjct: 6   ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV-------------------VASQR--- 142
           + +T   AV  L      + L V  R+   E V                   V +Q    
Sbjct: 66  REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPG 125
Query: 143 -----------GDSFH----IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
                      G + H    +++ D+I++ N + LE+V +  AV  L+++   V LKV +
Sbjct: 126 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 185

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
           A+Q G    ++VND I+  N + +  V +  AV+ L+++GS V L V RR      P  +
Sbjct: 45  AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR----KPPAEK 97
Query: 199 TLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
            + ++L K  K   F I  G         N I+V ++   ++  A+    +L  GD +L 
Sbjct: 98  VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGRLQIGDKILA 154
Query: 250 INN 252
           +N+
Sbjct: 155 VNS 157

>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE Regulatory Factor 1(150-358) Length = 216

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 51  PRFITFQKEGS-VGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PR  T +K  S  G  L +  +K G F+ +V P SPA   GL+  D+I++VN + M+G  
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 109 REEAVLFLLSLQDQIHLIVQNRR-DEY 134
             + V  + +  D+  L+V +R  DE+
Sbjct: 70  HGDVVSAIRAGGDETKLLVVDRETDEF 96

>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin Protein Length = 114

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 53  FITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITRE 110
           FI+      +G  ++ G   K GIF++ V+PGS ++  GL+ GD+I++VN +D   +  +
Sbjct: 20  FISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHK 79
Query: 111 EAVLFLLS 118
           EAV  L S
Sbjct: 80  EAVNVLKS 87

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 51  PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           P+ + F   G VG +   G+   I+VT++  G  A   G LQ GDK+L VN + ++ +T 
Sbjct: 13  PKGLGFSIAGGVGNQHIPGDN-SIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTH 71
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
           EEAV  L +  D ++L V      Y
Sbjct: 72  EEAVTALKNTSDFVYLKVAKPTSMY 96

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 62  VGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV 113
           +G  + GG       N  GI+V+ ++    A+L G LQ GDKIL VN  D+K +  ++AV
Sbjct: 22  LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 81
Query: 114 LFLLSLQDQIHLIVQNR 130
               +    + L VQ+R
Sbjct: 82  DLFRNAGYAVSLRVQHR 98

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 62  VGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV 113
           +G  + GG       N  GI+V+ ++    A+L G LQ GDKIL VN  D+K +  ++AV
Sbjct: 20  LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 114 LFLLSLQDQIHLIVQNR 130
               +    + L VQ+R
Sbjct: 80  DLFRNAGYAVSLRVQHR 96

>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1 Length = 97

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           NDR+   NG+S++NVE+  AVQ LR SG    + +RR+
Sbjct: 59  NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 35  QPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQG 89
           +PG  D+F +   + D          S+GI +TGG        GI+V AV P   A   G
Sbjct: 2   KPG--DIFEVELAKNDN---------SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDG 50
Query: 90  -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
            +  GD++L VN + ++G T ++AV  L +    +HL+++
Sbjct: 51  RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 90

>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And Claudins Upon Binding To The 1st Pdz Domain Of Zonula Occludens 1 Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++ NDR+   NG+S++NVE+  AVQ LR SG    + +RR+
Sbjct: 59  LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 99

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 51  PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           P+ + F   G VG +   G+   I+VT +  G  A   G LQ GDK+L VN + ++ +T 
Sbjct: 13  PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH 71
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
           EEAV  L +  D ++L V      Y
Sbjct: 72  EEAVTALKNTSDFVYLKVAKPTSMY 96

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 51  PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           P+ + F   G VG +   G+   I+VT +  G  A   G LQ GDK+L VN++ ++ +T 
Sbjct: 21  PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH 79
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
           EEAV  L +  D ++L V      Y
Sbjct: 80  EEAVTALKNTSDFVYLKVAKPTSMY 104

>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human Nherf-1 (Slc9a3r1) Length = 92

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 51  PRFITFQKEGS-VGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PR  T +K  S  G  L +  +K G F+ +V P SPA   GL+  D+I++VN + M+G  
Sbjct: 5   PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 64
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
             + V  + +  D+  L+V +R  E
Sbjct: 65  HGDVVSAIRAGGDETKLLVVDRETE 89

>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Regulator-Associated Ligand) Length = 112

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 62  VGIRLTGGNKVG--IFVTAVQPGSPAS-LQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
           +GI +TGG + G  I ++ + PG PA    GL  GD IL VN ++++    +EAV  L  
Sbjct: 41  LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 100
Query: 119 LQDQIHLIV 127
            + +I   V
Sbjct: 101 QRGEIEFEV 109

>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad- Like Protein Length = 129

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 41  LFSIFFVEPDPRFITFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPASLQG-LQ 91
           LF  + VE        +K+G S+GIR+ G       G   GI+V +V PGS A   G +Q
Sbjct: 13  LFETYNVE------LVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQ 66
Query: 92  PGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
             DKI+ V+ ++++G    + V  L +    +HL +  R+
Sbjct: 67  VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 35  QPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQG 89
           +PG  D+F +   + D          S+GI +TGG        GI+V AV P   A   G
Sbjct: 2   KPG--DIFEVELAKND---------NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDG 50
Query: 90  -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
            +  GD++L VN + ++G T ++AV  L +    +HL+++
Sbjct: 51  RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 90

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 51  PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           P+ + F   G VG +   G+   I+VT +  G  A   G LQ GDK+L VN++ ++ +T 
Sbjct: 9   PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH 67
Query: 110 EEAVLFLLSLQDQIHLIV 127
           EEAV  L +  D ++L V
Sbjct: 68  EEAVTALKNTSDFVYLKV 85

>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived Ligand (wrrttyl) Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++ NDR+   NG+S++NVE+  AVQ LR SG    + +RR+
Sbjct: 56  LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96

>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived Ligand (Wrrttwv) Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           NDR+   NG+S++NVE+  AVQ LR SG    + +RR+
Sbjct: 59  NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 61  SVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEA 112
            +G  + GG       N  GI+V+ ++    A+L G LQ GDKIL VN  D+K +  ++A
Sbjct: 29  GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
Query: 113 VLFLLSLQDQIHLIVQNR 130
           V    +    + L VQ+R
Sbjct: 89  VDLFRNAGYAVSLRVQHR 106

>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1 (150- 270) Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 51  PRFITFQKEGS-VGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PR  T +K  S  G  L +  +K G F+ +V P SPA   GL+  D+I++VN + M+G  
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 109 REEAVLFLLSLQDQIHLIVQNRR-DEY 134
             + V  + +  D+  L+V +R  DE+
Sbjct: 70  HGDVVSAIRAGGDETKLLVVDRETDEF 96

>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain Bound To Ical36 (Ansrwptsii) Peptide Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 62  VGIRLTGGNKVG--IFVTAVQPGSPAS-LQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
           +GI +TGG + G  I ++ + PG PA    GL  GD IL VN ++++    +EAV  L  
Sbjct: 16  LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 75
Query: 119 LQDQIHLIV 127
            + +I   V
Sbjct: 76  QRGEIEFEV 84

>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human Homolog Of Discs Large Protein Length = 99

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 50  DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           +PR +   +  + +G  + GG +  GIF++ +  G PA L G L+ GD+I+ VN +D++ 
Sbjct: 7   EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRA 66
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEY 134
            + E+A   L +    + ++ Q R +EY
Sbjct: 67  ASHEQAAAALKNAGQAVTIVAQYRPEEY 94

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 51  PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           P+ + F   G VG +   G+   I+VT +  G  A   G LQ GDK+L VN + ++ +T 
Sbjct: 13  PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTH 71
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
           EEAV  L +  D ++L V      Y
Sbjct: 72  EEAVTALKNTSDFVYLKVAKPTSMY 96

>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1 Length = 98

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 51  PRFITFQKEGS-VGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PR  T +K  S  G  L +  +K G F+ +V P SPA   GL+  D+I++VN + M+G  
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 109 REEAVLFLLSLQDQIHLIVQNRR-DEY 134
             + V  + +  D+  L+V +R  DE+
Sbjct: 70  HGDVVSAIRAGGDETKLLVVDRETDEF 96

>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain Length = 103

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 62  VGIRLTGGNKVG--IFVTAVQPGSPAS-LQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
           +GI +TGG + G  I ++ + PG PA    GL  GD IL VN ++++    +EAV  L  
Sbjct: 23  LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 82
Query: 119 LQDQIHLIV 127
            + +I   V
Sbjct: 83  QRGEIEFEV 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	627
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-45
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-18
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	2e-33
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	8e-33
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	1e-05
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	5e-32
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-23
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	6e-32
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	8e-08
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	6e-06
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	1e-30
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	5e-21
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	3e-29
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-10
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	8e-04
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-27
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	5e-08
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	3e-05
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-26
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-23
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	7e-07
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	7e-26
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-22
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	6e-05
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-25
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	4e-13
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	9e-05
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	4e-23
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-08
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-05
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-22
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	4e-08
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	5e-07
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	7e-21
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	5e-06
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	7e-21
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	2e-13
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-07
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	9e-20
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	5e-14
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	1e-07
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-19
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-13
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-19
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	3e-08
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	5e-05
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-19
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	8e-15
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	2e-07
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	4e-19
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	6e-15
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	6e-11
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	4e-19
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	6e-06
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	5e-19
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	6e-08
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	7e-06
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	9e-19
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	5e-07
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	5e-05
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	2e-18
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	5e-08
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	3e-06
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	3e-18
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	8e-06
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	7e-05
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	3e-18
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	5e-09
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-06
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	5e-18
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	2e-08
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	9e-05
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	6e-18
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	7e-10
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	3e-05
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	7e-18
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	5e-09
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	1e-08
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	9e-18
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	5e-11
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	9e-18
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	5e-11
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	4e-06
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-17
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-08
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	2e-17
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-09
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	2e-04
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	2e-17
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	4e-08
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-06
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	2e-17
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	3e-08
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-05
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	3e-17
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	3e-17
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	2e-07
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	9e-06
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	3e-17
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	6e-06
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	5e-17
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	2e-06
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	4e-05
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	6e-17
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	5e-08
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	4e-06
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	6e-17
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-06
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	6e-17
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	8e-09
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	9e-08
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	6e-17
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-09
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-05
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	6e-17
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-10
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-06
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	7e-17
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	1e-08
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	1e-04
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	7e-17
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	3e-08
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-06
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	9e-17
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-06
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	5e-04
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	9e-17
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	1e-08
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	1e-04
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	1e-16
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	2e-08
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	2e-06
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	1e-16
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	5e-08
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	3e-07
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	1e-16
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	1e-16
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	5e-10
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	1e-05
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-16
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-09
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-04
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-16
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-08
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	2e-06
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	1e-16
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	1e-07
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	4e-06
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	1e-16
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	9e-10
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	8e-05
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	1e-16
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	7e-10
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-05
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	2e-16
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-08
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	4e-06
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	2e-16
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-07
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	4e-07
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-16
2fne_A	117	Multiple PDZ domain protein; structural protein, s	5e-08
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-06
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	3e-16
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	1e-05
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-16
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-09
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	1e-06
2opg_A	98	Multiple PDZ domain protein; structural protein, s	3e-16
2opg_A	98	Multiple PDZ domain protein; structural protein, s	1e-08
2opg_A	98	Multiple PDZ domain protein; structural protein, s	3e-06
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	3e-16
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-09
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-05
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	3e-16
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	3e-07
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	2e-05
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	4e-16
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-10
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-05
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	5e-16
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	1e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	1e-05
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	5e-16
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	1e-09
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	3e-05
2awx_A	105	Synapse associated protein 97; membrane protein, s	5e-16
2awx_A	105	Synapse associated protein 97; membrane protein, s	1e-10
2awx_A	105	Synapse associated protein 97; membrane protein, s	1e-06
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	8e-16
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	6e-06
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	5e-04
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	9e-16
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	3e-08
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	4e-08
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-15
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	7e-10
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	3e-06
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	1e-15
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	2e-07
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	1e-15
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	2e-10
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	5e-06
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	1e-15
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	1e-07
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	5e-05
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	1e-15
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	1e-05
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-15
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-07
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	8e-04
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	2e-15
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	7e-09
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	5e-07
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	2e-15
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-08
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	6e-04
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-15
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	8e-11
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	4e-06
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-15
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	5e-08
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	1e-06
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-15
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-11
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-07
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	3e-15
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	1e-05
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	3e-15
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	5e-10
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	3e-15
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	5e-06
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	3e-15
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	9e-06
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-15
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-08
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	1e-06
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	3e-15
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	3e-11
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-05
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	4e-15
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-08
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-05
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	5e-15
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	4e-11
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	4e-05
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	5e-15
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	2e-09
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	8e-07
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	5e-15
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-09
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	5e-05
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	5e-15
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-06
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	1e-05
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	6e-15
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	9e-11
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	2e-05
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	7e-15
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	8e-15
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-09
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	5e-06
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	8e-15
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-11
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-05
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	8e-15
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	7e-06
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-14
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-06
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	1e-14
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	1e-05
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-14
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	5e-10
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	7e-05
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-14
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	2e-07
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-04
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-14
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	5e-11
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-05
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-14
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	5e-06
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	3e-04
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-14
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-08
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-14
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	7e-07
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	7e-05
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	2e-14
2d90_A	102	PDZ domain containing protein 1; structural genomi	2e-14
2d90_A	102	PDZ domain containing protein 1; structural genomi	2e-05
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	3e-14
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	3e-05
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	4e-04
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	3e-14
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	2e-06
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	6e-06
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	3e-14
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-11
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	8e-05
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	3e-14
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	6e-06
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	4e-14
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	7e-09
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	4e-06
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	4e-14
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-06
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	6e-14
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-05
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	6e-14
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	9e-07
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	5e-04
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	6e-14
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	2e-05
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	4e-05
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	6e-14
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	2e-10
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	3e-06
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	7e-14
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-06
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-04
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	8e-14
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	5e-06
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	2e-04
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	1e-13
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	2e-10
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	5e-07
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	1e-13
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	1e-13
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-11
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	1e-13
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	2e-06
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	8e-06
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-13
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	7e-06
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	3e-04
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	2e-13
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-07
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	3e-06
2ego_A	96	General receptor for phosphoinositides 1- associat	3e-13
2ego_A	96	General receptor for phosphoinositides 1- associat	2e-06
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	3e-13
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	3e-10
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	7e-05
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	3e-13
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	5e-06
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	5e-13
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	4e-06
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	2e-05
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	6e-13
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	3e-05
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	6e-13
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	2e-06
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	7e-13
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	3e-05
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	2e-04
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	1e-12
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-06
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	1e-05
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-12
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	1e-05
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-12
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	6e-05
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	7e-04
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-12
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-04
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-12
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	3e-08
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	3e-12
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-06
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	3e-12
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	2e-06
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-05
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	4e-12
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	7e-08
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	1e-07
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	5e-12
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	1e-06
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	4e-06
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	6e-12
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	4e-08
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	6e-07
3khf_A	99	Microtubule-associated serine/threonine-protein ki	9e-12
3khf_A	99	Microtubule-associated serine/threonine-protein ki	1e-05
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	1e-11
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	8e-07
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	9e-05
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	2e-11
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-04
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-11
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-06
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	4e-05
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	8e-11
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-06
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-05
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	8e-11
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	2e-07
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	2e-10
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	3e-06
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	6e-04
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	3e-10
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	7e-07
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	7e-05
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	4e-10
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	5e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-06
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	5e-10
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-05
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	2e-04
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	6e-10
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	3e-04
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	1e-09
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	9e-06
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-04
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-09
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-05
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	2e-09
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	7e-04
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	2e-09
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	5e-06
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	4e-04
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3k50_A	403	Putative S41 protease; structural genomics, joint	2e-08
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	1e-07
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	2e-07
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	1e-04
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	4e-07
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	4e-07
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	1e-04
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	4e-07
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	1e-05
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	3e-05
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	8e-07
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	2e-06
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	3e-06
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	3e-06
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	3e-06
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	5e-06
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	8e-06
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	1e-05
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	4e-05
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	4e-05
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	5e-05
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	7e-05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	7e-05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	8e-04
2kl1_A	94	YLBL protein; structure genomics, structural genom	9e-05
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	9e-05
4fgm_A	597	Aminopeptidase N family protein; structural genomi	1e-04
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	2e-04
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	2e-04
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	3e-04
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	3e-04
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	6e-04

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  170 bits (430), Expect = 4e-45
 Identities = 121/716 (16%), Positives = 224/716 (31%), Gaps = 192/716 (26%)

Query: 38  SPDLFSIFFVEPDPRFITFQKEGS-VGIRLTGG-------NKVGIFVTAVQPGSPASLQG 89
           +P   +    E +   IT ++  S +G  + GG       +   IF+T + PG  A+  G
Sbjct: 47  APGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDG 106

Query: 90  -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA-----SQRG 143
            L+  D IL VN++D++ +T   AV  L      + L V  R+   E V+        +G
Sbjct: 107 RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKG 166

Query: 144 DSFHI--------------------------------KVNDRIMSANGLSLENVEYGTAV 171
             F I                                ++ D+I++ N + LE+V +  AV
Sbjct: 167 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 226

Query: 172 QVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS------------------------ 207
             L+++   V LKV +      S       +  S S                        
Sbjct: 227 AALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPT 286

Query: 208 ----------------------------RKKDDFGIIL-----GNKIFVKEVTHRLDNNA 234
                                       R     G  +     G  IF+  +        
Sbjct: 287 SPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILA---GGP 343

Query: 235 SPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTL 294
           +  + +L +GD +L +N       S ++A   + ++ + +++  +    +P  Y      
Sbjct: 344 ADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY---KPEEYSRFEAK 400

Query: 295 PGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLD 354
                  +     N S  +      +       +    +              +S    D
Sbjct: 401 IHD----LREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGF-LSQALSFRFGD 455

Query: 355 RPVSPINNSMDS-------LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRG 407
             V  + ++ D        +  +++    G IP+K R E                     
Sbjct: 456 --VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERRE------------------ 495

Query: 408 SFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLA 467
             + R +     S S S+   D            +YE V+     + RP+++ GP  D A
Sbjct: 496 --WSRLKAKDWGSSSGSQGREDS---------VLSYETVTQMEVHYARPIIILGPTKDRA 544

Query: 468 RDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMYQGKDSM----YQGKDSMYQ 523
            D LL +FPDKF +      +   T          ++      ++ M       K     
Sbjct: 545 NDDLLSEFPDKFGSC-----VPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAG 599

Query: 524 GKESMYQG------KDSMYQGK----DSMYQG---------------------KDSMYQG 552
              S   G      ++   QGK    D                          ++ +   
Sbjct: 600 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 659

Query: 553 KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
           K I +E   K F+++ KLE+ ++  F+  +     +  Y K + +IE      +W+
Sbjct: 660 KRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWV 715

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 88.4 bits (218), Expect = 2e-18
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 36  PGSPDLFSIFFVEPDPRFITFQKEG-SVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQP 92
           P + DL     +  +PR I   +    +G  + GG +  GIF++ +  G PA L G L+ 
Sbjct: 293 PVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRK 352

Query: 93  GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
           GD+IL VN +D++  + E+A + L +    + +I Q + +EY   
Sbjct: 353 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRF 397

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score =  129 bits (325), Expect = 2e-33
 Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 22/258 (8%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRG----SFFKRRRNSHRRSKS 422
           +GR+ +E ++GIIPN++RAE+LA+ +       +    S G    + F R R   R +K 
Sbjct: 54  MGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKK 113

Query: 423 LSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP 482
            ++   +D+       ++P YERV LR   F RPVV+ GPVAD+A  KL  + PD+F   
Sbjct: 114 TTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIA 173

Query: 483 RKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGK----DSMYQGKESMYQGKDS---M 535
                    T+  T       +      +    + K    D      E +   +     +
Sbjct: 174 E--------TVSRTDSPSKIIKLDT--VRVIAEKDKHALLDVTPSAIERLNYVQYYPIVV 223

Query: 536 YQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITL-SGVDVWYRKT 594
           +   +S    K          +    +L+ Q+QKL K  SH+FT TI L    D WY++ 
Sbjct: 224 FFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQEL 283

Query: 595 RELIEKQQSSPVWISETK 612
           + +I +QQ+ P+W +E +
Sbjct: 284 KAIIREQQTRPIWTAEDQ 301

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score =  121 bits (305), Expect = 8e-33
 Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 2/98 (2%)

Query: 48  EPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
            P  + + F+K  SVG+RL GGN VGIFV  V   SPA+ +GL+ GD+IL+VN++D   I
Sbjct: 27  RPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNI 86

Query: 108 TREEAVLFLLSLQ--DQIHLIVQNRRDEYEHVVASQRG 143
            REEAVLFLL L   +++ ++ Q ++D Y  +V S  G
Sbjct: 87  IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVG 124

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRRR 188
            A++ G    ++  D+I+  N +   N+    AV  L D   G  VT+  +++
Sbjct: 63  PAAKEG----LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 111

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score =  127 bits (319), Expect = 5e-32
 Identities = 113/440 (25%), Positives = 175/440 (39%), Gaps = 79/440 (17%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNASPGTHQ-LAEGDVLLKIN 251
             P    V+  K        +  GN   IFV  V        SP   + L EGD +L++N
Sbjct: 6   LRPSMKLVKFRKG-DSVGLRLAGGNDVGIFVAGVLE-----DSPAAKEGLEEGDQILRVN 59

Query: 252 NHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSS 311
           N     +  +EA   +    +   +TI  +  +   Y+        ++ Y+         
Sbjct: 60  NVDFTNIIREEAVLFLLDLPKGEEVTILAQ-KKKDVYRRIVESDVGDSFYIRTHFEY--- 115

Query: 312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDS----- 366
                +  +  G                      L  +  ++ R V  + N         
Sbjct: 116 -----EKESPYG----------------------LSFNKGEVFRVVDTLYNGKLGSWLAI 148

Query: 367 -LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSK 425
            +G+N++EV++GIIPNK RAE+LA+ Q+   K               R    R SK   +
Sbjct: 149 RIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADF-----WRFRGLRSSKRNLR 203

Query: 426 DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--- 482
              +D+      +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +      
Sbjct: 204 KSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE 263

Query: 483 --------RKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDS 534
                   R    I   TIK              Q K ++    D      + +   +  
Sbjct: 264 PRDAGTDQRSSGIIRLHTIKQIID----------QDKHALL---DVTPNAVDRLNYAQWY 310

Query: 535 ---MYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITL-SGVDVW 590
              ++   DS    K    +     ++   KL+E+S KL K   H+FT TI L S  D W
Sbjct: 311 PIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGW 370

Query: 591 YRKTRELIEKQQSSPVWISE 610
           Y   +E I++QQ+  VW+SE
Sbjct: 371 YGALKEAIQQQQNQLVWVSE 390

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score =  101 bits (253), Expect = 2e-23
 Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 46  FVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
            + P  + + F+K  SVG+RL GGN VGIFV  V   SPA+ +GL+ GD+IL+VN++D  
Sbjct: 5   ILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT 64

Query: 106 GITREEAVLFLLSLQDQIHL--IVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLE 163
            I REEAVLFLL L     +  + Q ++D Y  +V S  GDSF+I+ +      +   L 
Sbjct: 65  NIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL- 123

Query: 164 NVEYGTAVQVL 174
           +   G   +V+
Sbjct: 124 SFNKGEVFRVV 134

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  118 bits (298), Expect = 6e-32
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 47  VEPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
              +PR +  QK    +GI +  G K GI+V+ V  GS A   GL+ GD++L+ N ++++
Sbjct: 16  YVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLR 75

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
             T ++A L +    D I ++ Q     ++    S+ G S
Sbjct: 76  SATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPS 115

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +A Q G    ++  D+++  NG++L +     A  ++     T+T+  +  
Sbjct: 54  IAHQAG----LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYN 100

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 178 GSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNAS 235
           GS+ +    RR   P   EP+   V++ K  +     I+ G K  I+V +VT      + 
Sbjct: 1   GSSGSSGGERRKDRPYVEEPRH--VKVQKGSEPLGISIVSGEKGGIYVSKVTV----GSI 54

Query: 236 PGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
                L  GD LL+ N       + ++AR +I    + +++  +     P  +Q S+ 
Sbjct: 55  AHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQY---NPHVHQLSSH 109

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score =  124 bits (312), Expect = 1e-30
 Identities = 106/433 (24%), Positives = 172/433 (39%), Gaps = 68/433 (15%)

Query: 199 TLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTD 256
           ++++   +        +  GN   IFV  V      ++      L EGD +L++NN    
Sbjct: 1   SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLE----DSPAAKEGLEEGDQILRVNNVDFT 56

Query: 257 GMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPL--STNYSSQNL 314
            +  +EA   +    +   +TI  +  +   Y+        ++ Y+         S   L
Sbjct: 57  NIIREEAVLFLLDLPKGEEVTILAQ-KKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL 115

Query: 315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEV 374
                      + L +       A R                          +G+N++EV
Sbjct: 116 SFNKGEVFRVVDTLYNGKLGSWLAIR--------------------------IGKNHKEV 149

Query: 375 QKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFG 434
           ++GIIPNK RAE+LA+ Q+   K               R    R SK   +   +D+   
Sbjct: 150 ERGIIPNKNRAEQLASVQYTLPKTAGGDRADF-----WRFRGLRSSKRNLRKSREDLSAQ 204

Query: 435 DSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIK 494
              +KFPAYERV LR  GF+RPV +FGP+AD+AR+KL ++ PD +   +           
Sbjct: 205 PVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKS---------- 254

Query: 495 DTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMY----QGKDSMYQGK----------D 540
                + +       G   ++  K  + Q K ++        D +   +          D
Sbjct: 255 ---EPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPD 311

Query: 541 SMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITL-SGVDVWYRKTRELIE 599
           S    K    +     ++   KL+E+S KL K   H+FT TI L S  D WY   +E I+
Sbjct: 312 SKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQ 371

Query: 600 KQQSSPVWISETK 612
           +QQ+  VW+SE K
Sbjct: 372 QQQNQLVWVSEGK 384

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 95.4 bits (236), Expect = 5e-21
 Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 3/125 (2%)

Query: 52  RFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           + + F+K  SVG+RL GGN VGIFV  V   SPA+ +GL+ GD+IL+VN++D   I REE
Sbjct: 3   KLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 62

Query: 112 AVLFLLSLQDQIHL--IVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGT 169
           AVLFLL L     +  + Q ++D Y  +V S  GDSF+I+ +      +   L +   G 
Sbjct: 63  AVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL-SFNKGE 121

Query: 170 AVQVL 174
             +V+
Sbjct: 122 VFRVV 126

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score =  112 bits (283), Expect = 3e-29
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 50  DPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           DPR +   K+  G +G+RL   +  GIFV  VQ  SPASL GL+ GD++L++N  +  G 
Sbjct: 4   DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62

Query: 108 TREEAVLFLL-SLQDQIHLIVQ---------NRRDEYEHVVASQRGDSFH---------- 147
           + ++A   L  +  ++I + ++           +D   HV    +               
Sbjct: 63  SSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAAR 122

Query: 148 --IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
             +     I   NG ++  ++      +L  SG+ VT+ +
Sbjct: 123 NGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 15/132 (11%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDS-GSTVTLKVRRRIVLPASPEPQTLRVQLSK 206
           ++  D+++  NG +        A +VL+ + G  +T+ +R R        P    + + K
Sbjct: 45  LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR--------PFERTITMHK 96

Query: 207 SRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKL 266
                  G I  N          +  ++S   + L     + +IN     G+   +   +
Sbjct: 97  DSTG-HVGFIFKN-----GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 150

Query: 267 IDSSKEKLSLTI 278
           + +S   +++TI
Sbjct: 151 LSTSGTVVTITI 162

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 17/87 (19%)

Query: 202 VQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDNNASPGT----HQLAEGDVLLKINNHP 254
           V L K  +    G+ L    N IFV+ V           +      L  GD +L+IN   
Sbjct: 8   VILCK-DQDGKIGLRLKSIDNGIFVQLVQ--------ANSPASLVGLRFGDQVLQINGEN 58

Query: 255 TDGMSVKEARKLI-DSSKEKLSLTIRR 280
             G S  +A K++  +  EK+++TIR 
Sbjct: 59  CAGWSSDKAHKVLKQAFGEKITMTIRD 85

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score =  106 bits (267), Expect = 1e-27
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 37  GSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPG 93
           GSP+      +  +PR I   +    +G  + GG +  GIF++ +  G PA L G L+ G
Sbjct: 1   GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKG 60

Query: 94  DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           D+IL VN +D++  + E+A + L +    + +I Q + +EY    A+ R DS
Sbjct: 61  DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            A   G    ++  D+I+S NG+ L N  +  A   L+++G TVT+  + +
Sbjct: 50  PADLSG---ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 97

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
               +  R+ + +      F I+ G     IF+  +   L    +  + +L +GD +L +
Sbjct: 10  DIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFI---LAGGPADLSGELRKGDQILSV 66

Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTL 294
           N       S ++A   + ++ + +++  + +    + ++ ++ +
Sbjct: 67  NGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRV 110

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score =  105 bits (265), Expect = 2e-26
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 46/187 (24%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILK 98
             +   IT ++    +G  + GG       +   IF+T + PG  A+  G L+  D IL 
Sbjct: 3   SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62

Query: 99  VNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQ-----RGDSFHI----- 148
           VN++D++ +T   AV  L      + L V  R+   E V+  +     +G  F I     
Sbjct: 63  VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVG 122

Query: 149 ---------------------------KVNDRIMSANGLSLENVEYGTAVQVLRDSGSTV 181
                                      ++ D+I++ N + LE+V +  AV  L+++   V
Sbjct: 123 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 182

Query: 182 TLKVRRR 188
            LKV + 
Sbjct: 183 YLKVAKP 189

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 96.7 bits (241), Expect = 3e-23
 Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 16/149 (10%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS 207
           ++VND I+  N + +  V +  AV+ L+++GS V L V RR      P  + + ++L K 
Sbjct: 54  LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP----PAEKVMEIKLIKG 109

Query: 208 RKKDDFGIILGNK---------IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGM 258
            K   F I  G           I+V ++       A+    +L  GD +L +N+   + +
Sbjct: 110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIE---GGAAHKDGRLQIGDKILAVNSVGLEDV 166

Query: 259 SVKEARKLIDSSKEKLSLTIRREVPRPTA 287
             ++A   + ++ + + L + +     T 
Sbjct: 167 MHEDAVAALKNTYDVVYLKVAKPSNAETM 195

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 12/114 (10%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIILGN---------KIFVKEVTHRLDNNASPGTHQLAEG 244
           S   +   + L +      F I  G           IF+ ++   +   A+    +L   
Sbjct: 1   SGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKI---IPGGAAAQDGRLRVN 57

Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKE 298
           D +L +N      ++   A + +  +   + L + R  P      E   + G +
Sbjct: 58  DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPK 111

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score =  104 bits (261), Expect = 7e-26
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 49/196 (25%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
                 +   K+   ++G+ ++GG        V+ ++ G  A+    L  GD I  VN +
Sbjct: 5   FKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGI 64

Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHI-------------- 148
           ++     +E +  L ++ +++ L V+          +S    +  +              
Sbjct: 65  NLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIR 124

Query: 149 ------------------------------KVNDRIMSANGLSLENVEYGTAVQVLRDSG 178
                                         K  DR++S +G+ L    +  A+ +L+  G
Sbjct: 125 GGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG 184

Query: 179 STVTLKVRRRIVLPAS 194
              TL +   + +  S
Sbjct: 185 QEATLLIEYDVSVMDS 200

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 94.8 bits (236), Expect = 1e-22
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE- 196
           +A++      + V D I + NG++L    +   + +L++ G  V L+V   +   +    
Sbjct: 45  IAARSDQ---LDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGS 101

Query: 197 ---PQTLRVQLSKSRKKDDFGIILGNK--------IFVKEVTHRLDNNASPGTHQLAEGD 245
               +T+ V L K      F I  G          + +  V        +     +  GD
Sbjct: 102 SVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRP---GGPADREGTIKPGD 158

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
            LL ++     G +  EA  ++    ++ +L I  +V 
Sbjct: 159 RLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVS 196

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 17  VGIRLTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGS-VGIRLTGG------ 69
           + +    G +V + V       P       V      +T  KEG+  G  + GG      
Sbjct: 75  ISLLKNVGERVVLEV--EYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRN 132

Query: 70  NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
               + +T V+PG PA  +G ++PGD++L V+ + + G T  EA+  L     +  L+++
Sbjct: 133 KSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIE 192

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 20/116 (17%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPG-----THQLA 242
                +  V+L K ++    G+ +        K  V  +          G     + QL 
Sbjct: 3   GSFKGSTVVELMK-KEGTTLGLTVSGGIDKDGKPRVSNLR--------QGGIAARSDQLD 53

Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKE 298
            GD +  +N          E   L+ +  E++ L +  E+P  +    S      E
Sbjct: 54  VGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVE 109

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score =  102 bits (257), Expect = 2e-25
 Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 61/244 (25%)

Query: 47  VEPDPRFITFQKE--GSVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKIL 97
           V  +   +    +     GI+L G             ++ ++  SPA   G LQ GD+++
Sbjct: 3   VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 62

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSA 157
            +N +  +  T EEA   L        + ++   D  E V+      +FH+K+  +    
Sbjct: 63  AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI--PSSGTFHVKLPKKHSVE 120

Query: 158 NGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL 217
            G+++ +                                                     
Sbjct: 121 LGITISSPSSRK-----------------------------------------------P 133

Query: 218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 277
           G+ + + ++      + +  T  L  GD LL I+N   D  S+++A +++   ++ + L 
Sbjct: 134 GDPLVISDIKK---GSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 190

Query: 278 IRRE 281
           IR++
Sbjct: 191 IRKD 194

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 21  LTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGG----NKVGIFV 76
           L   +        ++    +           +         +GI ++          + +
Sbjct: 81  LRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVE-LGITISSPSSRKPGDPLVI 139

Query: 77  TAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
           + ++ GS A   G L+ GDK+L ++++ +   + E+AV  L   +D + L +  R+DE
Sbjct: 140 SDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI--RKDE 195

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIIL----------GNKIFVKEVTHRLDNNASPGTHQLAEG 244
              +T  V L+       FGI L           +   +  +     ++ +     L  G
Sbjct: 3   VHTETTEVVLTADPVTG-FGIQLQGSVFATETLSSPPLISYIEA---DSPAERCGVLQIG 58

Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
           D ++ IN  PT+  + +EA +L+  S     +T+  E    
Sbjct: 59  DRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA 99

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 93.1 bits (232), Expect = 4e-23
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 47  VEPDPRFITFQK-EGSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
           +  +PR I   +    +G  + GG    GIF++ +  G PA L G L+ GD+IL VN +D
Sbjct: 8   IPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVD 67

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA 139
           ++  + E+A + L +    + +I Q + +EY    A
Sbjct: 68  LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 103

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            A   G    ++  D+I+S NG+ L N  +  A   L+++G TVT+  + +
Sbjct: 47  PADLSG---ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 94

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
               +  R+ + +      F I+ G     IF+  +   L    +  + +L +GD +L +
Sbjct: 7   DIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFI---LAGGPADLSGELRKGDQILSV 63

Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQES 291
           N       S ++A   + ++ + +++  + + P   +  E+
Sbjct: 64  NGVDLRNASHEQAAIALKNAGQTVTIIAQYK-PEEYSRFEA 103

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 92.1 bits (229), Expect = 2e-22
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
             +PR I   K    +G  + GG +  GIFV+ +  G PA L G L+ GD+IL VN +++
Sbjct: 13  AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNL 72

Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
           +  T E+A   L      + ++ Q R +EY    +S
Sbjct: 73  RNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESS 108

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            A   G    ++  DRI+S NG++L N  +  A   L+ +G +VT+  + R
Sbjct: 51  PADLSG---ELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR 98

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
           P     +  ++ L K      F I+ G     IFV  +   L    +  + +L  GD +L
Sbjct: 9   PGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFI---LAGGPADLSGELRRGDRIL 65

Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
            +N       + ++A   +  + + +++  +      + ++ S    G
Sbjct: 66  SVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPSSG 113

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 87.0 bits (216), Expect = 7e-21
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           +  PR +T +K     +G  + GG  +++GIF++ V P S A   GLQ GD++L VND+D
Sbjct: 13  QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVD 72

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRD 132
            + I   +AV  L +   +I + V+    
Sbjct: 73  FQDIEHSKAVEILKT-AREISMRVRFFSG 100

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 10/51 (19%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            A + G    ++  D++++ N +  +++E+  AV++L+ +   ++++VR  
Sbjct: 53  DAHRAG----LQEGDQVLAVNDVDFQDIEHSKAVEILK-TAREISMRVRFF 98

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 86.2 bits (214), Expect = 7e-21
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 200 LRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMS 259
           + V L KSR  +++G+ LG++IFVKE+T       +     L EGD++LKIN   T+ MS
Sbjct: 2   IGVLLMKSRANEEYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMS 58

Query: 260 VKEARKLIDSSKEKLSLTIRREVPRPTAYQ 289
           + +ARKLI+ S+ KL L + R++     + 
Sbjct: 59  LTDARKLIEKSRGKLQLVVLRDLEHHHHHH 88

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 54  ITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
           +   K   +    L  G+   IFV  +     A+  G L  GD ILK+N    + ++  +
Sbjct: 4   VLLMKSRANEEYGLRLGS--QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTD 61

Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEH 136
           A   +   + ++ L+V    + + H
Sbjct: 62  ARKLIEKSRGKLQLVVLRDLEHHHH 86

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           +A++ G   ++   D I+  NG   EN+    A +++  S   + L V R +
Sbjct: 33  LATKDG---NLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDL 81

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 83.2 bits (206), Expect = 9e-20
 Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 198 QTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDG 257
           +  +V L KS K +++G+ L + IFVKE++    ++ +     + EGDV+LKIN   T+ 
Sbjct: 2   KPTKVTLVKSAKNEEYGLRLASHIFVKEIS---QDSLAARDGNIQEGDVVLKINGTVTEN 58

Query: 258 MSVKEARKLIDSSKEKLSLTIRREVPRPT 286
           MS+ +A+ LI+ SK KL + ++R+     
Sbjct: 59  MSLTDAKTLIERSKGKLKMVVQRDERATL 87

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 51  PRFITFQKEG---SVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           P  +T  K       G+RL       IFV  +   S A+  G +Q GD +LK+N    + 
Sbjct: 3   PTKVTLVKSAKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTEN 58

Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDE 133
           ++  +A   +   + ++ ++VQ  RDE
Sbjct: 59  MSLTDAKTLIERSKGKLKMVVQ--RDE 83

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           +A++ G   +I+  D ++  NG   EN+    A  ++  S   + + V+R         P
Sbjct: 35  LAARDG---NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERATLLNVP 91

Query: 198 Q 198
            
Sbjct: 92  D 92

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 86.5 bits (214), Expect = 1e-19
 Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 41/184 (22%)

Query: 54  ITFQKEG-SVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM--K 105
           I  + E   +G+ + GG       G  +T V P    +    L+  D I  +N   +   
Sbjct: 22  IELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVG 81

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV-------ASQRGDSFHI---------- 148
            +T  +      +  ++   +   R D  E           + +     +          
Sbjct: 82  SMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIA 141

Query: 149 --------------KVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR--IVLP 192
                         +  D I   NG +LE + +     + + +   V+++V R    +  
Sbjct: 142 DLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPTLRT 201

Query: 193 ASPE 196
            +P+
Sbjct: 202 EAPK 205

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 52/175 (29%)

Query: 9   ITFQKEG-SVGIRLTGGN----KVGIFVTAVQPGSP------------------------ 39
           I  + E   +G+ + GG       G  +T V P                           
Sbjct: 22  IELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVG 81

Query: 40  ---------------------DLFSIFFVEPDPRFITFQKEGSVGIRLT-GGNKVGIFVT 77
                                 +F     E +   +   K+    + L+   N++G  + 
Sbjct: 82  SMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIA 141

Query: 78  AVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
            +  G    +   LQ GD I K N   ++G+  +           ++ + V   +
Sbjct: 142 DLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPK 196

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 82.4 bits (204), Expect = 2e-19
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
                 +  +K   G +G  + GG  + +GIFV+ V+ GS A   GL  GDKI +VN + 
Sbjct: 8   SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLS 67

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR 131
           ++  T   AV  L S   ++H++V+   
Sbjct: 68  LESTTMGSAVKVLTS-SSRLHMMVRRMG 94

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           + V D+I   NGLSLE+   G+AV+VL  S S + + VRR    P+S
Sbjct: 54  LCVGDKITEVNGLSLESTTMGSAVKVLT-SSSRLHMMVRRMGSGPSS 99

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 192 PASPEPQTLR-VQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGT----HQ 240
             S     +  V++ KS      G  + G       IFV +V          G+      
Sbjct: 3   SGSSGSDIIHSVRVEKS-PAGRLGFSVRGGSEHGLGIFVSKVE--------EGSSAERAG 53

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
           L  GD + ++N    +  ++  A K++ SS   L + +RR    P++
Sbjct: 54  LCVGDKITEVNGLSLESTTMGSAVKVLTSSSR-LHMMVRRMGSGPSS 99

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 81.6 bits (202), Expect = 3e-19
 Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
           +V L KSRK +++G+ L + IFVKE++    ++ +     + EGDV+LKIN   T+ MS+
Sbjct: 3   KVTLVKSRKNEEYGLRLASHIFVKEIS---QDSLAARDGNIQEGDVVLKINGTVTENMSL 59

Query: 261 KEARKLIDSSKEKLSLTIRRE 281
            +A+ LI+ SK KL + ++R+
Sbjct: 60  TDAKTLIERSKGKLKMVVQRD 80

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 68.8 bits (169), Expect = 8e-15
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 57  QKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLF 115
           +K    G+RL       IFV  +   S A+  G +Q GD +LK+N    + ++  +A   
Sbjct: 10  RKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTL 65

Query: 116 LLSLQDQIHLIVQNRRDE 133
           +   + ++ ++V  +RDE
Sbjct: 66  IERSKGKLKMVV--QRDE 81

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           +A++ G   +I+  D ++  NG   EN+    A  ++  S   + + V+R
Sbjct: 33  LAARDG---NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 88.9 bits (219), Expect = 4e-19
 Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 29/166 (17%)

Query: 49  PDPRFITFQKEGSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
                +   K   +G+ +           + +  +  G PA+  G L  GD+I+ +N   
Sbjct: 205 CKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTS 264

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDE-YEHVVASQRGDSFH--------------- 147
           + G+        +  L++Q  + +          V+  +    +                
Sbjct: 265 LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMR 324

Query: 148 --------IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
                   ++V  RI+  NG S+    +   VQ L +S   + +K 
Sbjct: 325 GGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 76.2 bits (186), Expect = 6e-15
 Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 12/148 (8%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS 207
           + + D+IMS NG SL  +   T   +++   +   +K+           P    V + + 
Sbjct: 251 LSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIV------SCPPVTTVLIKRP 304

Query: 208 RKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 267
             K   G  + N I        L          +  G  +++IN       + ++  + +
Sbjct: 305 DLKYQLGFSVQNGIICS-----LMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQAL 359

Query: 268 DSSKEKLSLTI-RREVPRPTAYQESTTL 294
            +S  ++ +      + R    QE+   
Sbjct: 360 SNSVGEIHMKTMPAAMFRLLTGQETPLY 387

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 63.5 bits (153), Expect = 6e-11
 Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 49  PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           P    +  + +    +   G +     + ++  G  A   G++ G +I+++N   +    
Sbjct: 295 PVTTVLIKRPDLKYQL---GFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATA 351

Query: 109 REEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQ 141
            E+ V  L +   +IH+        +  +   +
Sbjct: 352 HEKIVQALSNSVGEIHMKTM-PAAMFRLLTGQE 383

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 82.1 bits (203), Expect = 4e-19
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 47  VEPDPRFITFQKEG--SVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDM 102
            E   + +     G   +G  ++ G   K GIF++ V+PGS ++  GL+ GD+I++VN +
Sbjct: 12  RENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGV 71

Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
           D   +  +EAV  L S +     IV     E  
Sbjct: 72  DFSNLDHKEAVNVLKSSRSLTISIVAAAGRELF 104

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-TVTLKVRRRIVLPASPEPQ 198
           +++ D+I+  NG+   N+++  AV VL+ S S T+++       L  +    
Sbjct: 59  LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSG 110

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 81.2 bits (201), Expect = 5e-19
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 48  EPDPRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
              P  +T +     G RL GG      + ++ V  GS A+L  L PGD I  +N    +
Sbjct: 6   SGMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTE 65

Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
            +T  EA   +    D + L V 
Sbjct: 66  LMTHLEAQNRIKGCHDHLTLSVS 88

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 15/95 (15%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASP-GTHQLAEGD 245
           +        V L        +G  ++G +     + +  V        S      L  GD
Sbjct: 3   SGSSGMPHSVTLRGPS---PWGFRLVGGRDFSAPLTISRVHAG-----SKAALAALCPGD 54

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           ++  IN   T+ M+  EA+  I    + L+L++  
Sbjct: 55  LIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           +   D I + NG S E + +  A   ++     +TL V  
Sbjct: 50  LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 80.9 bits (200), Expect = 9e-19
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 48  EPDPRFITFQKE---GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDM 102
             + R ++ ++      +G  + GG  + VGI+V+ V+PGS A  +GL+ GD+IL+VND 
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65

Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRR 131
            +  +T  EAV  L   +  +  +    R
Sbjct: 66  SLARVTHAEAVKALKGSKKLVLSVYSAGR 94

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTV-TLKVRRRIVLPAS 194
           ++V D+I+  N  SL  V +  AV+ L+ S   V ++    RI  P+S
Sbjct: 53  LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISGPSS 100

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 13/102 (12%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDV 246
           +    +   V L +++  +  G  I G       I+V  V    +  +      L  GD 
Sbjct: 3   SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLV----EPGSLAEKEGLRVGDQ 58

Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR--EVPRPT 286
           +L++N+     ++  EA K +  SK+ L L++     +  P+
Sbjct: 59  ILRVNDKSLARVTHAEAVKALKGSKK-LVLSVYSAGRISGPS 99

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 51  PRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
              +T    G  G RL GG    + + ++ + PGS A+   L  GD ++ ++ ++   +T
Sbjct: 2   AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61

Query: 109 REEAVLFLLSLQDQIHLIVQNRR 131
             EA   + S    + L +Q  +
Sbjct: 62  HLEAQNKIKSASYNLSLTLQKSK 84

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           QL++GD+++ I+   TD M+  EA+  I S+   LSLT+++
Sbjct: 42  QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQK 82

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 4/41 (9%), Positives = 22/41 (53%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   D +++ +G++ + + +  A   ++ +   ++L +++ 
Sbjct: 43  LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS 83

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 50  DPRFITFQKEGS---VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
           D R    Q  G     G  +      GIFV +V+ GSPA    LQ  D+I+ +N+     
Sbjct: 4   DMRISINQTPGKSLDFGFTIKWDIP-GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSY 62

Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRD 132
              +E    +   Q+  HL++  RR 
Sbjct: 63  NDSKEWEEAMAKAQETGHLVMDVRRY 88

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 18/91 (19%)

Query: 200 LRVQLS-KSRKKDDFGI-ILGNK--IFVKEVTHRLDNNASPGT----HQLAEGDVLLKIN 251
           +R+ ++    K  DFG  I  +   IFV  V          G+     QL   D ++ IN
Sbjct: 5   MRISINQTPGKSLDFGFTIKWDIPGIFVASVE--------AGSPAEFSQLQVDDEIIAIN 56

Query: 252 NHPTDGMSVKEARKLIDSSKE--KLSLTIRR 280
           N        KE  + +  ++E   L + +RR
Sbjct: 57  NTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL--KVRR 187
           ++V+D I++ N       +     + +  +  T  L   VRR
Sbjct: 46  LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 47  VEPDPRFITFQKEGS-VGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
                  +    +GS +G  + GG   G+ V  + PG  A   G LQ GD ILK+   ++
Sbjct: 12  CWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71

Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
           +G+T E+    L +  + + ++V         V + 
Sbjct: 72  QGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
           ++  D I+   G +++ +      QVLR+ G++V + V R      S    
Sbjct: 57  LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
                  V+L        FGI+ G    + V+ +   +    +    +L  GD +LKI  
Sbjct: 12  CWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTI---VPGGLADRDGRLQTGDHILKIGG 68

Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
               GM+ ++  +++ +    + + + R+     +     +
Sbjct: 69  TNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPS 109

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 48  EPDPRFITFQKEGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
           EP+   +T +K+  +G+ +        +K+GI+V +V  G  A + G L  GD++L V+ 
Sbjct: 9   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
             + G+++E A   +      + L V  +     
Sbjct: 69  RSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRR 102

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   D+++S +G SL  +    A +++  + S VTL+V ++
Sbjct: 57  LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 97

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGTHQLA 242
               EP+ + V L   +K++  G+ I+  K        I+VK V   +   A+    +LA
Sbjct: 5   SDHKEPEIITVTL---KKQNGMGLSIVAAKGAGQDKLGIYVKSV---VKGGAADVDGRLA 58

Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
            GD LL ++     G+S + A +L+  +   ++L + ++  
Sbjct: 59  AGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 99

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 78.1 bits (193), Expect = 6e-18
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
               R +T +K   G +GI + GG  NK+ I ++ +  G  A     L  GD IL VN  
Sbjct: 2   SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61

Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRR 131
           D+   T +EAV  L     ++ L V+  +
Sbjct: 62  DLSSATHDEAVQALKKTGKEVVLEVKYMK 90

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            A Q      + V D I+S NG  L +  +  AVQ L+ +G  V L+V+  
Sbjct: 42  AADQTE---ALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM 89

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
             Q  RV + K       GI I G +     I + ++       A+  T  L  GD +L 
Sbjct: 2   SLQRRRVTVRK-ADAGGLGISIKGGRENKMPILISKI---FKGLAADQTEALFVGDAILS 57

Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           +N       +  EA + +  + +++ L ++ 
Sbjct: 58  VNGEDLSSATHDEAVQALKKTGKEVVLEVKY 88

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 77.8 bits (192), Expect = 7e-18
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 50  DPRFITFQKE---GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           +   +T  K+      G  +  G  + G++V  ++P  P  L GL+P D++L+VN +  +
Sbjct: 6   ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTR 65

Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
                  V  +    +++ L++ 
Sbjct: 66  DFDCCLVVPLIAESGNKLDLVIS 88

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +K  DR++  N +   + +    V ++ +SG+ + L + R 
Sbjct: 50  LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 194 SPEP-QTLRVQLSKSRKKDDFGI-ILGNK----IFVKEVTHRLDNNASPGTH-QLAEGDV 246
           SP P +  +V L K    +DFG  +        ++VK +       A PG    L   D 
Sbjct: 1   SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRP-----AGPGDLGGLKPYDR 55

Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           LL++N+  T          LI  S  KL L I R
Sbjct: 56  LLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 77.7 bits (192), Expect = 9e-18
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 50  DPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKILKVN 100
           +   +T  ++ G +GI + GG        +  GIF++ V    PA+  G++ GDK+L+VN
Sbjct: 3   EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
            + ++G    EAV  L      + + V   R+
Sbjct: 63  GVALQGAEHHEAVEALRGAGTAVQMRVWRERE 94

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 14/41 (34%), Positives = 28/41 (68%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++V D+++  NG++L+  E+  AV+ LR +G+ V ++V R 
Sbjct: 52  VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 92

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 78.2 bits (193), Expect = 9e-18
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 47  VEPDPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKIL 97
           +E +   +T  ++ G +GI + GG        +  GIF++ V    PA+  G++ GDK+L
Sbjct: 12  IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLL 71

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
           +VN + ++G    EAV  L      + + V       
Sbjct: 72  EVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPS 108

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 14/41 (34%), Positives = 28/41 (68%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++V D+++  NG++L+  E+  AV+ LR +G+ V ++V R 
Sbjct: 64  VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 104

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 18/108 (16%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTH 239
           PA  E + L + + +       GI I G K           IF+  V    +   +    
Sbjct: 9   PARIEEEELTLTILRQTGG--LGISIAGGKGSTPYKGDDEGIFISRV---SEEGPAARA- 62

Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
            +  GD LL++N     G    EA + +  +   + + + RE    + 
Sbjct: 63  GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPSSG 110

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 43  SIFFVEPDPRFITFQKE--GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGD 94
           +++F     + +  QK+   S+G+ + GG       + I+V +V+PG   S  G ++ GD
Sbjct: 17  NLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGD 76

Query: 95  KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
            +L V+ +++  ++R EAV  L      I L     ++
Sbjct: 77  ILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           IK  D +++ +G+ L  V    AV +L+ + S++ LK    
Sbjct: 72  IKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEV 112

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 49  PDPRFITFQKEG--SVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
              R +   KE    +GI +TGG  + V I ++ + PG PA   G L  GD IL VN ++
Sbjct: 8   GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 67

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEH 136
           ++    +EAV  L   + +I   V     E+ H
Sbjct: 68  LRDTKHKEAVTILSQQRGEIEFEVVYVALEHHH 100

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           + V D I++ NG++L + ++  AV +L      +  +V   
Sbjct: 54  LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 94

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 3/73 (4%)

Query: 218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 277
           G  I + E+        +     L  GD +L +N         KEA  ++   + ++   
Sbjct: 34  GVPILISEI---HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 90

Query: 278 IRREVPRPTAYQE 290
           +         +  
Sbjct: 91  VVYVALEHHHHHH 103

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           +        G RL+GG      + +T + PGS A+   L PGD IL ++    + +T  +
Sbjct: 9   VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 68

Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           A   + +   Q+ L +  R +          G S
Sbjct: 69  AQDRIKAASYQLCLKID-RAETRLWSPQVSSGPS 101

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 195 PEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
               +  V L        +G  + G       + +  +T    + A+     L  GDV+L
Sbjct: 2   SSGSSGNVVLPGPAP---WGFRLSGGIDFNQPLVITRITP--GSKAAAA--NLCPGDVIL 54

Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
            I+   T+ M+  +A+  I ++  +L L I R   R 
Sbjct: 55  AIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL 91

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 10/50 (20%), Positives = 23/50 (46%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           +   D I++ +G   E++ +  A   ++ +   + LK+ R      SP+ 
Sbjct: 47  LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWSPQV 96

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           I  Q  G  G RL GG   +  + ++ V PGS A+L  L  GD I  ++  +   +T  E
Sbjct: 7   IDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLE 66

Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEHV 137
           A   +    D + L V  R +    +
Sbjct: 67  AQNRIKGCTDNLTLTVA-RSEHESDL 91

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
           L  GDV+  I+   T  M+  EA+  I    + L+LT+ R    
Sbjct: 45  LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHE 88

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++ + D I + +G +  N+ +  A   ++     +TL V R 
Sbjct: 44  NLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS 85

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 56/281 (19%), Positives = 104/281 (37%), Gaps = 77/281 (27%)

Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
           +  +++    G IP+K R E                       + R +     S S S+ 
Sbjct: 47  VHSDSETDDIGFIPSKRRVER--------------------REWSRLKAKDWGSSSGSQG 86

Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFS------ 480
             D V          +YE V+     + RP+++ GP  D A D LL +FPDKF       
Sbjct: 87  REDSV---------LSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHT 137

Query: 481 --APRK-------FNFILWATIKDT--AMYQSSK--EPGMYQGKDSMYQG--KDSMYQGK 525
               R+       ++F+   + ++      Q+ K  E G Y        G    S+   +
Sbjct: 138 TRPKREYEIDGRDYHFV---SSREKMEKDIQAHKFIEAGQYNSH---LYGTSVQSV---R 188

Query: 526 ESMYQGKD--------SMYQGKDSMYQG---------KDSMYQG-KDIKKEVKIKLFEQS 567
           E   QGK         ++ + + +              +++ +  K I +E   K F+++
Sbjct: 189 EVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRA 248

Query: 568 QKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
            KLE+ ++  F+  +     +  Y K + +IE      +W+
Sbjct: 249 TKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWV 289

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 43  SIFFVEPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
           +++F    P  +T QK+    +GI + GG      +++  V   +PA+L G +  GD+I 
Sbjct: 17  NLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEIT 76

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
            VN   +KG T+ E    +  ++ ++ +   
Sbjct: 77  GVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 107

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   D I   NG S++        +++++    VT+   + 
Sbjct: 69  VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 109

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
           S  P    V L K   ++  GI I G       +++ +V    DN  +     +A GD +
Sbjct: 22  SMVPGK--VTLQK-DAQNLIGISIGGGAQYCPCLYIVQV---FDNTPAALDGTVAAGDEI 75

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
             +N     G +  E  K+I   K ++++   +   
Sbjct: 76  TGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 111

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
              PR     KE GS G  L     K G+++T + P   A   G+   D +++VN  +++
Sbjct: 6   SGQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVE 65

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEH 136
             + EE V  +     ++  ++ ++  +  H
Sbjct: 66  DASHEEVVEKVKKSGSRVMFLLVDKETDKRH 96

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +  +D ++  NG ++E+  +   V+ ++ SGS V   +  +
Sbjct: 50  VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDK 90

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 76.8 bits (189), Expect = 5e-17
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 48  EPDPRFITFQKEGSV--GIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
             D + +          G+ + GG    +GI++T V PGS A   GL+ GD+IL+VN   
Sbjct: 18  GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRS 77

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR 131
              I  +EAV  L S    + L V++  
Sbjct: 78  FLNILHDEAVRLLKS-SRHLILTVKDVG 104

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           +KV D+I+  NG S  N+ +  AV++L+ S   + L V+    LP +   
Sbjct: 64  LKVGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVKDVGRLPHARTT 112

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 23/129 (17%)

Query: 178 GSTVTLKVRRRIV-LPASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRL 230
           GS+ +   RR  + L    + + + + L   R     G+ I G       I++  V    
Sbjct: 1   GSSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRS---LGLTIRGGAEYGLGIYITGVD--- 54

Query: 231 DNNASPGT----HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
                PG+      L  GD +L++N      +   EA +L+ SS+  L LT++     P 
Sbjct: 55  -----PGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVKDVGRLPH 108

Query: 287 AYQESTTLP 295
           A        
Sbjct: 109 ARTTVDETK 117

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 75.4 bits (186), Expect = 6e-17
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 51  PRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
              +        G R+TGG      I VT V     A    L+PGD I+ +N    +G+ 
Sbjct: 3   ALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGML 62

Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
             EA   +      + L +   R  
Sbjct: 63  HAEAQSKIRQSPSPLRLQL--DRIT 85

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           L  GD+++ IN    +GM   EA+  I  S   L L + R
Sbjct: 44  LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR 83

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           ++  D I++ NG S E + +  A   +R S S + L++ R
Sbjct: 44  LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR 83

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 75.4 bits (186), Expect = 6e-17
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 51  PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PR    +K     G  L G   K+G ++  V+PGSPA   GL  GD++++VN  +++  T
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63

Query: 109 REEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
            ++ V  + +  + + L+V    +  E +
Sbjct: 64  HQQVVSRIRAALNAVRLLVV-DPETDEQL 91

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   DR++  NG ++E   +   V  +R + + V L V   
Sbjct: 45  LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 75.4 bits (186), Expect = 6e-17
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 50  DPRFITFQKE---GSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
           +   +   K      +GI+L    ++ G+F+  +  G  A+  G L   D++L +N  D+
Sbjct: 3   EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62

Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
           K  T E A   + +  ++++L +         +
Sbjct: 63  KYGTPELAAQIIQASGERVNLTIARPGKPEIEL 95

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 52.3 bits (126), Expect = 8e-09
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
           +  NDR+++ NG  L+      A Q+++ SG  V L + R    P  PE +
Sbjct: 48  LSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIAR----PGKPEIE 94

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 198 QTLRVQLSKSRKKDDFGIILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
           + L+V L K    +  GI L  +     +F+ ++   L+   +    +L+  D +L IN 
Sbjct: 3   EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDL---LEGGLAAQDGRLSSNDRVLAING 59

Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
           H     + + A ++I +S E+++LTI R   
Sbjct: 60  HDLKYGTPELAAQIIQASGERVNLTIARPGK 90

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 76.2 bits (188), Expect = 6e-17
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 43  SIFFVEPDPRFITFQKE--GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGD 94
           +++F     R +  +K    S+GI + GG       V IF+  + P   A+    L+ GD
Sbjct: 17  NLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGD 76

Query: 95  KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138
           +I+ +     +G+T  +AV  L +    I + V    D  E  V
Sbjct: 77  RIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETSV 120

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++V DRI++  G S E + +  AV +L+++  ++ ++V   
Sbjct: 72  LRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 13/104 (12%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGTHQLAE 243
                    V++ K    D  GI I G          IF+  +        +  T +L  
Sbjct: 19  YFQSMGLRTVEMKKG-PTDSLGISIAGGVGSPLGDVPIFIAMM---HPTGVAAQTQKLRV 74

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
           GD ++ I    T+GM+  +A  L+ ++   + + +         
Sbjct: 75  GDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSET 118

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 75.9 bits (187), Expect = 6e-17
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 12/96 (12%)

Query: 49  PDPRFITFQKE-GSVGIRLTGG----------NKVGIFVTAVQPGSPASLQG-LQPGDKI 96
                +   ++ GS+G  + GG          +  GIFV+ +    PA+ +G LQ  D+I
Sbjct: 7   GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66

Query: 97  LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           ++VN  D+   T ++AV    + ++ I + V  R  
Sbjct: 67  IEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           ++++DRI+  NG  L    +  AV+  + +   + ++V RR   P+S
Sbjct: 60  LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS 106

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK------------IFVKEVTHRLDNNASPGTHQ 240
           +    ++L + L +      F II G              IFV ++   +D+  +     
Sbjct: 3   SGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKI---VDSGPAAKEGG 59

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
           L   D ++++N       +  +A +   ++KE + + + R    P
Sbjct: 60  LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGP 104

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 75.4 bits (186), Expect = 7e-17
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 50  DPRFITFQKE--GSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
           D   I  QK+    +G+ + G  N  G+FV+ +  G  A   G L  GD+IL VN  D++
Sbjct: 4   DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDE 133
             T+E     L      + L V      
Sbjct: 64  NATQEAVAALLKCSLGTVTLEVGRISTY 91

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   D+I+  NG  + N        +L+ S  TVTL+V R 
Sbjct: 48  LMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRI 88

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
            TL + L K   K   G+ I+G +    +FV ++   +    +    +L +GD +L +N 
Sbjct: 4   DTLTIGLQKKPGKG-LGLSIVGKRNDTGVFVSDI---VKGGIADADGRLMQGDQILMVNG 59

Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
                 + +    L+  S   ++L + R 
Sbjct: 60  EDVRNATQEAVAALLKCSLGTVTLEVGRI 88

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 75.0 bits (185), Expect = 7e-17
 Identities = 16/81 (19%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           ++       G RL GG    + + +++++ G  A+   ++ GD +L ++ ++ +G+T  E
Sbjct: 7   VSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLE 66

Query: 112 AVLFLLSLQDQIHLIVQNRRD 132
           A   +      +++ +Q   D
Sbjct: 67  AQNKIKGCTGSLNMTLQRESD 87

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
           +  GDV+L I+     GM+  EA+  I      L++T++RE
Sbjct: 45  VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE 85

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 5/41 (12%), Positives = 23/41 (56%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +++ D ++S +G++ + + +  A   ++    ++ + ++R 
Sbjct: 45  VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE 85

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 78.1 bits (192), Expect = 9e-17
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 48  EPDPRFITFQKEG--SVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
               + +   +     +G+ + GG     G+F++ +  G  A   GLQ GD+I+++N   
Sbjct: 82  SRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYS 141

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR-----DEYEHVVASQRGDSF 146
           +   T EE +  L+  +  + + V++          +  +  Q  D F
Sbjct: 142 ISSCTHEEVIN-LIRTEKTVSIKVRHIGLIPVKSSPDEPLTWQYVDQF 188

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           ++V D I+  NG S+ +  +   + ++R +  TV++KVR   ++P    P  
Sbjct: 128 LQVGDEIVRINGYSISSCTHEEVINLIR-TEKTVSIKVRHIGLIPVKSSPDE 178

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 50/178 (28%)

Query: 157 ANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ------------------ 198
            + L   + E      VLR    T+ + V    +     EP                   
Sbjct: 13  VDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQV 72

Query: 199 ------------TLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGT-- 238
                          V+L +    +  G+ + G       +F+  +          G   
Sbjct: 73  EYDQLTPRRSRKLKEVRLDRL-HPEGLGLSVRGGLEFGCGLFISHLI--------KGGQA 123

Query: 239 --HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTL 294
               L  GD +++IN +     + +E   LI + K  +S+ +R     P        L
Sbjct: 124 DSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKT-VSIKVRHIGLIPVKSSPDEPL 180

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 75.0 bits (185), Expect = 9e-17
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 49  PDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
                +   K    +G  + GG      I+++ V PG  A   G L+ GD++L VN + +
Sbjct: 4   GSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63

Query: 105 KGITREEAVLFLLSLQDQIHLIVQ 128
           +G   E+AV  L + Q  + L+V+
Sbjct: 64  EGEQHEKAVELLKAAQGSVKLVVR 87

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 14/41 (34%), Positives = 27/41 (65%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +K  D+++S NG+S+E  ++  AV++L+ +  +V L VR  
Sbjct: 49  LKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSG 89

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
           +S       V+L K+ +   F I+ G +    I++  V   +    +     L  GD LL
Sbjct: 2   SSGSSGV--VELPKTDEGLGFNIMGGKEQNSPIYISRV---IPGGVADRHGGLKRGDQLL 56

Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
            +N    +G   ++A +L+ +++  + L +R 
Sbjct: 57  SVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 50  DPRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           D   +  +     G RL GG    V + ++ + PG  A+  G+  GD +L ++  +   +
Sbjct: 3   DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSL 62

Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDE 133
           T  EA   + +  +++ L +   R  
Sbjct: 63  THIEAQNKIRACGERLSLGL--SRAI 86

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
           +A GD +L I+      ++  EA+  I +  E+LSL + R +  
Sbjct: 45  VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAITS 88

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           A+Q G    + V D ++S +G +  ++ +  A   +R  G  ++L + R I
Sbjct: 40  AAQAG----VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAI 86

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 20/99 (20%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 47  VEPDPRFITFQKE-GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
           +  +   I  +K+   +G+ L G    +++ IFV  + P  PA+  G ++ GD++L++N+
Sbjct: 22  LPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINN 81

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
             + G + + A   + +   ++ L+     D    + + 
Sbjct: 82  QILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASG 120

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +++ D ++  N   L    +  A  +++ + S V L   R 
Sbjct: 70  MRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRN 110

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 184 KVRRRIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASP 236
           K+R+R    A    +   ++L K +     G+ + GNK      IFV  +        + 
Sbjct: 14  KIRQR---YADLPGELHIIELEKDKNG--LGLSLAGNKDRSRMSIFVVGI---NPEGPAA 65

Query: 237 GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
              ++  GD LL+INN    G S + A  +I ++  K+ L   R     
Sbjct: 66  ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAV 114

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 46  FVEPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
           + +  PR I F   EG +G  L G     + V  + P   AS+ G + GD I+ +  +D 
Sbjct: 19  YFQSMPRSIRFTAEEGDLGFTLRGNA--PVQVHFLDPYCSASVAGAREGDYIVSIQLVDC 76

Query: 105 KGITREEAVLFLLSL-QDQIHLIVQNRRDE 133
           K +T  E +  L S  +D+I + V +  DE
Sbjct: 77  KWLTLSEVMKLLKSFGEDEIEMKVVSLLDE 106

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 54  ITFQKEG-SVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
           +T  KEG + G  + GG          + +T+V+PG PA  +G ++PGD++L V+ + + 
Sbjct: 7   VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLL 66

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138
           G T  EA+  L     +  L++    D  E  V
Sbjct: 67  GTTHAEAMSILKQCGQEAALLI--EYDVSETAV 97

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           IK  DR++S +G+ L    +  A+ +L+  G    L +   +
Sbjct: 51  IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDV 92

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 198 QTLRVQLSKSRKKDDFGIILGNK--------IFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
           +T+ V L K      F I  G          + +  V        +     +  GD LL 
Sbjct: 3   RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSV---RPGGPADREGTIKPGDRLLS 59

Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
           ++     G +  EA  ++    ++ +L I  +V    
Sbjct: 60  VDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSETA 96

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 14/100 (14%)

Query: 43  SIFFVEPDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG 89
           +++F    PR +   +E   S+GI + GG              GIF+  V   SPA   G
Sbjct: 17  NLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNG 76

Query: 90  -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
            L+PGD+I++V+ MD++  + E+AV  +    + +  +VQ
Sbjct: 77  TLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           +K  DRI+  +G+ L +  +  AV+ +R +G+ V   V+  I
Sbjct: 78  LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII 119

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IF+K V   L+++ +     L  GD +++++       S ++A + I  +   +   ++ 
Sbjct: 61  IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117

Query: 281 EVP 283
            + 
Sbjct: 118 IIS 120

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           ++       G RL GG    + + +++++ G  AS   ++ GD +L ++ +  +G+T  E
Sbjct: 9   VSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLE 68

Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           A   + +    +++ +Q R            G S
Sbjct: 69  AQNKIKACTGSLNMTLQ-RASAAAKSEPVSSGPS 101

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
           +  GDV+L I+     GM+  EA+  I +    L++T++R      +   S+ 
Sbjct: 47  VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSSG 99

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 7/52 (13%), Positives = 25/52 (48%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           +++ D ++S +G+S + + +  A   ++    ++ + ++R      S    +
Sbjct: 47  VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSS 98

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           +        G R++GG      I VT V     A    L+PGD I+ +N    + +   E
Sbjct: 10  VDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAE 69

Query: 112 AVLFLLSLQDQIHLIVQ 128
           A   +      + L + 
Sbjct: 70  AQSKIRQSASPLRLQLD 86

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
            L  GD+++ IN    + M   EA+  I  S   L L + R 
Sbjct: 47  DLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRS 88

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  D I++ NG S EN+ +  A   +R S S + L++ R 
Sbjct: 48  LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRS 88

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 49  PDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG-LQPGD 94
             PR +   +E   S+GI + GG              GIF+  V   SPA     L+ GD
Sbjct: 14  GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73

Query: 95  KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           KIL+V+ +D++  +  EAV  + +  + +  IVQ+   
Sbjct: 74  KILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
           +K  D+I+  +G+ L+N  +  AV+ ++++G+ V   V+     P
Sbjct: 69  LKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSSTP 113

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IF+K+V   L+++ +  T+ L  GD +L+++       S  EA + I ++   +   ++ 
Sbjct: 52  IFIKQV---LEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQS 108

Query: 281 EVPRP 285
               P
Sbjct: 109 LSSTP 113

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 14/95 (14%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG-LQPG 93
              PR +   +E   S+GI + GG              GIF+  V   SPA   G L+PG
Sbjct: 2   SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61

Query: 94  DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
           D+I++V+ MD++  + E+AV  +    + +  +VQ
Sbjct: 62  DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
           +K  DRI+  +G+ L +  +  AV+ +R +G+ V   V+  I   
Sbjct: 58  LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR 102

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 21/107 (19%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK--------------IFVKEVTHRLDNNASPGT 238
           S +P+   V+L +       GI I+G +              IF+K V   L+++ +   
Sbjct: 2   SMQPRR--VELWR-EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHV---LEDSPAGKN 55

Query: 239 HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
             L  GD +++++       S ++A + I  +   +   ++  +   
Sbjct: 56  GTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR 102

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 36  PGSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-L 90
            GS    +   V      I   K    +G+ + GG       I +  V     A+  G L
Sbjct: 3   SGSSGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRL 62

Query: 91  QPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
             GD+IL+VN +D++  + EEA+  L     ++ L+V      Y 
Sbjct: 63  WAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYR 107

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           +   D+I+  NG+ L N  +  A+  LR +   V L V R        E 
Sbjct: 62  LWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEES 111

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
              Q + +++SK R      I+ G     N I + EV    +  A+    +L  GD +L+
Sbjct: 14  VPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEV---YEEGAAARDGRLWAGDQILE 70

Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
           +N       S +EA   +  + +K+ L + R+       +   +
Sbjct: 71  VNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPS 114

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 47  VEPDPRFITFQK--EGSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
           +   P  +T QK  +  +GI + GG      +++  V   +PA+L G +  GD+I  VN 
Sbjct: 16  IPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNG 75

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
             +KG T+ E    +  ++ ++ +     + + +
Sbjct: 76  RSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPK 109

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP-------ASPEPQTL 200
           +   D I   NG S++        +++++    VT+   +    P         P  +++
Sbjct: 64  VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPGIESV 123

Query: 201 RV 202
           ++
Sbjct: 124 KI 125

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGD 245
                    +V L K   ++  GI I G       +++ +V    DN  +     +A GD
Sbjct: 13  KLGIPTVPGKVTLQKD-AQNLIGISIGGGAQYCPCLYIVQV---FDNTPAALDGTVAAGD 68

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
            +  +N     G +  E  K+I   K ++++   +    P   +     PG
Sbjct: 69  EITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPG 119

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 32  TAVQPGSPDLFSIFFVEPDPRFITFQKEG-SVGIRLTGG-----NKVGIFVTAVQPGSPA 85
           + V  G+ +L+  F   P  + IT ++    +G  + GG       + I+V  V     A
Sbjct: 9   SGVDLGTENLY--FQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAA 66

Query: 86  SLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           S  G L+ GD+I+ VN   ++G+T EEAV  L   +  + L+V +  +
Sbjct: 67  SEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +K  D+I++ NG SLE V +  AV +L+ +  TVTL V   
Sbjct: 72  LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS 112

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 191 LPASPEPQTLRVQLSKSRKKDDFGII------LGNK-IFVKEVTHRLDNNASPGTHQLAE 243
           L     PQ   + L +      F I+       G+  I+VK V       A+    +L  
Sbjct: 18  LYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTV---FAKGAASEDGRLKR 74

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
           GD ++ +N    +G++ +EA  ++  +K  ++L +     
Sbjct: 75  GDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 46  FVEPDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           F    PR  T +K     G  L    +K G F+ +V P SPA   GL+  D+I++VN + 
Sbjct: 5   FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC 64

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
           M+G    + V  + +  D+  L+V +R  +
Sbjct: 65  MEGKQHGDVVSAIRAGGDETKLLVVDRETD 94

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  DRI+  NG+ +E  ++G  V  +R  G    L V  R
Sbjct: 51  LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 73.4 bits (181), Expect = 3e-16
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
             D   +   K   S+GI +TGG        GI+V AV P   A   G +  GD++L VN
Sbjct: 3   PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
            + ++G T ++AV  L +    +HL+++  + 
Sbjct: 63  GVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           I   DR+++ NG+SLE   +  AV+ LR++G  V L + + 
Sbjct: 52  IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEGDVL 247
                  V+L+K+       +  G         I+VK V   +   A+    ++ +GD +
Sbjct: 2   KPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAV---IPQGAAESDGRIHKGDRV 58

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
           L +N    +G + K+A + + ++ + + L + +    PT
Sbjct: 59  LAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS-PT 96

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 50  DPRFITFQKE-GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
               I   K    +G+ + GG       I +  V     A   G L  GD+IL+VN +D+
Sbjct: 4   CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63

Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
           +  T +EA+  L     ++ L +      Y+
Sbjct: 64  RKATHDEAINVLRQTPQRVRLTLYRDEAPYK 94

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
           +   D+I+  NG+ L    +  A+ VLR +   V L + R      S  
Sbjct: 49  LWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTR 97

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 198 QTLRVQLSKSRKKDDFGIILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
               +++SK R      I+ G+      I + EV    +  A+    +L  GD +L++N 
Sbjct: 4   CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEV---YEEGAACKDGRLWAGDQILEVNG 60

Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
                 +  EA  ++  + +++ LT+ R+  
Sbjct: 61  IDLRKATHDEAINVLRQTPQRVRLTLYRDEA 91

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 43  SIFFVEPDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPG 93
           +++F       I   K    +G  + GG           I+VT +  G  A   G LQ G
Sbjct: 17  NLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVG 76

Query: 94  DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
           D++L VN+  ++ +T EEAV  L +  + ++L V      Y
Sbjct: 77  DRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++V DR++  N  SLE V +  AV +L+++   V LKV + 
Sbjct: 73  LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP 113

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEG 244
                 + ++L K  K   F I  G         N I+V ++   +D  A+    +L  G
Sbjct: 20  FQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IDGGAAQKDGRLQVG 76

Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
           D LL +NN+  + ++ +EA  ++ ++ E + L + +   
Sbjct: 77  DRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 47  VEPDPRFITFQKEG--SVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
                      KE    +G  L GG       I V  V P   AS +G +Q G+++L +N
Sbjct: 12  QLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSIN 71

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
              +KG T  +A+  L   ++    ++  R+
Sbjct: 72  GKSLKGTTHHDALAILRQAREPRQAVIVTRK 102

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           I+  + ++S NG SL+   +  A+ +LR +       +  R + P +   
Sbjct: 61  IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPD 110

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASPGTHQLAEG 244
               +   + V +    +    G  + G        I V  V     N  +     + +G
Sbjct: 8   ATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRV---FPNGLASQEGTIQKG 64

Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
           + +L IN     G +  +A  ++  ++E     I      P A  +  +
Sbjct: 65  NEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNS 113

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 73.6 bits (181), Expect = 4e-16
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG-LQPG 93
            P  R +  QK     +GI + GG              GIF++ V P   A   G L+ G
Sbjct: 7   GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVG 66

Query: 94  DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
            ++L+VN   + G+T  EAV  L S+ D + ++V +  +
Sbjct: 67  LRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE 105

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
            A + G    ++V  R++  N  SL  + +G AVQ+LR  G T+T+ V       + P 
Sbjct: 56  AAGRDG---RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGF--ESGPS 109

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------------IFVKEVTHRLDNNASP 236
             S  P    + + K+  +   GI I G                IF+ +V       A+ 
Sbjct: 3   SGSSGPGLRELCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKV---SPTGAAG 58

Query: 237 GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
              +L  G  LL++N     G++  EA +L+ S  + L++ +       
Sbjct: 59  RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESG 107

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 36  PGSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASL 87
            GS  +            I   +    +G  + GG       N  GI+V+ ++    A+L
Sbjct: 3   SGSSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAAL 62

Query: 88  QG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
            G LQ GDKIL VN  D+K +  ++AV    +    + L VQ+R       ++ 
Sbjct: 63  DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 16/48 (33%), Positives = 31/48 (64%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASP 195
           ++  D+I+S NG  L+N+ +  AV + R++G  V+L+V+ R+ +   P
Sbjct: 66  LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGP 113

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK---------IFVKEVTHRLDNNASPGTHQLAE 243
                    + L++      F I+ G           I+V  +    +N A+    +L E
Sbjct: 12  VDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRI---KENGAAALDGRLQE 68

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
           GD +L +N      +  ++A  L  ++   +SL ++  +     
Sbjct: 69  GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNG 112

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILK 98
                 I   +    +G  + GG       N  GI+V+ ++    A+L G LQ GDKIL 
Sbjct: 5   LVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILS 64

Query: 99  VNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           VN  D+K +  ++AV    +    + L VQ+R +
Sbjct: 65  VNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 15/41 (36%), Positives = 28/41 (68%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  D+I+S NG  L+N+ +  AV + R++G  V+L+V+ R
Sbjct: 56  LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 96

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           I+V  +    +N A+    +L EGD +L +N      +  ++A  L  ++   +SL ++ 
Sbjct: 39  IYVSRI---KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95

Query: 281 EVP 283
            + 
Sbjct: 96  RLE 98

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 49  PDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
                I   K    +G  + GG           I+VT +  G  A   G LQ GDK+L V
Sbjct: 2   EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61

Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFH 147
           N + ++ +T EEAV  L +  D ++L V      Y     S+     H
Sbjct: 62  NSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY----ISRHHHHHH 105

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
           +++ D++++ N +SLE V +  AV  L+++   V LKV +   +  S  
Sbjct: 52  LQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISRH 100

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 197 PQTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVL 247
            + + ++L K  K   F I  G         N I+V ++   ++  A+    +L  GD L
Sbjct: 2   EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGKLQIGDKL 58

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQES 291
           L +N+   + ++ +EA   + ++ + + L + +      +    
Sbjct: 59  LAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISRHHH 102

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 71.9 bits (177), Expect = 8e-16
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 49  PDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           P  R +   +     G  L+G       ++ V  GSPA   GL+ GD+IL VN++++K  
Sbjct: 1   PRVRSVEVARGRAGYGFTLSGQA--PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKA 58

Query: 108 TREEAVLFLLSLQDQIHLIVQ 128
           + E+ V  +      +H+++ 
Sbjct: 59  SHEDVVKLIGKCSGVLHMVIA 79

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 4/40 (10%), Positives = 20/40 (50%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           ++  D+I++ N ++++   +   V+++      + + +  
Sbjct: 41  LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 195 PEPQTLRVQLSKSRKKDDFGI-ILGNK-IFVKEVTHRLDNNASP----GTHQLAEGDVLL 248
           P  +++ V     R +  +G  + G     +  V        SP    G   L  GD +L
Sbjct: 1   PRVRSVEVA----RGRAGYGFTLSGQAPCVLSCVMRG-----SPADFVG---LRAGDQIL 48

Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV 282
            +N       S ++  KLI      L + I   V
Sbjct: 49  AVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGV 82

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 72.9 bits (179), Expect = 9e-16
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
              P  +   K    ++GI LT     NK  I +  ++P S     G L PGD IL ++ 
Sbjct: 13  ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDG 72

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
             M+  +  EA   L S+ +++ L +         +  S    S
Sbjct: 73  TSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPSS 116

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           +   D I+S +G S+E+     A ++L      V L++           P +
Sbjct: 61  LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSS 112

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 11/110 (10%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASPGTHQLAEGD 245
            +     L V++ K+      GI +          I +  +      +    +  L  GD
Sbjct: 10  VANASGPLMVEIVKTPG-SALGISLTTTSLRNKSVITIDRIKP---ASVVDRSGALHPGD 65

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLP 295
            +L I+    +  S+ EA KL+ S  EK+ L I          + S+   
Sbjct: 66  HILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPS 115

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
             D   +  ++     G  L GG    + ++V  +    PA   G ++ GD+IL++N   
Sbjct: 22  SMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGET 81

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRD 132
            K +    A+  + +   ++ L ++    
Sbjct: 82  TKNMKHSRAIELIKNGGRRVRLFLKRGET 110

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 10/41 (24%), Positives = 27/41 (65%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +++ D I+  NG + +N+++  A++++++ G  V L ++R 
Sbjct: 68  MRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG 108

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
                   V+L +  K   FG  + G +     ++V  +    ++  +  + ++  GD +
Sbjct: 20  FQSMDFYTVELERGAKG--FGFSLRGGREYNMDLYVLRLA---EDGPAERSGKMRIGDEI 74

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
           L+IN   T  M    A +LI +   ++ L ++R    
Sbjct: 75  LEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETS 111

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 14/99 (14%)

Query: 42  FSIFFVEPDPRFITFQK-EGSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQP 92
           FS++ VE     +  +K   S+GI ++G           GI+V ++ PGS A+L G ++P
Sbjct: 11  FSLYSVE-----LFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEP 65

Query: 93  GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
            DKIL+V+D++++G+ + + V  L +  + + L++  R 
Sbjct: 66  NDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 13/42 (30%), Positives = 28/42 (66%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           I+ ND+I+  + ++++ +     V+VLR++G+ V L + RR+
Sbjct: 63  IEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK----------IFVKEVTHRLDNNASPGTHQLA 242
           +       V+L + +     GI I G +          I+VK +   +  +A+    ++ 
Sbjct: 8   ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSL---IPGSAAALDGRIE 64

Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
             D +L++++    GM+  +  +++ ++   + L + R +P
Sbjct: 65  PNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLP 105

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 45  FFVEPDPRFITFQKEGSV--GIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
             +EP+   +   K      G  +    +K  + ++ +  G  A   G +Q GD IL VN
Sbjct: 3   HMIEPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 62

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
           D  +  ++ + A+  L  +  + H+++  R  E
Sbjct: 63  DRPLVDLSYDSALEVLRGIASETHVVLILRGPE 95

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           I+  D I++ N   L ++ Y +A++VLR   S   + +  R     +   +T
Sbjct: 52  IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLET 103

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 16/131 (12%)

Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
           EP  + V+L K RK    G  +        + + ++   +   A+  +  +  GD++L +
Sbjct: 6   EPNVISVRLFK-RKVGGLGFLVKERVSKPPVIISDL---IRGGAAEQSGLIQAGDIILAV 61

Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYS 310
           N+ P   +S   A +++     +  + +    P        TT  G        ++    
Sbjct: 62  NDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLG 121

Query: 311 SQNLYVQPPTR 321
                  PPT+
Sbjct: 122 -------PPTK 125

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 46  FVEPDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           F    PR  T +K     G  L    +K G F+ +V P SPA   GL+  D+I++VN + 
Sbjct: 5   FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC 64

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
           M+G    + V  + +  D+  L+V +R  + 
Sbjct: 65  MEGKQHGDVVSAIRAGGDETKLLVVDRETDE 95

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  DRI+  NG+ +E  ++G  V  +R  G    L V  R
Sbjct: 51  LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 48  EPDPRFITFQKEG--SVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
               R +   KE    +GI +TGG  + V I ++ + PG PA   G L  GD IL VN +
Sbjct: 25  FQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV 84

Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQ 128
           +++    +EAV  L   + +I   V 
Sbjct: 85  NLRDTKHKEAVTILSQQRGEIEFEVV 110

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
            A + G    + V D I++ NG++L + ++  AV +L      +  +V 
Sbjct: 65  PADRCG---GLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
           +   Q +R  L      +  GI I G K     I + E+        +     L  GD +
Sbjct: 22  NLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEI---HPGQPADRCGGLHVGDAI 78

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIR 279
           L +N         KEA  ++   + ++   + 
Sbjct: 79  LAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
           + D   +  +K     G  + GG   K+ ++V  +    PA   G ++ GD+I+++N   
Sbjct: 9   DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGES 68

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQ 128
            + +T   A+  + S   ++ L+++
Sbjct: 69  TRDMTHARAIELIKSGGRRVRLLLK 93

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI-VLPAS 194
           ++V D+I+  NG S  ++ +  A+++++  G  V L ++R     P+S
Sbjct: 55  MRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPSS 102

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
           +  +     V + K  K   F I  G +    ++V  +    ++  +    ++  GD ++
Sbjct: 6   SGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLA---EDGPAIRNGRMRVGDQII 62

Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY 288
           +IN   T  M+   A +LI S   ++ L ++R      + 
Sbjct: 63  EINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPSS 102

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 72.2 bits (177), Expect = 2e-15
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 47  VEPDPRFITFQKE--GSVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
           V  +   +    +     GI+L G             ++ ++  SPA   G LQ GD+++
Sbjct: 12  VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 71

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
            +N +  +  T EEA   L        + ++   D  E V+ S
Sbjct: 72  AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPS 114

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           +++ DR+M+ NG+  E+  +  A Q+LRDS  T  + +     +  S  P
Sbjct: 64  LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIP 113

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK---------IFVKEVTHRLDNNASPGTHQLAE 243
               +T  V L+       FGI + G+            +  +     ++ +     L  
Sbjct: 11  VVHTETTEVVLTA-DPVTGFGIQLQGSVFATETLSSPPLISYI---EADSPAERCGVLQI 66

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQEST 292
           GD ++ IN  PT+  + +EA +L+  S     +T+  E     +   S+
Sbjct: 67  GDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSS 115

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 54  ITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
           I  ++    +G  + GG       +  GIF+T + PG  A++ G L   D +L+VN++D+
Sbjct: 8   IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67

Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
             +    AV  L      + L+V+ R+   E
Sbjct: 68  SEVVHSRAVEALKEAGPVVRLVVRRRQPPPE 98

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTL 200
           + VND ++  N + +  V +  AV+ L+++G  V L VRRR      PE  ++
Sbjct: 53  LGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR---QPPPEETSV 102

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IF+ ++   +   A+    +L   D +L++N      +    A + +  +   + L +RR
Sbjct: 36  IFITKI---IPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRR 92

Query: 281 EVPRPTAYQ 289
             P P    
Sbjct: 93  RQPPPEETS 101

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 54  ITFQKEGSVGIRLT-GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
           +   K+    + L+   N++G  +  +  G    +   LQ GD I K N   ++G+  + 
Sbjct: 12  VDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 71

Query: 112 AVLFLLSLQDQIHLIV 127
           +         ++ + V
Sbjct: 72  SYALFKGANGKVSMEV 87

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           ++  D I   NG +LE + +  +  + + +   V+++V R     AS
Sbjct: 50  LQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHP 254
           +   V L K +   + G+ +  N+    + ++             +L  GD++ K N   
Sbjct: 8   EKFNVDLMK-KAGKELGLSLSPNEIGCTIADLIQ---GQYPEIDSKLQRGDIITKFNGDA 63

Query: 255 TDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY 288
            +G+  + +  L   +  K+S+ + R  P+P A 
Sbjct: 64  LEGLPFQVSYALFKGANGKVSMEVTR--PKPAAA 95

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
                 +   +     G+ L GG        + V  +    PA   G L+ GD +L +N 
Sbjct: 9   ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING 68

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
              +G+T  +AV  + +   Q+HL+++   
Sbjct: 69  ESTQGLTHAQAVERIRAGGPQLHLVIRRPL 98

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           ++V D ++  NG S + + +  AV+ +R  G  + L +RR +  P+S
Sbjct: 57  LEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-------IFVKEVTHRLDNNASPGTHQLAE 243
            +        V+L +      FG+ + G +       + V+ +   L +  +    +L  
Sbjct: 5   SSGQASGHFSVELVRGYAG--FGLTLGGGRDVAGDTPLAVRGL---LKDGPAQRCGRLEV 59

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
           GD++L IN   T G++  +A + I +   +L L IRR +  P++
Sbjct: 60  GDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 51  PRFITFQKE--GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           PR     K+   + G  L    +  G  +  ++ GSPA   GL  GD++L++N + +   
Sbjct: 2   PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61

Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQR 142
              + V  +    + + L+V    D YE  V +Q 
Sbjct: 62  EHAQVVELVRKSGNSVTLLVL-DGDSYEKAVKNQV 95

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   DR++  NG+ ++  E+   V+++R SG++VTL V   
Sbjct: 44  LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 52  RFITFQKEG--SVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
             +T  K G  S GI +  G           GIF+  + P SPA L G L+ GD+IL +N
Sbjct: 7   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
             D++  T +  +  +     +I L +Q   D+
Sbjct: 67  GKDVRNSTEQAVIDLIKEADFKIELEIQ-TFDK 98

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           +KV DRI+S NG  + N      + +++++   + L+++ 
Sbjct: 56  LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
             +PR     K+   + G  L    +  G  +  ++ GSPA   GL  GD++L++N + +
Sbjct: 11  TFNPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV 70

Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQR 142
                 + V  +    + + L+V    D YE  V +Q 
Sbjct: 71  DKEEHAQVVELVRKSGNSVTLLVL-DGDSYEKAVKNQV 107

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   DR++  NG+ ++  E+   V+++R SG++VTL V   
Sbjct: 56  LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 51  PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           P+     K E   G  L       G F+  VQ G PA L GL+  D I++VN +++    
Sbjct: 4   PKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEP 63

Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
            E+ V  + S    + L+V  ++ +
Sbjct: 64  YEKVVDRIQSSGKNVTLLVCGKKAQ 88

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
           ++  D I+  NG+++ +  Y   V  ++ SG  VTL V
Sbjct: 45  LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 54  ITFQKEGSVGIRLT-GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
           +   K+    + L+   N++G  +  +  G    +   LQ GD I K N   ++G+  + 
Sbjct: 6   VDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 65

Query: 112 AVLFLLSLQDQIHLIVQNRR 131
                     ++ + V   +
Sbjct: 66  CYALFKGANGKVSMEVTRPK 85

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSK 206
           ++  D I   NG +LE + +     + + +   V+++V R    P S    +L  +L +
Sbjct: 44  LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRP--KPGSGGSGSLVPRLLR 100

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHP 254
           +   V L K   K+  G+ +  N+    + ++   +         +L  GD++ K N   
Sbjct: 2   EKFNVDLMKKAGKE-LGLSLSPNEIGCTIADL---IQGQYPEIDSKLQRGDIITKFNGDA 57

Query: 255 TDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLP 295
            +G+  +    L   +  K+S+ + R  P+P +    + +P
Sbjct: 58  LEGLPFQVCYALFKGANGKVSMEVTR--PKPGSGGSGSLVP 96

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 48  EPDPRFITFQKEG-SVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
             +   +  +K+   +GI + G          K+GIFV  V  G  A   G +Q  D ++
Sbjct: 2   HMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 61

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           +V+   + G+T+  A   L + + ++  ++   R   +  VA     +
Sbjct: 62  EVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQT 109

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSK 206
           I+VND ++  +G SL  V    A  VLR++   V   + R      S   Q ++  L +
Sbjct: 54  IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLEQ 112

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 17/109 (15%)

Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTHQLAE 243
             +   V+L K  +    GI I+G             IFVK V    +  A+    ++  
Sbjct: 2   HMELFPVELEKDSEG--LGISIIGMGAGADMGLEKLGIFVKTV---TEGGAAHRDGRIQV 56

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQEST 292
            D+L++++     G++   A  ++ ++K ++   I RE P   +     
Sbjct: 57  NDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQL 105

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 71.0 bits (174), Expect = 4e-15
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 57  QKEGSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGIT 108
                +GIR+ GG        ++G ++  + PG  A   G L  G ++L+ N + +   T
Sbjct: 27  VSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKT 86

Query: 109 REEAVLFLLSLQDQIHLIVQNRRD 132
            EE    +     +  + V+   +
Sbjct: 87  YEEVQSIISQQSGEAEICVRLDLN 110

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 6/47 (12%), Positives = 17/47 (36%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPA 193
            +    +++  NG+ L +  Y     ++        + VR  + +  
Sbjct: 67  KLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMSG 113

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 195 PEPQTLRVQLSKSRKKDDFGI-ILGNK----------IFVKEVTHRLDNNASPGTHQLAE 243
              +  R     +   +  GI I+G K           ++ ++   L   ++  T +L E
Sbjct: 14  ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKI---LPGGSAEQTGKLME 70

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
           G  +L+ N  P    + +E + +I     +  + +R ++    
Sbjct: 71  GMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMSG 113

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 70.5 bits (173), Expect = 5e-15
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 50  DPRFITFQKE--GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKILKV 99
           +   +T  +      GI ++GG         +  I ++ V  G PA    LQ  D++  V
Sbjct: 7   EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMV 65

Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           N + M  +    AV  L        + ++ ++ 
Sbjct: 66  NGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG 98

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
            ++ NDR+   NG+S++NVE+  AVQ LR SG    + +RR+          
Sbjct: 55  QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTTY 106

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           I + +V   L    + G  QL E D +  +N    D +    A + +  S +   +TIRR
Sbjct: 41  IVISDV---LKGGPAEG--QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95

Query: 281 EVPRP 285
           +    
Sbjct: 96  KKGGG 100

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 54  ITFQKE-GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           +  ++    +G+ L  G        G+++  + PGSPA+  G L  GD+IL+VN   + G
Sbjct: 12  VELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLG 71

Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
           +    AV  +     ++  +V     E    + S
Sbjct: 72  LGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHS 105

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           + + DRI+  NG SL  + Y  AV ++R  G  +   V +  V  A      
Sbjct: 55  LSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSG 106

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEG 244
            +        V+L +       G+I G         ++++ +   L  + +    +L+ G
Sbjct: 2   SSGSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTL---LPGSPAAADGRLSLG 58

Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
           D +L++N     G+    A  LI    +K+   + +          S  
Sbjct: 59  DRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGP 107

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 69.6 bits (171), Expect = 5e-15
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 49  PDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
                +   K    +G  + GG           I++T +  G  A   G LQ GD++L V
Sbjct: 2   MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61

Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
           N+ +++ +  EEAV  L +  D ++L V 
Sbjct: 62  NNTNLQDVRHEEAVASLKNTSDMVYLKVA 90

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +++ DR+++ N  +L++V +  AV  L+++   V LKV + 
Sbjct: 52  LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP 92

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 197 PQTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVL 247
              + V L K  K   F I  G         N I++ ++   ++  A+    +L  GD L
Sbjct: 2   MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKI---IEGGAAQKDGRLQIGDRL 58

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           L +NN     +  +EA   + ++ + + L + +
Sbjct: 59  LAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 51  PRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
            R IT  + +   G  +   +   + V AV  G PA   GLQ  D +L++N+  ++    
Sbjct: 4   YRQITIPRGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKC 61

Query: 110 EEAVLFLLSLQDQIHLIVQ 128
            E    + S   +I L+V 
Sbjct: 62  VELAHEIRSCPSEIILLVW 80

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 18/98 (18%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL--GNKIFVKEVTHRLDNNASP----GTHQLAEGDVL 247
           S   + + +     R KD FG  +   + + V+ V         P    G   L + D +
Sbjct: 1   SMRYRQITIP----RGKDGFGFTICCDSPVRVQAVDSG-----GPAERAG---LQQLDTV 48

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
           L++N  P +     E    I S   ++ L + R VP+ 
Sbjct: 49  LQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQV 86

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           ++  D ++  N   +E+ +       +R   S + L V R        +P
Sbjct: 42  LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM---VPQVKP 88

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 70.1 bits (172), Expect = 6e-15
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
                     +    +G  + GG           GIFV+ +  G  A   G LQ GD++L
Sbjct: 5   SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVL 64

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
            +N +D+     + AV  L +    I L+++
Sbjct: 65  SINGVDVTEARHDHAVSLLTAASPTIALLLE 95

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
           ++V DR++S NG+ +    +  AV +L  +  T+ L + R     + P 
Sbjct: 57  LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREA--GSGPS 103

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IFV  +    +  A+     L  GD +L IN           A  L+ ++   ++L + R
Sbjct: 40  IFVSRI---AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96

Query: 281 EVPRPTAY 288
           E     + 
Sbjct: 97  EAGSGPSS 104

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 45/236 (19%)

Query: 414 RNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLK 473
             S RR +   +     V   +++    +YE V      + RPV++ GP+ D   D L+ 
Sbjct: 63  VPSKRRWERKMRARDRSVKSEENV---LSYEAVQRLSINYTRPVIILGPLKDRINDDLIS 119

Query: 474 DFPDKFS--------APRK-------FNFILW-----ATIKDTAMYQSSKEPGMYQG--- 510
           ++PDKF           R+       ++F+         I++    ++ +      G   
Sbjct: 120 EYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSV 179

Query: 511 ---KDSMYQGK----DSMYQGKESMYQGKDSMYQGK------DSMYQGKDSMYQGKDIKK 557
              ++   +GK    D      + +   + +            S+    +     + + +
Sbjct: 180 ASVREVAEKGKHCILDVSGNAIKRL---QVAQLYPVAVFIKPKSVDSVMEMN---RRMTE 233

Query: 558 EVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKS 613
           E   K +E++ K+E+ +   FTG +    ++  Y K + +I  Q    +W+   +S
Sbjct: 234 EQAKKTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKES 289

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 69.7 bits (171), Expect = 8e-15
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 48  EPDPRFITFQKEGS------VGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDK 95
             D   +   K  +        +   GG        GI+V AV P   A   G +  GD+
Sbjct: 7   PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDR 66

Query: 96  ILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
           +L VN + ++G T ++AV  L +    +HL+++  +    
Sbjct: 67  VLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTS 106

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
           I   DR+++ NG+SLE   +  AV+ LR++G  V L + +    P S E
Sbjct: 61  IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG-QSPTSKE 108

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIILGNK------------IFVKEVTHRLDNNASPGTHQLA 242
                  V+L+K+       + +               I+VK V   +   A+    ++ 
Sbjct: 6   KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAV---IPQGAAESDGRIH 62

Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
           +GD +L +N    +G + K+A + + ++ + + L + +     
Sbjct: 63  KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPT 105

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 69.4 bits (170), Expect = 8e-15
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 54  ITFQKEGSVGIRLTGG----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           +  +K+  +G  ++GG          +  GIFVT VQP  PAS + LQPGDKI++ N   
Sbjct: 15  VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYS 73

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQ 128
              I   +AV  L + Q+ + LI+ 
Sbjct: 74  FINIEHGQAVSLLKTFQNTVELIIV 98

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           ++  D+I+ ANG S  N+E+G AV +L+   +TV L + R +
Sbjct: 60  LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IFV  V         P +  L  GD +++ N +    +   +A  L+ + +  + L I R
Sbjct: 45  IFVTRVQ-----PEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99

Query: 281 EVP 283
           EV 
Sbjct: 100 EVS 102

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 70.8 bits (173), Expect = 8e-15
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 19/112 (16%)

Query: 48  EPDPRFITFQKE-----GSVGIRLTGG--------------NKVGIFVTAVQPGSPASLQ 88
           +   + +   K        +G  + GG                 GI+VT V  G PA + 
Sbjct: 21  QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA 80

Query: 89  GLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
           GLQ GDKI++VN  DM  +T ++A   L    +++  ++  R+   + V  S
Sbjct: 81  GLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQS 132

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVL-RDSGSTVTLKVRRRIVLPASPE 196
           +++ D+IM  NG  +  V +  A + L + S   V L V R+ +  A  +
Sbjct: 82  LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQ 131

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 51  PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PR +  +K     G  L  G  + G  +  ++PGSPA   GL+  D ++ VN   ++ + 
Sbjct: 6   PRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 65

Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
            +  V  +    DQ  L+V ++  E
Sbjct: 66  HDGVVEMIRKGGDQTTLLVLDKELE 90

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 149 KVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           K ND +++ NG S+E +++   V+++R  G   TL V  +
Sbjct: 48  KNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDK 87

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 51  PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
           PR    +K     G  L    ++ G ++ +V PGSPA+  GL+  D++++VN  +++G+ 
Sbjct: 5   PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLR 64

Query: 109 REEAVLFLLSLQDQIHLIV 127
             E V  + + +D+  L+V
Sbjct: 65  HAEVVASIKAREDEARLLV 83

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  DR++  NG ++E + +   V  ++       L V   
Sbjct: 46  LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 86

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 54  ITFQKE-GSVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
           +   K    +GI + G          GIFV ++   S     G +Q GD+I+ V+  +++
Sbjct: 8   VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRD 132
           G T ++AV  L      + L +  R +
Sbjct: 68  GFTNQQAVEVLRHTGQTVLLTLMRRGE 94

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           I++ D+I++ +G +L+      AV+VLR +G TV L + RR
Sbjct: 52  IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 92

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 198 QTLRVQLSKSRKKDDFGIILGNK--------IFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
           +T  V+L+K+ +     I             IFVK +     ++A     ++  GD ++ 
Sbjct: 4   ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSI---TKSSAVEHDGRIQIGDQIIA 60

Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
           ++     G + ++A +++  + + + LT+ R   
Sbjct: 61  VDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 94

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 12/117 (10%)

Query: 36  PGSPDLFSIFFVEPDPR---FITFQKE--GSVGIRLTGG-----NKVGIFVTAVQPGSPA 85
            G+ D  S+       R   +I  ++   G +G  +         KV IFV  VQPGS A
Sbjct: 8   LGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVA 67

Query: 86  SLQG-LQPGDKILKVNDMDM-KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
                L+  D+IL +N   + + I+ ++A+  L      + LIV       +   + 
Sbjct: 68  DRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSG 124

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 148 IKVNDRIMSANGLSL-ENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           +K ND+I++ N   L +N+ +  A+ +L+ +  ++ L V R  V   S     
Sbjct: 73  LKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGP 125

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 188 RIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGT 238
            ++   +   Q   + + +       G  ++  +        IFVK+V      + +   
Sbjct: 15  SVIQQMAQGRQIEYIDIERP-STGGLGFSVVALRSQNLGKVDIFVKDV---QPGSVADRD 70

Query: 239 HQLAEGDVLLKINNHP-TDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
            +L E D +L IN+ P    +S ++A  L+  +   L L + RE     
Sbjct: 71  QRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTK 119

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 54  ITFQKEGSVGIRLTGG----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           +  +K+  +G  ++GG          +  GIFVT VQP  PAS + LQPGDKI++ N   
Sbjct: 7   VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYS 65

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQ 128
              I   +AV  L + Q+ + LI+ 
Sbjct: 66  FINIEHGQAVSLLKTFQNTVELIIV 90

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           ++  D+I+ ANG S  N+E+G AV +L+   +TV L + R +
Sbjct: 52  LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 93

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IFV  V         P +  L  GD +++ N +    +   +A  L+ + +  + L I R
Sbjct: 37  IFVTRVQ-----PEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91

Query: 281 EVP 283
           EV 
Sbjct: 92  EVS 94

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 47  VEPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
              +   IT ++ +   G  +   +   + V AV  G PA   GLQ  D +L++N+  ++
Sbjct: 12  ENGEKLQITIRRGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE 69

Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
                E    + S   +I L+V 
Sbjct: 70  HWKCVELAHEIRSCPSEIILLVW 92

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  D ++  N   +E+ +       +R   S + L V R 
Sbjct: 54  LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRV 94

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFG-IILGNK-IFVKEVTHRLDNNASPGTHQ-LAEGDVLL 248
              PE      Q++  R KD FG  I  +  + V+ V         P     L + D +L
Sbjct: 8   EGDPENGEKL-QITIRRGKDGFGFTICCDSPVRVQAVDSG-----GPAERAGLQQLDTVL 61

Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
           ++N  P +     E    I S   ++ L + R     + 
Sbjct: 62  QLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGPSSG 100

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 50  DPRFITFQKEGSV--GIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
           +   +   K      G  +    +K  + ++ +  G  A   G +Q GD IL VND  + 
Sbjct: 1   NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 60

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDE 133
            ++ + A+  L  +  + H+++  R  E
Sbjct: 61  DLSYDSALEVLRGIASETHVVLILRGPE 88

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
            A Q G    I+  D I++ N   L ++ Y +A++VLR   S   + +  R     +   
Sbjct: 38  AAEQSG---LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHL 94

Query: 198 QT 199
           +T
Sbjct: 95  ET 96

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
                     K   G +G  + G       ++GIFV  +Q GS A   G L+  D+IL +
Sbjct: 18  GRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAI 77

Query: 100 NDMDM-KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138
           N   + + IT ++A+  L   +D + L++        + V
Sbjct: 78  NGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYKV 117

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 148 IKVNDRIMSANGLSL-ENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRV 202
           +K  D+I++ NG +L + + +  A+ +L+ +  TV L + R         PQ  +V
Sbjct: 68  LKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG------SLPQYYKV 117

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 15/112 (13%)

Query: 188 RIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGT 238
           +++   +        +L K       G  ++G +        IFV+E+    + + +   
Sbjct: 10  QLIKNMAQGRHVEVFELLK-PPSGGLGFSVVGLRSENRGELGIFVQEI---QEGSVAHRD 65

Query: 239 HQLAEGDVLLKINNHP-TDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQ 289
            +L E D +L IN       ++ ++A  ++  +K+ + L I R    P  Y+
Sbjct: 66  GRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG-SLPQYYK 116

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 2/145 (1%)

Query: 46  FVEPDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           F    PR  T +K     G  L    +K G F+ +V P SPA   GL+  D+I++VN + 
Sbjct: 5   FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC 64

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLE 163
           M+G    + V  + +  D+  L+V +R  +             H+     +   NG   +
Sbjct: 65  MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQK 124

Query: 164 NVEYGTAVQVLRDSGSTVTLKVRRR 188
                   +   +S     ++    
Sbjct: 125 ENSREALAEAALESPRPALVRSASS 149

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 49  PDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
              R +  +K     G  L  G  + G  +  ++PGSPA   GL+  D ++ VN   ++ 
Sbjct: 5   SSGRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEA 64

Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDE 133
           +  +  V  +    DQ  L+V ++  E
Sbjct: 65  LDHDGVVEMIRKGGDQTTLLVLDKEAE 91

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
           +K ND +++ NG S+E +++   V+++R  G   TL V
Sbjct: 48  LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 85

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 69.1 bits (169), Expect = 3e-14
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 47  VEPDPRFITFQKEGSV--GIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILK 98
           +    +  +  ++     G+++ GG      ++  F+T V+ GS A   G L+PGD++L+
Sbjct: 33  LNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLE 92

Query: 99  VNDMDMKGITREEAVLFLLSLQD--QIHLIVQNRR 131
            N   ++G T EE    +L  +   Q+ L+V    
Sbjct: 93  WNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRRIVLPA 193
           H++  D ++  NG  L+   +     ++ +S     V L V R      
Sbjct: 83  HLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPSSG 131

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 19/110 (17%)

Query: 187 RRIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPG 237
            RI+L    +  ++             G+ ++G K         F+ +V      + +  
Sbjct: 29  GRILLNKRLKDGSV-----PRDSGAMLGLKVVGGKMTESGRLCAFITKV---KKGSLADT 80

Query: 238 THQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREVPRP 285
              L  GD +L+ N     G + +E   +I  SK   ++ L + R  P  
Sbjct: 81  VGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPSS 130

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 69.1 bits (169), Expect = 3e-14
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
           E     +T +K    +G  L GG         + +  +  G+ +     +QPGD+IL++ 
Sbjct: 27  EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86

Query: 101 DMDMKGITREEAVLFLLSLQD-QIHLIVQNRRDEYEHVVASQRGDS 145
              M+G+TR EA   + +L D  + +++  RR   +    +  GDS
Sbjct: 87  GTAMQGLTRFEAWNIIKALPDGPVTIVI--RRKSLQSKETTAAGDS 130

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-TVTLKVRRRIVLPASPEP 197
           ++  D I+   G +++ +    A  +++      VT+ +RR+ +       
Sbjct: 76  VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTA 126

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 172 QVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNK-------IFVK 224
            +   + S  +      + + ++ E     V L K      F +  G         + + 
Sbjct: 3   DLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTIN 62

Query: 225 EVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRREVP 283
            +       AS  +  +  GD +L++      G++  EA  +I +  +  +++ IRR+  
Sbjct: 63  RI---FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119

Query: 284 RPTAYQEST 292
           +      + 
Sbjct: 120 QSKETTAAG 128

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 47  VEPDPRFITFQKEGSV--GIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKI 96
           V  +   +T QK+     GI ++GG         +  I ++ V PG PA    LQ  D++
Sbjct: 11  VIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRV 69

Query: 97  LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
           + VN   M+ +    AV  L        ++V+  R   
Sbjct: 70  VMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQ 107

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASP 195
           ++ NDR++  NG  +E+V +  AVQ LR SG    + V+R   +  +P
Sbjct: 63  LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAP 110

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 18/108 (16%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTH 239
                 +   V L K  K+  FGI + G +           I + +V   L    + G  
Sbjct: 8   MEEVIWEQYTVTLQKDSKRG-FGIAVSGGRDNPHFENGETSIVISDV---LPGGPADG-- 61

Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
            L E D ++ +N  P + +    A + +  S +  ++ ++R      A
Sbjct: 62  LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVA 109

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 51  PRFITFQK-EGSVGIRLTGG----NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           PR +  +K     G  L        + G F+  V PG PA   G+Q GD+++ V    ++
Sbjct: 4   PRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVE 63

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138
           G+  EE V  +      + L V +   + E  V
Sbjct: 64  GLGHEETVSRIQGQGSCVSLTVVDPEADRETSV 96

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  DR+++  G S+E + +   V  ++  GS V+L V   
Sbjct: 48  MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDP 88

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
                 +  ++  G +GI ++G       I ++++  G  A   G +  GD+IL +N   
Sbjct: 3   GAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSS 62

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           +KG    EA+  L    + + L ++ + D
Sbjct: 63  LKGKPLSEAIHLLQMAGETVTLKIKKQTD 91

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
           I + DRI++ N  SL+      A+ +L+ +G TVTLK++++    A P 
Sbjct: 49  IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT--DAQPA 95

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
           S       V+L +       GI I G +     I +  +T       +  T  +  GD +
Sbjct: 1   SSGAIIYTVELKRYGGP--LGITISGTEEPFDPIIISSLTK---GGLAERTGAIHIGDRI 55

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
           L IN+    G  + EA  L+  + E ++L I+++     A
Sbjct: 56  LAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPA 95

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 54  ITFQKEG--SVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           +T   E    +GI + G        GI++ ++  G   +  G ++PGD +L+VNDM+ + 
Sbjct: 9   VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68

Query: 107 ITREEAVLFL---LSLQDQIHLIVQNRRDEYEH 136
           ++ ++AV  L   +     I L V        +
Sbjct: 69  MSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGN 101

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS---TVTLKVRRR 188
           I+  D ++  N ++ EN+    AV+VLRD       + L V + 
Sbjct: 52  IEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 67.0 bits (164), Expect = 6e-14
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 49  PDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
              R +  QK +   G  ++G     + V +V+PG  A   G++ GD+I+KVN   +   
Sbjct: 7   GVQRCVIIQKDQHGFGFTVSGDR--IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNS 64

Query: 108 TREEAVLFLLSLQDQIHLIVQNR 130
           +  E V  + S    + L +   
Sbjct: 65  SHLEVVKLIKS-GAYVALTLLGS 86

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           +K  DRI+  NG  + N  +   V++++ SG+ V L +      P+S
Sbjct: 47  VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSSGPSS 92

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 66.5 bits (163), Expect = 6e-14
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 52  RFITFQKEGS-VGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
           + I   ++ +  G R+ GG      I++  + P   A   G L+ GD+++ V+   + G 
Sbjct: 4   QDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63

Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDE 133
           + +  V  +     Q H+ +  R+  
Sbjct: 64  SHQLVVQLMQQAAKQGHVNLTVRQTR 89

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRR 188
           ++  D ++S +G  +    +   VQ+++ +     V L VR+ 
Sbjct: 46  LRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 198 QTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
               + L +      F I+ GN+    I++  +   +   A+    +L  GD L+ ++  
Sbjct: 2   MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHI---VPLGAADTDGRLRSGDELISVDGT 58

Query: 254 PTDGMSVKEARKLIDSSKEK--LSLTIRRE 281
           P  G S +   +L+  + ++  ++LT+R+ 
Sbjct: 59  PVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 67.5 bits (165), Expect = 6e-14
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 52  RFITFQKEGSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
           R +  +KEGS+ + L GG       + V+AV  G  A   G +  GD+I+ +N   +   
Sbjct: 20  RLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDY 79

Query: 108 TREEAVLFLLSLQDQIHLIVQ 128
           T  EA   L    +Q    + 
Sbjct: 80  TLAEAEAALQKAWNQGGDWID 100

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 191 LPASPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASPGTHQLAE 243
           + +  +     V+L + +K+    + + G        + V  V       A+     + +
Sbjct: 8   MFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYE---GGAAERHGGVVK 64

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR--PTAYQESTTL 294
           GD ++ IN       ++ EA   +  +  +    I   V    P  Y +  T 
Sbjct: 65  GDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTF 117

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 10/55 (18%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDS----GSTVTLKVRRRIVLPASPEPQ 198
           +   D IM+ NG  + +     A   L+ +    G  + L V         P  +
Sbjct: 62  VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC------PPKE 110

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 67.4 bits (165), Expect = 6e-14
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
             +   +  +K+   +GI + G          K+GIFV  V  G  A   G +Q  D+I+
Sbjct: 7   GLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 66

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           +V+ + + G+T+  A   L + +  +  ++   + 
Sbjct: 67  EVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKP 101

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
            I+VND+I+  +G+SL  V    A  VLR++   V   + R    P+ P 
Sbjct: 58  RIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK--PSGPS 105

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 17/109 (15%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTH 239
             S   +   V+L K       GI I+G             IFVK V    +  A+    
Sbjct: 3   SGSSGLELFPVELEKDEDG--LGISIIGMGVGADAGLEKLGIFVKTV---TEGGAAQRDG 57

Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY 288
           ++   D +++++     G++   A  ++ ++K  +   I RE P   + 
Sbjct: 58  RIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPSS 106

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 67.3 bits (165), Expect = 7e-14
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 54  ITFQKEG-SVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
           I  +K    +G  +T  +        I+V  + P   A   G L+ GD++++VN +D+ G
Sbjct: 15  IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74

Query: 107 ITREEAVLFL--LSLQDQIHLIVQNRRDEYE 135
            ++EE V  L    ++  + L+V  + + + 
Sbjct: 75  KSQEEVVSLLRSTKMEGTVSLLVFRQEEAFH 105

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRRIVLPASP 195
            A Q G    +K  DR++  NG+ L        V +LR +    TV+L V R+     + 
Sbjct: 51  AAIQDG---RLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ---EEAF 104

Query: 196 EPQTL 200
            P+ +
Sbjct: 105 HPREM 109

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 198 QTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
           + L +QL K  +   F I   +        I+VK +   L   A+    +L  GD L+++
Sbjct: 11  KRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNI---LPRGAAIQDGRLKAGDRLIEV 67

Query: 251 NNHPTDGMSVKEARKLIDSSKEK--LSLTIRREVPRP 285
           N     G S +E   L+ S+K +  +SL + R+    
Sbjct: 68  NGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAF 104

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 48  EPDPRFITFQKEG-SVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
                 I  +K    +G  +T  +        I+V  + P   A   G L+ GD++++VN
Sbjct: 28  IGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 87

Query: 101 DMDMKGITREEAVLFL--LSLQDQIHLIVQNRRD 132
            +D+ G ++EE V  L    ++  + L+V  + D
Sbjct: 88  GVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRR 188
           +K  DR++  NG+ L        V +LR +    TV+L V R+
Sbjct: 77  LKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEG 244
                 + L +QL K  +   F I   +        I+VK +   L   A+    +L  G
Sbjct: 24  NTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNI---LPRGAAIQDGRLKAG 80

Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEK--LSLTIRRE 281
           D L+++N     G S +E   L+ S+K +  +SL + R+
Sbjct: 81  DRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
                 +   K+             + + V AV  G  A    L PGD+IL++N+   + 
Sbjct: 6   SGVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAED 64

Query: 107 ITREEAVLFLLSLQDQIHLIVQ 128
           ++ E AV  L   +D + + V 
Sbjct: 65  LSWERAVDILREAEDSLSITVV 86

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
           +        V++ K     D+G  +     + V  VT            +L  GD +L++
Sbjct: 3   SGSSGVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAG-----GSAHGKLFPGDQILQM 57

Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
           NN P + +S + A  ++  +++ LS+T+ R     
Sbjct: 58  NNEPAEDLSWERAVDILREAEDSLSITVVRCTSSG 92

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           +   D+I+  N    E++ +  AV +LR++  ++++ V R      S
Sbjct: 48  LFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCTSSGPS 94

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 51  PRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
           PR I F   EG +G  L G     + V  + P   ASL G + GD I+ +  +D K +T 
Sbjct: 16  PRGIHFTVEEGDLGFTLRGNT--PVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTV 73

Query: 110 EEAVLFLLSL-QDQIHLIVQNRRDE 133
            E +  L S   +++ + V +  D 
Sbjct: 74  SEVMKLLKSFGGEEVEMKVVSLLDS 98

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 48  EPDPRFITFQKEG--SVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
             +   +   ++   S+GIR+ G           GI+V +V PGS A   G +Q  DKI+
Sbjct: 13  LFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIV 72

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
            V+ ++++G    + V  L +    +HL +  R+            D 
Sbjct: 73  AVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDR 120

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           I+VND+I++ +G++++       V+VLR++G  V L + RR    ++   + 
Sbjct: 65  IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEP 116

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGITRE 110
           +  Q     G  L GG  +   + V+ ++ G  A+L Q ++ GD+++ +N   + G +R+
Sbjct: 15  VQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQ 73

Query: 111 EAVLFLLSLQDQIHLIVQNRRDE 133
           EA++ +      + LIV+ RR+ 
Sbjct: 74  EALILIKGSFRILKLIVR-RRNS 95

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
               Q + VQL        +G  + G       + V ++    D   +  + ++  GD L
Sbjct: 7   GGSFQYVPVQLQGGAP---WGFTLKGGLEHCEPLTVSKIE---DGGKAALSQKMRTGDEL 60

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
           + IN  P  G   +EA  LI  S   L L +RR    P++
Sbjct: 61  VNINGTPLYGSR-QEALILIKGSFRILKLIVRRRNSGPSS 99

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           ++  D +++ NG  L       A+ +++ S   + L VRRR   P+S
Sbjct: 54  MRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSGPSS 99

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 48  EPDPRFITFQK-EGSVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
            P+ + +   K    +G  +          +  I + ++     A   G L PGD+++ V
Sbjct: 13  SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72

Query: 100 NDMDMKGITREEAVLFLLSL-QDQIHLIVQ 128
           N+  +   +  EAV  L ++    +HL + 
Sbjct: 73  NEYCLDNTSLAEAVEILKAVPPGLVHLGIC 102

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-TVTLKVRRRIVLPAS 194
           +   DR++S N   L+N     AV++L+      V L +      P+S
Sbjct: 63  LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG---PSS 107

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQLAE 243
            A   P+   V+L K  K   F I+          + I ++ +   + +  +  +  L  
Sbjct: 9   LALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSL---VADGVAERSGGLLP 65

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRR 280
           GD L+ +N +  D  S+ EA +++ +     + L I  
Sbjct: 66  GDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 54  ITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           +  ++     G R+ GG      I + AV     A   G L PGD+++ V+ + + G T 
Sbjct: 13  VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72

Query: 110 EEAVLFLLSLQDQIHLIVQNRRD 132
              +  +        + +  RR 
Sbjct: 73  RYVIDLMHHAARNGQVNLTVRRK 95

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRRIVLPASPE 196
           +   D ++  +G+ +    +   + ++  +     V L VRR++   + P 
Sbjct: 53  LHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV--LSGPS 101

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
             S   + L V L +      F I+ G++    I +  V   +   ++    +L  GD L
Sbjct: 3   SGSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAV---IAMGSADRDGRLHPGDEL 59

Query: 248 LKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREVPRP 285
           + ++  P  G + +    L+  +    +++LT+RR+V   
Sbjct: 60  VYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSG 99

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 49  PDPRFITFQKEGS-------VGIRLTGGN----KVGIFVTAVQPGSPASLQGLQPGDKIL 97
              + +T +K  +           L        ++  FV  V   SPA L GL PGD I 
Sbjct: 3   QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIA 62

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129
            VN ++++GI   E V  + +  + + L    
Sbjct: 63  SVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           +   D I S NGL++E + +   V +++ SG+ + L+   
Sbjct: 55  LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 47  VEPDPRFITFQKE--GSVGIRLTGG---------NKVGIFVTAVQPGSPASLQG-LQPGD 94
                  +   ++     G  +              V   +  +  GSPA     L+ GD
Sbjct: 7   GSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGD 66

Query: 95  KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           +IL VN   +  +   + V  +      + L +  + +
Sbjct: 67  RILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 17/52 (32%), Positives = 34/52 (65%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           +KV DRI++ NG S+ N+ +   V++++D+G +VTL++  +  L +   P +
Sbjct: 62  LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSS 113

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 17/114 (14%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK------------IFVKEVTHRLDNNASPGT 238
            +S   QT  V + + ++ + FG  I+ +               +  +   +D + +   
Sbjct: 4   GSSGSLQTSDVVIHR-KENEGFGFVIISSLNRPESGSTITVPHKIGRI---IDGSPADRC 59

Query: 239 HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQEST 292
            +L  GD +L +N      M   +  KLI  +   ++L I  +    +    S+
Sbjct: 60  AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSS 113

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 46  FVEPDPRFITFQKEGS-------VGIRLTGGNK----VGIFVTAVQPGSPASLQGLQPGD 94
           F     + +T +K+ +          R    N     +   +  +Q  SPA   GLQ GD
Sbjct: 11  FSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGD 70

Query: 95  KILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
            +  +N +  +G T ++ V  + S  + + +  
Sbjct: 71  VLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
           ++  D + + NG+S E   Y   V ++R SG+ +T++ 
Sbjct: 66  LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 65.3 bits (159), Expect = 5e-13
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASL--QGLQPGDKILKVND 101
             +   I  + +  G  G  + GG   K+ + V+ V PG+PA L    L  GD+++ +N 
Sbjct: 13  HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 72

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQ 128
            D+   T ++ VLF+ +  ++    + 
Sbjct: 73  RDIAEHTHDQVVLFIKASCERHSGELM 99

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGD 245
              P    + +++    +   FG  + G       + V  V       A     +L EGD
Sbjct: 9   GGIPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGD 65

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
            ++ IN       +  +    I +S E+ S  +   V RP A  +     G
Sbjct: 66  QVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV-RPNAVYDVVEESG 115

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS----TVTLKVRRRIVLPASPEPQT 199
           +   D+++  NG  +    +   V  ++ S       + L VR   V     E   
Sbjct: 61  LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGP 116

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 68.6 bits (167), Expect = 6e-13
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 33  AVQPGSPDLFSIFFVEPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQ 88
           A +PG+        +    R +T +K   G +GI + GG  NK+ I ++ +  G  A   
Sbjct: 60  AAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQT 119

Query: 89  G-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
             L  GD IL VN  D+   T +EAV  L     ++ L V+  ++   + 
Sbjct: 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYF 169

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           + V D I+S NG  L +  +  AVQ L+ +G  V L+V+    +    + 
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKN 171

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 65.2 bits (159), Expect = 6e-13
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 48  EPDPRFITFQKEG--SVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILK 98
           E     I     G   +G+ L G         +GIF+ ++  G  A   G L+  D+++ 
Sbjct: 23  EQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIA 82

Query: 99  VNDMDMKGITREEAVLFL-------LSLQDQIHLIVQNRRD 132
           VN   + G +  EA+  L        +++  I L++  R  
Sbjct: 83  VNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-------TVTLKVRRR 188
           +++ND++++ NG +L       A++ LR S S        + L + RR
Sbjct: 74  LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 64.4 bits (157), Expect = 7e-13
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPA--SLQGLQPGDKILKVND 101
             +   I  + +  G  G  + GG   K+ + V+ V PG+PA   +  L  GD+++ +N 
Sbjct: 15  HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 74

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQ 128
            D+   T ++ VLF+ +  ++    + 
Sbjct: 75  RDIAEHTHDQVVLFIKASCERHSGELM 101

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGD 245
              P    + +++    +   FG  + G       + V  V       A     +L EGD
Sbjct: 11  GGIPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGD 67

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
            ++ IN       +  +    I +S E+ S  +   V RP
Sbjct: 68  QVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV-RP 106

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 5/42 (11%), Positives = 17/42 (40%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           +   D+++  NG  +    +   V  ++ S    + ++   +
Sbjct: 63  LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV 104

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 54  ITFQK-EGSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
              +K     G  + GG      + + ++    PA+L G ++ GD I+ VND  + G T 
Sbjct: 4   TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63

Query: 110 EEAVLFL--LSLQDQIHLIV 127
            + V     + +   + L +
Sbjct: 64  AQVVKIFQSIPIGASVDLEL 83

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRR 187
           ++  D I+S N   +    +   V++ +    G++V L++ R
Sbjct: 44  METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 15/88 (17%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 199 TLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHP 254
           ++  +L KS +   F ++ G++    + +K +   + +  +    ++  GDV++ +N+  
Sbjct: 1   SIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSL---VLDGPAALDGKMETGDVIVSVNDTC 57

Query: 255 TDGMSVKEARKLIDSSK--EKLSLTIRR 280
             G +  +  K+  S      + L + R
Sbjct: 58  VLGHTHAQVVKIFQSIPIGASVDLELCR 85

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 49  PDPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
            DPR IT  K+  G VG     G      +T++   S A+  GL     I ++N  ++ G
Sbjct: 3   MDPRTITMHKDSTGHVGFIFKNGK-----ITSIVKDSSAARNGLLTEHNICEINGQNVIG 57

Query: 107 ITREEAVLFLLSLQDQIHLIV 127
           +   +    L +    + + +
Sbjct: 58  LKDSQIADILSTSGTVVTITI 78

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
            A++ G    +     I   NG ++  ++      +L  SG+ VT+ +
Sbjct: 35  SAARNG----LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 48  EPDPRF--ITFQKEGSVGIRLTGGNKV----GIFVTAVQPGSPASLQG-LQPGDKILKVN 100
           + DP F  IT  KE  +G+++ GG        +++  V PG      G L+PGD+++ +N
Sbjct: 11  DRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 70

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQ 128
              M G++ EEA   +   + +     +
Sbjct: 71  KESMIGVSFEEAKSIITRAKLRSESPWE 98

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSG----STVTLKVRRR 188
           +K  D+++S N  S+  V +  A  ++  +     S   +   R 
Sbjct: 60  LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-------IFVKEVTHRLDNNASPGTHQLAE 243
             SP  +    ++    K+   G+ ILG         +++ EV   +         +L  
Sbjct: 6   SGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEV---IPGGDCYKDGRLKP 62

Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
           GD L+ IN     G+S +EA+ +I  +K +          R 
Sbjct: 63  GDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 15/96 (15%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 48  EPDPRFITFQK---EGSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
           E +   +   +   +  +G+ +       + +GI+++ + P S A+  G ++ GD+I+++
Sbjct: 17  ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQI 76

Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
           N ++++      A+L          L++     + +
Sbjct: 77  NGIEVQNREEAVALLTSEE-NKNFSLLIARPELQLD 111

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
           I+  DRI+  NG+ ++N E   A+    ++ +   L  R  + L     
Sbjct: 67  IREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWM 115

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 64.6 bits (157), Expect = 2e-12
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 36  PGSPDLFSIFFVE--PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQP 92
               +   +F VE   D   +     G       G  K+GIFV  V  G  A   G +Q 
Sbjct: 73  EKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 132

Query: 93  GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
            D +++V+   + G+T+  A   L + + ++  ++
Sbjct: 133 NDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
            A + G    I+VND ++  +G SL  V    A  VLR++   V   + R
Sbjct: 123 AAHRDG---RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
            IFV  V+ G PA   GL  GD+I+KVN   + G T  + +  + +    + L V  +  
Sbjct: 62  TIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS 121

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           +   DRI+  NG S+    Y   + ++++S +T+ L V  +   P+S
Sbjct: 79  LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSGPSS 125

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 47  VEPDPRFITFQKEGS---VGIRLTGGNKV-----------GIFVTAVQPGSPASLQG-LQ 91
           +    R +   K G+   +G  +  G+ V           GIF++ + PG  A   G L 
Sbjct: 26  LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLA 85

Query: 92  PGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
             D++L+VN +++ G + ++    +++    + + V+
Sbjct: 86  VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 7/40 (17%), Positives = 17/40 (42%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           + VND ++  NG+ +          ++  +   + + VR 
Sbjct: 84  LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 123

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 188 RIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVL 247
           R+    + +P    ++   S +    G+     IF+  +        +  T  LA  D +
Sbjct: 34  RLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVP---GGLAQSTGLLAVNDEV 90

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
           L++N     G S+ +   ++ ++   L +T+R    R
Sbjct: 91  LEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR 127

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 47  VEPDPRFITFQK-EGSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
           ++        +K     G  + GG      + + ++    PA+L G ++ GD I+ VND 
Sbjct: 15  LKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT 74

Query: 103 DMKGITREEAVLFL 116
            + G T  + V   
Sbjct: 75  CVLGHTHAQVVKIF 88

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
           P+  + + +  +L KS +   F ++ G++    + +K +   + +  +    ++  GDV+
Sbjct: 12  PSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSL---VLDGPAALDGKMETGDVI 68

Query: 248 LKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 293
           + +N+    G +  +  K+  S      + L + R  P P    +  T
Sbjct: 69  VSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNT 116

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIVLPASPEP 197
           ++  D I+S N   +    +   V++ +    G++V L++ R   LP  P+ 
Sbjct: 62  METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDD 113

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
             + R +  +K     +G+ L             +  +  G PA   G L  GD++  +N
Sbjct: 7   GDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAIN 66

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIV 127
              + G+        +   + Q  + +
Sbjct: 67  GTSLVGLPLAACQAAVRETKSQTSVTL 93

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           + + DR+ + NG SL  +        +R++ S  ++ +   
Sbjct: 56  LSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIV 96

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL--------GNKIFVKEVTHRLDNNASPGTHQLAEGD 245
           S       V L K R+ +  G+ L             +  + H      +  +  L+ GD
Sbjct: 5   SSGDNCREVHLEK-RRGEGLGVALVESGWGSLLPTAVIANLLH---GGPAERSGALSIGD 60

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
            L  IN     G+ +   +  +  +K + S+T+      P
Sbjct: 61  RLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPP 100

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 47  VEPDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
           ++      T +K     G  + GG      + V +V P  PA+  G ++ GD I+ +N++
Sbjct: 16  LKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV 75

Query: 103 DMKGITREEAVLFL 116
            + G T  + V   
Sbjct: 76  CVLGHTHADVVKLF 89

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIVLPASPEPQT 199
           ++  D I+  N + +    +   V++ +    G +V L + R   LP  PE   
Sbjct: 63  METGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPA 116

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
            +  +   L   L KS     F II G++    + VK V   + +  +    ++  GDV+
Sbjct: 13  ASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSV---IPDGPAAQDGKMETGDVI 69

Query: 248 LKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 293
           + IN     G +  +  KL  S    + ++L + R  P P   ++   
Sbjct: 70  VYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 63  GIRLTGGN----KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
            IR+  G+     V   V +V+ GSPA   GL+ GD I  +N   + G+   + V  LL 
Sbjct: 21  AIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK 80

Query: 119 LQDQIHLIVQNRRDEYEHVV 138
             ++I L      +  E  V
Sbjct: 81  SGNKISLRTT-ALENTETSV 99

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  D I   NG S+  + +   V++L  SG+ ++L+    
Sbjct: 52  LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTAL 92

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 16/96 (16%)

Query: 49  PDPRFITFQKEGS-------VGIRLTGGNK---------VGIFVTAVQPGSPASLQGLQP 92
              + +  QK+ S        G +     +            ++ +V  G  A   GL+ 
Sbjct: 6   IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 65

Query: 93  GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
           GD +++VN  ++  +   + V  +    + + + V 
Sbjct: 66  GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 11/45 (24%), Positives = 24/45 (53%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
           +++ D ++  NG ++  V +   V ++R  G+T+ +KV      P
Sbjct: 63  LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 107

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 16/108 (14%)

Query: 193 ASPE-PQTLRVQLSKSRKKDDFGIIL-GNKIFVKEVTHRLDNNASPGTH----------- 239
            S    +   V L K +  + FG +L G K                  +           
Sbjct: 1   GSDYIIKEKTVLLQK-KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAW 59

Query: 240 --QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
              L  GD L+++N      +  ++   +I      L + +      P
Sbjct: 60  RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 107

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 47  VEPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
           ++   + +   K E S+G+ +T       F+  ++ G        +  GD I  +N  ++
Sbjct: 2   MKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENI 61

Query: 105 KGITREEAVLFLLSL 119
            G    +    L  L
Sbjct: 62  VGWRHYDVAKKLKEL 76

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
               V + KS  +D  G+ I  N     F+K +              +  GD +  IN  
Sbjct: 5   IEKEVNVYKS--EDSLGLTITDNGVGYAFIKRIKD---GGVIDSVKTICVGDHIESINGE 59

Query: 254 PTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
              G    +  K +   K++   T++   P+
Sbjct: 60  NIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 52  RFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGIT 108
           R I F+K     +GI L    K    V  +  G     QG L  GD+IL++N  ++   +
Sbjct: 14  RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS 73

Query: 109 REEAVLFLLSLQDQIHLIV 127
            ++    +   +  I L V
Sbjct: 74  VDQLQKAMKETKGMISLKV 92

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           + V D I+  NG ++ N       + ++++   ++LKV  
Sbjct: 55  LHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIP 94

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 195 PEPQTLR-VQLSKSRKKDDFGIIL----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
                +R +Q  K  ++   GI L         V  + H            L  GD +L+
Sbjct: 8   HSGHMVRLIQFEKVTEEP-MGICLKLNEKQSCTVARILH---GGMIHRQGSLHVGDEILE 63

Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IN       SV + +K +  +K  +SL +  
Sbjct: 64  INGTNVTNHSVDQLQKAMKETKGMISLKVIP 94

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 59.1 bits (143), Expect = 8e-11
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 54  ITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
                    +G+ +       + ++ +     A+  G LQPGD ++ V   ++ G T  E
Sbjct: 31  TKLTVGNLGLGLVVIQNGP-YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLRE 89

Query: 112 AVLFL--LSLQDQIHLIVQ 128
            +  L  +++   + +   
Sbjct: 90  FLKLLQNITIGTVLQIKAY 108

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 9/63 (14%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIV-LPAS 194
            A+  G    ++  D ++S    ++        +++L++   G+ + +K  R  + +P  
Sbjct: 61  AAASDG---ILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQE 117

Query: 195 PEP 197
            + 
Sbjct: 118 WQD 120

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 177 SGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNK-IFVKEVTHRLDNNAS 235
           SGS    +   +     S   + ++ +L+         +I     + +  +   ++  A+
Sbjct: 6   SGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHL---INKGAA 62

Query: 236 PGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRR-EVPRPTAYQEST 292
                L  GDVL+ + +    G +++E  KL+ +      L +   R  +  P  +Q+S 
Sbjct: 63  ASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSG 122

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 50  DPRFITFQKEG--SVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
               +   K+   ++GI + GG    +    +  +Q G  A   G L+ G  IL+VN + 
Sbjct: 5   SSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64

Query: 104 MKGITREEAV 113
           ++G    EA 
Sbjct: 65  LRGKEHREAA 74

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           +KV   I+  NGL+L   E+  A +++ ++  T        +V   +  P
Sbjct: 51  LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGP 100

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 16/96 (16%)

Query: 49  PDPRFITFQKEGSVG----IR------------LTGGNKVGIFVTAVQPGSPASLQGLQP 92
              + +  QK+ S G    +R             T       ++ +V  G  A   GL+ 
Sbjct: 26  IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 85

Query: 93  GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
           GD +++VN  ++  +   + V  +    + + + V 
Sbjct: 86  GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
           +++ D ++  NG ++  V +   V ++R  G+T+ +KV     +   P+  
Sbjct: 83  LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM---VTRHPDMD 130

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 8/45 (17%), Positives = 17/45 (37%)

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
           L  GD L+++N      +  ++   +I      L + +      P
Sbjct: 83  LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 127

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 51  PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
            + I   K    +G  +        I V  +  G  A   G +  GD++ +VN + ++  
Sbjct: 5   VKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDK 64

Query: 108 TREEAVLFLLSLQDQIHLIV 127
             EE +  L   Q  I   +
Sbjct: 65  RPEEIIQILAQSQGAITFKI 84

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
           I V D +   NG+ +E+      +Q+L  S   +T K+
Sbjct: 47  IHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 201 RVQLSKSRKKDDFGIILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDG 257
            ++L K+R+     I    +   I V  +       A+  +  +  GD L ++N  P + 
Sbjct: 7   IIRLVKNREPLGATIKKDEQTGAIIVARIMR---GGAADRSGLIHVGDELREVNGIPVED 63

Query: 258 MSVKEARKLIDSSKEKLSLTI 278
              +E  +++  S+  ++  I
Sbjct: 64  KRPEEIIQILAQSQGAITFKI 84

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 36  PGSPDLFSIFFVEPDPRFITFQK--EGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQP 92
                     +     + +  +K  +  +G  +       + ++ +  G  A   G L  
Sbjct: 11  DERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD-SVIISRIVKGGAAEKSGLLHE 69

Query: 93  GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
           GD++L++N ++++G    E    L  +   +  ++
Sbjct: 70  GDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 104

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   D ++  NG+ +   +      +L D   T+T  +   
Sbjct: 67  LHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 177 SGSTVTLKVRRRIVLPASPEPQTLR-VQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDN 232
           SGS+  +   R          +T++ V++ K+ +    G  +    + + +  +      
Sbjct: 3   SGSSGPITDERVYESIGHYGGETVKIVRIEKA-RDIPLGATVRNEMDSVIISRIVK---G 58

Query: 233 NASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
            A+  +  L EGD +L+IN     G  V E   L+      L+  +       + 
Sbjct: 59  GAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGPSSG 113

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 52  RFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGIT 108
           R + FQK     +GI L         V  +  G     QG L  GD+I ++N + +   T
Sbjct: 3   RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62

Query: 109 REEAVLFLLSLQDQIHLIVQNRRDEY 134
            E+    L  ++  I   +     E+
Sbjct: 63  VEQLQKMLREMRGSITFKIVPSYREF 88

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
            + V D I   NG+S+ N       ++LR+   ++T K+ 
Sbjct: 43  TLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV 82

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 201 RVQLSKSRKKDDFGIIL----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTD 256
            VQ  K+   +  GI L     N   V  + H            L  GD + +IN     
Sbjct: 4   LVQFQKN-TDEPMGITLKMNELNHCIVARIMH---GGMIHRQGTLHVGDEIREINGISVA 59

Query: 257 GMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQE 290
             +V++ +K++   +  ++  I   VP   +Y+E
Sbjct: 60  NQTVEQLQKMLREMRGSITFKI---VP---SYRE 87

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 58.4 bits (140), Expect = 6e-10
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 60  GSVGIRLTGG----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
             +G  ++GG          +  GIFVT VQP  PAS + LQPGDKI++ N      I  
Sbjct: 2   PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYSFINIEH 60

Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFH 147
            +AV  L + Q+ + LI+              R +   
Sbjct: 61  GQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDG 98

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           ++  D+I+ ANG S  N+E+G AV +L+   +TV L + R +   A  E + 
Sbjct: 41  LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRV 92

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 48  EPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
           + +   +T  K     G  +            +         GL  GD I+++N  +++ 
Sbjct: 8   QAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQN 64

Query: 107 ITREEAVLFLLSLQ--DQIHLIVQ 128
           ++  E V  L       +  LI+ 
Sbjct: 65  LSHTEVVDILKDCPIGSETSLIIH 88

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRR 188
           +   D I+  N  +++N+ +   V +L+D   GS  +L + R 
Sbjct: 48  LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
           +S + + + + + K  +   FG  I  +     VK++          G   L EGD++++
Sbjct: 5   SSGQAELMTLTIVKGAQ--GFGFTIADSPTGQRVKQIL------DIQGCPGLCEGDLIVE 56

Query: 250 INNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTA 287
           IN      +S  E   ++       + SL I R     + 
Sbjct: 57  INQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGPSSG 96

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 59  EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
              +G  +  G      + ++  G  A   G++ G +I+++N   +     E+ V  L +
Sbjct: 23  RYQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN 77

Query: 119 LQDQIHLIV 127
              +IH+  
Sbjct: 78  AVGEIHMKT 86

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 17/84 (20%)

Query: 123 IHLIVQNRRDEYEHVVASQRG------------DSFHIKVNDRIMSANGLSLENVEYGTA 170
           +  ++  R D    +  S +             +   ++V  RI+  NG S+    +   
Sbjct: 12  VTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKI 71

Query: 171 VQVLRDSGSTVTLKVRRRIVLPAS 194
           V +L ++   + +K      +PA+
Sbjct: 72  VHILSNAVGEIHMK-----TMPAA 90

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 37  GSPDLFSIFFVEPDPRFITFQKEGSV----GIRLTGGNKVG---IFVTAVQPGSPASLQG 89
            S     I       + I  +K  +     G  L+   + G   ++V +V+    AS +G
Sbjct: 2   SSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG 61

Query: 90  LQPGDKILKVNDMDMKGITREEAVLFL 116
           L+ GD+IL++N+     +       FL
Sbjct: 62  LKAGDEILEINNRAADALNSSMLKDFL 88

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 199 TLRVQLSKSRKKDD-FGIIL-------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
           T  + + KS    D +G  L         +++V  V       AS     L  GD +L+I
Sbjct: 16  TQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKE--TGLASKK--GLKAGDEILEI 71

Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
           NN   D ++    +  +      L +    E+    
Sbjct: 72  NNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGV 107

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 49  PDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
            +   +   K     G  +       G  V  +        +GL+ GD I++VN  +++ 
Sbjct: 2   MELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVD--SPRSRGLKEGDLIVEVNKKNVQA 59

Query: 107 ITREEAVLFLLSLQ--DQIHLIVQNR 130
           +T  + V  L+      ++ L+VQ +
Sbjct: 60  LTHNQVVDMLVESPKGSEVTLLVQRQ 85

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRRR 188
           +K  D I+  N  +++ + +   V +L +S  GS VTL V+R+
Sbjct: 43  LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 197 PQTLRVQLSKSRKKDDFGIIL-----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKIN 251
            + + V + K      FG  +     G    VK++   +D+  S G   L EGD+++++N
Sbjct: 2   MELITVHIVKGPMG--FGFTIADSPGGGGQRVKQI---VDSPRSRG---LKEGDLIVEVN 53

Query: 252 NHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 281
                 ++  +   ++  S    +++L ++R+
Sbjct: 54  KKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 52  RFITFQKEGSV----GIRLTGGNKVG---IFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
             I  +K  +     G  L+   + G   ++V +V+    AS +GL+ GD+IL++N+   
Sbjct: 8   HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 67

Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRD 132
             +       FL   Q  + L+V+   +
Sbjct: 68  DALNSSMLKDFL--SQPSLGLLVRTYPE 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 73/483 (15%), Positives = 131/483 (27%), Gaps = 145/483 (30%)

Query: 94  DKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQN-----RRDEYEHVVASQRGDSFH 147
           D I+   D            L L  +L  +   +VQ       R  Y+ ++         
Sbjct: 52  DHIIMSKD-------AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-----SPIK 99

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVT---------LKVRRRIVLPASPEP- 197
            +           S+    Y      L +                   R+ +L   P   
Sbjct: 100 TEQRQP-------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 198 -----------QTLRVQLSKSRK---KDDFGII---LGNKIFVKEVTHRLDN---NASPG 237
                        + + +  S K   K DF I    L N    + V   L        P 
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 238 THQLAEGDVLLKINNHPTDGMSVKEA-RKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
               ++    +K+  H     S++   R+L+ S   +  L +   V      Q +     
Sbjct: 213 WTSRSDHSSNIKLRIH-----SIQAELRRLLKSKPYENCLLVLLNV------QNAKAW-- 259

Query: 297 KENNYMDP-----LSTNYSSQNLYVQPPTRG------GPNNLLEDKS-NLV--------- 335
              N  +      L+T +     ++   T            L  D+  +L+         
Sbjct: 260 ---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 336 --PRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQF 393
             PR   + NP     LS +   +     + D+    N +    II              
Sbjct: 317 DLPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTII-------------- 359

Query: 394 NATKKELSASESRGSF-----FKRRRNSHRRSKSLSKDHWDDVVFGDS------------ 436
            ++   L  +E R  F     F    ++H  +  LS   W DV+  D             
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVF--PPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSL 416

Query: 437 ISKFPAYERVSLRHPGFIRPVVLFGPVAD--------LARDKLLKDF-PDKFSAPRKFNF 487
           + K P    +S+    ++    L   + +        +    + K F  D    P    +
Sbjct: 417 VEKQPKESTISI-PSIYLE---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 488 ILW 490
              
Sbjct: 473 FYS 475

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 403

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 12/114 (10%)

Query: 48  EPDPRFITFQKE-----GSVGIRLTG------GNKVGIFVTAVQPGSPASLQGLQPGDKI 96
             D  F            S G   T              ++ V PGSPA   GLQ G  I
Sbjct: 55  SMDNGFSKIDSLLDEPIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWI 114

Query: 97  LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKV 150
           + +N   +      E +    + Q QI +  +   ++ E            +  
Sbjct: 115 MMMNGDYITKKVESELL-QGSTRQLQIGVYKEVVGEDGEVTGGVVPIGETTMPA 167

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Length = 388

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 60  GSVGIRLTGGNKVGIFVTAVQP--GSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
             VG+ +T     G  V  + P  G PA   G + GD I+ V+   +KG++  +  
Sbjct: 85  TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVS 140

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 58/209 (27%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G FV+ V P S A+  G++ GD I  +N   +                            
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA------------------------ 322

Query: 133 EYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
                V +       + V  ++                + +LRD G  V + +     L 
Sbjct: 323 ALRAQVGT-------MPVGSKL---------------TLGLLRD-GKQVNVNL----ELQ 355

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK-IFVKEVTHRLDNNASPGTHQLAEGDVLLKIN 251
            S + Q     +    +  +      ++ + V  V              L +GDV++  N
Sbjct: 356 QSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNV----KTGTPAAQIGLKKGDVIIGAN 411

Query: 252 NHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
                  ++ E RK++DS    L+L I+R
Sbjct: 412 QQAVK--NIAELRKVLDSKPSVLALNIQR 438

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 69  GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           G   G+ V  V+ G+PA+  GL+ GD I+  N   +K I
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI 418

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 69/218 (31%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G  V+ V P SPA L GL+ GD I ++ND                         +     
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTK-----------------------ITQATQ 319

Query: 133 EYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
             +  ++        ++V   +                + V RD    +TL      V+ 
Sbjct: 320 -VKTTISL-------LRVGSTV---------------KIIVERD-NKPLTLSA----VVT 351

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLD------NNASPGT----HQLA 242
                +    Q  +S     +G+ L    F +E     +        AS  +      + 
Sbjct: 352 DIKSHE----QKLQSNNPFLYGLALRA--FEQESPPHGNVIGVQVVGASENSAGWRAGIR 405

Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
            GD+++  N  P     VK  + +    K++L + + R
Sbjct: 406 PGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLR 441

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 53/208 (25%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G FV+ V PGS ++  G++ GD I  +N   +                            
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFA------------------------ 299

Query: 133 EYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
           E    +A+        +   ++                + +LR+ G  + ++V       
Sbjct: 300 ELRSRIAT-------TEPGTKV---------------KLGLLRN-GKPLEVEVTLDTSTS 336

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
           +S   + +   L  +   D      G  I + EV       +      L + DV++ +N 
Sbjct: 337 SSASAEMITPALEGATLSDGQLKDGGKGIKIDEV----VKGSPAAQAGLQKDDVIIGVNR 392

Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRR 280
              +  S+ E RK++ +    ++L I R
Sbjct: 393 DRVN--SIAEMRKVLAAKPAIIALQIVR 418

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/46 (36%), Positives = 21/46 (45%)

Query: 69  GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
               GI +  V  GSPA+  GLQ  D I+ VN   +  I     VL
Sbjct: 360 DGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVL 405

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 6/84 (7%)

Query: 48  EPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
                 I   K     G  +            +         GLQ GD I ++   +++ 
Sbjct: 10  AGLLVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQ---GLQKGDIIKEIYHQNVQN 66

Query: 107 ITREEAVLFL--LSLQDQIHLIVQ 128
           +T  + V  L    +   + L++ 
Sbjct: 67  LTHLQVVEVLKQFPVGADVPLLIL 90

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIVLPASPEPQT 199
           ++  D I      +++N+ +   V+VL+    G+ V L + R      +   + 
Sbjct: 50  LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKM 103

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
                  + + L K  K   FG  + +    ++V   LD+    G   L +GD++ +I +
Sbjct: 7   YKKAGLLVTIPLIKGPK--GFGFAIADSPTGQKVKMILDSQWCQG---LQKGDIIKEIYH 61

Query: 253 HPTDGMSVKEARKLI--DSSKEKLSLTIRREVPRPTAYQESTTLPGKEN 299
                ++  +  +++        + L I R  P P+  + +    G   
Sbjct: 62  QNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP-PSPTKTAKMGSGSGQ 109

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 30/256 (11%), Positives = 71/256 (27%), Gaps = 31/256 (12%)

Query: 377 GIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDS 436
           G IP+  + E +        K+    S+ +   F ++         +       V+ G S
Sbjct: 93  GFIPSPVKLENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPS-MRPVVLVGPS 151

Query: 437 ISKFPAYERVSLR----HPG-FIRPVVLFGPVAD--LARDKLLKDFPDKFSAPRKFNFIL 489
           +  +   + +           F   + +    AD  LA+  +L +       P K   I 
Sbjct: 152 LKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNN-------PSKHAIIE 204

Query: 490 WATIKDT-AMYQSSKEPGMYQGKDSMYQGK-----DSMYQGKESMYQGKDS---MYQGKD 540
            +  + + A  QS  E      +      +              + +   +   +Y    
Sbjct: 205 RSNTRSSLAEVQSEIERIFELAR----TLQLVVLDADTINHPAQLSKTSLAPIVVYVKIS 260

Query: 541 SMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEK 600
           S    +  +      + +        + KL +    +F   +  + ++       + +E 
Sbjct: 261 SPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEA 320

Query: 601 ---QQSSPVWISETKS 613
                  P        
Sbjct: 321 YWKATHPPSSNLPNPL 336

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 57  QKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFL 116
              G   +   G    G+ + +V PGSPAS + L PG  I  +N M    +T   A L  
Sbjct: 10  HSSGRENLYFQGHQPDGVQIDSVVPGSPAS-KVLTPGLVIESINGMPTSNLTTYSAALKT 68

Query: 117 LSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           +S+ + I++     +  +         +S
Sbjct: 69  ISVGEVINITT--DQGTFHLKTGRNPNNS 95

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 60  GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQP-GDKILKVNDMDMKGITREEAVLFLLS 118
            S  + + GG   G  V  VQ  SP    GL+P  D I+ +N   +         L   +
Sbjct: 4   SSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKAN 63

Query: 119 LQDQIHLIVQNRRDEYEHVV 138
           ++  + +++ + +       
Sbjct: 64  VEKPVKMLIYSSKTLELRET 83

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G+ +  V  GSPA   GL+PGD IL + +   + +   E V   +  Q Q+ + +  RR 
Sbjct: 36  GVLIHKVILGSPAHRAGLRPGDVILAIGE---QMVQNAEDVYEAVRTQSQLAVQI--RRG 90

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 9/63 (14%), Positives = 20/63 (31%)

Query: 76  VTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
           V  +   S A+   + PG ++  V+ ++          L      +   + V     +  
Sbjct: 6   VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQR 65

Query: 136 HVV 138
             V
Sbjct: 66  RDV 68

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 52  RFITFQKEGSVGIRLT-GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           R +  +K     + +T       + +  +  G   + QG L  GD I +VN   + G   
Sbjct: 8   RMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDP 66

Query: 110 EEAVLFLLSLQDQIHLIV 127
                 L +    + L +
Sbjct: 67  RALQELLRNASGSVILKI 84

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 76  VTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           +  VQP S AS  GLQ GD+I+ V+   + 
Sbjct: 8   LENVQPNSAASXAGLQAGDRIVXVDGQPLT 37

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           GI+V  V P SP+   G+Q GD I+KVN    + +     +   +  +  + L V  RR 
Sbjct: 36  GIYVQEVAPNSPSQRGGIQDGDIIVKVNG---RPLVDSSELQEAVLTESPLLLEV--RRG 90

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
           GI V  V P  PA+  G+Q  D I+ V++     
Sbjct: 245 GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS 278

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 60  GSVGIRLTGGNK-VGIFVTAVQPGSPASLQGLQPGDKILKVND 101
            S+G+++T     +G  +  V  G  A+  G+  G  + KV+D
Sbjct: 229 ASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDD 271

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Length = 105

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 68  GGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
               +G  V+  +        GLQ GD  + +N +D+        +   ++   ++ L V
Sbjct: 33  DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92

Query: 128 QNRRD 132
           +  RD
Sbjct: 93  E--RD 95

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           GI+ ++V    PA    ++ GDKI+  +  + +
Sbjct: 2   GIYASSVVENMPAK-GKIEVGDKIISADGKNYQ 33

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 52  RFITFQK--EGSVGIRLTGG-----NKVGIFVTAVQPG--SPASLQGLQPGDKILKVNDM 102
             I+     E   G  +T           + V  V     SP +   + PGD+IL++N  
Sbjct: 17  TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT 76

Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQ 128
            ++ +  EE    +      + L+++
Sbjct: 77  PVRTLRVEEVEDAIKQTSQTLQLLIE 102

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 192 PASPEPQTLR-VQLSKSRK-KDDFGIIL-------GNKIFVKEVTHRLDNNASPGTHQLA 242
                P ++  + +  + + +  F + +          + VKEV     + +    + + 
Sbjct: 8   VQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEV--NRMHISPNNRNAIH 65

Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQES 291
            GD +L+IN  P   + V+E    I  + + L L I  + P P    +S
Sbjct: 66  PGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHD-PVPQRLDQS 113

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           G++V +V P  PA+   L+ GD+I  ++   + 
Sbjct: 6   GVYVMSVLPNMPAA-GRLEAGDRIAAIDGQPIN 37

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G+ +  V  GSPA   GL+PGD IL + +   + +   E V   +  Q Q+ + +  RR 
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGE---QMVQNAEDVYEAVRTQSQLAVQI--RRG 311

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 67  TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI 126
              +  G+ V  V     A   GL  GDKI+ ++ +        + +L      D + + 
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATE-QSVKRILERYIPGDTVTIH 549

Query: 127 VQNRRDEYEHV 137
              RRDE   +
Sbjct: 550 AF-RRDELMTL 559

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           G ++  V P +PA   GL+  D I+ +N   + 
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVV 287

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5 Length = 87

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 68  GGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
               +G  V+  +        GLQ GD  + +N +D+        +   ++   ++ L V
Sbjct: 15  DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 74

Query: 128 QNRRD 132
           +  RD
Sbjct: 75  E--RD 77

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           G++V +V+   PA+   L  GD I +++    K
Sbjct: 8   GVYVMSVKDDVPAA-DVLHAGDLITEIDGNAFK 39

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           G FV+ V PGS ++  G++ GD I  +N   + 
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN 296

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 66  LTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
           +      G+ V +VQ   PA+   L+  D I KV+D ++ 
Sbjct: 51  IPSNVTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIA 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	627
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	100.0
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	100.0
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	100.0
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	100.0
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	100.0
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	100.0
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	100.0
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.94
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.92
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.87
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.87
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.82
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.81
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.8
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.79
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.74
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.71
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.71
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.7
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.65
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.61
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.61
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.57
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.51
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.5
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.46
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.45
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.44
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.43
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.41
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.41
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.4
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.39
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.38
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.38
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.37
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.37
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.37
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.36
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.36
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.36
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.36
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.35
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.35
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.35
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.35
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.34
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.34
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.34
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.34
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.34
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.34
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.34
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.33
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.33
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.33
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.33
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.32
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.32
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.32
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.32
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.32
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.32
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.32
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.32
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.32
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.31
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.31
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.31
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.31
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.31
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.31
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.31
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.31
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.31
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.3
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.3
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.3
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.3
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.29
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.29
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.29
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.29
2ego_A	96	General receptor for phosphoinositides 1- associat	99.29
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.29
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.29
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.28
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.28
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.28
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.28
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.28
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.27
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.27
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.27
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.27
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.27
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.27
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.27
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.27
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.26
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.26
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.26
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.26
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.26
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.26
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.26
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.25
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.25
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.24
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.24
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.24
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.24
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.24
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.24
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.23
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.23
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.23
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.22
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.22
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.22
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.22
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.21
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.21
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.21
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.21
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.21
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.2
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.2
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.2
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.2
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.2
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.2
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.2
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.19
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.19
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.19
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.19
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.19
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.18
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.18
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.17
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.17
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.17
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.16
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.16
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.16
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.15
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.15
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.15
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.15
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.14
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.14
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.14
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.13
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.13
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.11
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.11
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.1
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.1
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.1
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.09
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.09
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.09
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.09
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.08
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.67
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.07
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.07
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.06
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.05
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.04
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.03
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.03
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.02
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	99.01
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.01
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.0
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.0
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.99
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.99
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.99
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.98
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.98
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.98
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.98
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	98.98
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.98
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.97
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.97
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.96
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.96
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.95
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.95
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.95
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.93
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.92
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.92
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.92
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.91
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.89
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.89
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.89
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.88
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.88
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.88
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.88
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.88
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.87
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.87
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.87
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.87
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.86
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.86
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.86
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.86
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.85
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.85
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	98.85
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.85
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.84
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.84
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.84
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.84
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.84
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.83
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.83
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.83
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.82
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.82
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.82
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.82
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.82
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.81
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.81
2ego_A	96	General receptor for phosphoinositides 1- associat	98.81
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.81
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.81
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.81
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.81
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.8
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.8
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.8
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.8
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.79
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.79
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.79
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.79
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.79
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.79
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.79
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.78
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.78
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.78
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.77
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.77
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.77
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.77
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.77
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.77
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.77
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.76
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.76
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.76
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.76
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.76
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.76
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.76
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.75
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.75
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.75
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.74
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.74
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.74
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.74
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.74
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.74
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.74
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.73
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.73
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.72
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.71
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.71
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.71
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.71
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.7
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.7
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.7
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.69
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.69
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.69
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.69
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.69
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.69
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.68
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.68
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.68
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.68
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.67
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.66
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.66
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.66
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.65
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.65
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.65
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.65
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.65
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.64
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.64
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.63
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.63
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.63
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.62
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.62
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.6
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.6
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.6
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.58
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.58
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.58
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.58
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.58
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.57
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.56
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.56
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.56
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.55
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.55
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.54
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.54
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.54
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.51
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.51
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.51
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.5
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.5
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.49
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.49
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.48
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.46
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.46
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.45
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.82
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.44
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.44
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.43
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.42
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.41
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.41
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.4
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.4
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.4
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.38
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.35
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.35
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.33
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.29
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.28
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.28
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.26
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.25
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.23
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.22
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.21
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.18
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.14
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.13
3k50_A	403	Putative S41 protease; structural genomics, joint	98.09
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	97.99
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.97
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	97.94
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.93
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.89
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.88
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.84
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.81
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.79
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	97.78
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	97.75
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.66
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.64
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.54
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.51
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.51
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.48
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.37
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	97.34
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	97.25
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	97.25
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.16
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	97.11
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	97.11
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.07
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.06
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.05
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.0
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	96.96
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	96.95
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	96.92
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	96.8
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	96.78
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	96.77
1awj_A	77	ITK; transferase, regulatory intramolecular comple	96.75
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	96.66
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	96.64
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	96.64
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	96.62
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	96.61
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	96.61
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	96.58
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	96.57
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	96.56
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	96.53
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	96.52
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	96.49
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	96.48
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	96.47
4fgm_A	597	Aminopeptidase N family protein; structural genomi	96.47
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	96.46
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	96.45
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	96.45
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	96.44
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	96.44
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	96.41
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	96.4
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	96.39
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	96.38
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	96.35
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	96.35
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	96.34
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	96.34
1wxb_A	68	Epidermal growth factor receptor pathway substrate	96.32
1i07_A	60	Epidermal growth factor receptor kinase substrate	96.3
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	96.3
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	96.29
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	96.28
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	96.28
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	96.26
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	96.25
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	96.25
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	96.24
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	96.21
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	96.21
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	96.21
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	96.2
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	96.2
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	96.19
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	96.19
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	96.17
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	96.17
3k50_A	403	Putative S41 protease; structural genomics, joint	96.16
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	96.12
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	96.12
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	96.12
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	96.11
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	96.1
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	96.1
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	96.1
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	96.1
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	96.09
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	96.09
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	96.09
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	96.07
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	96.06
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	96.05
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	96.04
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	96.03
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	96.02
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	96.02
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	96.01
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	96.0
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	95.99
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	95.98
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	95.97
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	95.95
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	95.95
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	95.94
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	95.92
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	95.9
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	95.87
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	95.87
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	95.86
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	95.84
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	95.84
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	95.83
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	95.82
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	95.82
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	95.8
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	95.8
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	95.79
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	95.78
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	95.78
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	95.77
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	95.76
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	95.75
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	95.75
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	95.75
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	95.75
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	95.74
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	95.74
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	95.73

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=100.00  E-value=3e-69  Score=622.14  Aligned_cols=521  Identities=20%  Similarity=0.325  Sum_probs=401.1

Q ss_pred             CceEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      +++.+.+.+. ++|||+|.||.       +.|++|..|.+||||+++| |++||+|++|||.++.++++.+++.+++.++
T Consensus        59 ~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g  138 (721)
T 2xkx_A           59 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG  138 (721)
T ss_pred             eEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc
Confidence            5577888776 59999999974       4679999999999999999 9999999999999999999999999999889


Q ss_pred             CeeEEEEEeCCccc---------------ceee---------------------ecCCCCccc-cccCCeeeccCCeecC
Q psy9827         121 DQIHLIVQNRRDEY---------------EHVV---------------------ASQRGDSFH-IKVNDRIMSANGLSLE  163 (627)
Q Consensus       121 ~~V~L~v~r~~~~~---------------~~~v---------------------~~~~~~~~~-l~~~D~i~~vng~~l~  163 (627)
                      ..|.|+|.|.+...               ...+                     .++++...+ |+.||.|++|||..+.
T Consensus       139 ~~v~l~v~R~~~~~~~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~  218 (721)
T 2xkx_A          139 SIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE  218 (721)
T ss_pred             cccceEEEecccccccceeeeeeeecCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCC
Confidence            99999998765321               0111                     111222335 9999999999999999


Q ss_pred             cCChHHHHHHHhhcCCeEEEEEeecccC--------CCC--------------------------C-------CC-----
Q psy9827         164 NVEYGTAVQVLRDSGSTVTLKVRRRIVL--------PAS--------------------------P-------EP-----  197 (627)
Q Consensus       164 ~~~~~~~~~~l~~sg~~v~l~v~r~~~~--------p~~--------------------------~-------~~-----  197 (627)
                      ++++.+++..++..+..+.|.+.|....        |..                          +       .+     
T Consensus       219 ~~~~~~~~~~l~~~~~~v~l~V~R~g~~~~~~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  298 (721)
T 2xkx_A          219 DVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDL  298 (721)
T ss_pred             CCCHHHHHHHHHcCCCeEEEEEEeCCcccccCCCCCCCcccCCCCCcccccCCcccccccccccCCCCCCcccCCccccc
Confidence            9999999999998888889988765211        000                          0       00     


Q ss_pred             --------ccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         198 --------QTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       198 --------~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                              ....|.|.+...+.||.+..+   .|++|..|.+|+   .|++.|.|++||+|++|||+++.++++++++.+
T Consensus       299 ~~~~~~~~~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs---~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~  375 (721)
T 2xkx_A          299 LGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGG---PADLSGELRKGDQILSVNGVDLRNASHEQAAIA  375 (721)
T ss_pred             ccccccccceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCC---hHHhcCCCccCCEEEEECCEECCCCCHHHHHHH
Confidence                    234566776644444444433   589999999873   344444499999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCCCCCCCcCCCCc-c-ccCcCCcC-CCCCCC--CCCCceeeCCCCCCCCCCCccCcCCCCCCCCCC
Q psy9827         267 IDSSKEKLSLTIRREVPRPTAYQESTT-L-PGKENNYM-DPLSTN--YSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRS  341 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~--~~~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~  341 (627)
                      |+..++.++|.|.|+...........+ + .++.+..+ .+.+..  .+.+++||||+|+|   ++..|+.+||..+.|.
T Consensus       376 l~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~vrAl~dy---~~~~d~~~p~~~LsF~  452 (721)
T 2xkx_A          376 LKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDY---DKTKDCGFLSQALSFR  452 (721)
T ss_pred             HHhcCCeEEEEEEeCchhhhhhhhhhhhhhhhcccccccCCccccccccccceeEEEeecc---CcCCCCCCcccccccc
Confidence            999989999999987543211100000 0 00111111 112221  23468999999999   7777888887766777


Q ss_pred             CCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHHHHhhcccccccccccccccchhccccCccCCC
Q psy9827         342 RNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSK  421 (627)
Q Consensus       342 ~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~  421 (627)
                      +||||+| ++++|.    .||+|++.+..++..+.|+|||+.++|++...+..           ...| .+++      .
T Consensus       453 ~GDil~v-~~~~~~----~WW~a~~~~~~~~~~~~G~iPs~~~~e~~~~~~~~-----------~~~~-~~~~------~  509 (721)
T 2xkx_A          453 FGDVLHV-IDAGDE----EWWQARRVHSDSETDDIGFIPSKRRVERREWSRLK-----------AKDW-GSSS------G  509 (721)
T ss_pred             CCCEEEE-eecCCC----CeEEEEECCCCCccCccceeecHHHHHHHHhhhcc-----------cccc-cCcc------h
Confidence            9999999 676664    89999998766656789999999999987543211           0112 1110      0


Q ss_pred             CCCccCcccccccCCCCCccccchhhccCCCCCceEEEeCccHHHHHHHHhhhCCCCcccCCC---------------CC
Q psy9827         422 SLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRK---------------FN  486 (627)
Q Consensus       422 ~~~~~~~d~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~k~~l~~~Ll~~~p~~f~~~~~---------------~~  486 (627)
                          ...+       .+.+++||+|.++++.+.|||||+||+|++|+++|++++|+.|..+++               +|
T Consensus       510 ----~~~~-------~~~~~~Ye~V~~~~~~~~r~vvl~GP~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~  578 (721)
T 2xkx_A          510 ----SQGR-------EDSVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH  578 (721)
T ss_pred             ----hhcc-------cccCCCceeeecccCCCCCEEEEECCCHHHHHHHHHHhCccceeecccccccCCCCCccCCceeE
Confidence                0011       146789999999999999999999999999999999999988876332               17


Q ss_pred             CC-CHHHHHHHHhccccc-----CCcee-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-
Q psy9827         487 FI-LWATIKDTAMYQSSK-----EPGMY-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-  552 (627)
Q Consensus       487 Fv-s~e~f~~~i~~~~~~-----~~~~Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-  552 (627)
                      || |+++|+++++.|+|+     .||||     +|++++++||+|||||+ +.+ .++..+++|+  +|||+|||+++| 
T Consensus       579 Fv~s~~~f~~~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~--~ifi~pps~~~L~  656 (721)
T 2xkx_A          579 FVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPI--AIFIRPRSLENVL  656 (721)
T ss_pred             EecCHHHHHHHHhcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCE--EEEEeCCcHHHHH
Confidence            99 999999999877654     59999     79999999999999999 555 4444589999  999999996554 


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECCCHHHHHHHHHHHHHhhCCCCeeEeCCC
Q psy9827         553 ---KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETK  612 (627)
Q Consensus       553 ---~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~l~~~i~~~~~~~~Wvp~~~  612 (627)
                         +|.++++++++++++.++|++|.++||+||+|||+++||++|+++|.+++++|||||++.
T Consensus       657 ~l~~R~t~~~~~~rl~~a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~~~~Wvp~~~  719 (721)
T 2xkx_A          657 EINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARE  719 (721)
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHhccccCcEEEECcCHHHHHHHHHHHHHhccCCcEEeeccc
Confidence               677888899999999889999999999999999999999999999999999999999874

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.6e-57  Score=491.81  Aligned_cols=368  Identities=34%  Similarity=0.556  Sum_probs=262.0

Q ss_pred             ceEEEeccCCceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeeEEEEE
Q psy9827          51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQIHLIVQ  128 (627)
Q Consensus        51 ~r~v~l~k~g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~V~L~v~  128 (627)
                      +|.|.+.+.++|||++.++++.|++|..|.+||||+++||++||+|++|||.++.++++.+++..++.  +++.|+|+|.
T Consensus         2 ~r~V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~   81 (468)
T 3shw_A            2 MKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ   81 (468)
T ss_dssp             EEEEEEECCSSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEE
T ss_pred             ceEEEEecCCccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEE
Confidence            57888999889999999998899999999999999999999999999999999999999999999886  7889999888


Q ss_pred             eCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecC
Q psy9827         129 NRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSR  208 (627)
Q Consensus       129 r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~  208 (627)
                      |++..+..                                                                        
T Consensus        82 r~g~~~~~------------------------------------------------------------------------   89 (468)
T 3shw_A           82 KKKDVYRR------------------------------------------------------------------------   89 (468)
T ss_dssp             ECHHHHHH------------------------------------------------------------------------
T ss_pred             ECCccchh------------------------------------------------------------------------
Confidence            64321110                                                                        


Q ss_pred             CCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCCCCCc
Q psy9827         209 KKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY  288 (627)
Q Consensus       209 ~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~~~~~  288 (627)
                                                                               ++..              .    
T Consensus        90 ---------------------------------------------------------~~~~--------------~----   94 (468)
T 3shw_A           90 ---------------------------------------------------------IVES--------------D----   94 (468)
T ss_dssp             ---------------------------------------------------------HHHH--------------T----
T ss_pred             ---------------------------------------------------------hhcc--------------c----
Confidence                                                                     0000              0    


Q ss_pred             CCCCccccCcCCcCCCCCCCCCCCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccC---CCCCCCCcCcccc
Q psy9827         289 QESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQ---LDRPVSPINNSMD  365 (627)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~---~d~~~~~~wwqa~  365 (627)
                                           ..+++||||+|+|   ++.+    + .+++|.+|||||| +++   +|.    .||||+
T Consensus        95 ---------------------~g~s~yVralfdy---~~~~----~-~~LsF~~GDIL~V-~d~~~~~d~----~wW~A~  140 (468)
T 3shw_A           95 ---------------------VGDSFYIRTHFEY---EKES----P-YGLSFNKGEVFRV-VDTLYNGKL----GSWLAI  140 (468)
T ss_dssp             ---------------------CCCCEEEEECSCB---CCSS----T-TBCCBCTTCEEEE-EESSGGGCT----TEEEEE
T ss_pred             ---------------------cccccccccccCc---CCCC----C-CCceEccCCEEEE-eecccCCCC----CeEEEE
Confidence                                 0136899999999   4332    2 3566779999999 665   443    899999


Q ss_pred             ccCCCCccceeeeccChhhHHHHHHHhhcccccccccccccccchhcccc-CccCCCCCCccCcccccccCCCCCccccc
Q psy9827         366 SLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRN-SHRRSKSLSKDHWDDVVFGDSISKFPAYE  444 (627)
Q Consensus       366 ~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~r~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~Ye  444 (627)
                      +++.++++.++|+|||+.++|+++..+.... +  ...+.+++||+.+.+ +++|.++.++....+   ....+.+++||
T Consensus       141 ~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~-~--~~~~~~~~f~~~~~~r~~kk~~~~~~~~~~~---~~~~~~~~~YE  214 (468)
T 3shw_A          141 RIGKNHKEVERGIIPNKNRAEQLASVQYTLP-K--TAGGDRADFWRFRGLRSSKRNLRKSREDLSA---QPVQTKFPAYE  214 (468)
T ss_dssp             EECTTSCEEEEEEEECHHHHHHHHHHHHC-------------------------------------------CCCCCSEE
T ss_pred             EcCCCCcccccceecCHHHHHHHHHHhhhhh-c--cccccccchhhhccccccccccccchhhccc---ccccccCCCcc
Confidence            9988776678999999999999876554211 1  122346777654321 111111111111100   11125689999


Q ss_pred             hhhccCCCCCceEEEeCccHHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCC-cee-----hHHhHHhCCC
Q psy9827         445 RVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEP-GMY-----QGKDSMYQGK  518 (627)
Q Consensus       445 ~V~~~~~~~~RpvVl~Gp~k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~-~~Y-----~V~~v~~~gk  518 (627)
                      +|++++++++|||||+||+...|+++|++++|++|.++.     |+..      .||. +| +||     +|++++++||
T Consensus       215 eV~~~~~~~~r~iVlsGPsG~Gl~~~Ll~~~p~~f~s~~-----TRpR------~gE~-dG~~Y~FTs~~~V~~vl~~Gk  282 (468)
T 3shw_A          215 RVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAK-----SEPR------DAGT-DQRSSGIIRLHTIKQIIDQDK  282 (468)
T ss_dssp             EEEEECCSSCCCEEEESTTHHHHHHHHHHHCTTTEEECC-----CBC-----------------CBCCHHHHHHHHTTTC
T ss_pred             eeEcccCCCCCEEEEECCCHHHHHHHHHHhCCCceeeec-----CCCC------Cccc-ccccCCcccHHHHHHHHHCCC
Confidence            999999999999999999966699999999999999853     3210      1222 22 233     9999999999


Q ss_pred             cEEEecC-Cce-eccccCCCCceeEEEEcCCCcccCC----C---CCHHHHHHHHHHHHHHHHHhcCcccEEEECCCH-H
Q psy9827         519 DSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQGK----D---IKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV-D  588 (627)
Q Consensus       519 ~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~~----~---~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~~l-~  588 (627)
                      ||||||+ +++ .++...++|+  +|||+|||+++|+    |   .+++.++++++++.++|++|.|+||+||+|||+ +
T Consensus       283 ~~iLdId~qg~~~l~~~~~~p~--~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~~~~fD~vIvNddl~d  360 (468)
T 3shw_A          283 HALLDVTPNAVDRLNYAQWYPI--VVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMND  360 (468)
T ss_dssp             EEEECCCHHHHHHHHHTTCCCE--EEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHGGGCSEEEECBTTBC
T ss_pred             eEEEEeCHHHHHHHHhcCCCCE--EEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhhccCCEEEECCCcHH
Confidence            9999999 555 4455589999  9999999976652    1   234458999999999999999999999999999 5


Q ss_pred             HHHHHHHHHHHhhCCCCeeEeCCCCccCccc
Q psy9827         589 VWYRKTRELIEKQQSSPVWISETKSNLDIRE  619 (627)
Q Consensus       589 ~~~~~l~~~i~~~~~~~~Wvp~~~~~~~~~~  619 (627)
                      +||++|+++|.+++++|||||++|+.+.++|
T Consensus       361 ~a~~~L~~ii~~~~~~~~WvP~~~~~~~~~~  391 (468)
T 3shw_A          361 GWYGALKEAIQQQQNQLVWVSEGKADGATSD  391 (468)
T ss_dssp             HHHHHHHHHHHHHHTSCEEEEC---------
T ss_pred             HHHHHHHHHHHHhcCCCEEeCCccccccccc
Confidence            9999999999999999999999999999775

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=100.00  E-value=2.8e-57  Score=484.76  Aligned_cols=365  Identities=34%  Similarity=0.562  Sum_probs=264.5

Q ss_pred             cCCCCceEEEeccCCceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCee
Q psy9827          46 FVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL--SLQDQI  123 (627)
Q Consensus        46 ~~~~~~r~v~l~k~g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~--~~g~~V  123 (627)
                      ...+..+.+.+.+.++|||++.++++.|++|..|.+||||+++||++||+|++|||.++.++++.+++..++  ..|+.|
T Consensus         5 ~~~~~~~~v~~~k~~~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v   84 (391)
T 3tsz_A            5 ILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV   84 (391)
T ss_dssp             ----CEEEEEEECCSSCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEE
T ss_pred             ccCCCcEEEEeecCCceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeE
Confidence            345678889999988999999998888999999999999999999999999999999999999999999988  488899


Q ss_pred             EEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEE
Q psy9827         124 HLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQ  203 (627)
Q Consensus       124 ~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~  203 (627)
                      +|+|.|++..+..                                                                   
T Consensus        85 ~l~v~r~~~~~~~-------------------------------------------------------------------   97 (391)
T 3tsz_A           85 TILAQKKKDVYRR-------------------------------------------------------------------   97 (391)
T ss_dssp             EEEEEECHHHHGG-------------------------------------------------------------------
T ss_pred             EEEEeeCCccccc-------------------------------------------------------------------
Confidence            9998864422110                                                                   


Q ss_pred             EeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         204 LSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       204 L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                                                           +             +.                           
T Consensus        98 -------------------------------------~-------------~~---------------------------  100 (391)
T 3tsz_A           98 -------------------------------------I-------------VE---------------------------  100 (391)
T ss_dssp             -------------------------------------G-------------TS---------------------------
T ss_pred             -------------------------------------c-------------cc---------------------------
Confidence                                                 0             00                           


Q ss_pred             CCCCcCCCCccccCcCCcCCCCCCCCCCCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccC---CCCCCCCc
Q psy9827         284 RPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQ---LDRPVSPI  360 (627)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~---~d~~~~~~  360 (627)
                       ..                       ..+++||||+|+|   ++.+ +    .++.|.+||||+| +++   +|.    .
T Consensus       101 -~~-----------------------~~~~~~vral~dy---~~~~-~----~~Lsf~~Gdil~V-~~~~~~~d~----~  143 (391)
T 3tsz_A          101 -SD-----------------------VGDSFYIRTHFEY---EKES-P----YGLSFNKGEVFRV-VDTLYNGKL----G  143 (391)
T ss_dssp             -SC-----------------------CSCCEEEEECSCB---CCSS-T----TBCCBCTTCEEEE-EESSGGGSS----S
T ss_pred             -cc-----------------------ccccccccccccc---CCCC-C----CcceEccCCEEEE-EeccCCCCC----C
Confidence             00                       1246899999999   5432 2    2556779999999 555   343    8


Q ss_pred             CccccccCCCCccceeeeccChhhHHHHHHHhhcccccccccccccccchhccccC-ccCCCCCCccCcccccccCCCCC
Q psy9827         361 NNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNS-HRRSKSLSKDHWDDVVFGDSISK  439 (627)
Q Consensus       361 wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~r~~~-~~~~~~~~~~~~d~~~~~~~~~~  439 (627)
                      ||+|++++.+++..++|+|||+.++|+++..+.....   .....+++||+.|+.+ +++..+.++   ++.......+.
T Consensus       144 wW~a~~~~~~~~~~~~G~IPs~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~~k~~---~~~~~~~~~~~  217 (391)
T 3tsz_A          144 SWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR---EDLSAQPVQTK  217 (391)
T ss_dssp             EEEEEEECGGGCEEEEEEEECHHHHHHHHSSCCC---------------------------------------------C
T ss_pred             eEEEEEeCCCCCcccCCEecCHHHHHHHHHHHhhhcc---cccccccccccccccccccccccccc---ccccccccccc
Confidence            9999999876656689999999999998765442211   1223455666532111 111100011   11111111246


Q ss_pred             ccccchhhccCCCCCceEEEeCccHHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCc-ee-----hHHhH
Q psy9827         440 FPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPG-MY-----QGKDS  513 (627)
Q Consensus       440 ~~~Ye~V~~~~~~~~RpvVl~Gp~k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~-~Y-----~V~~v  513 (627)
                      +++||+|++++|.++|||||+||+.+||+++|++++|++|.++.++-           ..||. +|. ||     +|+++
T Consensus       218 ~~~YE~V~~~~~~~~r~iVlsGPsg~tl~~~L~~~~p~~~~~~tr~p-----------R~gE~-dG~~Y~Fv~~~~V~~~  285 (391)
T 3tsz_A          218 FPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSEP-----------RDAGT-DQRSSGIIRLHTIKQI  285 (391)
T ss_dssp             CCSEEEEEEEECSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCCC-----------CCSSS-CCC--CCCCHHHHHHH
T ss_pred             CCCcceEECcCCCCCCEEEEECCCHHHHHHHHHhhCccccccccCCC-----------CCccc-CCccCCcCcHHHHHHH
Confidence            89999999999999999999999999999999999999999854331           01222 332 22     89999


Q ss_pred             HhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccCC----C---CCHHHHHHHHHHHHHHHHHhcCcccEEEEC
Q psy9827         514 MYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQGK----D---IKKEVKIKLFEQSQKLEKVWSHVFTGTITL  584 (627)
Q Consensus       514 ~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~~----~---~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n  584 (627)
                      +++||||||||| +++ .++...++|+  +|||+|||+++|+    |   .+++.++++++++.++|++|.|+||+||+|
T Consensus       286 ~~~Gk~~iLdId~qg~~~l~~~~~~p~--~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~~~~fd~vivN  363 (391)
T 3tsz_A          286 IDQDKHALLDVTPNAVDRLNYAQWYPI--VVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINL  363 (391)
T ss_dssp             HTTTCEEEECCCHHHHHHHHHTTCCCE--EEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHGGGCSEEEEC
T ss_pred             HHcCCEEEEEeCHHHHHHHHhCCCCCE--EEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccccCcEEEEC
Confidence            999999999999 554 4455589999  9999999976652    1   234458999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHHHhhCCCCeeEeCC
Q psy9827         585 SGVD-VWYRKTRELIEKQQSSPVWISET  611 (627)
Q Consensus       585 ~~l~-~~~~~l~~~i~~~~~~~~Wvp~~  611 (627)
                      ||++ .||++|+++|.+++++|||||+.
T Consensus       364 d~l~~~a~~~l~~ii~~~~~~~~Wvp~~  391 (391)
T 3tsz_A          364 NSMNDGWYGALKEAIQQQQNQLVWVSEG  391 (391)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHSEEEEEC-
T ss_pred             CCcHHHHHHHHHHHHHHhcCCCeeccCC
Confidence            9998 79999999999999999999973

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=100.00  E-value=2.7e-56  Score=457.40  Aligned_cols=254  Identities=20%  Similarity=0.326  Sum_probs=197.2

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHHHH
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATA  391 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~  391 (627)
                      .++||||+|+|   +|.+|+.+||+.+.|.+|||||| ++++|.    +||||++++++++..++|+|||+.++|++..+
T Consensus         4 ~s~yvRa~fdY---~~~~D~~~P~~gL~F~~gDiL~V-~~~~d~----~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~   75 (292)
T 3tvt_A            4 RSLYVRALFDY---DPNRDDGLPSRGLPFKHGDILHV-TNASDD----EWWQARRVLGDNEDEQIGIVPSKRRWERKMRA   75 (292)
T ss_dssp             -CCEEEECSCB---CC---------CCCBCTTCEEEE-EECCSS----SEEEECCCCC--------EEECHHHHHHHHHC
T ss_pred             ceEEEEEeccC---CCCCCCCCCCCcCCcCCCCEEEE-eecCCC----CeEEEEEeCCCCCccceeEEeChHHHHHHHHH
Confidence            47999999999   88899999999666779999999 888876    99999999888777889999999999987532


Q ss_pred             hhcccccccccccccccchhccccCccCCCCCCccCcccccccCCCCCccccchhhccCCCCCceEEEeCccHHHHHHHH
Q psy9827         392 QFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKL  471 (627)
Q Consensus       392 ~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~k~~l~~~L  471 (627)
                      +.+.                        .    +.          .+.+++||+|++++++++|||||+||+|++|+++|
T Consensus        76 ~~~~------------------------~----~~----------~~~~~~YE~V~~~~~~~~RpvVl~Gp~K~tl~~~L  117 (292)
T 3tvt_A           76 RDRS------------------------V----KS----------EENVLSYEAVQRLSINYTRPVIILGPLKDRINDDL  117 (292)
T ss_dssp             ------------------------------------------------CCCEEEEEEEECSSCCCEEEESTTHHHHHHHH
T ss_pred             hhcc------------------------c----cc----------cccccchheEEeccCCCCCeEEEeCCCHHHHHHHH
Confidence            2100                        0    00          03467999999999999999999999999999999


Q ss_pred             hhhCCCCcccCCCC---------------CCC-CHHHHHHHHhccccc-----CCcee-----hHHhHHhCCCcEEEecC
Q psy9827         472 LKDFPDKFSAPRKF---------------NFI-LWATIKDTAMYQSSK-----EPGMY-----QGKDSMYQGKDSMYQGK  525 (627)
Q Consensus       472 l~~~p~~f~~~~~~---------------~Fv-s~e~f~~~i~~~~~~-----~~~~Y-----~V~~v~~~gk~ciLdi~  525 (627)
                      ++++|+.|..++++               ||| ++|+|+++++.|+|+     .||+|     +|++++++||+||||||
T Consensus       118 l~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid  197 (292)
T 3tvt_A          118 ISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVS  197 (292)
T ss_dssp             HHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCC
T ss_pred             HHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEecc
Confidence            99999999874322               798 899999999877643     59999     99999999999999999


Q ss_pred             -Cce-eccccCCCCceeEEEEcCCCcccC----CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECCCHHHHHHHHHHHHH
Q psy9827         526 -ESM-YQGKDSMYQGKDSMYQGKDSMYQG----KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIE  599 (627)
Q Consensus       526 -~~l-~~~~~~~~P~~~vIFI~ppsl~~~----~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~l~~~i~  599 (627)
                       +++ .++...++|+  +|||+|||++++    ++.++++.+++.+++.++|++|+|+||+||+|||+++||++|+++|.
T Consensus       198 ~qg~~~lk~~~~~pi--~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~e~e~~~~fD~vIvNddle~a~~~l~~iI~  275 (292)
T 3tvt_A          198 GNAIKRLQVAQLYPV--AVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIW  275 (292)
T ss_dssp             THHHHHHHHTTCCCE--EEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHHHHHHTTTCSEEECCSSHHHHHHHHHHHHH
T ss_pred             chhhhhcccccccce--EEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHHHHhhhhhCCEEEECcCHHHHHHHHHHHHH
Confidence             554 4455688999  999999996644    33344448999999999999999999999999999999999999999


Q ss_pred             hhCCCCeeEeCCCC
Q psy9827         600 KQQSSPVWISETKS  613 (627)
Q Consensus       600 ~~~~~~~Wvp~~~~  613 (627)
                      +++.+++|||+...
T Consensus       276 ~e~~~~~WVP~~~~  289 (292)
T 3tvt_A          276 SQSGPTIWVPSKES  289 (292)
T ss_dssp             HHTCSEEEEEC---
T ss_pred             HhhCCCeEecCccc
Confidence            99999999998754

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.5e-52  Score=423.77  Aligned_cols=279  Identities=26%  Similarity=0.401  Sum_probs=191.9

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCC-----CCCcCccccccCCCCccceeeeccChhhHH
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRP-----VSPINNSMDSLGRNNQEVQKGIIPNKARAE  386 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~-----~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e  386 (627)
                      +++||||+|+|.|   .     +..+++|++|||||| +++.|..     ...-||+|++++.++.+.++|+|||+.++|
T Consensus         3 dsfyVRalfdy~~---~-----~~~eL~F~kGDil~V-~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            3 DSFYIRTHFELEP---S-----PPSGLGFTRGDVFHV-LDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             CCEEEEECSCBCC---C-----SSSBCCBCTTCEEEE-EEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             ccEEEEEecCcCC---C-----CcccCCCccCCEEEE-ccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            6899999999933   2     234677889999999 5555431     012399999998888778999999999999


Q ss_pred             HHHHHhhcccc-----cccccccccccchhccccCccCCCCCCccCcccccccCCCCCccccchhhccCCCCCceEEEeC
Q psy9827         387 ELATAQFNATK-----KELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFG  461 (627)
Q Consensus       387 ~~~~~~~~~~~-----~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~G  461 (627)
                      +++..+.....     .+..+++.|++||++|++++ +.|...+...+++++......+++||+|++++++++|||||+|
T Consensus        74 q~~~~~~~~~~~~~~~~~~~~~~~r~~f~~~~~~r~-~~k~~~~~~~~d~~~~~~~~~~~~YE~V~~~~~~~~RPvVl~G  152 (308)
T 3kfv_A           74 QLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRR-GAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILG  152 (308)
T ss_dssp             HHHHHHHHHCC------------------------------------CCCHHHHHHHTCCSEEEEEEEECSSCCCEEEES
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhccccc-cccccccccccccccccccCCCcCchheeccccCCCCeEEEeC
Confidence            98765542111     12234557889998764321 1121222233443321112467999999999999999999999


Q ss_pred             ccHHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCcee-hHHhHHhCCCcEEEecC-Cce-eccccCCCCc
Q psy9827         462 PVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMY-QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQG  538 (627)
Q Consensus       462 p~k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~~Y-~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~  538 (627)
                      |.|++|+++|++++|++|++|++   ++++     +..++|+   -. +|++++++||+|||||| +++ .++...++|+
T Consensus       153 P~k~~l~~~L~~~~P~~F~~~v~---~~r~-----i~~~~fi---s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi  221 (308)
T 3kfv_A          153 PVADIAMQKLTAEMPDQFEIAET---VSRT-----DSPSKII---KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPI  221 (308)
T ss_dssp             TTHHHHHHHHHHHCTTTEEECCC---C-------------CC---CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCE
T ss_pred             ccHHHHHHHHHHhCccccccccc---cccc-----ccCCCee---cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCE
Confidence            99999999999999999999987   2332     4444443   12 99999999999999999 554 4445589999


Q ss_pred             eeEEEEcCCCcccC----CC---CCHHHHHHHHHHHHHHHHHhcCcccEEE-ECCCHHHHHHHHHHHHHhhCCCCeeEeC
Q psy9827         539 KDSMYQGKDSMYQG----KD---IKKEVKIKLFEQSQKLEKVWSHVFTGTI-TLSGVDVWYRKTRELIEKQQSSPVWISE  610 (627)
Q Consensus       539 ~~vIFI~ppsl~~~----~~---~~e~~~~~~~~~~~~~e~~~~~~fd~vi-~n~~l~~~~~~l~~~i~~~~~~~~Wvp~  610 (627)
                        +|||+|||+++|    +|   .+++.++++++++.++|++|+++||+|| +|||+++||++|+++|.+++++|||||+
T Consensus       222 --~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~~~~~FD~vI~VNDdle~A~~~L~~iI~~~~~epqWvp~  299 (308)
T 3kfv_A          222 --VVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAE  299 (308)
T ss_dssp             --EEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHGGGCSEEEEECSSSTHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             --EEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhhccCcEEEEcCCCHHHHHHHHHHHHHHhcCCCeEeeh
Confidence              999999997665    22   2344588899998899999999999999 9999999999999999999999999999


Q ss_pred             CCC
Q psy9827         611 TKS  613 (627)
Q Consensus       611 ~~~  613 (627)
                      ++.
T Consensus       300 ~~~  302 (308)
T 3kfv_A          300 DQL  302 (308)
T ss_dssp             ---
T ss_pred             hhh
Confidence            874

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=100.00  E-value=1.3e-45  Score=380.29  Aligned_cols=261  Identities=20%  Similarity=0.313  Sum_probs=214.1

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHHHHh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQ  392 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~  392 (627)
                      ++||||+|+|   ++.+|+.+|+.++.|.+||||+| +++.|.    .||+|+..+.+++..+.|+|||+.++|++...+
T Consensus         1 s~~vrAlydy---~~~~~~~~p~~eLsf~~GDil~V-~~~~d~----~WW~a~~~~~~~~~~~~G~iPsny~~e~~~~~~   72 (295)
T 1kjw_A            1 GFYIRALFDY---DKTKDCGFLSQALSFRFGDVLHV-IDAGDE----EWWQARRVHSDSETDDIGFIPSKRRVERREWSR   72 (295)
T ss_dssp             CEEEEESSCB---CHHHHHCCCSSBCCBCTTCEEEE-EECCSS----SEEEEEECCSSCCCSCCEEEECHHHHHHHHHTS
T ss_pred             CEEEEEeecc---CCCCCCCCCCcCCcCCCCCEEEE-EEeCCC----CeEEEEECCCCCccCceeEeecHHHHHHHHHhh
Confidence            4799999999   77777778888888889999999 666654    899999887655446899999999999875432


Q ss_pred             hcccccccccccccccchhccccCccCCCCCCccCcccccccCCCCCccccchhhccCCCCCceEEEeCccHHHHHHHHh
Q psy9827         393 FNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLL  472 (627)
Q Consensus       393 ~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~k~~l~~~Ll  472 (627)
                      .+           +..|.     +  +++    ...       ....+++||+|.++++.+.|||||+||+|++|+++|+
T Consensus        73 ~~-----------~~~~~-----~--~~~----~~~-------~~~~~~~Ye~V~~~~~~~~r~ivl~GPgK~tl~~~L~  123 (295)
T 1kjw_A           73 LK-----------AKDWG-----S--SSG----SQG-------REDSVLSYETVTQMEVHYARPIIILGPTKDRANDDLL  123 (295)
T ss_dssp             CC--------------CC-----S--CCS----SCC-------CCCCCCCEEEEEEEECCSCCCEEEESTTHHHHHHHHH
T ss_pred             hc-----------ccccC-----c--ccc----ccc-------ccCCCCCcceeeeecCCCCCEEEEECCCHHHHHHHHH
Confidence            10           11111     0  000    001       1145789999999999999999999999999999999


Q ss_pred             hhCCCCcccCCC--------C-------CCC-CHHHHHHHHhccccc-----CCcee-----hHHhHHhCCCcEEEecC-
Q psy9827         473 KDFPDKFSAPRK--------F-------NFI-LWATIKDTAMYQSSK-----EPGMY-----QGKDSMYQGKDSMYQGK-  525 (627)
Q Consensus       473 ~~~p~~f~~~~~--------~-------~Fv-s~e~f~~~i~~~~~~-----~~~~Y-----~V~~v~~~gk~ciLdi~-  525 (627)
                      +.+|+.|..+++        +       ||| |+++|+++++.|+|+     .||+|     +|++++++|++|||||+ 
T Consensus       124 ~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~  203 (295)
T 1kjw_A          124 SEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSA  203 (295)
T ss_dssp             HHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCT
T ss_pred             hhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCH
Confidence            999988876332        1       799 999999999877654     59999     79999999999999999 


Q ss_pred             Cce-eccccCCCCceeEEEEcCCCcccC----CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECCCHHHHHHHHHHHHHh
Q psy9827         526 ESM-YQGKDSMYQGKDSMYQGKDSMYQG----KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEK  600 (627)
Q Consensus       526 ~~l-~~~~~~~~P~~~vIFI~ppsl~~~----~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~l~~~i~~  600 (627)
                      +.+ .++..+++|+  +|||+|||++++    +|.++++++++++++.++|+++.++||++|+|||+++|+++|+++|..
T Consensus       204 ~g~~~l~~~~~~pi--~IfI~pps~~~L~~L~~R~t~~~i~~rl~~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii~~  281 (295)
T 1kjw_A          204 NAVRRLQAAHLHPI--AIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIED  281 (295)
T ss_dssp             THHHHHHHTTCCCE--EEEECCSSHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCe--EEEEECCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccCeEEEECcCHHHHHHHHHHHHHh
Confidence            665 4444578999  999999996554    678888899999999889999999999999999999999999999999


Q ss_pred             hCCCCeeEeCCC
Q psy9827         601 QQSSPVWISETK  612 (627)
Q Consensus       601 ~~~~~~Wvp~~~  612 (627)
                      ++.+|||||++.
T Consensus       282 ~~~~~~Wvp~~~  293 (295)
T 1kjw_A          282 LSGPYIWVPARE  293 (295)
T ss_dssp             HSCSEEEEECSC
T ss_pred             ccCCCEEeeCCC
Confidence            999999999874

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=100.00  E-value=1.6e-36  Score=311.05  Aligned_cols=245  Identities=16%  Similarity=0.115  Sum_probs=159.7

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCC--CCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHH
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRS--RNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEEL  388 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~--~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~  388 (627)
                      ...+||||+|+|   ++..|+.+||+++||+  +||||+| ++++|.    +||||++++..|   .+|+|||+.++|++
T Consensus        36 ~~~~~vrAlfdY---~~~~d~d~P~~e~~LsF~~GDiL~V-~~~~d~----~WWqar~~~~~g---~~GlIPS~~~~E~~  104 (337)
T 4dey_A           36 PVAFAVRTNVSY---SAAHEDDVPVPGMAISFEAKDFLHV-KEKFNN----DWWIGRLVKEGC---EIGFIPSPVKLENM  104 (337)
T ss_dssp             CCCEEEEESSCB---CCCGGGCCSSTTCBCCBCTTCEEEE-EEECSS----SEEEEEESSTTC---CCEEEECHHHHHHH
T ss_pred             CccEEEEEcccc---CCCCCCCCCcccccccccCCCEEEE-EecCCC----CeEEEEECCCCC---CccEecCHHHHHHH
Confidence            357899999999   7888999999998877  9999999 777775    999999987554   58999999999998


Q ss_pred             HHHhhcccccccccccccccchhccccCccCCCCCCccCcccccccCCCCCccccchhhccCCCCCceEEEeCccH----
Q psy9827         389 ATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVA----  464 (627)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~k----  464 (627)
                      +..+.+..+        .+.|-.   +++++..+ .+.           +.+++||.|-     ..|||||+||+.    
T Consensus       105 ~~~~~~~~~--------~~~~~~---~~~~~~~~-~k~-----------~~~~~Ye~vp-----~~RPvvlvGP~~~g~~  156 (337)
T 4dey_A          105 RLQHEQRAK--------EFKLHS---KEKRMPFF-KKT-----------EHTPPYDVVP-----SMRPVVLVGPSLKGYE  156 (337)
T ss_dssp             HHHHHHHCC------------------------------------------CCSEEEEC-----SSCCEEEECSSCTTSH
T ss_pred             HHhhhhccc--------cCCCCc---cccccccc-ccC-----------CCCCCccccC-----CCCceEEECCccccch
Confidence            765432110        111211   11111111 111           3568999993     569999999992    


Q ss_pred             --HHHHHHHhhhCCCCcccC------CCC----------CCCCHHHHHHHHhcccccCCcee-------hHHhHHhCCCc
Q psy9827         465 --DLARDKLLKDFPDKFSAP------RKF----------NFILWATIKDTAMYQSSKEPGMY-------QGKDSMYQGKD  519 (627)
Q Consensus       465 --~~l~~~Ll~~~p~~f~~~------~~~----------~Fvs~e~f~~~i~~~~~~~~~~Y-------~V~~v~~~gk~  519 (627)
                        +.+.++|+...|++|..+      .++          +|++++.|+..+..     +.++       .|.+++++||+
T Consensus       157 ~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~-----~~~~ev~seVe~i~~v~~~Gk~  231 (337)
T 4dey_A          157 VTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTR-----SSLAEVQSEIERIFELARTLQL  231 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------C-----CCHHHHHHHHHHHHHHTTTCCE
T ss_pred             hHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccc-----cchHHHHhHHHHHHHHHhCCCE
Confidence              456666665555555543      322          46667777765432     2333       44456668999


Q ss_pred             EEEecC-C-ce-eccccCCCCceeEEEEcCCCcccC-----CCCCHHH--HHHHHHHHHHHHHHhcCcccEEEECCCHHH
Q psy9827         520 SMYQGK-E-SM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDIKKEV--KIKLFEQSQKLEKVWSHVFTGTITLSGVDV  589 (627)
Q Consensus       520 ciLdi~-~-~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~~e~~--~~~~~~~~~~~e~~~~~~fd~vi~n~~l~~  589 (627)
                      |||||| + .. ..+...++|+  +|||+|||+++|     .|+++.+  +++.+++++++.+.|.++||+||+|||+++
T Consensus       232 vILDIDvQnGa~qlk~~~~~~i--~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~~~~~~~FDyvIVNDdLe~  309 (337)
T 4dey_A          232 VVLDADTINHPAQLSKTSLAPI--VVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLED  309 (337)
T ss_dssp             EEEEETTCCSGGGTTTSSCCCE--EEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHHSCGGGCSEEECCSSHHH
T ss_pred             EEEEeCcHHHHHHHHhcCCCCE--EEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhCcccCCEEEECCCHHH
Confidence            999999 6 66 5554556677  999999997766     5665431  344444444434456899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy9827         590 WYRKTRELIEKQ  601 (627)
Q Consensus       590 ~~~~l~~~i~~~  601 (627)
                      ||.+|+++|...
T Consensus       310 A~~~L~~iI~~~  321 (337)
T 4dey_A          310 ACEHLADYLEAY  321 (337)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.94  E-value=3.2e-26  Score=221.20  Aligned_cols=152  Identities=19%  Similarity=0.276  Sum_probs=126.4

Q ss_pred             CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CC-------CCCCCHHHHHHHHhccccc-----CCce
Q psy9827         451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RK-------FNFILWATIKDTAMYQSSK-----EPGM  507 (627)
Q Consensus       451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~-------~~Fvs~e~f~~~i~~~~~~-----~~~~  507 (627)
                      +...++|||+||+   |+||.++|+..+|+.|..+        ++       .+|++.++|++++..++|+     .||+
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~   95 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNM   95 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhcee
Confidence            4467999999999   9999999999999766542        21       2699999999998766543     4899


Q ss_pred             e-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccCCCCCHHHHHHHHHHHHHHHHHhcCcccE
Q psy9827         508 Y-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTG  580 (627)
Q Consensus       508 Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~  580 (627)
                      |     +|++++++|++|||||| +.+ .+|.....|+  +|||+|||++   +.+|+ .+++.+++++++.+|.++||+
T Consensus        96 YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~--~Ifi~Pps~~---~~~e~-~~~i~~r~~~~~~~~~~~fd~  169 (197)
T 3ney_A           96 FGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPF--IVFIAPTDQG---TQTEA-LQQLQKDSEAIRSQYAHYFDL  169 (197)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEE--EEEEEECCBS---SCCHH-HHHHHHHHHHHHHHHGGGCSE
T ss_pred             cccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCce--EEEEeCCCcc---ccchH-HHHHHHHHHHHHHhhccCCCE
Confidence            9     79999999999999999 666 5554456677  9999999985   44555 666777888888889999999


Q ss_pred             EEECCCHHHHHHHHHHHHHhhCCCCeeE
Q psy9827         581 TITLSGVDVWYRKTRELIEKQQSSPVWI  608 (627)
Q Consensus       581 vi~n~~l~~~~~~l~~~i~~~~~~~~Wv  608 (627)
                      ||+|||+++|+++|+++|.+++++||||
T Consensus       170 vivNd~l~~a~~~l~~ii~~~~~~pqWv  197 (197)
T 3ney_A          170 SLVNNGVDETLKKLQEAFDQACSSPQWV  197 (197)
T ss_dssp             EEEESCHHHHHHHHHHHHHHCCCCCC--
T ss_pred             EEECCCHHHHHHHHHHHHHHccCCCCCC
Confidence            9999999999999999999999999998

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.92  E-value=2.1e-25  Score=213.89  Aligned_cols=146  Identities=18%  Similarity=0.230  Sum_probs=116.6

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CCC-------CCCCHHHHHHHHhccccc-----CCcee--
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RKF-------NFILWATIKDTAMYQSSK-----EPGMY--  508 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~~-------~Fvs~e~f~~~i~~~~~~-----~~~~Y--  508 (627)
                      .|||||+|||   |+||+++|++++|+.|..+        +++       ||||+++|+++++.|+|+     .||+|  
T Consensus         1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt   80 (186)
T 1ex7_A            1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS   80 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeee
Confidence            3999999999   9999999999999987652        221       799999999999877654     59999  


Q ss_pred             ---hHHhHHhCCCcEEEecC-Cce--eccccCCCCceeEEEEcCCCcccC-------CCCCHHHHHHHHHHHHH-HHHHh
Q psy9827         509 ---QGKDSMYQGKDSMYQGK-ESM--YQGKDSMYQGKDSMYQGKDSMYQG-------KDIKKEVKIKLFEQSQK-LEKVW  574 (627)
Q Consensus       509 ---~V~~v~~~gk~ciLdi~-~~l--~~~~~~~~P~~~vIFI~ppsl~~~-------~~~~e~~~~~~~~~~~~-~e~~~  574 (627)
                         +|++++++|++||||++ +.+  .++...+.|+  +|||.|||++.|       .+.+++++++++.++.. ++..+
T Consensus        81 ~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~--~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~  158 (186)
T 1ex7_A           81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNAR--FLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE  158 (186)
T ss_dssp             EHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCE--EEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             ecceeeehhhCCCEEEecCCHHHHHHHHHhcccCce--EEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc
Confidence               79999999999999999 444  3312244567  999999996554       33456667777776644 44445


Q ss_pred             cCcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827         575 SHVFTGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       575 ~~~fd~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                      .+.||+||+|||+++|+++|+++|..+
T Consensus       159 ~~~fD~vIvNddle~a~~~l~~iI~ae  185 (186)
T 1ex7_A          159 TGAHDKVIVNDDLDKAYKELKDFIFAE  185 (186)
T ss_dssp             TTCSSEEEECSSHHHHHHHHHHHHTTC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHHhc
Confidence            578999999999999999999999765

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.87  E-value=5e-21  Score=187.14  Aligned_cols=181  Identities=18%  Similarity=0.274  Sum_probs=143.0

Q ss_pred             CCCCccccccCCCCceEEEeccC-CceeEEEEccCC----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCC--CC
Q psy9827          37 GSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGGNK----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG--IT  108 (627)
Q Consensus        37 ~~~d~~~~~~~~~~~r~v~l~k~-g~lG~~i~g~~~----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~--~~  108 (627)
                      ...|||+.++...+...+.+.+. ++|||++.++.+    .|++|..|.++|||+++| |++||+|++|||.++.+  ++
T Consensus         5 ~~~dp~~~~~~~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~   84 (206)
T 3r0h_A            5 KPQEPATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT   84 (206)
T ss_dssp             ---CTTTCCCCTTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSC
T ss_pred             CCCCCCcCCCCCCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccC
Confidence            34688998888888888888886 489999998743    489999999999999999 99999999999999999  99


Q ss_pred             HHHHHHHHhcCCCe-eEEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEee
Q psy9827         109 REEAVLFLLSLQDQ-IHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR  187 (627)
Q Consensus       109 ~~~~~~~l~~~g~~-V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r  187 (627)
                      +.++...++..+.. +.|+|.|......                                                    
T Consensus        85 ~~~~~~~~~~~~~~~v~l~v~R~~~~~~----------------------------------------------------  112 (206)
T 3r0h_A           85 TLKVHQLFHTTYEKAVTLTVFRADPPEL----------------------------------------------------  112 (206)
T ss_dssp             HHHHHHHHHSCCSSEEEEEEECCSSCCE----------------------------------------------------
T ss_pred             HHHHHHHHHhcCCCceEEEEEecccCCC----------------------------------------------------
Confidence            99999999888777 9999997543211                                                    


Q ss_pred             cccCCCCCCCccEEEEEeecC-CCCCeeeeeC-CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         188 RIVLPASPEPQTLRVQLSKSR-KKDDFGIILG-NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       188 ~~~~p~~~~~~~~~V~L~k~~-~~~~~gi~~~-~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                                ..+.+.+.+.. .+.+|.+... .|++|..|.+|    ++|..+| |++||+|++|||+++.+++++++.
T Consensus       113 ----------~~~~v~l~~~~~~~lG~~~~~~~~gv~V~~V~~g----s~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~  178 (206)
T 3r0h_A          113 ----------EKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQG----QYPEIDSKLQRGDIITKFNGDALEGLPFQVCY  178 (206)
T ss_dssp             ----------EEEEEEEECCTTCCCCEEEEECSSCEEEEEECTT----SCHHHHHHCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ----------cEEEEEEecCCCCccCeEEEcCCceEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence                      11223333321 2233433332 58999999887    3444555 999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEeCCC
Q psy9827         265 KLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~~~  283 (627)
                      .+++..++.+.|.|.|...
T Consensus       179 ~~l~~~~~~v~L~V~R~~~  197 (206)
T 3r0h_A          179 ALFKGANGKVSMEVTRPKP  197 (206)
T ss_dssp             HHHHTCCSEEEEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEeCCC
Confidence            9999998999999999644

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.87  E-value=4.9e-21  Score=185.30  Aligned_cols=168  Identities=25%  Similarity=0.409  Sum_probs=133.4

Q ss_pred             CceEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      +.+.+.+.+. ++|||++.++.       ..|++|..|.|+|||+++| |++||+|++|||.++.++++.++...++..+
T Consensus         5 ~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   84 (196)
T 3gsl_A            5 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG   84 (196)
T ss_dssp             EEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4567788776 48999999974       3589999999999999999 9999999999999999999999999999999


Q ss_pred             CeeEEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccE
Q psy9827         121 DQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTL  200 (627)
Q Consensus       121 ~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~  200 (627)
                      ..+.|++.|..+...                                                              ..+
T Consensus        85 ~~v~l~v~r~~~~~~--------------------------------------------------------------~~~  102 (196)
T 3gsl_A           85 SIVRLYVMRRKPPAE--------------------------------------------------------------KVM  102 (196)
T ss_dssp             SEEEEEEEEECCCCE--------------------------------------------------------------EEE
T ss_pred             CcEEEEEEecCCCcc--------------------------------------------------------------ccE
Confidence            999999987542211                                                              112


Q ss_pred             EEEEeecCCCCCeeeee---------CCcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         201 RVQLSKSRKKDDFGIIL---------GNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       201 ~V~L~k~~~~~~~gi~~---------~~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      .+.+.+...+.+|.+..         ..|++|..|.++    ++|..+| |++||+|++|||+++.++++++++.+|+++
T Consensus       103 ~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~g----s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  178 (196)
T 3gsl_A          103 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEG----GAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT  178 (196)
T ss_dssp             EEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSC
T ss_pred             EEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCC----ChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            23333332222333322         147999999887    3444555 999999999999999988899999999998


Q ss_pred             CCeEEEEEEeCCC
Q psy9827         271 KEKLSLTIRREVP  283 (627)
Q Consensus       271 ~~~v~l~V~r~~~  283 (627)
                      ++.+.|+|.|+..
T Consensus       179 ~~~v~l~v~R~~~  191 (196)
T 3gsl_A          179 YDVVYLKVAKPSN  191 (196)
T ss_dssp             CEEEEEEEEEESC
T ss_pred             CCeEEEEEeCCCC
Confidence            8899999999764

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.82  E-value=2e-19  Score=195.50  Aligned_cols=222  Identities=23%  Similarity=0.271  Sum_probs=159.3

Q ss_pred             cccccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEEE----e-----ccCCceeEEEEcc
Q psy9827           7 RFITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----F-----QKEGSVGIRLTGG   69 (627)
Q Consensus         7 ~~~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l-----~k~g~lG~~i~g~   69 (627)
                      .|..+.+++ +++++++       .|++|||| +++....++..+++|++|......    +     ...+.||+++...
T Consensus       171 ~~~~~iq~da~i~~GnSGGPl~n~~G~vvGI~-~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~r~~lGv~~~~~  249 (436)
T 4a8c_A          171 GLENFIQTDASINRGNAGGALLNLNGELIGIN-TAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM  249 (436)
T ss_pred             CccCEEEEcCccCCCCCcCcccCCCCEEEEEE-eeeccCCCCceeEEEEEehHHHHHHHHHHHhccccccccCceEeccc
Confidence            356667776 8888887       47889999 998888878889999999543211    1     1246899998764


Q ss_pred             C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .           ..|++|..|.++|||+++||++||+|++|||.++.++.+..........++.+.|+|.|++......+
T Consensus       250 ~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  329 (436)
T 4a8c_A          250 SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEV  329 (436)
T ss_pred             CHHHHHHhCCCCCcceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            2           36899999999999999999999999999999999988777666656778999999999876655444


Q ss_pred             ecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeee-ee
Q psy9827         139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGI-IL  217 (627)
Q Consensus       139 ~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi-~~  217 (627)
                      .............                          .....+..                ..+..      +.. ..
T Consensus       330 ~l~~~~~~~~~~~--------------------------~~~~gl~~----------------~~~~~------~~~~~~  361 (436)
T 4a8c_A          330 TLDTSTSSSASAE--------------------------MITPALEG----------------ATLSD------GQLKDG  361 (436)
T ss_pred             EECCCCccccccc--------------------------ccccCcee----------------eeccc------ccccCC
Confidence            3221110000000                          00000000                00000      000 01


Q ss_pred             CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       218 ~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      ..|++|..|.++    ++|..+||++||+|++|||+++.  +++++.++++..++.+.|.|.|++.
T Consensus       362 ~~gv~V~~V~~~----spA~~aGL~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~  421 (436)
T 4a8c_A          362 GKGIKIDEVVKG----SPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNE  421 (436)
T ss_pred             CCCEEEEEeCCC----CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence            247899999876    46667789999999999999999  8999999999988899999999754

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.81  E-value=1.3e-18  Score=169.37  Aligned_cols=176  Identities=21%  Similarity=0.304  Sum_probs=132.6

Q ss_pred             CceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhc-CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      ..+.+.+.+.  ++|||++.++.  ..+++|..|.+||||+++ ||++||+|++|||.++.++++.++..+++..++.|.
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   86 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVV   86 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEE
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4566777653  48999999874  357999999999999999 899999999999999999999999988888899999


Q ss_pred             EEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEE
Q psy9827         125 LIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQL  204 (627)
Q Consensus       125 L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L  204 (627)
                      |+|.|+.+...                     .++.                   ...              ...+.|.+
T Consensus        87 l~v~R~~~~~~---------------------~~g~-------------------~~~--------------~~~~~v~l  112 (200)
T 2qt5_A           87 LEVEYELPPVS---------------------IQGS-------------------SVM--------------FRTVEVTL  112 (200)
T ss_dssp             EEEEEECCCCC---------------------CCCS-------------------SEE--------------EEEEEEEE
T ss_pred             EEEeccCCCcc---------------------cCCC-------------------ccc--------------eeEEEEEE
Confidence            99998543210                     0000                   000              01123333


Q ss_pred             eecCCCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         205 SKSRKKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       205 ~k~~~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      .+.....+|.+..+        .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+..+..+.
T Consensus       113 ~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~----s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~  188 (200)
T 2qt5_A          113 HKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPG----GPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAT  188 (200)
T ss_dssp             ECBTTBCSEEEEEECCSSTTTCEEEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEE
T ss_pred             ecCCCCeEEEEECCCCCCccCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            33222233332221        37899999887    3455566 99999999999999999999999999999778999


Q ss_pred             EEEEeCCC
Q psy9827         276 LTIRREVP  283 (627)
Q Consensus       276 l~V~r~~~  283 (627)
                      |.|.|+..
T Consensus       189 l~v~R~~~  196 (200)
T 2qt5_A          189 LLIEYDVS  196 (200)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEECCc
Confidence            99999653

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.80  E-value=2e-18  Score=167.45  Aligned_cols=171  Identities=23%  Similarity=0.394  Sum_probs=130.1

Q ss_pred             CCceEEEeccC--CceeEEEEccC------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      ++.+.+.+.+.  ++|||++.++.      ..+++|..|.+||||+++| |++||+|++|||.++.++++.++..++...
T Consensus         5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   84 (196)
T 1p1d_A            5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   84 (196)
T ss_dssp             CEEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTC
T ss_pred             cEEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45677778775  58999999972      3579999999999999999 999999999999999998888888888755


Q ss_pred             --CCeeEEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCC
Q psy9827         120 --QDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP  197 (627)
Q Consensus       120 --g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~  197 (627)
                        +..+.|++.|+......  +                                                        ..
T Consensus        85 ~~g~~v~l~v~R~~~~~~~--~--------------------------------------------------------~~  106 (196)
T 1p1d_A           85 SITSKVTLEIEFDVAESVI--P--------------------------------------------------------SS  106 (196)
T ss_dssp             CSSSEEEEEEEECSCSCCB--C--------------------------------------------------------CS
T ss_pred             CCCCeEEEEEEecCCCCCC--C--------------------------------------------------------CC
Confidence              78999999886532110  0                                                        00


Q ss_pred             ccEEEEEeecCCCCCeeeee--------CCcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL--------GNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~--------~~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      ....+.+.+. ....+|+.+        ..+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+
T Consensus       107 ~~~~v~l~~~-~~~~lG~~~~~~~~~~~~~gv~V~~V~~~----s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~  181 (196)
T 1p1d_A          107 GTFHVKLPKK-HSVELGITISSPSSRKPGDPLVISDIKKG----SVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQ  181 (196)
T ss_dssp             SCEEEEECCC-SSCCCCCEEECSCSSSTTCCCEEEECCSS----SHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHH
T ss_pred             CcEEEEecCC-CCCCcCEEEECCCCCCCCCCEEEEEECCC----CcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            0111222211 112233333        357999999886    4555667 9999999999999999878999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy9827         269 SSKEKLSLTIRREV  282 (627)
Q Consensus       269 ~~~~~v~l~V~r~~  282 (627)
                      ..+..+.|.|.|++
T Consensus       182 ~~~~~v~l~v~R~~  195 (196)
T 1p1d_A          182 QCEDLVKLKIRKDE  195 (196)
T ss_dssp             HCTTCEEEEEECCC
T ss_pred             hCCCEEEEEEEeCC
Confidence            88889999999865

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.79  E-value=1.5e-19  Score=196.98  Aligned_cols=227  Identities=20%  Similarity=0.255  Sum_probs=153.1

Q ss_pred             cccccccCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCceEEE----e-----ccCCceeEEEEcc
Q psy9827           7 RFITFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----F-----QKEGSVGIRLTGG   69 (627)
Q Consensus         7 ~~~~~~~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l-----~k~g~lG~~i~g~   69 (627)
                      .|..+.+++ ++++++|+       |++|||| +++....++..+++|++|......    +     ...++||++++..
T Consensus       189 ~~~~~iqtda~i~~GnSGGPl~n~~G~VIGI~-t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~r~~lGv~~~~~  267 (451)
T 3pv2_A          189 GVENFIQTDAAINPGNSGGALVNAKGELIGIN-TAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHL  267 (451)
T ss_dssp             ---CCEEESSCCCGGGTTSEEEETTCCEEEEE-ECCC------CCCEEEEEHHHHHHHHHHHHHHSSCCCCBCCEEEEEC
T ss_pred             CcceEEEEecccCCCCCcCcccCCCCeEEEEE-eEeecCCCCccceeeeehhHHHHHHHHHHHhcCCcccccccceEEec
Confidence            355666776 88988884       7788999 998887778889999999443221    1     1246899999864


Q ss_pred             C-----------C-CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827          70 N-----------K-VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV  137 (627)
Q Consensus        70 ~-----------~-~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~  137 (627)
                      .           . .|++|..|.++|||+++||++||+|++|||.++.++.+..........++.|.|+|.|++......
T Consensus       268 ~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~  347 (451)
T 3pv2_A          268 TPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLS  347 (451)
T ss_dssp             CHHHHHHTTSCTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEE
T ss_pred             cHHHHHhcCCCcCCceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            2           2 689999999999999999999999999999999998776666555578899999999987665544


Q ss_pred             eecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeee
Q psy9827         138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL  217 (627)
Q Consensus       138 v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~  217 (627)
                      +........                     ..........-....+....+                  ....  .  ..
T Consensus       348 v~l~~~~~~---------------------~~~~~~~~~~~~G~~l~~~~~------------------~~~~--~--~~  384 (451)
T 3pv2_A          348 AVVTDIKSH---------------------EQKLQSNNPFLYGLALRAFEQ------------------ESPP--H--GN  384 (451)
T ss_dssp             EECBCHHHH---------------------HHHHHHHSTTTTTEEEEEEEE------------------ECTT--S--CE
T ss_pred             EEEccCCcc---------------------ccccccccccccccccccCCh------------------hHhc--c--cC
Confidence            432111000                     000000000000011111000                  0000  0  11


Q ss_pred             CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       218 ~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      ..|++|..|.++    ++|..+||++||+|++|||+++.  +.+++.++|+..++.+.|.|.|++.
T Consensus       385 ~~Gv~V~~V~~g----spA~~aGL~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~  444 (451)
T 3pv2_A          385 VIGVQVVGASEN----SAGWRAGIRPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLRGPG  444 (451)
T ss_dssp             EEEEEEEEECTT----SHHHHHTCCTTCEEEEETTEECC--SHHHHHHHTTSSCSCEEEEEEETTE
T ss_pred             CCceEEEEECCC----CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhcCCCeEEEEEEECCE
Confidence            247899999876    46667789999999999999999  8999999999988899999999754

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.74  E-value=1.1e-16  Score=151.05  Aligned_cols=159  Identities=27%  Similarity=0.452  Sum_probs=122.6

Q ss_pred             CCceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEE
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHL  125 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L  125 (627)
                      +.+|.+.+.+.  ++|||++... +.|++|..|.+||||+++||++||+|++|||.++.++++..+..++. ..++.+.|
T Consensus         3 ~~~r~v~l~k~~~~~lG~~~~~~-~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l   81 (166)
T 1w9e_A            3 MDPREVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM   81 (166)
T ss_dssp             CCCEEEEEECCTTSCCSEEEEEE-TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred             CCCEEEEEEeCCCCcEeEEEEeC-CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEE
Confidence            57899998874  6899999886 46899999999999999999999999999999999999855555554 56679999


Q ss_pred             EEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEe
Q psy9827         126 IVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLS  205 (627)
Q Consensus       126 ~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~  205 (627)
                      ++++......                                                                  +.+.
T Consensus        82 ~vr~~~~~~~------------------------------------------------------------------v~l~   95 (166)
T 1w9e_A           82 TIRDRPFERT------------------------------------------------------------------ITMH   95 (166)
T ss_dssp             EEECCTTCEE------------------------------------------------------------------EEEE
T ss_pred             EEEcCCCcEE------------------------------------------------------------------EEEe
Confidence            9953222111                                                                  1111


Q ss_pred             ecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy9827         206 KSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  280 (627)
Q Consensus       206 k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r  280 (627)
                      +. ....+|+....+ +|..|.++    ++|..++|++||+|++|||.++.++..+++...+.+.+..+.+.+.+
T Consensus        96 ~~-~~~~lG~~~~~g-~v~~v~~~----s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~~  164 (166)
T 1w9e_A           96 KD-STGHVGFIFKNG-KITSIVKD----SSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP  164 (166)
T ss_dssp             CC-TTSCCSEEEETT-EEEEECTT----SHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cC-CCCcEeEEEeCC-EEEEEccC----CHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEEE
Confidence            10 012344444345 78999876    45666789999999999999999999999998899988888888765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.71  E-value=8.8e-17  Score=153.54  Aligned_cols=147  Identities=18%  Similarity=0.274  Sum_probs=114.0

Q ss_pred             CCCceEEEeCcc---HHHHHHHHhhhCCCCcccCC---------------CCCCCCHHHHHHHHhccccc-----CCcee
Q psy9827         452 GFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPR---------------KFNFILWATIKDTAMYQSSK-----EPGMY  508 (627)
Q Consensus       452 ~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~---------------~~~Fvs~e~f~~~i~~~~~~-----~~~~Y  508 (627)
                      ...+.++|+||+   |+||.+.|...+|..|..++               ..+|++.+.|..++..+.+.     .+|+|
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~y   82 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY   82 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccc
Confidence            356899999999   99999999988875443321               12699999999988655432     47888


Q ss_pred             -----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccCCCCCHHHHHHHHHHHHHHHHHhcCcccEE
Q psy9827         509 -----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGT  581 (627)
Q Consensus       509 -----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~v  581 (627)
                           +|++++++|++||||++ +.+ ..+.....++  +|||.|||++.+.+. +++.+++..+..+++..|.++||++
T Consensus        83 g~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~--~ifi~~p~~~~l~~R-~~~i~r~~~~~~~~~~~~~~~~d~~  159 (180)
T 1kgd_A           83 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPF--VVFIAAPTITPGLNE-DESLQRLQKESDILQRTYAHYFDLT  159 (180)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEE--EEEEECCSCCTTSCC-SHHHHHHHHHHHHHHHHHGGGCSEE
T ss_pred             cccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcE--EEEEECCCHHHHHhh-HHHHHHHHHHHHHHHHhhhCCCcEE
Confidence                 69999999999999999 555 4433233456  999999998888443 4447666555556766789999999


Q ss_pred             EECCCHHHHHHHHHHHHHhh
Q psy9827         582 ITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       582 i~n~~l~~~~~~l~~~i~~~  601 (627)
                      |+||++++++++|.++|.+.
T Consensus       160 i~n~~~~~~~~~l~~~i~~~  179 (180)
T 1kgd_A          160 IINNEIDETIRHLEEAVELV  179 (180)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHh
Confidence            99999999999999999764

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.71  E-value=4.4e-19  Score=193.06  Aligned_cols=214  Identities=22%  Similarity=0.319  Sum_probs=98.2

Q ss_pred             ccccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEEE----ec-----cCCceeEEEEccC
Q psy9827           8 FITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGGN   70 (627)
Q Consensus         8 ~~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~~   70 (627)
                      |..+.|++ +++++++       .|++|||| +++....++..+++|++|......    +.     ..+.||+++....
T Consensus       195 ~~~~iqtda~i~~GnSGGpl~n~~G~vvGI~-~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~~~~LGv~~~~~~  273 (448)
T 1ky9_A          195 YENFIQTDAAINRGNAGGALVNLNGELIGIN-TAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELN  273 (448)
T ss_dssp             CCCCEEESCCCTTSCCCSEEECTTSCEEEEE-ECSSTTSCCCSSSEEEEEHHHHHHHHHHHHHHSSCCBCCCCCSCCCTT
T ss_pred             ccCEEEEcCCCCCCCCCCeeECCCCEEEEEE-EEeecCCCCccceeeeeecccchhhHHHHhhhcccceecccccccccc
Confidence            56677777 8899887       58899999 888776667788999988543221    11     2357898876532


Q ss_pred             -----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827          71 -----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        71 -----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~  139 (627)
                                 ..|++|..|.++|||+++||++||+|++|||..+.++.+..........++.|.|+|.|++......+.
T Consensus       274 ~~~a~~lgl~~~~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~  353 (448)
T 1ky9_A          274 SELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLE  353 (448)
T ss_dssp             SHHHHTSCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC
T ss_pred             HHHHHHhCCCCCCceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence                       258999999999999999999999999999999999865544333335789999999987654333222


Q ss_pred             cCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeee--
Q psy9827         140 SQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL--  217 (627)
Q Consensus       140 ~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~--  217 (627)
                      .......              .   .....   ..                                   ..-+|+.+  
T Consensus       354 ~~~~~~~--------------~---~~~~~---~~-----------------------------------~~~~G~~l~~  378 (448)
T 1ky9_A          354 LQQSSQN--------------Q---VDSSS---IF-----------------------------------NGIEGAEMSN  378 (448)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EecCCCc--------------c---ccccc---cc-----------------------------------ccccceEeec
Confidence            1100000              0   00000   00                                   00011111  


Q ss_pred             ---CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         218 ---GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       218 ---~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                         ..|++|..|.++    ++|..+||++||+|++|||+++.  +++++..+|+...+.+.|.|.|++.
T Consensus       379 ~~~~~gv~V~~V~~g----spA~~aGL~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~v~R~g~  441 (448)
T 1ky9_A          379 KGKDQGVVVNNVKTG----TPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDS  441 (448)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cCCCCeEEEEEecCC----CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEEEEECCE
Confidence               247889999876    46667889999999999999999  8899999999877789999998764

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.70  E-value=3.5e-18  Score=182.75  Aligned_cols=171  Identities=14%  Similarity=0.222  Sum_probs=76.4

Q ss_pred             CccccccCCCCceEEEeccC--CceeEEEEccCC----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHH
Q psy9827          40 DLFSIFFVEPDPRFITFQKE--GSVGIRLTGGNK----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEA  112 (627)
Q Consensus        40 d~~~~~~~~~~~r~v~l~k~--g~lG~~i~g~~~----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~  112 (627)
                      |++..+......+.+.+.+.  .+|||++.+...    .+++|..|.+||||+++| |++||+|++|||.++.++++.++
T Consensus       194 d~~~~~~~~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~  273 (388)
T 3suz_A          194 DDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATC  273 (388)
T ss_dssp             HHHHHTCCSSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTH
T ss_pred             chhhhhcccccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHH
Confidence            44555666677888988875  389999987532    368999999999999999 99999999999999999999888


Q ss_pred             HHHHhc--CCCeeEEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeeccc
Q psy9827         113 VLFLLS--LQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIV  190 (627)
Q Consensus       113 ~~~l~~--~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~  190 (627)
                      ..+++.  .+..+.|+|.|.+......+                                                    
T Consensus       274 ~~~l~~~~~~~~v~l~v~r~~~~~~v~l----------------------------------------------------  301 (388)
T 3suz_A          274 QGIIKGLKNQTQVKLNIVSCPPVTTVLI----------------------------------------------------  301 (388)
T ss_dssp             HHHTTTCTTCSCEEEEEEECCSCC--------------------------------------------------------
T ss_pred             HHHHHhccCCCccccccccccccceeeE----------------------------------------------------
Confidence            888875  45679999987543211100                                                    


Q ss_pred             CCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         191 LPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       191 ~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                                    .......++|+....+ +|..|.+|    ++|..+||++||+|++|||+++.++++++++.+|++.
T Consensus       302 --------------~~~~~~~~lG~~i~~g-~I~~V~~g----s~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~  362 (388)
T 3suz_A          302 --------------KRPDLKYQLGFSVQNG-IICSLMRG----GIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNS  362 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------eecCCCCccceEEecC-EEEEeecC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence                          0000112344443333 78889876    3555677999999999999999999999999999999


Q ss_pred             CCeEEEEEEeC
Q psy9827         271 KEKLSLTIRRE  281 (627)
Q Consensus       271 ~~~v~l~V~r~  281 (627)
                      ++.++|+|.+.
T Consensus       363 ~~~v~L~V~p~  373 (388)
T 3suz_A          363 VGEIHMKTMPA  373 (388)
T ss_dssp             -----------
T ss_pred             CCeEEEEEEec
Confidence            99999999764

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.65  E-value=1.2e-15  Score=167.77  Aligned_cols=238  Identities=16%  Similarity=0.150  Sum_probs=148.7

Q ss_pred             ccccCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCceEEE----ecc------CCceeEEEEcc--
Q psy9827          10 TFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----FQK------EGSVGIRLTGG--   69 (627)
Q Consensus        10 ~~~~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l~k------~g~lG~~i~g~--   69 (627)
                      .+.|++ ++++++|+       |++|||| +++.... +..+++|++|......    +.+      .+.||++++..  
T Consensus       187 ~~IQtDAaInpGnSGGPLvn~~GeVIGIn-tai~~~~-~~~gigfAIP~~~v~~vl~~l~~~G~~~~r~~LGv~~~~~~~  264 (539)
T 4fln_A          187 LGIQIDAAINPGNSGGPAFNDQGECIGVA-FQVYRSE-ETENIGYVIPTTVVSHFLTDYERNGKYTGYPCLGVLLQKLEN  264 (539)
T ss_dssp             EEEEESSCCCTTTTTSEEECSSSCEEEEE-CCCC------CCCEEEEEHHHHHHHHHHHHTTTSCCCCCBCCEEEEECCC
T ss_pred             eEEEEEeEecCCCccchhccCCCcEEEEE-EEEecCC-CCCcceecccHHHHHHHHHHHHHcCeEEeeeecceEEEecCC
Confidence            456666 99999985       7899999 8887643 4468899999553321    211      35799998764  


Q ss_pred             ----------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCH----------HHHHHHHhcCCCeeEEEEEe
Q psy9827          70 ----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR----------EEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        70 ----------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~----------~~~~~~l~~~g~~V~L~v~r  129 (627)
                                ...|++|..|.|+|||+++ |++||+|++|||..+.+...          .......+.+|++|.|+|.|
T Consensus       265 ~~~~~~~~l~~~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R  343 (539)
T 4fln_A          265 PALRECLKVPTNEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIR  343 (539)
T ss_dssp             HHHHHHHTCSSSBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEE
T ss_pred             HHHHHhcCCCCcCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEE
Confidence                      1369999999999999986 99999999999999976432          23334445789999999999


Q ss_pred             CCcccceeeecCCCCcccc----ccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEe
Q psy9827         130 RRDEYEHVVASQRGDSFHI----KVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLS  205 (627)
Q Consensus       130 ~~~~~~~~v~~~~~~~~~l----~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~  205 (627)
                      +++.....++.......-.    .........-|..+..++....    .+.+..                  ...+.+.
T Consensus       344 ~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~----~~~~~~------------------~~~~~l~  401 (539)
T 4fln_A          344 AGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLI----EEECED------------------TIGLKLL  401 (539)
T ss_dssp             TTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHH----TTSCSS------------------SSCHHHH
T ss_pred             CCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHH----Hhhccc------------------ccCceee
Confidence            9988776665432211000    0000111122333333333211    000000                  0000000


Q ss_pred             ecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC-eEEEEE
Q psy9827         206 KSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTI  278 (627)
Q Consensus       206 k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~-~v~l~V  278 (627)
                      ..............+++|+.|.++    +++...+++.||+|++|||++|.  +.+++.++|+++++ -+.|.+
T Consensus       402 ~~~~~~~~~~~~~~gVvvs~V~~~----s~a~~~g~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          402 TKARYSVARFRGEQIVILSQVLAN----EVNIGYEDMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             HHHHHCCCSSTTCCCEEEEEECCC----GGGTTCSSCCSEEEEEETTEECC--SHHHHHHHHHTCCSSEEEEEE
T ss_pred             ehhhhhhhccCCceEEEEEEecCC----chhhhcCCCCCCEEEeECCEEcC--CHHHHHHHHHHcCCCeEEEEE
Confidence            000000000111258999999876    45666789999999999999999  99999999999876 455554

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=2.6e-15  Score=146.82  Aligned_cols=148  Identities=14%  Similarity=0.089  Sum_probs=111.3

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CC-------CCCCCHHHHHHHHhcccc-----cCCcee-
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RK-------FNFILWATIKDTAMYQSS-----KEPGMY-  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y-  508 (627)
                      ..+.|+|+||+   |+||.++|...+|..|...        ++       ++|++.+.|.+++..+.+     +.+|+| 
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            46789999999   9999999999887534431        11       279999999999866543     258888 


Q ss_pred             ----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CCC--CHHHHHHHHHHHHHHHHHhc
Q psy9827         509 ----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDI--KKEVKIKLFEQSQKLEKVWS  575 (627)
Q Consensus       509 ----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~--~e~~~~~~~~~~~~~e~~~~  575 (627)
                          .|++++++|++||||++ +.. ..+.....|+  +|||.|||.+.+     +|.  ++++++++++++. .|..+.
T Consensus        87 ~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~--~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~-~e~~~~  163 (208)
T 3tau_A           87 TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGI--FIFLTPPDLSELKNRIIGRGTESMEVVEERMETAK-KEIEMM  163 (208)
T ss_dssp             EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSE--EEEEECTTTTTSSCC-------CCHHHHHHHHHHH-HHHHHG
T ss_pred             CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeE--EEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhh
Confidence                68999999999999999 433 2221123346  999999985544     232  4455777777764 466788


Q ss_pred             CcccEEEECCCHHHHHHHHHHHHHhhCC
Q psy9827         576 HVFTGTITLSGVDVWYRKTRELIEKQQS  603 (627)
Q Consensus       576 ~~fd~vi~n~~l~~~~~~l~~~i~~~~~  603 (627)
                      +.||++|+|+++++++++|..+|..+..
T Consensus       164 ~~~d~vivN~~~~~~~~~l~~~i~~~~~  191 (208)
T 3tau_A          164 ASYDYAVVNDVVANAVQKIKGIVETEHL  191 (208)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999987644

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.57  E-value=1.2e-14  Score=142.07  Aligned_cols=146  Identities=16%  Similarity=0.213  Sum_probs=107.3

Q ss_pred             CCCCEEEEEeCCCChhhhcCCCCC-CEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCcccc
Q psy9827          70 NKVGIFVTAVQPGSPASLQGLQPG-DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHI  148 (627)
Q Consensus        70 ~~~gi~V~~V~~gspA~~aGL~~G-D~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l  148 (627)
                      ...|++|..|.++|||++|||++| |+|++|||.++.++++..........+..+.|+|.|.+......+...+...   
T Consensus        14 ~~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~---   90 (209)
T 3rle_A           14 GTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNL---   90 (209)
T ss_dssp             SSEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSS---
T ss_pred             CCCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEccccc---
Confidence            456899999999999999999999 9999999999999988776555567789999999986543222221100000   


Q ss_pred             ccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeee---------CC
Q psy9827         149 KVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL---------GN  219 (627)
Q Consensus       149 ~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~---------~~  219 (627)
                                      ..                                          ....+|+..         ..
T Consensus        91 ----------------~~------------------------------------------~~~~lGi~~~~~~~~~~~~~  112 (209)
T 3rle_A           91 ----------------WG------------------------------------------GQGLLGVSIRFCSFDGANEN  112 (209)
T ss_dssp             ----------------SS------------------------------------------SSSSSCEEEEEEECTTGGGS
T ss_pred             ----------------cc------------------------------------------ccCccceEEeecChhHcccc
Confidence                            00                                          000111111         14


Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCC-CCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAE-GDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVP  283 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~-GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~~~  283 (627)
                      |++|..|.++    ++|..+||++ ||+|++|||. +.  +.+++..+++.. +..+.|.|.|+..
T Consensus       113 Gv~V~~V~~~----spA~~aGl~~~GD~I~~ing~-v~--~~~~l~~~l~~~~g~~v~l~v~r~~~  171 (209)
T 3rle_A          113 VWHVLEVESN----SPAALAGLRPHSDYIIGADTV-MN--ESEDLFSLIETHEAKPLKLYVYNTDT  171 (209)
T ss_dssp             CEEEEEECTT----SHHHHHTCCTTTEEEEEESSC-CC--SSSCHHHHHHHTTTSCEEEEEEETTT
T ss_pred             ceEEEEeCCC----ChHHHCCCCCCCCEEEECCCE-eC--CHHHHHHHHHhCCCCeEEEEEEECCc
Confidence            7899999876    4666789999 9999999998 77  778888888875 6689999988653

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=4.7e-14  Score=124.85  Aligned_cols=97  Identities=28%  Similarity=0.395  Sum_probs=78.8

Q ss_pred             cCCCCCccccccCCCCceEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCC
Q psy9827          35 QPGSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK  105 (627)
Q Consensus        35 ~~~~~d~~~~~~~~~~~r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~  105 (627)
                      .....|||+.|+...+.+.+.+.+. ++|||++.++.       +.|++|..|.+||||+++| |++||+|++|||.++.
T Consensus         9 ~~~~~dp~s~y~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~   88 (117)
T 2byg_A            9 SGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLE   88 (117)
T ss_dssp             -----------CEEEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred             CccCCCCcccccCCCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC
Confidence            3456799999999999999998776 58999999863       3589999999999999999 9999999999999999


Q ss_pred             CCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827         106 GITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus       106 ~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      ++++.+++..++..+..|.|+|.|..
T Consensus        89 ~~~~~~~~~~l~~~g~~v~l~v~R~~  114 (117)
T 2byg_A           89 EVTHEEAVAILKNTSEVVYLKVGKPT  114 (117)
T ss_dssp             TCCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            99999999999988999999999854

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.50  E-value=9.7e-14  Score=121.82  Aligned_cols=100  Identities=18%  Similarity=0.352  Sum_probs=75.8

Q ss_pred             ccccCCCCCccccccCCCCceEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCC
Q psy9827          32 TAVQPGSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI  107 (627)
Q Consensus        32 ~ai~~~~~d~~~~~~~~~~~r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~  107 (627)
                      ++.+....|+|+.++...+.+.+.+.+. ++|||++.++.  ..|++|..|.++|||+++| |++||+|++|||.++.++
T Consensus         6 ~~~~~~~~d~~t~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~   85 (112)
T 2r4h_A            6 HHSSGVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNM   85 (112)
T ss_dssp             -----------------CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTC
T ss_pred             cccccCCCCCcccccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC
Confidence            4556677899999999999999999886 48999999874  4689999999999999999 999999999999999999


Q ss_pred             CHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827         108 TREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus       108 ~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      ++.++...++..+..|.|+|.|+.
T Consensus        86 ~~~~~~~~l~~~g~~v~l~v~R~~  109 (112)
T 2r4h_A           86 KHSRAIELIKNGGRRVRLFLKRGE  109 (112)
T ss_dssp             CHHHHHHHHHTTTTEEEEEEECCE
T ss_pred             CHHHHHHHHHcCCCeEEEEEEeCC
Confidence            999999888888999999998754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.46  E-value=2.7e-13  Score=133.50  Aligned_cols=147  Identities=16%  Similarity=0.087  Sum_probs=108.0

Q ss_pred             CCCceEEEeCcc---HHHHHHHHhhhCCC---Cccc------CCCC-------CCCCHHHHHHHHhccccc-----CCce
Q psy9827         452 GFIRPVVLFGPV---ADLARDKLLKDFPD---KFSA------PRKF-------NFILWATIKDTAMYQSSK-----EPGM  507 (627)
Q Consensus       452 ~~~RpvVl~Gp~---k~~l~~~Ll~~~p~---~f~~------~~~~-------~Fvs~e~f~~~i~~~~~~-----~~~~  507 (627)
                      ...+.++|+||+   |+||.+.|+...|.   .+..      +++.       +|++.+.|+.++..|++.     .+++
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~   93 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY   93 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence            456899999999   99999999988762   2222      1111       488999999987654432     4777


Q ss_pred             e-----hHHhHHhCCCcEEEecC-Cce--eccccCCCCceeEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHH
Q psy9827         508 Y-----QGKDSMYQGKDSMYQGK-ESM--YQGKDSMYQGKDSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEK  572 (627)
Q Consensus       508 Y-----~V~~v~~~gk~ciLdi~-~~l--~~~~~~~~P~~~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~  572 (627)
                      |     .|++++++|+.||||+| ...  ..   ++++-..+|||.||+++.+     .+  .+++++++++.++. .|.
T Consensus        94 yg~~~~~v~~~l~~G~illLDLD~~~~~~i~---~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~-~e~  169 (219)
T 1s96_A           94 YGTSREAIEQVLATGVDVFLDIDWQGAQQIR---QKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAV-AEM  169 (219)
T ss_dssp             EEEEHHHHHHHHTTTCEEEEECCHHHHHHHH---HHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHH-HHH
T ss_pred             CCCCHHHHHHHHhcCCeEEEEECHHHHHHHH---HHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHH
Confidence            7     68999999999999999 322  22   2222222999999996543     33  45565777776664 466


Q ss_pred             HhcCcccEEEECCCHHHHHHHHHHHHHhhC
Q psy9827         573 VWSHVFTGTITLSGVDVWYRKTRELIEKQQ  602 (627)
Q Consensus       573 ~~~~~fd~vi~n~~l~~~~~~l~~~i~~~~  602 (627)
                      .+.+.||++|+|||+++|+.+|+++|..+.
T Consensus       170 ~~~~~~d~~i~Nd~l~~a~~~l~~ii~~~~  199 (219)
T 1s96_A          170 SHYAEYDYLIVNDDFDTALTDLKTIIRAER  199 (219)
T ss_dssp             TTGGGSSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCEEEECcCHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999997653

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.45  E-value=2.2e-13  Score=120.65  Aligned_cols=93  Identities=27%  Similarity=0.519  Sum_probs=80.8

Q ss_pred             CCccccccCCCCceEEEeccC--CceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHH
Q psy9827          39 PDLFSIFFVEPDPRFITFQKE--GSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITRE  110 (627)
Q Consensus        39 ~d~~~~~~~~~~~r~v~l~k~--g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~  110 (627)
                      .+++..|+..+.++.+.+.+.  ++|||++.++.     ..|++|..|.+||||+++| |++||+|++|||.++.++++.
T Consensus        13 ~~~~~~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~   92 (118)
T 3b76_A           13 LGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS   92 (118)
T ss_dssp             -----CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHH
T ss_pred             CCccccccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            567888999999999999876  48999999974     3589999999999999999 999999999999999999999


Q ss_pred             HHHHHHhcCCCeeEEEEEeCC
Q psy9827         111 EAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus       111 ~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      +++.+++..++.|+|+|.|..
T Consensus        93 ~~~~~l~~~~~~v~L~v~R~~  113 (118)
T 3b76_A           93 EAVALLKRTSSSIVLKALEVK  113 (118)
T ss_dssp             HHHHHHHSCCSEEEEEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEEEECC
Confidence            999999999999999998743

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.44  E-value=5.6e-13  Score=109.59  Aligned_cols=76  Identities=25%  Similarity=0.414  Sum_probs=69.6

Q ss_pred             CCceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      .++|.|.+.|.  ++|||++.++     +|..|.+||||+++||++||+|++|||+++.+++|.+++.+++..+..|+|+
T Consensus         3 ~~~r~v~l~k~~~g~~Gf~i~~g-----~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~   77 (82)
T 1r6j_A            3 MDPRTITMHKDSTGHVGFIFKNG-----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT   77 (82)
T ss_dssp             TCCEEEEEECCTTSCCCEEEETT-----EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CceEEEEEEECCCCCeEEEEECC-----EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEE
Confidence            57899999886  4799999865     3789999999999999999999999999999999999999999999999999


Q ss_pred             EEe
Q psy9827         127 VQN  129 (627)
Q Consensus       127 v~r  129 (627)
                      |..
T Consensus        78 v~p   80 (82)
T 1r6j_A           78 IMP   80 (82)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.43  E-value=1.2e-12  Score=110.04  Aligned_cols=84  Identities=27%  Similarity=0.537  Sum_probs=76.4

Q ss_pred             CCCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      .|.+|.+.+.+. ++|||++.++. ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+.|
T Consensus         2 ~~~~r~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l   81 (90)
T 2he4_A            2 MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARL   81 (90)
T ss_dssp             TTCCEEEEEECBTTBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEE
T ss_pred             CCCcEEEEEEECCCCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence            578999999886 58999999875 3689999999999999999999999999999999999999999999888899999


Q ss_pred             EEEeCC
Q psy9827         126 IVQNRR  131 (627)
Q Consensus       126 ~v~r~~  131 (627)
                      ++.|..
T Consensus        82 ~v~r~~   87 (90)
T 2he4_A           82 LVVGPS   87 (90)
T ss_dssp             EEECCC
T ss_pred             EEEccC
Confidence            999754

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.41  E-value=5.7e-13  Score=117.56  Aligned_cols=99  Identities=27%  Similarity=0.444  Sum_probs=87.7

Q ss_pred             CCCCCccccccCCCCceEEEeccC-CceeEEEEccCC---CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHH
Q psy9827          36 PGSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGGNK---VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITRE  110 (627)
Q Consensus        36 ~~~~d~~~~~~~~~~~r~v~l~k~-g~lG~~i~g~~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~  110 (627)
                      +.+.|+|+.++...+.+.+.+.+. ++|||++.++.+   .+++|..|.++|||+++| |++||+|++|||.++.++++.
T Consensus         3 ~~~~Dp~s~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~   82 (116)
T 2dm8_A            3 SGSSGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHE   82 (116)
T ss_dssp             CSCCCSSSCCCCTTSCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHH
T ss_pred             CCCCCcccCccCCCCEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHH
Confidence            456799999999889999998776 589999998754   589999999999999999 999999999999999999999


Q ss_pred             HHHHHHhcCCCeeEEEEEeCCccc
Q psy9827         111 EAVLFLLSLQDQIHLIVQNRRDEY  134 (627)
Q Consensus       111 ~~~~~l~~~g~~V~L~v~r~~~~~  134 (627)
                      ++...++..+..|.|+|.|+...+
T Consensus        83 ~~~~~l~~~~~~v~l~v~R~~~~~  106 (116)
T 2dm8_A           83 EAITALRQTPQKVRLVVYRDEAHY  106 (116)
T ss_dssp             HHHHHHHTCCSEEEEEEECCSSCC
T ss_pred             HHHHHHHhCCCeEEEEEEeCCccc
Confidence            999888877899999999876543

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.41  E-value=6.1e-13  Score=117.84  Aligned_cols=95  Identities=33%  Similarity=0.426  Sum_probs=79.8

Q ss_pred             CCCCccccccCC----CCceEEEeccCCceeEEEEccCC---CCEEEEEeCCCChhhhc-CCCCCCEEEEECCEeCCCCC
Q psy9827          37 GSPDLFSIFFVE----PDPRFITFQKEGSVGIRLTGGNK---VGIFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMKGIT  108 (627)
Q Consensus        37 ~~~d~~~~~~~~----~~~r~v~l~k~g~lG~~i~g~~~---~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~  108 (627)
                      ++.|||+.|...    ...+.+.+.+.++|||++.++.+   ..++|..|.+||||+++ ||++||+|++|||.++.+++
T Consensus         1 ~~~dP~s~~~~~~~~~~~~~~~~~~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~   80 (118)
T 1v6b_A            1 GSEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT   80 (118)
T ss_dssp             CCCCCCSSSCHHHHSSCCEEEEEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCB
T ss_pred             CCCCCcceecccccCCceEEEEEECCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            467899987433    34677788888899999998743   34999999999999999 79999999999999999999


Q ss_pred             HHHHHHHHhcC----CCeeEEEEEeCC
Q psy9827         109 REEAVLFLLSL----QDQIHLIVQNRR  131 (627)
Q Consensus       109 ~~~~~~~l~~~----g~~V~L~v~r~~  131 (627)
                      +.++...++..    +..|+|+|.|.+
T Consensus        81 ~~~~~~~l~~~~~~~g~~v~l~v~r~~  107 (118)
T 1v6b_A           81 LAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             HHHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence            99998887643    889999999854

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.40  E-value=1.8e-12  Score=125.90  Aligned_cols=148  Identities=16%  Similarity=0.149  Sum_probs=108.2

Q ss_pred             CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccCC---------------CCCCCCHHHHHHHHhcccc-----cCCce
Q psy9827         451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPR---------------KFNFILWATIKDTAMYQSS-----KEPGM  507 (627)
Q Consensus       451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~---------------~~~Fvs~e~f~~~i~~~~~-----~~~~~  507 (627)
                      ....++|+|+||+   |+||.++|.+.+|..|..++               ..+|++.++|..++..|.+     +.+++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF   88 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence            3457899999999   99999999998876344322               1269999999998876544     35778


Q ss_pred             e-----hHHhHHhCCCcEEEecC-Cce-eccccCCC----CceeEEEEcCCCcccC-----CCC--CHHHHHHHHHHHHH
Q psy9827         508 Y-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMY----QGKDSMYQGKDSMYQG-----KDI--KKEVKIKLFEQSQK  569 (627)
Q Consensus       508 Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~----P~~~vIFI~ppsl~~~-----~~~--~e~~~~~~~~~~~~  569 (627)
                      |     .|++++++|+.||+|++ +.+ ..+  ..+    ++  +|||.|+|.+.+     +|.  +++++++++.+..+
T Consensus        89 ~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~--~~~~~~~~~--~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~  164 (204)
T 2qor_A           89 YGTLKSEYDLAVGEGKICLFEMNINGVKQLK--ESKHIQDGI--YIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTR  164 (204)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEECCHHHHHHHH--HCSSCSCCE--EEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHcCCeEEEEECHHHHHHHH--HhcCCCCeE--EEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            8     68889999999999999 433 222  233    46  999998884433     333  45556665655532


Q ss_pred             -HHHHhcCcccEEEECCCHHHHHHHHHHHHHhhC
Q psy9827         570 -LEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQ  602 (627)
Q Consensus       570 -~e~~~~~~fd~vi~n~~l~~~~~~l~~~i~~~~  602 (627)
                       ++..|...||++|+|+++++++++|.++|..+.
T Consensus       165 ~~~~~~~~~~d~vi~n~~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          165 EMDEADKVGFNYFIVNDDLARTYAELREYLLGSY  198 (204)
T ss_dssp             HHHHHHHHTCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhccCcEEEECcCHHHHHHHHHHHHHHHh
Confidence             332277889999999999999999999998753

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.39  E-value=1.2e-12  Score=116.37  Aligned_cols=89  Identities=28%  Similarity=0.463  Sum_probs=74.1

Q ss_pred             ccCCCCceEEEeccCC--ceeEEEEccC-----CCCEEEEEeCCCChhhhc-CCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy9827          45 FFVEPDPRFITFQKEG--SVGIRLTGGN-----KVGIFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMKGITREEAVLFL  116 (627)
Q Consensus        45 ~~~~~~~r~v~l~k~g--~lG~~i~g~~-----~~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~~~~~~l  116 (627)
                      +...+.++.|.+.|..  +|||++.++.     ..+++|..|.++|||+++ ||++||+|++|||.++.++++.+++..+
T Consensus        19 ~s~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l   98 (120)
T 2iwo_A           19 YFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL   98 (120)
T ss_dssp             ------CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             CCCCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3345678899998863  8999999874     347999999999999999 8999999999999999999999999999


Q ss_pred             hcCCCeeEEEEEeCCcc
Q psy9827         117 LSLQDQIHLIVQNRRDE  133 (627)
Q Consensus       117 ~~~g~~V~L~v~r~~~~  133 (627)
                      +..++.|+|+|.|....
T Consensus        99 ~~~~~~v~l~v~r~g~~  115 (120)
T 2iwo_A           99 KNASGSIEMQVVAGGDV  115 (120)
T ss_dssp             HHCCSEEEEEEECCTTS
T ss_pred             HcCCCeEEEEEEECCcc
Confidence            98899999999987654

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.38  E-value=1.7e-12  Score=112.01  Aligned_cols=86  Identities=34%  Similarity=0.687  Sum_probs=76.7

Q ss_pred             CCceEEEeccCC-ceeEEEEccCC-CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          49 PDPRFITFQKEG-SVGIRLTGGNK-VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        49 ~~~r~v~l~k~g-~lG~~i~g~~~-~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      +.++.+.+.+.+ +|||++.++.+ .|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..++.+.|
T Consensus        10 ~~~~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l   89 (104)
T 3i4w_A           10 REPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI   89 (104)
T ss_dssp             SSCEEEEEECBTTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEE
T ss_pred             CccEEEEEEeCCCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            578889998864 89999998754 489999999999999999 999999999999999999999999999989999999


Q ss_pred             EEEeCCccc
Q psy9827         126 IVQNRRDEY  134 (627)
Q Consensus       126 ~v~r~~~~~  134 (627)
                      ++.|+++.+
T Consensus        90 ~v~r~~~~~   98 (104)
T 3i4w_A           90 IAQYKPEEY   98 (104)
T ss_dssp             EEEECHHHH
T ss_pred             EEEECcchh
Confidence            999876543

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.38  E-value=2.8e-12  Score=115.81  Aligned_cols=92  Identities=18%  Similarity=0.230  Sum_probs=77.5

Q ss_pred             CCCccccccCCCCceEEEeccC--CceeEEEEccCCC--------------CEEEEEeCCCChhhhcCCCCCCEEEEECC
Q psy9827          38 SPDLFSIFFVEPDPRFITFQKE--GSVGIRLTGGNKV--------------GIFVTAVQPGSPASLQGLQPGDKILKVND  101 (627)
Q Consensus        38 ~~d~~~~~~~~~~~r~v~l~k~--g~lG~~i~g~~~~--------------gi~V~~V~~gspA~~aGL~~GD~Il~VnG  101 (627)
                      ..++|+.+.  ...+.+.+.|.  ++|||+|.++...              |++|..|.+||||+++||++||+|++|||
T Consensus        17 ~~~~~s~~~--~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng   94 (132)
T 3l4f_D           17 PRGSGSDYI--IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNG   94 (132)
T ss_dssp             --CCSCCCC--CCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESS
T ss_pred             cCCCCCCcC--CCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECC
Confidence            345566554  35667777764  5899999998542              79999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827         102 MDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus       102 ~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      .++.++++.+++..++..+..+.|+|.+..
T Consensus        95 ~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~  124 (132)
T 3l4f_D           95 QNVVKVGHRQVVNMIRQGGNTLMVKVVMVT  124 (132)
T ss_dssp             SBCTTSCHHHHHHHHHHTTTEEEEEEECCC
T ss_pred             EECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            999999999999999989999999998754

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.37  E-value=2.6e-12  Score=112.44  Aligned_cols=89  Identities=25%  Similarity=0.478  Sum_probs=78.3

Q ss_pred             ccCCCCceEEEeccCC-ceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          45 FFVEPDPRFITFQKEG-SVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        45 ~~~~~~~r~v~l~k~g-~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      .+....++.+.+.+.+ +|||++.++.+.|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..++.
T Consensus        10 ~~~~~~~~~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   89 (111)
T 2dlu_A           10 TVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNS   89 (111)
T ss_dssp             CCSCSEEEEEEEECCSSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSE
T ss_pred             CcCcCceEEEEEEeCCCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            3445567888888864 89999998877899999999999999999 999999999999999999999998888877899


Q ss_pred             eEEEEEeCCcc
Q psy9827         123 IHLIVQNRRDE  133 (627)
Q Consensus       123 V~L~v~r~~~~  133 (627)
                      |.|+|.|+...
T Consensus        90 v~l~v~R~~~~  100 (111)
T 2dlu_A           90 VRMLVARDPAG  100 (111)
T ss_dssp             EEEEEEESCTT
T ss_pred             EEEEEEeCCCC
Confidence            99999986643

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=1.7e-12  Score=114.81  Aligned_cols=86  Identities=31%  Similarity=0.539  Sum_probs=75.8

Q ss_pred             CCCCceEEEeccC-CceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          47 VEPDPRFITFQKE-GSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        47 ~~~~~r~v~l~k~-g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      ..|.++.|.|.|. .+|||++.++.     +.|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..
T Consensus        22 ~~~~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  101 (117)
T 2fne_A           22 SMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT  101 (117)
T ss_dssp             -CCEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCCccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3567788999886 48999999863     3589999999999999999 999999999999999999999999999888


Q ss_pred             CCeeEEEEEeCCc
Q psy9827         120 QDQIHLIVQNRRD  132 (627)
Q Consensus       120 g~~V~L~v~r~~~  132 (627)
                      +..|.|+|.|.+.
T Consensus       102 ~~~v~l~v~R~g~  114 (117)
T 2fne_A          102 KGTVTLMVLSSDE  114 (117)
T ss_dssp             CSSEEEEEEECSC
T ss_pred             CCeEEEEEEeCCc
Confidence            8889999998653

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.37  E-value=5.8e-12  Score=105.93  Aligned_cols=81  Identities=30%  Similarity=0.551  Sum_probs=70.9

Q ss_pred             CceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      .+|.+.+.+. ++|||++.++. ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+.+.+
T Consensus         3 ~~r~v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~   82 (91)
T 1g9o_A            3 LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV   82 (91)
T ss_dssp             CCEEEEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             ccEEEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence            5788999886 48999998875 369999999999999999999999999999999999999999999987767766666


Q ss_pred             EeC
Q psy9827         128 QNR  130 (627)
Q Consensus       128 ~r~  130 (627)
                      .++
T Consensus        83 ~~r   85 (91)
T 1g9o_A           83 VDP   85 (91)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            543

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.36  E-value=2e-12  Score=115.49  Aligned_cols=93  Identities=46%  Similarity=0.859  Sum_probs=79.2

Q ss_pred             cCCCCceEEEeccCCceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCee
Q psy9827          46 FVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL--SLQDQI  123 (627)
Q Consensus        46 ~~~~~~r~v~l~k~g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~--~~g~~V  123 (627)
                      ...|..+.+.+.+.++|||++.++.+.|++|..|.++|||+++||++||+|++|||.++.++++.++...+.  ..+..+
T Consensus        25 ~~~p~~~~~~~~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v  104 (124)
T 3tsv_A           25 ILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV  104 (124)
T ss_dssp             ---CCCEEEEEECSSCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEE
T ss_pred             ccCCCeEEEEcCCCCceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEE
Confidence            345677777777778999999987778999999999999999999999999999999999999888888766  578999


Q ss_pred             EEEEEeCCcccceee
Q psy9827         124 HLIVQNRRDEYEHVV  138 (627)
Q Consensus       124 ~L~v~r~~~~~~~~v  138 (627)
                      .|+|.|+++.+...+
T Consensus       105 ~l~v~R~~~~~~~~~  119 (124)
T 3tsv_A          105 TILAQKKKDVYRRIV  119 (124)
T ss_dssp             EEEEEECHHHHHHHT
T ss_pred             EEEEEECCchhhhhH
Confidence            999999877665443

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.36  E-value=5.9e-12  Score=108.79  Aligned_cols=90  Identities=33%  Similarity=0.525  Sum_probs=77.7

Q ss_pred             cccccCCCCceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy9827          42 FSIFFVEPDPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL  117 (627)
Q Consensus        42 ~~~~~~~~~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~  117 (627)
                      +...+....++.+.+.+.  ++|||++.++.+  .|++|..|.++|||+++||++||+|++|||.++.++++.++...++
T Consensus         7 ~~~~~~~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   86 (104)
T 1wi2_A            7 GNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILK   86 (104)
T ss_dssp             SCCCCCSSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             cccCcCCCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            333455567899999886  589999998743  5899999999999999999999999999999999999999988888


Q ss_pred             cCCCeeEEEEEeCCc
Q psy9827         118 SLQDQIHLIVQNRRD  132 (627)
Q Consensus       118 ~~g~~V~L~v~r~~~  132 (627)
                      . +..+.|+|.|.+.
T Consensus        87 ~-~~~v~l~v~r~~~  100 (104)
T 1wi2_A           87 T-AREISMRVRFFSG  100 (104)
T ss_dssp             H-SSSEEEEEECCCC
T ss_pred             C-CCEEEEEEEECCC
Confidence            7 7899999998653

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.36  E-value=3e-12  Score=123.95  Aligned_cols=145  Identities=14%  Similarity=0.162  Sum_probs=107.1

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCcccCC--------C-------CCCCCHHHHHHHHhcccc-----cCCcee--
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPR--------K-------FNFILWATIKDTAMYQSS-----KEPGMY--  508 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~--------~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y--  508 (627)
                      .++++|+||+   |+||.+.|+..+|..|..++        .       .+|++.+.|..++..+.+     +.+|+|  
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g~   83 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGT   83 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCCC
Confidence            5799999999   99999999987775555422        1       158899999998754432     258888  


Q ss_pred             ---hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-------CCCCHHHHHHHHHHHHHHHHHhc-
Q psy9827         509 ---QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-------KDIKKEVKIKLFEQSQKLEKVWS-  575 (627)
Q Consensus       509 ---~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-------~~~~e~~~~~~~~~~~~~e~~~~-  575 (627)
                         .|+++++.|+.|++|++ ..+ ..+...+.|.  ++|+.||++..+       ...+++++++.+.++.+ +..+. 
T Consensus        84 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~-~~~~a~  160 (198)
T 1lvg_A           84 SKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPI--YIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART-DMESSK  160 (198)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCE--EEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH-HTTGGG
T ss_pred             CHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcE--EEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHhh
Confidence               78899999999999998 433 2222255677  899999994332       33456656666655543 33444 


Q ss_pred             --CcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827         576 --HVFTGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       576 --~~fd~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                        +.||+||+|+++++++++|.++|...
T Consensus       161 ~~~~~D~iivnd~le~a~~~l~~ii~~~  188 (198)
T 1lvg_A          161 EPGLFDLVIINDDLDKAYATLKQALSEE  188 (198)
T ss_dssp             STTTCSEEEECSSHHHHHHHHHHHTHHH
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHHHHH
Confidence              78999999999999999999999764

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.36  E-value=4.1e-12  Score=106.89  Aligned_cols=83  Identities=30%  Similarity=0.426  Sum_probs=72.9

Q ss_pred             ceEEEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          51 PRFITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        51 ~r~v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      ++.+.+...++|||++.++.+  .|++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+.|+|.
T Consensus         4 ~~~v~~~~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~   83 (91)
T 2pkt_A            4 TQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVA   83 (91)
T ss_dssp             EEEEEEESSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEE
T ss_pred             cEEEEECCCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            355666667799999998744  589999999999999999999999999999999999999988888888999999999


Q ss_pred             eCCcc
Q psy9827         129 NRRDE  133 (627)
Q Consensus       129 r~~~~  133 (627)
                      |++..
T Consensus        84 R~g~~   88 (91)
T 2pkt_A           84 RSEHE   88 (91)
T ss_dssp             EECCC
T ss_pred             ECCcc
Confidence            86643

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.35  E-value=5.3e-12  Score=110.09  Aligned_cols=88  Identities=26%  Similarity=0.459  Sum_probs=76.7

Q ss_pred             cccCCCCceEEEeccCCceeEEEEccCC----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy9827          44 IFFVEPDPRFITFQKEGSVGIRLTGGNK----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS  118 (627)
Q Consensus        44 ~~~~~~~~r~v~l~k~g~lG~~i~g~~~----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~  118 (627)
                      .+...+..+.+.+.+..+|||++.++.+    .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++.
T Consensus         9 ~~~~~~~~~~v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~   88 (109)
T 1wi4_A            9 PLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR   88 (109)
T ss_dssp             SCCCCTTEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3445678899999998899999998643    379999999999999999 99999999999999999999999999884


Q ss_pred             C----CCeeEEEEEeCC
Q psy9827         119 L----QDQIHLIVQNRR  131 (627)
Q Consensus       119 ~----g~~V~L~v~r~~  131 (627)
                      .    +..++|.+.|..
T Consensus        89 ~~~r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           89 AKLRSESPWEIAFIRSG  105 (109)
T ss_dssp             SCCSSSSCEEEEEECCC
T ss_pred             cccCCCceEEEEEEeCC
Confidence            3    578889888754

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.35  E-value=8.4e-12  Score=106.06  Aligned_cols=83  Identities=34%  Similarity=0.559  Sum_probs=73.5

Q ss_pred             CCceEEEeccC-CceeEEEEccCC-----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNK-----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQD  121 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~  121 (627)
                      .+.+.+.+.+. .+|||++.++.+     .|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+.
T Consensus         4 g~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~   83 (96)
T 1d5g_A            4 GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ   83 (96)
T ss_dssp             TCEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCS
T ss_pred             CCEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            35677788776 489999998643     589999999999999999 99999999999999999999999988888889


Q ss_pred             eeEEEEEeCC
Q psy9827         122 QIHLIVQNRR  131 (627)
Q Consensus       122 ~V~L~v~r~~  131 (627)
                      .+.|+|.|++
T Consensus        84 ~v~l~v~R~~   93 (96)
T 1d5g_A           84 VVHLLLEKGQ   93 (96)
T ss_dssp             EEEEEEECCS
T ss_pred             eEEEEEEcCC
Confidence            9999998755

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.35  E-value=5.5e-12  Score=107.25  Aligned_cols=85  Identities=27%  Similarity=0.474  Sum_probs=75.0

Q ss_pred             CCceEEEeccC-CceeEEEEccC----CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGN----KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~----~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      +.+|.+.+.+. .+|||++.+..    ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+
T Consensus         2 ~~~r~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   81 (96)
T 2v90_A            2 MKPRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCV   81 (96)
T ss_dssp             CCCEEEEEECBTTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CCCEEEEEEeCCCcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            46899999886 48999998742    24799999999999999999999999999999999999999998888779999


Q ss_pred             EEEEEeCCcc
Q psy9827         124 HLIVQNRRDE  133 (627)
Q Consensus       124 ~L~v~r~~~~  133 (627)
                      .|+|.|+...
T Consensus        82 ~l~v~r~~~~   91 (96)
T 2v90_A           82 SLTVVDPEAD   91 (96)
T ss_dssp             EEEEECCCTT
T ss_pred             EEEEECCCCc
Confidence            9999986543

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.35  E-value=8.2e-12  Score=106.55  Aligned_cols=85  Identities=27%  Similarity=0.449  Sum_probs=74.7

Q ss_pred             CceEEEeccC-CceeEEEEccCC---CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNK---VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      ..+.+.+.+. ++|||++.++.+   .|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..++.+.
T Consensus         4 ~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   83 (98)
T 2opg_A            4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR   83 (98)
T ss_dssp             EEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             CEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4567778776 589999998754   589999999999999999 99999999999999999999999988888889999


Q ss_pred             EEEEeCCccc
Q psy9827         125 LIVQNRRDEY  134 (627)
Q Consensus       125 L~v~r~~~~~  134 (627)
                      |+|.|+...+
T Consensus        84 l~v~R~~~~~   93 (98)
T 2opg_A           84 LTLYRDEAPY   93 (98)
T ss_dssp             EEEEECSSCC
T ss_pred             EEEEcCCCCC
Confidence            9999876543

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.34  E-value=5.5e-12  Score=109.32  Aligned_cols=86  Identities=27%  Similarity=0.531  Sum_probs=73.4

Q ss_pred             CCCceEEEeccCCceeEEEEcc-----CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy9827          48 EPDPRFITFQKEGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQD  121 (627)
Q Consensus        48 ~~~~r~v~l~k~g~lG~~i~g~-----~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~  121 (627)
                      .+....+.+...++|||++.++     ...|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..++
T Consensus         9 ~~~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~   88 (106)
T 3axa_A            9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS   88 (106)
T ss_dssp             -CCEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             CceEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3455556673346899999874     34589999999999999999 99999999999999999999999999988999


Q ss_pred             eeEEEEEeCCcc
Q psy9827         122 QIHLIVQNRRDE  133 (627)
Q Consensus       122 ~V~L~v~r~~~~  133 (627)
                      .+.|+|.|+...
T Consensus        89 ~v~l~v~R~~~~  100 (106)
T 3axa_A           89 VVTLEVAKQGAI  100 (106)
T ss_dssp             EEEEEEECCCSS
T ss_pred             eEEEEEEeCCcc
Confidence            999999987654

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=5.7e-12  Score=109.45  Aligned_cols=84  Identities=30%  Similarity=0.519  Sum_probs=74.9

Q ss_pred             CCceEEEeccC-CceeEEEEccC----------CCCEEEEEeCCCChhhhc-CCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGN----------KVGIFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMKGITREEAVLFL  116 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~----------~~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~~~~~~l  116 (627)
                      ..++.+.+.|. ++|||++.++.          ..|++|..|.++|||+++ ||++||+|++|||.++.++++.+++..+
T Consensus         7 ~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~   86 (107)
T 1uhp_A            7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             SEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             cEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46677888886 58999999864          458999999999999999 8999999999999999999999999999


Q ss_pred             hcCCCeeEEEEEeCCc
Q psy9827         117 LSLQDQIHLIVQNRRD  132 (627)
Q Consensus       117 ~~~g~~V~L~v~r~~~  132 (627)
                      +..++.+.|+|.|+.+
T Consensus        87 ~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           87 KTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHCCSSEEEEEEECCS
T ss_pred             HcCCCcEEEEEEeCCC
Confidence            9888999999988653

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.34  E-value=6.3e-12  Score=105.53  Aligned_cols=82  Identities=33%  Similarity=0.463  Sum_probs=73.5

Q ss_pred             CCceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhc-CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      +.++.+.+.+.  ++|||++.++.  ..+++|..|.++|||+++ ||++||+|++|||.++.++++.++...++..+..+
T Consensus         3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v   82 (90)
T 1qav_A            3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV   82 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            46788988885  48999999863  358999999999999999 89999999999999999999999999999889999


Q ss_pred             EEEEEeC
Q psy9827         124 HLIVQNR  130 (627)
Q Consensus       124 ~L~v~r~  130 (627)
                      .|+|.|.
T Consensus        83 ~l~v~r~   89 (90)
T 1qav_A           83 VLEVKYM   89 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999874

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.34  E-value=6.7e-12  Score=108.61  Aligned_cols=84  Identities=33%  Similarity=0.440  Sum_probs=73.7

Q ss_pred             CceEEEeccC-CceeEEEEccCC-------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNK-------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~-------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      ..+.|.+.+. ++|||++.++.+       .|++|..|.++|||+++| |++||+|++|||.++.+.++.++...++..+
T Consensus         3 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (105)
T 2awx_A            3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS   82 (105)
T ss_dssp             CEEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCC
T ss_pred             eEEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4566778775 589999998743       489999999999999999 9999999999999999999999999999889


Q ss_pred             CeeEEEEEeCCcc
Q psy9827         121 DQIHLIVQNRRDE  133 (627)
Q Consensus       121 ~~V~L~v~r~~~~  133 (627)
                      ..|.|+|.|....
T Consensus        83 ~~v~l~v~R~~~~   95 (105)
T 2awx_A           83 DFVYLKVAKPTSM   95 (105)
T ss_dssp             SEEEEEEECCCC-
T ss_pred             CeEEEEEEcCCCC
Confidence            9999999986644

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.34  E-value=7.5e-12  Score=105.88  Aligned_cols=82  Identities=29%  Similarity=0.457  Sum_probs=71.6

Q ss_pred             CceEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      +.+.|.|.+. .+|||++.++.       ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS   82 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3567788776 48999999863       2489999999999999999 9999999999999999999999998888888


Q ss_pred             CeeEEEEEeCC
Q psy9827         121 DQIHLIVQNRR  131 (627)
Q Consensus       121 ~~V~L~v~r~~  131 (627)
                      ..|.|+|.|+.
T Consensus        83 ~~v~l~v~R~g   93 (94)
T 2fe5_A           83 DMVYLKVAKPG   93 (94)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEcCC
Confidence            89999998753

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.34  E-value=8e-12  Score=104.81  Aligned_cols=82  Identities=15%  Similarity=0.205  Sum_probs=72.0

Q ss_pred             CceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeeEE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQIHL  125 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~V~L  125 (627)
                      +++.|.+.|. .+|||+|.++....+||++|.+||+|++.| |++||.|++|||+++.+++|.+++.+|+.  .+.+++|
T Consensus         5 ~~k~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L   84 (95)
T 3gge_A            5 IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTM   84 (95)
T ss_dssp             EEEEEEEECCSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEE
T ss_pred             eEEEEEEEECCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEE
Confidence            4577888886 589999997656679999999999999999 99999999999999999999999999996  4668888


Q ss_pred             EEEeCC
Q psy9827         126 IVQNRR  131 (627)
Q Consensus       126 ~v~r~~  131 (627)
                      .+.+..
T Consensus        85 ~lv~p~   90 (95)
T 3gge_A           85 KLIEPK   90 (95)
T ss_dssp             EEEEEC
T ss_pred             EEECcc
Confidence            887644

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.34  E-value=5.9e-12  Score=108.10  Aligned_cols=84  Identities=32%  Similarity=0.549  Sum_probs=74.3

Q ss_pred             CCceEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      +.++.+.+.+. ++|||++.++.       ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..
T Consensus         6 ~~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (101)
T 2jik_A            6 VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   85 (101)
T ss_dssp             EEEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC
T ss_pred             CccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            35677888876 58999999863       3589999999999999999 999999999999999999999999888888


Q ss_pred             CCeeEEEEEeCCc
Q psy9827         120 QDQIHLIVQNRRD  132 (627)
Q Consensus       120 g~~V~L~v~r~~~  132 (627)
                      ++.+.|+|.|++.
T Consensus        86 g~~v~l~v~R~~~   98 (101)
T 2jik_A           86 GYAVSLRVQHRLE   98 (101)
T ss_dssp             CSEEEEEEEEESC
T ss_pred             CCeEEEEEEeCCC
Confidence            8999999988653

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.33  E-value=6.3e-12  Score=108.15  Aligned_cols=83  Identities=29%  Similarity=0.532  Sum_probs=73.4

Q ss_pred             ceEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy9827          51 PRFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQD  121 (627)
Q Consensus        51 ~r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~  121 (627)
                      .+.+.+.+. ++|||++.++.       ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+.
T Consensus         5 ~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   84 (102)
T 2i1n_A            5 YEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGP   84 (102)
T ss_dssp             EEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCS
T ss_pred             EEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            456777775 48999999864       3589999999999999999 99999999999999999999999988888899


Q ss_pred             eeEEEEEeCCcc
Q psy9827         122 QIHLIVQNRRDE  133 (627)
Q Consensus       122 ~V~L~v~r~~~~  133 (627)
                      .+.|+|.|++..
T Consensus        85 ~v~l~v~R~~~~   96 (102)
T 2i1n_A           85 VVRLVVRRRQPP   96 (102)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEeCCCC
Confidence            999999986643

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.33  E-value=8e-12  Score=104.37  Aligned_cols=81  Identities=19%  Similarity=0.378  Sum_probs=70.4

Q ss_pred             ceEEEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          51 PRFITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        51 ~r~v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      +..+.+...++|||++.++.+  .+++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+.|+|.
T Consensus         4 ~~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~   83 (88)
T 2uzc_A            4 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQ   83 (88)
T ss_dssp             EEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEE
T ss_pred             EEEEEEcCCCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence            345666555689999998643  479999999999999999999999999999999999988888888877999999998


Q ss_pred             eCC
Q psy9827         129 NRR  131 (627)
Q Consensus       129 r~~  131 (627)
                      |++
T Consensus        84 R~g   86 (88)
T 2uzc_A           84 RES   86 (88)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            754

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.33  E-value=4.5e-12  Score=105.14  Aligned_cols=80  Identities=25%  Similarity=0.425  Sum_probs=70.1

Q ss_pred             eEEEeccCCceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          52 RFITFQKEGSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        52 r~v~l~k~g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      ..|.+...++|||++.++.  ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+.|+|.|
T Consensus         3 ~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R   82 (85)
T 1rgw_A            3 YSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQK   82 (85)
T ss_dssp             EEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEES
T ss_pred             EEEEEeCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEe
Confidence            4566766679999999874  34799999999999999999999999999999999999999998888778889999987


Q ss_pred             CC
Q psy9827         130 RR  131 (627)
Q Consensus       130 ~~  131 (627)
                      ++
T Consensus        83 ~~   84 (85)
T 1rgw_A           83 SK   84 (85)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.33  E-value=6.5e-12  Score=106.48  Aligned_cols=83  Identities=27%  Similarity=0.505  Sum_probs=73.2

Q ss_pred             CCceEEEeccC-CceeEEEEccCC-CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNK-VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~-~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      ..+|.+.+.+. ++|||++.++.. .+++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+.++
T Consensus         4 ~~~r~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~   83 (95)
T 3r68_A            4 HQPRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL   83 (95)
T ss_dssp             CCCEEEEEECBTTBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             CCcEEEEEecCCCcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            57889999886 489999987643 4899999999999999999999999999999999999999999999888889888


Q ss_pred             EEeCC
Q psy9827         127 VQNRR  131 (627)
Q Consensus       127 v~r~~  131 (627)
                      +.|+.
T Consensus        84 ~~r~~   88 (95)
T 3r68_A           84 VLDKE   88 (95)
T ss_dssp             EEECC
T ss_pred             EECCc
Confidence            87654

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.32  E-value=5.6e-12  Score=105.59  Aligned_cols=79  Identities=22%  Similarity=0.366  Sum_probs=69.4

Q ss_pred             EEEeccCCceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeC
Q psy9827          53 FITFQKEGSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNR  130 (627)
Q Consensus        53 ~v~l~k~g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~  130 (627)
                      .+.+...++|||++.++.  ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.|+|.|+
T Consensus         6 ~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   85 (89)
T 2q3g_A            6 KVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRA   85 (89)
T ss_dssp             EEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEE
T ss_pred             EEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence            455555678999999864  357999999999999999999999999999999999999999988888889999999875


Q ss_pred             C
Q psy9827         131 R  131 (627)
Q Consensus       131 ~  131 (627)
                      .
T Consensus        86 ~   86 (89)
T 2q3g_A           86 I   86 (89)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.32  E-value=3.3e-12  Score=115.13  Aligned_cols=93  Identities=24%  Similarity=0.396  Sum_probs=76.8

Q ss_pred             CccccccCCCCceEEEeccC-CceeEEEEccCC-----CCEEEEEeCCCChhhhc-CCCCCCEEEEECCEeCCCCCHHHH
Q psy9827          40 DLFSIFFVEPDPRFITFQKE-GSVGIRLTGGNK-----VGIFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMKGITREEA  112 (627)
Q Consensus        40 d~~~~~~~~~~~r~v~l~k~-g~lG~~i~g~~~-----~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~~~  112 (627)
                      +++......+..+.+.+.+. ++|||+|.++.+     .+++|..|.+||||+++ ||++||+|++|||.++.++++.++
T Consensus        19 ~~~~~~~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~   98 (130)
T 1i16_A           19 DVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA   98 (130)
T ss_dssp             SCCSCCSSSEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHH
T ss_pred             CccccCCCCCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            33444444456677788775 589999998754     57999999999999999 799999999999999999999999


Q ss_pred             HHHHhcCC-CeeEEEEEeCCc
Q psy9827         113 VLFLLSLQ-DQIHLIVQNRRD  132 (627)
Q Consensus       113 ~~~l~~~g-~~V~L~v~r~~~  132 (627)
                      +.+++..+ ..|.|+|.|+..
T Consensus        99 ~~~l~~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A           99 WNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             HHHHHTSCSSEEEEEEEEESS
T ss_pred             HHHHHhCCCceEEEEEEeCCC
Confidence            99999764 569999988643

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=8.6e-12  Score=110.20  Aligned_cols=84  Identities=23%  Similarity=0.438  Sum_probs=73.0

Q ss_pred             CceEEEeccC--------CceeEEEEccCC-------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHH
Q psy9827          50 DPRFITFQKE--------GSVGIRLTGGNK-------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV  113 (627)
Q Consensus        50 ~~r~v~l~k~--------g~lG~~i~g~~~-------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~  113 (627)
                      ..+.+.+.+.        ++|||+|.++.+       .|++|..|.++|||+++| |++||+|++|||.++.++++.+++
T Consensus        12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~   91 (117)
T 1ujd_A           12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence            3456666553        479999998753       279999999999999999 999999999999999999999999


Q ss_pred             HHHhcCCCeeEEEEEeCCcc
Q psy9827         114 LFLLSLQDQIHLIVQNRRDE  133 (627)
Q Consensus       114 ~~l~~~g~~V~L~v~r~~~~  133 (627)
                      .+++..+..|.|+|.|+...
T Consensus        92 ~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           92 SIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             HHHSCCSSCEEEEEESSCCC
T ss_pred             HHHhcCCCEEEEEEEECCcc
Confidence            99999999999999987654

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.32  E-value=1.2e-11  Score=105.22  Aligned_cols=81  Identities=32%  Similarity=0.580  Sum_probs=70.5

Q ss_pred             eEEEeccC-CceeEEEEccC--------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          52 RFITFQKE-GSVGIRLTGGN--------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~~--------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..+.+.+. ++|||++.++.        ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..
T Consensus         5 ~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   84 (97)
T 2w4f_A            5 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA   84 (97)
T ss_dssp             EEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             EEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCe
Confidence            34555554 69999999752        4689999999999999999999999999999999999999988888888999


Q ss_pred             eEEEEEeCCc
Q psy9827         123 IHLIVQNRRD  132 (627)
Q Consensus       123 V~L~v~r~~~  132 (627)
                      +.|+|.|++.
T Consensus        85 v~l~v~R~g~   94 (97)
T 2w4f_A           85 VQMRVWRERE   94 (97)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEEeCCc
Confidence            9999998664

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=110.16  Aligned_cols=97  Identities=23%  Similarity=0.410  Sum_probs=76.1

Q ss_pred             cCCCCCccccccCCCCceEEE--eccC-CceeEEEEccCC-----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCC
Q psy9827          35 QPGSPDLFSIFFVEPDPRFIT--FQKE-GSVGIRLTGGNK-----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK  105 (627)
Q Consensus        35 ~~~~~d~~~~~~~~~~~r~v~--l~k~-g~lG~~i~g~~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~  105 (627)
                      .....|+|..|+..+..+.+.  +.+. .+|||++.++..     .+++|..|.++|||+++| |++||+|++|||.++.
T Consensus        13 ~~~~~D~~~~y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~   92 (121)
T 2kom_A           13 GSENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLV   92 (121)
T ss_dssp             --------CCCCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECT
T ss_pred             cccccCccccccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcC
Confidence            456789999999988776654  4443 489999998752     689999999999999999 9999999999999999


Q ss_pred             CCCHHHHHHHHhc--CCCeeEEEEEeCC
Q psy9827         106 GITREEAVLFLLS--LQDQIHLIVQNRR  131 (627)
Q Consensus       106 ~~~~~~~~~~l~~--~g~~V~L~v~r~~  131 (627)
                      +++..++...++.  .+..|.|+|.|++
T Consensus        93 ~~~~~~~~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A           93 GKSQEEVVSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             TSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred             CCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence            9998888888875  3789999998754

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=6.3e-12  Score=111.58  Aligned_cols=92  Identities=30%  Similarity=0.441  Sum_probs=78.0

Q ss_pred             ccccccCCC--CceEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCH
Q psy9827          41 LFSIFFVEP--DPRFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR  109 (627)
Q Consensus        41 ~~~~~~~~~--~~r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~  109 (627)
                      +...+++.+  .++.|.|.+. ++|||++.++.       ..+++|..|.++|||+++| |++||+|++|||.++.++++
T Consensus         6 ~~~~g~~~~~~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~   85 (120)
T 2eno_A            6 SGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH   85 (120)
T ss_dssp             CCCSSCCCEEEEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCH
T ss_pred             cCcCCCCCCCCceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            334444444  5677888886 58999999863       4589999999999999999 99999999999999999999


Q ss_pred             HHHHHHHhcCCCeeEEEEEeCCc
Q psy9827         110 EEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus       110 ~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      .++...++..+..|.|+|.|+..
T Consensus        86 ~~~~~~~~~~g~~v~l~v~R~~~  108 (120)
T 2eno_A           86 QDAVDLFRNAGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HHHHHHHHHHCSEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEEEeCCc
Confidence            99998888778999999998654

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=8.3e-12  Score=104.43  Aligned_cols=81  Identities=22%  Similarity=0.312  Sum_probs=71.2

Q ss_pred             ceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhh-cCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          51 PRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        51 ~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~-aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      .|.|.+.|.  ++|||++.+....+++|..|.+||||++ +||++||+|++|||.++.++++.++..+++.....++|++
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v   81 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI   81 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEE
T ss_pred             eEEEEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEE
Confidence            477888886  4899999986556899999999999999 7899999999999999999999999999986656999998


Q ss_pred             EeCC
Q psy9827         128 QNRR  131 (627)
Q Consensus       128 ~r~~  131 (627)
                      .|..
T Consensus        82 ~r~~   85 (88)
T 1kwa_A           82 VPSY   85 (88)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8744

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=8.6e-12  Score=105.29  Aligned_cols=83  Identities=29%  Similarity=0.548  Sum_probs=73.9

Q ss_pred             CCceEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      +.+|.|.+.+. .+|||++.++.  ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+..+.
T Consensus         4 ~~~r~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   83 (93)
T 2dkr_A            4 GSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVK   83 (93)
T ss_dssp             SCSCEEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            56889999886 48999999863  4689999999999999996 99999999999999999999999988887788999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|++
T Consensus        84 l~v~r~~   90 (93)
T 2dkr_A           84 LVVRSGP   90 (93)
T ss_dssp             EEECCCC
T ss_pred             EEEEeCC
Confidence            9998765

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=104.43  Aligned_cols=83  Identities=30%  Similarity=0.464  Sum_probs=73.1

Q ss_pred             CCceEEEeccC--CceeEEEEccC-CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~-~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .+...+.+.+.  ++|||++.++. ..|++|..|.++|||+++| |++||+|++|||.++.+.++.++...++..++.+.
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   82 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVT   82 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            45677888774  58999999864 4689999999999999999 99999999999999999999999888888889999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|..
T Consensus        83 l~v~R~~   89 (92)
T 2qg1_A           83 LEVGRIS   89 (92)
T ss_dssp             EEEECCC
T ss_pred             EEEEccc
Confidence            9999754

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.31  E-value=9.9e-12  Score=108.16  Aligned_cols=84  Identities=21%  Similarity=0.387  Sum_probs=73.8

Q ss_pred             CCCceEEEeccCC-ceeEEEEccC------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          48 EPDPRFITFQKEG-SVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        48 ~~~~r~v~l~k~g-~lG~~i~g~~------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      .+..+.|.+.|.+ +|||++.++.      ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++..
T Consensus        13 ~~~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (108)
T 2d92_A           13 SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV   92 (108)
T ss_dssp             CSSCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred             CCceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4567889988864 8999999852      4679999999999999999 999999999999999999999999999874


Q ss_pred             -CCeeEEEEEeCC
Q psy9827         120 -QDQIHLIVQNRR  131 (627)
Q Consensus       120 -g~~V~L~v~r~~  131 (627)
                       +..|.|+|.|..
T Consensus        93 ~~~~v~l~v~R~~  105 (108)
T 2d92_A           93 PPGLVHLGICSGP  105 (108)
T ss_dssp             CSEEEEEEEECCC
T ss_pred             CCCeEEEEEEcCC
Confidence             678999998754

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.31  E-value=2.6e-12  Score=108.20  Aligned_cols=83  Identities=28%  Similarity=0.431  Sum_probs=72.4

Q ss_pred             CCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      +.+|.+.+.+. ++|||++.+.. ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.|+
T Consensus         2 ~~pr~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   81 (91)
T 2vsp_A            2 MKPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL   81 (91)
T ss_dssp             CCEEEEEEECBTTBTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEE
T ss_pred             CCcEEEEEEeCCCcccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            57899999886 48999998753 46899999999999999999999999999999999999999999998779999999


Q ss_pred             EEeCC
Q psy9827         127 VQNRR  131 (627)
Q Consensus       127 v~r~~  131 (627)
                      |.|..
T Consensus        82 v~r~~   86 (91)
T 2vsp_A           82 VCGKK   86 (91)
T ss_dssp             EEC--
T ss_pred             EEeCC
Confidence            99754

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.31  E-value=1.1e-11  Score=103.33  Aligned_cols=79  Identities=25%  Similarity=0.357  Sum_probs=69.0

Q ss_pred             EEEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeC
Q psy9827          53 FITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNR  130 (627)
Q Consensus        53 ~v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~  130 (627)
                      .+.+...++|||++.++.+  .|++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.|+|.|+
T Consensus         5 ~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   84 (87)
T 2pa1_A            5 TVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRI   84 (87)
T ss_dssp             EEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEEC
T ss_pred             EEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            3444445689999998754  58999999999999999999999999999999999999999998887778999999986


Q ss_pred             C
Q psy9827         131 R  131 (627)
Q Consensus       131 ~  131 (627)
                      .
T Consensus        85 ~   85 (87)
T 2pa1_A           85 T   85 (87)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.31  E-value=1.5e-11  Score=104.75  Aligned_cols=84  Identities=24%  Similarity=0.444  Sum_probs=73.5

Q ss_pred             CCceEEEeccCC-ceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          49 PDPRFITFQKEG-SVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        49 ~~~r~v~l~k~g-~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      +....+.+.+.+ +|||++.++.+  .+++|..|.+||||+++| |++||+|++|||.++.++++.++..+++..+..+.
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~   83 (97)
T 1n7e_A            4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT   83 (97)
T ss_dssp             CCEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             ceEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            455677787764 69999998753  689999999999999999 99999999999999999999999888888889999


Q ss_pred             EEEEeCCc
Q psy9827         125 LIVQNRRD  132 (627)
Q Consensus       125 L~v~r~~~  132 (627)
                      |+|.|...
T Consensus        84 l~v~R~~~   91 (97)
T 1n7e_A           84 LKIKKQTD   91 (97)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeCCC
Confidence            99998653

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=109.52  Aligned_cols=85  Identities=34%  Similarity=0.540  Sum_probs=76.7

Q ss_pred             CCCceEEEeccC--CceeEEEEccCC-----------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHH
Q psy9827          48 EPDPRFITFQKE--GSVGIRLTGGNK-----------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV  113 (627)
Q Consensus        48 ~~~~r~v~l~k~--g~lG~~i~g~~~-----------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~  113 (627)
                      ...++.+.+.+.  ++|||++.++.+           .|++|..|.++|||+++| |++||+|++|||.++.++++.+++
T Consensus        13 ~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~   92 (117)
T 2ehr_A           13 WGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAV   92 (117)
T ss_dssp             BCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHH
T ss_pred             CCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            457899999886  489999998753           589999999999999999 999999999999999999999999


Q ss_pred             HHHhcCCCeeEEEEEeCCc
Q psy9827         114 LFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus       114 ~~l~~~g~~V~L~v~r~~~  132 (627)
                      ..++..+..+.|+|.|...
T Consensus        93 ~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           93 EAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHHTSCSSEEEEECCBSC
T ss_pred             HHHHcCCCeEEEEEEECCC
Confidence            9999889999999987654

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=1.1e-11  Score=104.32  Aligned_cols=82  Identities=26%  Similarity=0.284  Sum_probs=71.7

Q ss_pred             CceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      .+|.+.+.+. ++|||++.+.  .+++|..|.+||||+++||++||+|++|||.++.++++.++...++..+..+.|+|.
T Consensus         3 ~~r~v~l~~~~~g~G~~l~~~--~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~   80 (91)
T 2f5y_A            3 RYRQITIPRGKDGFGFTICCD--SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW   80 (91)
T ss_dssp             EEEEEEEECBTTBTSEEEECS--SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEE
T ss_pred             ceEEEEEEeCCCCccEEEecC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            4678888876 5899999875  469999999999999999999999999999999999999998888887889999999


Q ss_pred             eCCcc
Q psy9827         129 NRRDE  133 (627)
Q Consensus       129 r~~~~  133 (627)
                      |+.+.
T Consensus        81 R~~~~   85 (91)
T 2f5y_A           81 RMVPQ   85 (91)
T ss_dssp             ECC--
T ss_pred             eCCCC
Confidence            86644

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=2.3e-11  Score=106.08  Aligned_cols=82  Identities=30%  Similarity=0.539  Sum_probs=71.1

Q ss_pred             eEEEecc-CCceeEEEEcc--------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          52 RFITFQK-EGSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        52 r~v~l~k-~g~lG~~i~g~--------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..+.+.+ .++|||++.++        ...|++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.
T Consensus        17 ~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   96 (110)
T 1x5q_A           17 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA   96 (110)
T ss_dssp             EEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             EEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCe
Confidence            3445555 46999999975        24689999999999999999999999999999999999999988888888999


Q ss_pred             eEEEEEeCCcc
Q psy9827         123 IHLIVQNRRDE  133 (627)
Q Consensus       123 V~L~v~r~~~~  133 (627)
                      |.|+|.|++..
T Consensus        97 v~l~v~R~g~~  107 (110)
T 1x5q_A           97 VQMRVWRESGP  107 (110)
T ss_dssp             EEEEEEECSSC
T ss_pred             EEEEEEECCcc
Confidence            99999987643

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.31  E-value=8.7e-12  Score=106.40  Aligned_cols=83  Identities=31%  Similarity=0.507  Sum_probs=72.2

Q ss_pred             CCceEEEeccC--CceeEEEEccC--------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN--------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL  117 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~--------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~  117 (627)
                      ..++.+.+.|.  ++|||++.++.        ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...++
T Consensus         4 e~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A            4 ELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             CEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ceEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            34577888873  48999998863        2389999999999999999 9999999999999999999999988888


Q ss_pred             cCCCeeEEEEEeCC
Q psy9827         118 SLQDQIHLIVQNRR  131 (627)
Q Consensus       118 ~~g~~V~L~v~r~~  131 (627)
                      ..+..+.|+|.|++
T Consensus        84 ~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           84 EADFKIELEIQTFD   97 (98)
T ss_dssp             HSCSEEEEEEEEC-
T ss_pred             cCCCeEEEEEEeCC
Confidence            88999999999854

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=1.3e-11  Score=108.92  Aligned_cols=90  Identities=30%  Similarity=0.492  Sum_probs=79.0

Q ss_pred             CCceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      .+++.|.+.+. .+|||++.++.+.|++|..|.++|||+++||++||+|++|||.++.++++.++...+...++.+.|+|
T Consensus        18 ~~~~~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v   97 (117)
T 1uit_A           18 EEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA   97 (117)
T ss_dssp             CCCEEEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEE
T ss_pred             CCCEEEEEEeCCCCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            35677888775 48999999887789999999999999999999999999999999999999998877778899999999


Q ss_pred             EeCCcccceee
Q psy9827         128 QNRRDEYEHVV  138 (627)
Q Consensus       128 ~r~~~~~~~~v  138 (627)
                      .|++..+....
T Consensus        98 ~r~~~~~~~~~  108 (117)
T 1uit_A           98 QYNPHVHQLSS  108 (117)
T ss_dssp             CCCSCCCCCCC
T ss_pred             EECCchhhhhh
Confidence            99877665443

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.30  E-value=1.8e-11  Score=102.96  Aligned_cols=81  Identities=22%  Similarity=0.496  Sum_probs=71.0

Q ss_pred             CceEEEeccC---CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          50 DPRFITFQKE---GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        50 ~~r~v~l~k~---g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      +.+.+.+.+.   ++|||++.++. ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.|
T Consensus         6 ~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l   85 (91)
T 1m5z_A            6 ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDL   85 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEE
T ss_pred             ceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            4566777764   37999999864 4689999999999999999999999999999999999999988888888999999


Q ss_pred             EEEeC
Q psy9827         126 IVQNR  130 (627)
Q Consensus       126 ~v~r~  130 (627)
                      +|.|+
T Consensus        86 ~v~R~   90 (91)
T 1m5z_A           86 VISRN   90 (91)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99874

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.30  E-value=1.4e-11  Score=104.46  Aligned_cols=82  Identities=23%  Similarity=0.390  Sum_probs=71.9

Q ss_pred             ceEEEeccC---CceeEEEEccC-CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          51 PRFITFQKE---GSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        51 ~r~v~l~k~---g~lG~~i~g~~-~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      ...+.|.|.   .+|||++.++. ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+..+.|
T Consensus         4 ~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l   83 (95)
T 2vwr_A            4 ILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNL   83 (95)
T ss_dssp             EEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEE
T ss_pred             EEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            345677764   37999998864 4689999999999999999 999999999999999999999999888888999999


Q ss_pred             EEEeCCc
Q psy9827         126 IVQNRRD  132 (627)
Q Consensus       126 ~v~r~~~  132 (627)
                      ++.|++.
T Consensus        84 ~v~R~~~   90 (95)
T 2vwr_A           84 TIARPGK   90 (95)
T ss_dssp             EEEEESC
T ss_pred             EEEcCCc
Confidence            9998654

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=8.5e-12  Score=105.68  Aligned_cols=82  Identities=29%  Similarity=0.404  Sum_probs=73.0

Q ss_pred             CceEEEeccCCceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          50 DPRFITFQKEGSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        50 ~~r~v~l~k~g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      .++.+.+.+..+|||++.++.  ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+.|+|
T Consensus         8 ~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v   87 (94)
T 2eeg_A            8 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSV   87 (94)
T ss_dssp             CCEEEEECCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEE
T ss_pred             ceEEEEEeCCCccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            567788877779999999875  357999999999999999999999999999999999999998888888888999999


Q ss_pred             EeCC
Q psy9827         128 QNRR  131 (627)
Q Consensus       128 ~r~~  131 (627)
                      .|+.
T Consensus        88 ~R~g   91 (94)
T 2eeg_A           88 SSGP   91 (94)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            8754

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.30  E-value=8.1e-12  Score=108.11  Aligned_cols=84  Identities=26%  Similarity=0.521  Sum_probs=73.6

Q ss_pred             CCceEEEeccC-CceeEEEEccCC--------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNK--------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS  118 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~--------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~  118 (627)
                      ++...+.+.+. .+|||++.++.+        .+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.
T Consensus         6 ~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   85 (105)
T 1wha_A            6 SGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             CEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             CeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            34456677775 489999998643        689999999999999999 99999999999999999999999999998


Q ss_pred             CCCeeEEEEEeCCc
Q psy9827         119 LQDQIHLIVQNRRD  132 (627)
Q Consensus       119 ~g~~V~L~v~r~~~  132 (627)
                      .+..|.|+|.|+.+
T Consensus        86 ~g~~v~l~v~R~~~   99 (105)
T 1wha_A           86 ASPTIALLLEREAG   99 (105)
T ss_dssp             CCSCEEEEEEECCC
T ss_pred             CCCeEEEEEEECCC
Confidence            89999999998654

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.29  E-value=1.1e-11  Score=105.57  Aligned_cols=81  Identities=30%  Similarity=0.582  Sum_probs=71.6

Q ss_pred             eEEEeccC-CceeEEEEccC------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          52 RFITFQKE-GSVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~~------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      ..+.+.+. ++|||++.++.      ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+..+
T Consensus         5 ~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   84 (97)
T 2jil_A            5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEA   84 (97)
T ss_dssp             EEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEE
T ss_pred             EEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            45667665 48999999874      3589999999999999999 9999999999999999999999998888889999


Q ss_pred             EEEEEeCCc
Q psy9827         124 HLIVQNRRD  132 (627)
Q Consensus       124 ~L~v~r~~~  132 (627)
                      .|+|.|+..
T Consensus        85 ~l~v~R~~~   93 (97)
T 2jil_A           85 ALLIEYDVS   93 (97)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEeCCC
Confidence            999998664

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.29  E-value=1.7e-11  Score=106.38  Aligned_cols=75  Identities=35%  Similarity=0.504  Sum_probs=68.2

Q ss_pred             CCceeEEEEccCC-------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeC
Q psy9827          59 EGSVGIRLTGGNK-------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNR  130 (627)
Q Consensus        59 ~g~lG~~i~g~~~-------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~  130 (627)
                      .++|||++.+|.+       .|++|..|.+||||+++| |++||+|++|||.++.++++.++...++..+..|.|+|.|+
T Consensus        12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   91 (106)
T 4amh_A           12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKP   91 (106)
T ss_dssp             CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECC
T ss_pred             CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeC
Confidence            4689999999843       389999999999999999 99999999999999999999999999998899999999987


Q ss_pred             Ccc
Q psy9827         131 RDE  133 (627)
Q Consensus       131 ~~~  133 (627)
                      ...
T Consensus        92 ~~~   94 (106)
T 4amh_A           92 GSG   94 (106)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            643

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.29  E-value=1.8e-11  Score=102.03  Aligned_cols=80  Identities=35%  Similarity=0.590  Sum_probs=70.9

Q ss_pred             CceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhh-cCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~-aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      +++.+.+.+.  .+|||++.++.+  .+++|..|.+||||++ +||++||+|++|||.++.++++.++...++.+++.+.
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   81 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   81 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            5678888875  489999998643  4699999999999999 6999999999999999999999999999998888999


Q ss_pred             EEEEe
Q psy9827         125 LIVQN  129 (627)
Q Consensus       125 L~v~r  129 (627)
                      |+|.+
T Consensus        82 l~v~~   86 (87)
T 4e34_A           82 FEVVY   86 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98874

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.29  E-value=5.7e-12  Score=113.07  Aligned_cols=95  Identities=22%  Similarity=0.369  Sum_probs=79.3

Q ss_pred             CCCccccccCCCCceE----EEeccC--CceeEEEEccCC------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeC
Q psy9827          38 SPDLFSIFFVEPDPRF----ITFQKE--GSVGIRLTGGNK------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM  104 (627)
Q Consensus        38 ~~d~~~~~~~~~~~r~----v~l~k~--g~lG~~i~g~~~------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v  104 (627)
                      ..+++..++.....+.    +.+.+.  ++|||++.++.+      .+++|..|.+||||+++| |++||+|++|||.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v   88 (127)
T 1wg6_A            9 KGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETL   88 (127)
T ss_dssp             SSCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEES
T ss_pred             CCCCcccccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEEC
Confidence            3578888888776542    344432  489999998753      489999999999999999 999999999999999


Q ss_pred             CCCCHHHHHHHHhcC-------CCeeEEEEEeCCc
Q psy9827         105 KGITREEAVLFLLSL-------QDQIHLIVQNRRD  132 (627)
Q Consensus       105 ~~~~~~~~~~~l~~~-------g~~V~L~v~r~~~  132 (627)
                      .++++.+++.+++..       +..|.|+|.|+..
T Consensus        89 ~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A           89 LGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred             CCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence            999999999998864       7899999998654

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.29  E-value=2.1e-11  Score=103.72  Aligned_cols=81  Identities=28%  Similarity=0.484  Sum_probs=71.1

Q ss_pred             CCceEEEeccC--CceeEEEEc-------cC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy9827          49 PDPRFITFQKE--GSVGIRLTG-------GN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL  117 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g-------~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~  117 (627)
                      +.++.|.+.|.  ++|||++.+       +.  ..+++|..|.++|||+++||++||+|++|||.++.++++.++...++
T Consensus         3 ~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   82 (96)
T 2ego_A            3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIK   82 (96)
T ss_dssp             CCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57888999886  489999997       22  24799999999999999999999999999999999999999998888


Q ss_pred             cCCCeeEEEEEe
Q psy9827         118 SLQDQIHLIVQN  129 (627)
Q Consensus       118 ~~g~~V~L~v~r  129 (627)
                      ..++.+.|+|.+
T Consensus        83 ~~~~~v~l~v~~   94 (96)
T 2ego_A           83 ASGNVLRLETLY   94 (96)
T ss_dssp             HTTTEEEEEEEC
T ss_pred             hCCCeEEEEEEE
Confidence            778899999875

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.29  E-value=1e-11  Score=107.12  Aligned_cols=89  Identities=18%  Similarity=0.325  Sum_probs=75.6

Q ss_pred             CCceEEEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          49 PDPRFITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        49 ~~~r~v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      .+...+.+....+|||++.++.+  .+++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.|+
T Consensus         4 g~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   83 (103)
T 1wf7_A            4 GSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT   83 (103)
T ss_dssp             CCCEEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEE
T ss_pred             CCEEEEEEeCCCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            35566777766789999998753  4689999999999999999999999999999999999999888888778999999


Q ss_pred             EEeCCccccee
Q psy9827         127 VQNRRDEYEHV  137 (627)
Q Consensus       127 v~r~~~~~~~~  137 (627)
                      |.|+.......
T Consensus        84 v~R~g~~~~~~   94 (103)
T 1wf7_A           84 LQRASAAAKSE   94 (103)
T ss_dssp             ECCCSCCCCCC
T ss_pred             EEeCCCcCCCC
Confidence            99877654443

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.28  E-value=1.9e-11  Score=103.71  Aligned_cols=79  Identities=38%  Similarity=0.600  Sum_probs=70.2

Q ss_pred             eEEEeccCCceeEEEEccC----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy9827          52 RFITFQKEGSVGIRLTGGN----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQD  121 (627)
Q Consensus        52 r~v~l~k~g~lG~~i~g~~----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~  121 (627)
                      ..+.+.+..+|||++.++.          ..|++|..|.++|||++ ||++||+|++|||.++.++++.++...++..+.
T Consensus         5 ~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   83 (95)
T 1mfg_A            5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQN   83 (95)
T ss_dssp             EEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCC
Confidence            3466777779999999863          35899999999999999 999999999999999999999999988888899


Q ss_pred             eeEEEEEeCC
Q psy9827         122 QIHLIVQNRR  131 (627)
Q Consensus       122 ~V~L~v~r~~  131 (627)
                      .+.|+|.|+.
T Consensus        84 ~v~l~v~R~~   93 (95)
T 1mfg_A           84 TVELIIVREV   93 (95)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEeCC
Confidence            9999999854

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.28  E-value=2.3e-12  Score=135.44  Aligned_cols=132  Identities=24%  Similarity=0.307  Sum_probs=102.1

Q ss_pred             cccccccCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCceEEE----ec-----cCCceeEEEEcc
Q psy9827           7 RFITFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGG   69 (627)
Q Consensus         7 ~~~~~~~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~   69 (627)
                      .|..+.+++ ++|.++|+       |++|||| +++....++..+++|++|......    +.     ..+.||+++...
T Consensus       171 ~~~~~iq~da~i~~GnSGGPLvn~~G~vVGI~-s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~~~~lGv~~~~~  249 (345)
T 3stj_A          171 GLENFIQTDASINRGNSGGALLNLNGELIGIN-TAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM  249 (345)
T ss_dssp             SSCCEEEECSCCCTTCTTCEEECTTSCEEEEE-EEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHSSCCCEECCEEEEEC
T ss_pred             CccCEEEEecccCCCcCccceeCCCCEEEEEE-eccccCCCCcceeEEEEehHHHHHHHHHHHhcccccccccceeeEee
Confidence            355566666 88988875       6788999 888888778889999999543221    11     235899998864


Q ss_pred             C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .           ..|++|..|.+||||+++||++||+|++|||..+.++.+..........|+.|.|+|.|++......+
T Consensus       250 ~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  329 (345)
T 3stj_A          250 SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEV  329 (345)
T ss_dssp             CHHHHHHTTCSCCSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEE
T ss_pred             cHHHHHhcCCCCCceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            2           36899999999999999999999999999999999776555444334689999999999887665554


Q ss_pred             e
Q psy9827         139 A  139 (627)
Q Consensus       139 ~  139 (627)
                      .
T Consensus       330 ~  330 (345)
T 3stj_A          330 T  330 (345)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=1.7e-11  Score=106.91  Aligned_cols=87  Identities=25%  Similarity=0.434  Sum_probs=75.6

Q ss_pred             CCceEEEeccC-CceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQD  121 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~  121 (627)
                      .+.+.+.+.+. .+|||++.++.     ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+.
T Consensus         7 ~~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   86 (110)
T 1um1_A            7 GYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK   86 (110)
T ss_dssp             CCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCS
T ss_pred             CcEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            35566777775 58999999863     4589999999999999999 99999999999999999999999999998899


Q ss_pred             eeEEEEEeCCcccc
Q psy9827         122 QIHLIVQNRRDEYE  135 (627)
Q Consensus       122 ~V~L~v~r~~~~~~  135 (627)
                      .+.|+|.|......
T Consensus        87 ~v~l~v~R~~~~~~  100 (110)
T 1um1_A           87 KMRFLVAKSDVETA  100 (110)
T ss_dssp             EEEEEEECCCHHHH
T ss_pred             eEEEEEEeCCccee
Confidence            99999998765443

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.28  E-value=1.7e-11  Score=108.55  Aligned_cols=87  Identities=33%  Similarity=0.670  Sum_probs=77.0

Q ss_pred             CCCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .+.++.+.+.+. .+|||++.++. ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+..+.
T Consensus        12 ~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   91 (119)
T 1tp5_A           12 PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT   91 (119)
T ss_dssp             CCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEE
T ss_pred             CCccEEEEEEECCCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            357888999886 48999999874 3689999999999999999 99999999999999999999998888888899999


Q ss_pred             EEEEeCCccc
Q psy9827         125 LIVQNRRDEY  134 (627)
Q Consensus       125 L~v~r~~~~~  134 (627)
                      |++.|++..+
T Consensus        92 l~v~r~~~~~  101 (119)
T 1tp5_A           92 IIAQYKPEEY  101 (119)
T ss_dssp             EEEEECHHHH
T ss_pred             EEEEECCchh
Confidence            9999876543

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=1e-11  Score=107.91  Aligned_cols=82  Identities=27%  Similarity=0.543  Sum_probs=71.8

Q ss_pred             ceEEEeccC-CceeEEEEc---c-----CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          51 PRFITFQKE-GSVGIRLTG---G-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        51 ~r~v~l~k~-g~lG~~i~g---~-----~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      .+.+.+.+. .+|||++.+   +     ...|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+
T Consensus        10 ~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   89 (107)
T 1wf8_A           10 LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK   89 (107)
T ss_dssp             EEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC
T ss_pred             EEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            355667665 489999998   2     24589999999999999999 9999999999999999999999999998889


Q ss_pred             CeeEEEEEeCCc
Q psy9827         121 DQIHLIVQNRRD  132 (627)
Q Consensus       121 ~~V~L~v~r~~~  132 (627)
                      +.|.|+|.|...
T Consensus        90 ~~v~l~v~R~~~  101 (107)
T 1wf8_A           90 GNVRFVIGREKP  101 (107)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CeEEEEEEeCCC
Confidence            999999998654

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.27  E-value=3.1e-11  Score=105.48  Aligned_cols=91  Identities=25%  Similarity=0.487  Sum_probs=75.1

Q ss_pred             ccccCCCCceEEE--eccC-CceeEEEEccCC-----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHH
Q psy9827          43 SIFFVEPDPRFIT--FQKE-GSVGIRLTGGNK-----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV  113 (627)
Q Consensus        43 ~~~~~~~~~r~v~--l~k~-g~lG~~i~g~~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~  113 (627)
                      +.|+...+.+.+.  +.+. .+|||++.+..+     .|++|..|.++|||+++| |++||+|++|||.++.++++.++.
T Consensus         2 s~y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~   81 (111)
T 2koj_A            2 SVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVV   81 (111)
T ss_dssp             CCCCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHH
T ss_pred             CcccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4566666665544  4444 489999998753     689999999999999999 999999999999999999999998


Q ss_pred             HHHhcC--CCeeEEEEEeCCcc
Q psy9827         114 LFLLSL--QDQIHLIVQNRRDE  133 (627)
Q Consensus       114 ~~l~~~--g~~V~L~v~r~~~~  133 (627)
                      .+++..  +..|.|+|.|+...
T Consensus        82 ~~l~~~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           82 SLLRSTKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             HHHHHCCCSSEEEEEEEECCCC
T ss_pred             HHHHhCCCCCeEEEEEEeCCCC
Confidence            888753  88999999986643

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.27  E-value=1.5e-11  Score=105.83  Aligned_cols=85  Identities=25%  Similarity=0.458  Sum_probs=75.3

Q ss_pred             CCCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      .+.+|.+.+.+. .+|||++.+.. ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.|
T Consensus         4 ~~~~r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l   83 (102)
T 2d90_A            4 GSSGRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL   83 (102)
T ss_dssp             CSSSEEEEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEE
T ss_pred             CCCCEEEEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            467899999886 48999999753 4689999999999999999999999999999999999988888888878999999


Q ss_pred             EEEeCCc
Q psy9827         126 IVQNRRD  132 (627)
Q Consensus       126 ~v~r~~~  132 (627)
                      ++.|+..
T Consensus        84 ~v~r~~~   90 (102)
T 2d90_A           84 LVLDKEA   90 (102)
T ss_dssp             EECSTTC
T ss_pred             EEEECCC
Confidence            9987543

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.27  E-value=2.7e-11  Score=102.39  Aligned_cols=82  Identities=24%  Similarity=0.390  Sum_probs=71.3

Q ss_pred             CCCceEEEeccCC-ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          48 EPDPRFITFQKEG-SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        48 ~~~~r~v~l~k~g-~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      .+.+|.+.+.+.+ +|||++.+.  .+++|..|.++|||+++||++||+|++|||.++.++++.++...++ .++.|.|+
T Consensus         6 ~~~~r~v~l~~~~~~~G~~l~~~--~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~   82 (93)
T 2dls_A            6 SGVQRCVIIQKDQHGFGFTVSGD--RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALT   82 (93)
T ss_dssp             CCCEEEEEEECSSSSCCEEEECS--SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEE
T ss_pred             CCCCEEEEEEeCCCceeEEEeCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEE
Confidence            3567888888864 899999864  5899999999999999999999999999999999999988777666 68999999


Q ss_pred             EEeCCc
Q psy9827         127 VQNRRD  132 (627)
Q Consensus       127 v~r~~~  132 (627)
                      |.|+..
T Consensus        83 v~R~~~   88 (93)
T 2dls_A           83 LLGSSS   88 (93)
T ss_dssp             EECCCC
T ss_pred             EEECCC
Confidence            998653

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.27  E-value=2.5e-11  Score=102.47  Aligned_cols=82  Identities=21%  Similarity=0.337  Sum_probs=72.5

Q ss_pred             CceEEEeccCC-ceeEEEEccC-CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          50 DPRFITFQKEG-SVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        50 ~~r~v~l~k~g-~lG~~i~g~~-~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      ..+.+.+.|.+ +|||++.+.. ..+++|..|.+||||+++| |++||+|++|||.++.+.++.++..+++..+..++|+
T Consensus         4 ~~r~v~l~k~~~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   83 (93)
T 3o46_A            4 SVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK   83 (93)
T ss_dssp             CCEEEEEEESSSCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEE
T ss_pred             cEEEEEEEeCCCCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            46788888865 8999999863 3689999999999999999 9999999999999999999999999998887899999


Q ss_pred             EEeCC
Q psy9827         127 VQNRR  131 (627)
Q Consensus       127 v~r~~  131 (627)
                      |.+..
T Consensus        84 v~~~~   88 (93)
T 3o46_A           84 IIPGS   88 (93)
T ss_dssp             EECC-
T ss_pred             EEeCC
Confidence            98643

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.27  E-value=4.9e-12  Score=104.46  Aligned_cols=80  Identities=28%  Similarity=0.536  Sum_probs=71.2

Q ss_pred             CCceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      |.++.+.+.+. .+|||++.+.  .+++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.|+|
T Consensus         1 ~~~r~v~l~~~~~g~G~~~~~~--~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v   78 (83)
T 2kv8_A            1 PRVRSVEVARGRAGYGFTLSGQ--APCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVI   78 (83)
T ss_dssp             CCEEEEEECCCSSCCSCBCCCS--SSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEE
T ss_pred             CCcEEEEEEeCCCcccEEEEcC--CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence            45788999886 5899988765  47999999999999999999999999999999999999999988887778899999


Q ss_pred             EeC
Q psy9827         128 QNR  130 (627)
Q Consensus       128 ~r~  130 (627)
                      .|+
T Consensus        79 ~R~   81 (83)
T 2kv8_A           79 AEG   81 (83)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            875

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.27  E-value=1.4e-11  Score=103.42  Aligned_cols=80  Identities=24%  Similarity=0.446  Sum_probs=69.4

Q ss_pred             ceEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeE
Q psy9827          51 PRFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIH  124 (627)
Q Consensus        51 ~r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~  124 (627)
                      ++.+.+.+. .+|||++.++.  ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++..  +..|.
T Consensus         3 ~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~   82 (90)
T 2q9v_A            3 EQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVN   82 (90)
T ss_dssp             EEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEE
T ss_pred             cEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEE
Confidence            467777775 58999999873  3579999999999999999 999999999999999999999998888765  34899


Q ss_pred             EEEEeC
Q psy9827         125 LIVQNR  130 (627)
Q Consensus       125 L~v~r~  130 (627)
                      |+|.|.
T Consensus        83 l~v~R~   88 (90)
T 2q9v_A           83 LTVRQT   88 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999874

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.27  E-value=1.9e-11  Score=109.71  Aligned_cols=85  Identities=21%  Similarity=0.426  Sum_probs=75.0

Q ss_pred             CCCCceEEEeccC---CceeEEEEccCC-----------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHH
Q psy9827          47 VEPDPRFITFQKE---GSVGIRLTGGNK-----------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE  111 (627)
Q Consensus        47 ~~~~~r~v~l~k~---g~lG~~i~g~~~-----------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~  111 (627)
                      ....++.+.+.+.   ++|||++.++.+           .|++|..|.+||||+++| |++||+|++|||.++.+.++.+
T Consensus        26 ~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~  105 (128)
T 1nf3_C           26 LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQ  105 (128)
T ss_dssp             SCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHH
T ss_pred             CCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            3457788999886   489999997632           479999999999999999 9999999999999999999999


Q ss_pred             HHHHHhcCCCeeEEEEEeCC
Q psy9827         112 AVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus       112 ~~~~l~~~g~~V~L~v~r~~  131 (627)
                      +..+++..+..|.|+|.|..
T Consensus       106 ~~~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C          106 VTDMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             HHHHHHHTTTSEEEEEECCC
T ss_pred             HHHHHHcCCCeEEEEEEECC
Confidence            99999888889999999754

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.27  E-value=1.3e-11  Score=107.51  Aligned_cols=83  Identities=28%  Similarity=0.544  Sum_probs=72.5

Q ss_pred             CceEEEeccC--CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC---
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL---  119 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~---  119 (627)
                      +++.+.|.+.  .+|||++.++.    ..|++|..|.++|||+++| |++||+|++|||.++.++++.+++..++..   
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   84 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK   84 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC
Confidence            6778888864  58999999863    4689999999999999999 999999999999999999999999988854   


Q ss_pred             CCeeEEEEEeCCc
Q psy9827         120 QDQIHLIVQNRRD  132 (627)
Q Consensus       120 g~~V~L~v~r~~~  132 (627)
                      +..|.|+|.|...
T Consensus        85 ~~~v~l~v~R~~~   97 (108)
T 3cbz_A           85 PGPIVLTVAKSGG   97 (108)
T ss_dssp             SSCEEEEEECCCC
T ss_pred             CCeEEEEEEeCCC
Confidence            5679999998643

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.26  E-value=1.5e-11  Score=107.91  Aligned_cols=86  Identities=26%  Similarity=0.478  Sum_probs=74.3

Q ss_pred             ceEEEeccC-CceeEEEEc---c-----CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          51 PRFITFQKE-GSVGIRLTG---G-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        51 ~r~v~l~k~-g~lG~~i~g---~-----~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      ...+.+.+. .+|||++.+   +     ...|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+
T Consensus         5 ~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   84 (113)
T 2g5m_B            5 LFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK   84 (113)
T ss_dssp             EEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             EEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            345667665 489999998   2     24689999999999999999 9999999999999999999999999998889


Q ss_pred             CeeEEEEEeCCcccce
Q psy9827         121 DQIHLIVQNRRDEYEH  136 (627)
Q Consensus       121 ~~V~L~v~r~~~~~~~  136 (627)
                      +.+.|+|.|++.....
T Consensus        85 ~~v~l~v~R~~~~~~~  100 (113)
T 2g5m_B           85 GRVRFMIGRERPGEQS  100 (113)
T ss_dssp             SSCEEEEEECCCCTTS
T ss_pred             CeEEEEEEeCCCCCcc
Confidence            9999999997765443

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.26  E-value=1.3e-11  Score=110.79  Aligned_cols=85  Identities=28%  Similarity=0.485  Sum_probs=74.6

Q ss_pred             CCceEEEeccC--CceeEEEEccCC-----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCC-CCCHHHHHHHHhcC
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNK-----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK-GITREEAVLFLLSL  119 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~-~~~~~~~~~~l~~~  119 (627)
                      ...+.|.+.+.  ++|||++.++.+     .|++|..|.++|||+++| |++||+|++|||.++. ++++.+++.+++..
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~  103 (128)
T 2db5_A           24 RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT  103 (128)
T ss_dssp             CEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC
T ss_pred             CceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            35567788776  489999988643     389999999999999999 9999999999999997 99999999999988


Q ss_pred             CCeeEEEEEeCCcc
Q psy9827         120 QDQIHLIVQNRRDE  133 (627)
Q Consensus       120 g~~V~L~v~r~~~~  133 (627)
                      +..|.|+|.|+...
T Consensus       104 ~~~v~l~v~r~~~~  117 (128)
T 2db5_A          104 TGSLRLIVAREPVH  117 (128)
T ss_dssp             CSEEEEEEEECCCS
T ss_pred             CCeEEEEEEcCCCC
Confidence            99999999987543

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.26  E-value=3.3e-11  Score=107.37  Aligned_cols=92  Identities=33%  Similarity=0.584  Sum_probs=72.6

Q ss_pred             CCCccccccCCCCceEEEeccC--CceeEEEEccC-----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEe
Q psy9827          38 SPDLFSIFFVEPDPRFITFQKE--GSVGIRLTGGN-----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD  103 (627)
Q Consensus        38 ~~d~~~~~~~~~~~r~v~l~k~--g~lG~~i~g~~-----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~  103 (627)
                      ..|.|+.|+   .++.+.+.+.  ++|||++.++.           ..|++|..|.++|||+++| |++||+|++|||.+
T Consensus        15 ~~d~~s~~~---~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~   91 (123)
T 2iwq_A           15 TENLYFQSM---QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD   91 (123)
T ss_dssp             --------C---CCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE
T ss_pred             cccCCcccC---CCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEE
Confidence            345666553   4577887764  58999998753           2589999999999999999 99999999999999


Q ss_pred             CCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827         104 MKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus       104 v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      +.+++..++...++..+..+.|+|.|.++
T Consensus        92 v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A           92 LRDASHEQAVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             CTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            99999999999998778899999997553

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.26  E-value=3.8e-11  Score=104.59  Aligned_cols=81  Identities=20%  Similarity=0.285  Sum_probs=71.0

Q ss_pred             CceEEEeccC--CceeEEEEccCCC--------------CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHH
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNKV--------------GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV  113 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~~--------------gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~  113 (627)
                      ..+.+.+.+.  ++|||++.++...              |++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~   86 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   86 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4577777653  5899999987542              79999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeeEEEEEeC
Q psy9827         114 LFLLSLQDQIHLIVQNR  130 (627)
Q Consensus       114 ~~l~~~g~~V~L~v~r~  130 (627)
                      ..++..+..+.|+|.+.
T Consensus        87 ~~l~~~~~~v~l~v~~~  103 (109)
T 1q3o_A           87 NMIRQGGNTLMVKVVMV  103 (109)
T ss_dssp             HHHHHTTTEEEEEEEEE
T ss_pred             HHHHhCCCEEEEEEEEC
Confidence            88887788999998864

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.26  E-value=2.8e-11  Score=105.21  Aligned_cols=81  Identities=32%  Similarity=0.642  Sum_probs=69.5

Q ss_pred             eEEEec--cC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          52 RFITFQ--KE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        52 r~v~l~--k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      ..+.+.  +. ++|||++.++.       ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+
T Consensus        14 ~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   93 (108)
T 2jre_A           14 YSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAG   93 (108)
T ss_dssp             EEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHC
T ss_pred             EEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            445563  33 48999999862       3589999999999999999 9999999999999999999999888888788


Q ss_pred             CeeEEEEEeCCc
Q psy9827         121 DQIHLIVQNRRD  132 (627)
Q Consensus       121 ~~V~L~v~r~~~  132 (627)
                      ..|.|+|.|++.
T Consensus        94 ~~v~l~v~R~~~  105 (108)
T 2jre_A           94 NPVRLLLIRRLP  105 (108)
T ss_dssp             SEEEEEEEECCC
T ss_pred             CeEEEEEEeCCc
Confidence            999999998664

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.26  E-value=2.2e-11  Score=103.63  Aligned_cols=80  Identities=26%  Similarity=0.321  Sum_probs=70.6

Q ss_pred             CceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      .++.+.+.|.  ++||+++....+.|++|..|.++|||+++| |++||+|++|||.++.+++..++...++..++.++|+
T Consensus        12 ~~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~   91 (97)
T 2ejy_A           12 MVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLK   91 (97)
T ss_dssp             -CEEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEE
T ss_pred             ccEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5678888774  489999997656799999999999999999 9999999999999999988889888888778899998


Q ss_pred             EEe
Q psy9827         127 VQN  129 (627)
Q Consensus       127 v~r  129 (627)
                      |.+
T Consensus        92 V~~   94 (97)
T 2ejy_A           92 VIP   94 (97)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            885

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=4.2e-11  Score=103.11  Aligned_cols=83  Identities=35%  Similarity=0.622  Sum_probs=71.0

Q ss_pred             CceEEEeccC--CceeEEEEccCC-----------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHH
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNK-----------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLF  115 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~-----------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~  115 (627)
                      +++.+.+.+.  ++|||++.++.+           .|++|..|.++|||+++| |++||+|++|||.++.++++.++...
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   83 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4677777764  589999988643           589999999999999999 99999999999999999999999999


Q ss_pred             HhcCCCeeEEEEEeCCc
Q psy9827         116 LLSLQDQIHLIVQNRRD  132 (627)
Q Consensus       116 l~~~g~~V~L~v~r~~~  132 (627)
                      ++..++.+.|+|.|.+.
T Consensus        84 l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           84 IRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             HHTCCSSEEEEEECCCC
T ss_pred             HHhCCCcEEEEEEECCC
Confidence            98777799999998553

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.25  E-value=1.1e-11  Score=109.45  Aligned_cols=85  Identities=28%  Similarity=0.485  Sum_probs=75.7

Q ss_pred             CCceEEEeccC--CceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCC-CCCHHHHHHHHhcC
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK-GITREEAVLFLLSL  119 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~-~~~~~~~~~~l~~~  119 (627)
                      ..++.+.+.+.  ++|||++.++.     ..|++|..|.++|||+++| |++||+|++|||.++. ++++.++...++..
T Consensus        19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~   98 (117)
T 2o2t_A           19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA   98 (117)
T ss_dssp             SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC
T ss_pred             CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            46788888886  58999999864     3589999999999999999 9999999999999998 99999999999888


Q ss_pred             CCeeEEEEEeCCcc
Q psy9827         120 QDQIHLIVQNRRDE  133 (627)
Q Consensus       120 g~~V~L~v~r~~~~  133 (627)
                      ++.|.|+|.|++..
T Consensus        99 ~~~v~l~v~R~~~~  112 (117)
T 2o2t_A           99 KDTVQLVIARGSLP  112 (117)
T ss_dssp             CSEEEEEEESSCCG
T ss_pred             CCEEEEEEEeCCcc
Confidence            99999999987654

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.3e-11  Score=106.94  Aligned_cols=86  Identities=23%  Similarity=0.412  Sum_probs=75.7

Q ss_pred             CCCCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          47 VEPDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        47 ~~~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      +.+.+|.+.+.|. ++|||++.+.. ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.
T Consensus         5 ~~~~~r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   84 (106)
T 2eei_A            5 SSGQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVM   84 (106)
T ss_dssp             CCSSSEEEEEECCSSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEE
T ss_pred             CCCCCEEEEEEECCCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            3568899999886 48999998764 468999999999999999999999999999999999999999888887788999


Q ss_pred             EEEEeCCc
Q psy9827         125 LIVQNRRD  132 (627)
Q Consensus       125 L~v~r~~~  132 (627)
                      |++.|...
T Consensus        85 l~v~r~~~   92 (106)
T 2eei_A           85 FLLVDKET   92 (106)
T ss_dssp             EEECCTTT
T ss_pred             EEEEcCch
Confidence            99987553

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.24  E-value=5.2e-11  Score=101.24  Aligned_cols=80  Identities=19%  Similarity=0.333  Sum_probs=69.4

Q ss_pred             ceEEEecc-C-CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          51 PRFITFQK-E-GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        51 ~r~v~l~k-~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      ...+.+.+ . .+|||++.+ ...|++|..|.+||||+++| |++||+|++|||.++.++++.++...++..+..|.|+|
T Consensus         9 ~~~v~l~~~~~~glG~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v   87 (96)
T 2qkv_A            9 KFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEV   87 (96)
T ss_dssp             CEEEEEECBTTBCCCEEEEE-CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             eEEEEEEeCCCCCccEEEEe-CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEE
Confidence            34556654 3 489999887 35689999999999999999 99999999999999999999999999998888999999


Q ss_pred             EeCC
Q psy9827         128 QNRR  131 (627)
Q Consensus       128 ~r~~  131 (627)
                      .|..
T Consensus        88 ~R~~   91 (96)
T 2qkv_A           88 TRPK   91 (96)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            9854

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.24  E-value=2.7e-11  Score=108.11  Aligned_cols=85  Identities=24%  Similarity=0.547  Sum_probs=74.7

Q ss_pred             CceEEEeccC-CceeEEEEccCC---CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNK---VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      ..+.+.+.+. ++|||++.++.+   .|++|..|.++|||+++| |++||+|++|||.++.++++.+++..++..+..|.
T Consensus        25 ~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~  104 (124)
T 2daz_A           25 ELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVK  104 (124)
T ss_dssp             EEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEE
T ss_pred             ceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4466777776 489999998743   589999999999999999 99999999999999999999999998988888999


Q ss_pred             EEEEeCCccc
Q psy9827         125 LIVQNRRDEY  134 (627)
Q Consensus       125 L~v~r~~~~~  134 (627)
                      |+|.|+...+
T Consensus       105 l~v~R~~~~~  114 (124)
T 2daz_A          105 LVFIRNEDAV  114 (124)
T ss_dssp             EEEEECTTHH
T ss_pred             EEEEeCCCcc
Confidence            9999876543

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=8.7e-11  Score=104.66  Aligned_cols=81  Identities=25%  Similarity=0.424  Sum_probs=70.8

Q ss_pred             eEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeeEE
Q psy9827          52 RFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQIHL  125 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~V~L  125 (627)
                      ..+.+.+. .+|||++.++.  ..|++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.  .+..|.|
T Consensus        21 ~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l  100 (123)
T 1ueq_A           21 LSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNL  100 (123)
T ss_dssp             EEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEE
T ss_pred             EEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence            44666665 48999999864  4579999999999999999 99999999999999999999999998886  5799999


Q ss_pred             EEEeCCc
Q psy9827         126 IVQNRRD  132 (627)
Q Consensus       126 ~v~r~~~  132 (627)
                      +|.|+..
T Consensus       101 ~v~R~~~  107 (123)
T 1ueq_A          101 VLCRGYP  107 (123)
T ss_dssp             EEEESCC
T ss_pred             EEEeCCC
Confidence            9998653

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.24  E-value=5.5e-11  Score=98.53  Aligned_cols=77  Identities=25%  Similarity=0.423  Sum_probs=66.1

Q ss_pred             EEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEEE
Q psy9827          53 FITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHLI  126 (627)
Q Consensus        53 ~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L~  126 (627)
                      .+.+.+. .+|||++.++.  ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++..  ++.+.|+
T Consensus         3 ~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~   82 (85)
T 2i04_A            3 HTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE   82 (85)
T ss_dssp             EEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEE
T ss_pred             EEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence            4556665 48999999853  3579999999999999999 999999999999999999999988888754  7899998


Q ss_pred             EEe
Q psy9827         127 VQN  129 (627)
Q Consensus       127 v~r  129 (627)
                      |.|
T Consensus        83 v~R   85 (85)
T 2i04_A           83 LCR   85 (85)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            864

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.24  E-value=3.6e-11  Score=104.28  Aligned_cols=82  Identities=23%  Similarity=0.424  Sum_probs=72.6

Q ss_pred             CceEEEeccC--CceeEEEEccCC--------CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNK--------VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~--------~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      +++.+.+.+.  ++|||++.++.+        .|++|..|.++|||+ +||++||+|++|||.++.++++.++...+...
T Consensus         7 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (107)
T 2h2b_A            7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKS   85 (107)
T ss_dssp             EEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             eeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCC
Confidence            5677888876  489999998643        489999999999999 99999999999999999999999988888888


Q ss_pred             CCeeEEEEEeCCc
Q psy9827         120 QDQIHLIVQNRRD  132 (627)
Q Consensus       120 g~~V~L~v~r~~~  132 (627)
                      ++.+.|+|.|++.
T Consensus        86 g~~v~l~v~R~~~   98 (107)
T 2h2b_A           86 GKNAKITIRRKKG   98 (107)
T ss_dssp             CSEEEEEEEEESC
T ss_pred             CCEEEEEEEECCC
Confidence            9999999998654

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.24  E-value=2.4e-11  Score=104.69  Aligned_cols=81  Identities=37%  Similarity=0.587  Sum_probs=72.2

Q ss_pred             CceEEEeccCCceeEEEEccC----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          50 DPRFITFQKEGSVGIRLTGGN----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        50 ~~r~v~l~k~g~lG~~i~g~~----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      ....+.+.+.++|||++.++.          ..|++|..|.++|||++ ||++||+|++|||.++.++++.++...++..
T Consensus        11 ~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~   89 (103)
T 1n7t_A           11 QEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF   89 (103)
T ss_dssp             CCEEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHHC
T ss_pred             EEEEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhcC
Confidence            445677888889999999853          45899999999999999 9999999999999999999999999988888


Q ss_pred             CCeeEEEEEeCC
Q psy9827         120 QDQIHLIVQNRR  131 (627)
Q Consensus       120 g~~V~L~v~r~~  131 (627)
                      ++.+.|+|.|+.
T Consensus        90 g~~v~l~v~R~~  101 (103)
T 1n7t_A           90 QNTVELIIVREV  101 (103)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEecC
Confidence            999999999754

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.23  E-value=3.3e-11  Score=103.91  Aligned_cols=82  Identities=34%  Similarity=0.559  Sum_probs=71.7

Q ss_pred             CceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhc-CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      ..+.+.+.+.  ++|||++.++.+  .+++|..|.++|||+++ ||++||+|++|||.++.++++.++...++..++.++
T Consensus         9 ~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~   88 (103)
T 2dc2_A            9 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   88 (103)
T ss_dssp             CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEE
T ss_pred             CcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            4567777664  489999998743  47999999999999995 999999999999999999999999999998888999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |++.+..
T Consensus        89 l~v~~~~   95 (103)
T 2dc2_A           89 FEVVYVA   95 (103)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9998744

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=2.2e-11  Score=105.94  Aligned_cols=85  Identities=33%  Similarity=0.545  Sum_probs=74.1

Q ss_pred             CCceEEEeccC-CceeEEEE-----ccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy9827          49 PDPRFITFQKE-GSVGIRLT-----GGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFL  116 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~-----g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l  116 (627)
                      .+.+.+.+.+. .+|||++.     ++.     ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...+
T Consensus         8 ~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   87 (108)
T 1q7x_A            8 GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL   87 (108)
T ss_dssp             SSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHH
T ss_pred             CcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35677788776 48999999     642     3689999999999999999 999999999999999999999999988


Q ss_pred             hcCCCeeEEEEEeCCcc
Q psy9827         117 LSLQDQIHLIVQNRRDE  133 (627)
Q Consensus       117 ~~~g~~V~L~v~r~~~~  133 (627)
                      +..++.+.|+|.|+...
T Consensus        88 ~~~g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           88 RNTGQVVHLLLEKGQSP  104 (108)
T ss_dssp             HHTTSEEEEEEECCCCS
T ss_pred             HcCCCeEEEEEEeCCcc
Confidence            88899999999986643

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=5.3e-11  Score=102.67  Aligned_cols=83  Identities=24%  Similarity=0.395  Sum_probs=72.8

Q ss_pred             CceEEEeccC-CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      ..+.+.+.+. .+|||++.++.    ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+..|
T Consensus        11 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   90 (104)
T 2djt_A           11 GHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQL   90 (104)
T ss_dssp             CCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEE
T ss_pred             ceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            5567777775 58999999853    4689999999999999999 9999999999999999999999888888788999


Q ss_pred             EEEEEeCCc
Q psy9827         124 HLIVQNRRD  132 (627)
Q Consensus       124 ~L~v~r~~~  132 (627)
                      .|+|.|+..
T Consensus        91 ~l~v~R~g~   99 (104)
T 2djt_A           91 HLVIRRPLS   99 (104)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEEECCC
Confidence            999987653

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.22  E-value=7.3e-11  Score=101.32  Aligned_cols=85  Identities=16%  Similarity=0.250  Sum_probs=72.2

Q ss_pred             CCCCceEEEeccC--CceeEEEEccCCC----CEEEEEeCCCChhhh-cCCCCCCEEEEECCEeCCCCCHHHHHHHHhc-
Q psy9827          47 VEPDPRFITFQKE--GSVGIRLTGGNKV----GIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGITREEAVLFLLS-  118 (627)
Q Consensus        47 ~~~~~r~v~l~k~--g~lG~~i~g~~~~----gi~V~~V~~gspA~~-aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~-  118 (627)
                      .....+.+.+.+.  ++|||++.+....    +++|..|.+||||++ +||++||+|++|||.++.+.++.++..+++. 
T Consensus         6 ~~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   85 (101)
T 2yt7_A            6 SGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRET   85 (101)
T ss_dssp             TTCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred             CCCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4457788888764  4899999864322    699999999999999 5599999999999999999999999998886 


Q ss_pred             -CCCeeEEEEEeCC
Q psy9827         119 -LQDQIHLIVQNRR  131 (627)
Q Consensus       119 -~g~~V~L~v~r~~  131 (627)
                       .++.|+|+|.|.+
T Consensus        86 ~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           86 KSQTSVTLSIVHCP   99 (101)
T ss_dssp             TTSSEEEEEECCCC
T ss_pred             CCCCeEEEEEEeCC
Confidence             7899999998755

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.22  E-value=5.1e-11  Score=103.31  Aligned_cols=81  Identities=28%  Similarity=0.568  Sum_probs=71.3

Q ss_pred             CCceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcC--CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC-
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG--LQPGDKILKVNDMDMKGITREEAVLFLLSLQD-  121 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG--L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~-  121 (627)
                      ...+.+.+.+.  ++|||++.++.+  .+++|..|.++|||+++|  |++||+|++|||.++.++++.++...++..++ 
T Consensus        16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~   95 (107)
T 3nfk_A           16 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   95 (107)
T ss_dssp             CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGS
T ss_pred             CCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhcccc
Confidence            45678888875  489999998643  479999999999999999  99999999999999999999999999987764 


Q ss_pred             ---eeEEEEEe
Q psy9827         122 ---QIHLIVQN  129 (627)
Q Consensus       122 ---~V~L~v~r  129 (627)
                         .|.|+|.|
T Consensus        96 ~~~~v~l~v~r  106 (107)
T 3nfk_A           96 HSGELMLLVRP  106 (107)
T ss_dssp             BTTBEEEEEEC
T ss_pred             CCcEEEEEEEc
Confidence               89999886

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=7.4e-11  Score=104.17  Aligned_cols=84  Identities=26%  Similarity=0.428  Sum_probs=74.7

Q ss_pred             CCceEEEeccC--CceeEEEEccCC---CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNK---VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..++.+.+.+.  .+|||++.++.+   .+++|..|.+||||+++| |++||+|++|||.++.+.++.++..+++..+..
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~   93 (117)
T 1v62_A           14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEK   93 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSE
T ss_pred             CCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            46788888885  489999998633   359999999999999999 999999999999999999999999999988999


Q ss_pred             eEEEEEeCCc
Q psy9827         123 IHLIVQNRRD  132 (627)
Q Consensus       123 V~L~v~r~~~  132 (627)
                      |.|+|.|...
T Consensus        94 v~l~v~r~~~  103 (117)
T 1v62_A           94 VRLEILPVPQ  103 (117)
T ss_dssp             EEEEECCBTT
T ss_pred             EEEEEEECCC
Confidence            9999998654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.22  E-value=2.2e-11  Score=107.50  Aligned_cols=83  Identities=29%  Similarity=0.448  Sum_probs=72.2

Q ss_pred             CceEEEeccC--CceeEEEEccC--------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN--------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~--------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      +.+.+.+.+.  ++|||++.++.        ..|++|..|.++|||+ +||++||+|++|||.++.++++.+++..++..
T Consensus        14 ~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~   92 (117)
T 2csj_A           14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   92 (117)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             eEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence            4566777775  48999999874        3579999999999997 89999999999999999999999999999888


Q ss_pred             CCeeEEEEEeCCcc
Q psy9827         120 QDQIHLIVQNRRDE  133 (627)
Q Consensus       120 g~~V~L~v~r~~~~  133 (627)
                      ++.|.|+|.|....
T Consensus        93 ~~~v~l~v~R~~~~  106 (117)
T 2csj_A           93 GKIAAIVVKRPRKV  106 (117)
T ss_dssp             CSEEEEEEEEEEEC
T ss_pred             CCeEEEEEEECCcc
Confidence            99999999986543

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=5.9e-11  Score=104.26  Aligned_cols=84  Identities=18%  Similarity=0.276  Sum_probs=73.4

Q ss_pred             CCceEEEeccC--CceeEEEEccCC---------CCEEEEEeCCCChhhh-cCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNK---------VGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGITREEAVLFL  116 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~---------~gi~V~~V~~gspA~~-aGL~~GD~Il~VnG~~v~~~~~~~~~~~l  116 (627)
                      +.++.|.+.+.  ++|||+|.++.+         .+++|..|.++|||++ +||++||+|++|||.++.++++.++..++
T Consensus         9 ~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l   88 (114)
T 1uew_A            9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             ccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            57788888774  489999988631         1579999999999999 99999999999999999999999999988


Q ss_pred             hcCCCeeEEEEEeCCc
Q psy9827         117 LSLQDQIHLIVQNRRD  132 (627)
Q Consensus       117 ~~~g~~V~L~v~r~~~  132 (627)
                      +..+..|.|+|.|...
T Consensus        89 ~~~g~~v~l~v~r~~~  104 (114)
T 1uew_A           89 KDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HHTTTEEEEEECCCSC
T ss_pred             HcCCCeEEEEEEeCCc
Confidence            8889999999998654

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=4.3e-11  Score=103.19  Aligned_cols=83  Identities=25%  Similarity=0.424  Sum_probs=71.9

Q ss_pred             CCceEEEeccC-CceeEEEEccCCC---CEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc-----
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNKV---GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS-----  118 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~~---gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~-----  118 (627)
                      +..+.|.+.+. .+|||+|.++.+.   .++|..|.+++||+++| |++||+|++|||.++.++++.+++.+++.     
T Consensus         5 ~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~   84 (103)
T 1ufx_A            5 SSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTK   84 (103)
T ss_dssp             SSSEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCS
T ss_pred             CceEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccC
Confidence            45678888775 4899999987543   35999999999999999 99999999999999999999999998885     


Q ss_pred             CCCeeEEEEEeCC
Q psy9827         119 LQDQIHLIVQNRR  131 (627)
Q Consensus       119 ~g~~V~L~v~r~~  131 (627)
                      .++.+.|+|.|..
T Consensus        85 ~~~~i~l~v~r~~   97 (103)
T 1ufx_A           85 DRDYIDFLVTEFN   97 (103)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             CCCeEEEEEEEcc
Confidence            5788999988754

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.21  E-value=5.1e-11  Score=103.13  Aligned_cols=81  Identities=23%  Similarity=0.391  Sum_probs=71.8

Q ss_pred             ceEEEeccC--CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          51 PRFITFQKE--GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        51 ~r~v~l~k~--g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      +|.+.+.+.  +++||.+.... ..|++|..|.+||||+++||++||+|++|||.++.++++.++...++..++.|.|+|
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v   81 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV   81 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence            678888775  37999888764 358999999999999999999999999999999999999999888888899999999


Q ss_pred             EeCC
Q psy9827         128 QNRR  131 (627)
Q Consensus       128 ~r~~  131 (627)
                      .|..
T Consensus        82 ~r~~   85 (106)
T 3ngh_A           82 LDGD   85 (106)
T ss_dssp             ECHH
T ss_pred             EECC
Confidence            9754

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.21  E-value=4.3e-11  Score=102.29  Aligned_cols=79  Identities=28%  Similarity=0.377  Sum_probs=67.6

Q ss_pred             EEeccC-CceeEEEEccCC---------CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          54 ITFQKE-GSVGIRLTGGNK---------VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        54 v~l~k~-g~lG~~i~g~~~---------~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      +.+.+. ++|||++.+...         .|++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+
T Consensus         6 v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   85 (99)
T 3khf_A            6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKI   85 (99)
T ss_dssp             EEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred             EEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEE
Confidence            445554 589999986521         2678999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCc
Q psy9827         124 HLIVQNRRD  132 (627)
Q Consensus       124 ~L~v~r~~~  132 (627)
                      .|++.|...
T Consensus        86 ~l~v~r~~~   94 (99)
T 3khf_A           86 SLRTTALEN   94 (99)
T ss_dssp             EEEEECSCS
T ss_pred             EEEEEECCC
Confidence            999998553

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.21  E-value=7.4e-11  Score=105.39  Aligned_cols=82  Identities=27%  Similarity=0.507  Sum_probs=72.7

Q ss_pred             CceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .++.+.+.+.  ++|||++.++.+  .+++|..|.+||||+++| |++||+|++|||.++.++++.++...++..++.|+
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~   98 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT   98 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4577777774  589999998753  579999999999999999 99999999999999999999999999998888899


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|.+
T Consensus        99 l~v~r~~  105 (125)
T 3hpk_A           99 IHYNKLQ  105 (125)
T ss_dssp             EEEEEEC
T ss_pred             EEEEECC
Confidence            9998743

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.20  E-value=9.8e-11  Score=102.85  Aligned_cols=88  Identities=26%  Similarity=0.507  Sum_probs=72.6

Q ss_pred             cccccCCCCceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy9827          42 FSIFFVEPDPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFL  116 (627)
Q Consensus        42 ~~~~~~~~~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l  116 (627)
                      ...+|....++.+.+.+.  ++|||++.++.+  .+++|..|.+||||+++| |++||+|++|||.++.+.+..++...+
T Consensus        16 ~~~~~q~~~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l   95 (114)
T 2gzv_A           16 ENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI   95 (114)
T ss_dssp             ------CCCCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             cceeeccCCCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            455677778999999875  469999998754  379999999999999999 999999999999999888999988888


Q ss_pred             hcCCCeeEEEEEe
Q psy9827         117 LSLQDQIHLIVQN  129 (627)
Q Consensus       117 ~~~g~~V~L~v~r  129 (627)
                      +..++.+.|+|.+
T Consensus        96 ~~~~~~v~l~v~~  108 (114)
T 2gzv_A           96 QEVKGEVTIHYNK  108 (114)
T ss_dssp             HHCCSEEEEEEEC
T ss_pred             HcCCCeEEEEEEe
Confidence            8777788888874

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.20  E-value=4.4e-11  Score=103.66  Aligned_cols=79  Identities=19%  Similarity=0.342  Sum_probs=69.1

Q ss_pred             eEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          52 RFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        52 r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      ..+.|.+.  .+|||++.+ ...|++|..|.+||||+++| |++||+|++|||.++.+.++.++...++..++.|.|+|.
T Consensus         4 ~~v~L~k~~~~glG~~i~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~   82 (106)
T 2la8_A            4 FNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVT   82 (106)
T ss_dssp             EEEEECCBSSSTTCCEEEE-CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEE
T ss_pred             EEEEEEeCCCCccCEEEEe-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE
Confidence            34566543  489999887 45789999999999999999 999999999999999999999999999988889999999


Q ss_pred             eCC
Q psy9827         129 NRR  131 (627)
Q Consensus       129 r~~  131 (627)
                      |..
T Consensus        83 R~~   85 (106)
T 2la8_A           83 RPK   85 (106)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            854

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=6e-11  Score=99.81  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=71.1

Q ss_pred             CCCceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          48 EPDPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        48 ~~~~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .+..|.|.+.|.  ++|||++.+. ..+++|..|.++|||+++| |++||+|++|||.++ +.++.++...++..++.+.
T Consensus         4 ~~~~r~v~l~k~~~~~lG~~i~~~-~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~   81 (91)
T 2e7k_A            4 GSSGRMVGIRKTAGEHLGVTFRVE-GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVI   81 (91)
T ss_dssp             CCCSCBCCBCCCTTCCCCEEEEES-SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBC
T ss_pred             CCCcEEEEEEECCCCcEeEEEEec-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEE
Confidence            456788888764  4899999984 5689999999999999987 999999999999999 8899999999988888999


Q ss_pred             EEEEeC
Q psy9827         125 LIVQNR  130 (627)
Q Consensus       125 L~v~r~  130 (627)
                      |+|.+.
T Consensus        82 l~v~~~   87 (91)
T 2e7k_A           82 LKILSG   87 (91)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            999864

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.20  E-value=6.9e-11  Score=107.63  Aligned_cols=87  Identities=32%  Similarity=0.492  Sum_probs=71.8

Q ss_pred             CCCceEEEeccCC-----ceeEEEEccC--------------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCC
Q psy9827          48 EPDPRFITFQKEG-----SVGIRLTGGN--------------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT  108 (627)
Q Consensus        48 ~~~~r~v~l~k~g-----~lG~~i~g~~--------------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~  108 (627)
                      .+..+.+.+.+.+     +|||++.++.              ..|++|..|.+||||+++||++||+|++|||.++.+++
T Consensus        21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~  100 (139)
T 2vz5_A           21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVT  100 (139)
T ss_dssp             -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred             CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCC
Confidence            3456777776642     7999998753              36899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-CCCeeEEEEEeCCccc
Q psy9827         109 REEAVLFLLS-LQDQIHLIVQNRRDEY  134 (627)
Q Consensus       109 ~~~~~~~l~~-~g~~V~L~v~r~~~~~  134 (627)
                      +.++...++. .++.|.|+|.|++...
T Consensus       101 ~~~~~~~l~~~~g~~v~l~v~R~g~~~  127 (139)
T 2vz5_A          101 HDQARKRLTKRSEEVVRLLVTRQSLQK  127 (139)
T ss_dssp             HHHHHHHHCCTTCSEEEEEEEECC---
T ss_pred             HHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence            9999888885 6789999999876543

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=1.9e-11  Score=107.07  Aligned_cols=87  Identities=36%  Similarity=0.659  Sum_probs=77.1

Q ss_pred             CCCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .+.++.|.+.+. .+|||++.++. ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+..+.
T Consensus        13 ~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~   92 (113)
T 1um7_A           13 AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVT   92 (113)
T ss_dssp             CCSEEEEEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEE
T ss_pred             CCceEEEEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            457888999886 48999998875 3689999999999999999 99999999999999999999999888888899999


Q ss_pred             EEEEeCCccc
Q psy9827         125 LIVQNRRDEY  134 (627)
Q Consensus       125 L~v~r~~~~~  134 (627)
                      |+|.|++..+
T Consensus        93 l~v~r~~~~~  102 (113)
T 1um7_A           93 IVAQYRPEEY  102 (113)
T ss_dssp             EEEECCHHHH
T ss_pred             EEEEECcchh
Confidence            9999876544

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=9.3e-11  Score=100.42  Aligned_cols=83  Identities=34%  Similarity=0.540  Sum_probs=71.0

Q ss_pred             CCceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      +..+.+.+.+.  ++|||++.+..  ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++. +..+.
T Consensus         9 ~~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~   87 (100)
T 2eeh_A            9 DIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLH   87 (100)
T ss_dssp             CEECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEE
T ss_pred             CeEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEE
Confidence            34566778775  46999999874  368999999999999999999999999999999999997777777766 78999


Q ss_pred             EEEEeCCc
Q psy9827         125 LIVQNRRD  132 (627)
Q Consensus       125 L~v~r~~~  132 (627)
                      |+|.|++.
T Consensus        88 l~v~R~g~   95 (100)
T 2eeh_A           88 MMVRRMGS   95 (100)
T ss_dssp             EEEEECSC
T ss_pred             EEEEECCc
Confidence            99998654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.20  E-value=6.2e-11  Score=111.57  Aligned_cols=78  Identities=27%  Similarity=0.541  Sum_probs=69.2

Q ss_pred             EEEeccC-CceeEEEEc---c-----CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          53 FITFQKE-GSVGIRLTG---G-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        53 ~v~l~k~-g~lG~~i~g---~-----~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      .+.+.+. ++|||+|.+   +     ...|++|..|.+||||+++| |++||+|++|||.++.++++.+++.+++.++..
T Consensus        83 ~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~  162 (170)
T 3egg_C           83 PVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGR  162 (170)
T ss_dssp             EEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSE
T ss_pred             EEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            4556665 589999998   2     23579999999999999999 999999999999999999999999999999999


Q ss_pred             eEEEEEeC
Q psy9827         123 IHLIVQNR  130 (627)
Q Consensus       123 V~L~v~r~  130 (627)
                      |.|+|.|.
T Consensus       163 v~L~V~R~  170 (170)
T 3egg_C          163 VRFMIGRE  170 (170)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            99999873

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.19  E-value=1.2e-10  Score=102.02  Aligned_cols=82  Identities=16%  Similarity=0.410  Sum_probs=72.6

Q ss_pred             CceEEEeccC-C-ceeEEEEccCCCCEEEEEeCCCChhhhcCC-CCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          50 DPRFITFQKE-G-SVGIRLTGGNKVGIFVTAVQPGSPASLQGL-QPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        50 ~~r~v~l~k~-g-~lG~~i~g~~~~gi~V~~V~~gspA~~aGL-~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      ..+.+.+.+. + +|||++.+. ..+++|..|.++|||+++|| ++||+|++|||.++.++++.++..+++..+..+.|+
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~~~-~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~  103 (113)
T 1va8_A           25 TVKIVRIEKARDIPLGATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV  103 (113)
T ss_dssp             ECEEEEEEECTTCCCCEEEEEC-SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEE
T ss_pred             ceEEEEEEeCCCCceeEEEEeC-CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5677888775 3 799999877 56899999999999999998 999999999999999999999999998777899999


Q ss_pred             EEeCCc
Q psy9827         127 VQNRRD  132 (627)
Q Consensus       127 v~r~~~  132 (627)
                      |.|...
T Consensus       104 v~r~~~  109 (113)
T 1va8_A          104 LIPSSG  109 (113)
T ss_dssp             EECCCC
T ss_pred             EEECCc
Confidence            997654

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.19  E-value=9.8e-11  Score=103.65  Aligned_cols=85  Identities=28%  Similarity=0.454  Sum_probs=70.2

Q ss_pred             CCceEEEeccC--CceeEEEEccCC---CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC-
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNK---VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQD-  121 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~-  121 (627)
                      +..+.+.+.+.  ++|||++.++.+   .|++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+. 
T Consensus        14 ~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~   93 (119)
T 1x6d_A           14 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP   93 (119)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred             CCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            44566667664  489999998753   589999999999999999 99999999999999999999999988876554 


Q ss_pred             eeEEEEEeCCcc
Q psy9827         122 QIHLIVQNRRDE  133 (627)
Q Consensus       122 ~V~L~v~r~~~~  133 (627)
                      .+.+++.|+...
T Consensus        94 ~~~l~v~R~~~~  105 (119)
T 1x6d_A           94 RQAVIVTRKLTP  105 (119)
T ss_dssp             SEEEEEEECCCS
T ss_pred             eEEEEEEcCCCc
Confidence            455777776544

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=1.7e-11  Score=107.10  Aligned_cols=83  Identities=35%  Similarity=0.578  Sum_probs=74.2

Q ss_pred             CCceEEEeccC--CceeEEEEccC-----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHH
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN-----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVL  114 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~-----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~  114 (627)
                      |..+.|.+.+.  ++|||++.++.           ..|++|..|.++|||+++| |++||+|++|||.++.++++.++..
T Consensus         8 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   87 (111)
T 1uju_A            8 PGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQ   87 (111)
T ss_dssp             CSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHH
T ss_pred             CccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            56778888775  58999999875           2479999999999999999 9999999999999999999999999


Q ss_pred             HHhcCCCeeEEEEEeCC
Q psy9827         115 FLLSLQDQIHLIVQNRR  131 (627)
Q Consensus       115 ~l~~~g~~V~L~v~r~~  131 (627)
                      .++..+..+.|+|.|+.
T Consensus        88 ~l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           88 LLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HHSSCSSEEEECCCCCC
T ss_pred             HHHcCCCeEEEEEEECC
Confidence            99988999999998754

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.19  E-value=1.2e-10  Score=101.35  Aligned_cols=81  Identities=31%  Similarity=0.446  Sum_probs=70.2

Q ss_pred             CCceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC-eeEEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQD-QIHLI  126 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~-~V~L~  126 (627)
                      ..+|.|.+.+. ++|||++.+.  .+++|..|.++|||+++||++||+|++|||.++.++++.++...++..++ .|.|+
T Consensus        22 ~~~r~v~l~k~~~~~G~~l~~~--~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~   99 (109)
T 2vsv_A           22 SMPRSIRFTAEEGDLGFTLRGN--APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK   99 (109)
T ss_dssp             HSCEEEEECCGGGCCCEEEESS--SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred             CCCEEEEEEeCCCceeEEEeCC--CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence            36788999886 5899999754  57899999999999999999999999999999999998888888886665 49999


Q ss_pred             EEeCC
Q psy9827         127 VQNRR  131 (627)
Q Consensus       127 v~r~~  131 (627)
                      |.|..
T Consensus       100 V~~~~  104 (109)
T 2vsv_A          100 VVSLL  104 (109)
T ss_dssp             EESCC
T ss_pred             EEECC
Confidence            98644

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.19  E-value=7.4e-11  Score=98.48  Aligned_cols=81  Identities=25%  Similarity=0.380  Sum_probs=67.3

Q ss_pred             CCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeeE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQIH  124 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~V~  124 (627)
                      ++.+.+.+.+. ++|||++.+.. ..+++|..| ++|||+ +||++||+|++|||.++.++++.++...++.  .++.+.
T Consensus         2 ~~~~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~   79 (88)
T 3bpu_A            2 MELITVHIVKGPMGFGFTIADSPGGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT   79 (88)
T ss_dssp             EEEEEEEEECBTTBSSCEEEECTTSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEE
T ss_pred             CcEEEEEEEcCCCceeEEEEecCCCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEE
Confidence            35677888886 58999998763 468999887 999999 9999999999999999999998888888874  688999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|++
T Consensus        80 l~v~R~g   86 (88)
T 3bpu_A           80 LLVQRQT   86 (88)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCC
Confidence            9998754

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.18  E-value=3.8e-11  Score=103.44  Aligned_cols=81  Identities=23%  Similarity=0.425  Sum_probs=70.3

Q ss_pred             ceEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeE
Q psy9827          51 PRFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIH  124 (627)
Q Consensus        51 ~r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~  124 (627)
                      .+.+.+.+. .+|||++.++.  ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..  +..|.
T Consensus        10 ~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~   89 (103)
T 1uep_A           10 ELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVN   89 (103)
T ss_dssp             EECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEE
T ss_pred             EEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEE
Confidence            345566665 48999999864  4689999999999999999 999999999999999999999999888865  79999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|+.
T Consensus        90 l~v~R~~   96 (103)
T 1uep_A           90 LTVRRKV   96 (103)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCC
Confidence            9999865

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.18  E-value=1.4e-10  Score=98.89  Aligned_cols=84  Identities=30%  Similarity=0.483  Sum_probs=70.5

Q ss_pred             CCCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeeE
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL-QDQIH  124 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-g~~V~  124 (627)
                      ...++.+.+.+. .+|||++.++. ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++.. +..+.
T Consensus         7 ~~~~~~~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   86 (98)
T 2jxo_A            7 MLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL   86 (98)
T ss_dssp             SSCCEEEEEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred             cCCcEEEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence            346788888886 48999998864 3589999999999999999999999999999999999899988888755 44566


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |++.|++
T Consensus        87 l~v~R~g   93 (98)
T 2jxo_A           87 LVVDRET   93 (98)
T ss_dssp             EECCHHH
T ss_pred             EEEECCc
Confidence            7777643

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=5e-11  Score=105.57  Aligned_cols=82  Identities=28%  Similarity=0.561  Sum_probs=71.2

Q ss_pred             CceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhc--CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC---
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQ--GLQPGDKILKVNDMDMKGITREEAVLFLLSLQ---  120 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~a--GL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g---  120 (627)
                      ..+.+.+.+.  ++|||++.++.+  .+++|..|.++|||+++  ||++||+|++|||.++.++++.++...++..+   
T Consensus        15 ~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~   94 (119)
T 2cs5_A           15 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH   94 (119)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCC
T ss_pred             CeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccC
Confidence            5678888885  469999998743  47999999999999999  89999999999999999999999998888663   


Q ss_pred             -CeeEEEEEeCC
Q psy9827         121 -DQIHLIVQNRR  131 (627)
Q Consensus       121 -~~V~L~v~r~~  131 (627)
                       ..|.|+|.|+.
T Consensus        95 ~~~v~l~v~R~~  106 (119)
T 2cs5_A           95 SGELMLLVRPNA  106 (119)
T ss_dssp             SSCEEEEEECCC
T ss_pred             CCEEEEEEEccc
Confidence             58999998754

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.17  E-value=8.4e-11  Score=101.45  Aligned_cols=81  Identities=21%  Similarity=0.367  Sum_probs=69.6

Q ss_pred             CCCCceEEEeccC--CceeEEEEcc---------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy9827          47 VEPDPRFITFQKE--GSVGIRLTGG---------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLF  115 (627)
Q Consensus        47 ~~~~~r~v~l~k~--g~lG~~i~g~---------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~  115 (627)
                      ..+.++.+.+.+.  ++|||++.+.         ...+++|..|.++|||+++||++||+|++|||.++.++++.++...
T Consensus        12 s~~~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~   91 (104)
T 2z17_A           12 SWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDL   91 (104)
T ss_dssp             CCSCCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHH
T ss_pred             CCCcceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Confidence            4557788888775  5899999983         2358999999999999999999999999999999999999999998


Q ss_pred             HhcCCCeeEEEE
Q psy9827         116 LLSLQDQIHLIV  127 (627)
Q Consensus       116 l~~~g~~V~L~v  127 (627)
                      ++..+..|.|+|
T Consensus        92 l~~~~~~v~l~v  103 (104)
T 2z17_A           92 IRSSGNLLTIET  103 (104)
T ss_dssp             HHHTTTEEEEEC
T ss_pred             HHhCCCcEEEEE
Confidence            887777887765

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.17  E-value=1.5e-10  Score=98.22  Aligned_cols=79  Identities=28%  Similarity=0.487  Sum_probs=68.5

Q ss_pred             EEEeccC-CceeEEEEcc------CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          53 FITFQKE-GSVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        53 ~v~l~k~-g~lG~~i~g~------~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .+.+.+. .+|||++.+.      ...+++|..|.++|||+++| |++||+|++|||.++.++++.++...++..+..+.
T Consensus         7 ~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   86 (97)
T 2iwn_A            7 DVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL   86 (97)
T ss_dssp             EEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEE
T ss_pred             EEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            3455554 5899999987      24689999999999999999 99999999999999999999998888888899999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|++
T Consensus        87 l~v~r~g   93 (97)
T 2iwn_A           87 LTLMRRG   93 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            9998754

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.16  E-value=7.2e-11  Score=99.91  Aligned_cols=81  Identities=22%  Similarity=0.334  Sum_probs=69.3

Q ss_pred             eEEEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          52 RFITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        52 r~v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      ..+.+...++|||++.++.+  .|++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..+.|+|.|
T Consensus         8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R   87 (94)
T 1vb7_A            8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDR   87 (94)
T ss_dssp             EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEEC
T ss_pred             EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEE
Confidence            33444445689999988643  4799999999999999999999999999999999999999988888777899999998


Q ss_pred             CCc
Q psy9827         130 RRD  132 (627)
Q Consensus       130 ~~~  132 (627)
                      ++.
T Consensus        88 ~g~   90 (94)
T 1vb7_A           88 SSG   90 (94)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            654

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=3.4e-11  Score=103.64  Aligned_cols=88  Identities=19%  Similarity=0.383  Sum_probs=72.4

Q ss_pred             ccCCCCce--EEEeccC-CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy9827          45 FFVEPDPR--FITFQKE-GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS  118 (627)
Q Consensus        45 ~~~~~~~r--~v~l~k~-g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~  118 (627)
                      |+...+.+  .+.+.+. .+|||++.++.+  .+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.
T Consensus         4 ~~~~~~~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   83 (103)
T 1wfv_A            4 GSSGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS   83 (103)
T ss_dssp             CCSCCCSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCccCceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            33444443  4445554 489999998643  489999999999999999 99999999999999999999998888887


Q ss_pred             CCCeeEEEEEeCCc
Q psy9827         119 LQDQIHLIVQNRRD  132 (627)
Q Consensus       119 ~g~~V~L~v~r~~~  132 (627)
                      .+..|.|+|.|+..
T Consensus        84 ~g~~v~l~v~R~~~   97 (103)
T 1wfv_A           84 GGRRVRLLLKRGTG   97 (103)
T ss_dssp             HCSEECEEEECTTC
T ss_pred             CCCeEEEEEEECCC
Confidence            88999999998654

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.16  E-value=1.4e-10  Score=104.25  Aligned_cols=84  Identities=30%  Similarity=0.544  Sum_probs=72.4

Q ss_pred             CceEEEeccC--CceeEEEEcc-------CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          50 DPRFITFQKE--GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~-------~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      ....+.+.+.  ++|||++.++       ...|++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..
T Consensus        15 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   94 (129)
T 2dmz_A           15 ETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA   94 (129)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHC
T ss_pred             cEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3455667553  5899999985       24689999999999999999 999999999999999999999999988888


Q ss_pred             CCeeEEEEEeCCcc
Q psy9827         120 QDQIHLIVQNRRDE  133 (627)
Q Consensus       120 g~~V~L~v~r~~~~  133 (627)
                      +..|.|+|.|++..
T Consensus        95 ~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           95 GQVVHLTLVRRKTS  108 (129)
T ss_dssp             CSSEEEEEEEESSS
T ss_pred             CCeEEEEEEeCCcc
Confidence            99999999987643

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.15  E-value=2e-10  Score=102.15  Aligned_cols=85  Identities=22%  Similarity=0.350  Sum_probs=73.1

Q ss_pred             CCCceEEEeccC--CceeEEEEcc------CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy9827          48 EPDPRFITFQKE--GSVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS  118 (627)
Q Consensus        48 ~~~~r~v~l~k~--g~lG~~i~g~------~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~  118 (627)
                      .++.+.+.+.+.  .+|||++.++      ...+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.
T Consensus        13 ~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   92 (122)
T 1v5q_A           13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             CEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             cceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            356777888876  5899999976      23578999999999999999 99999999999999999889898888874


Q ss_pred             C--CCeeEEEEEeCCc
Q psy9827         119 L--QDQIHLIVQNRRD  132 (627)
Q Consensus       119 ~--g~~V~L~v~r~~~  132 (627)
                      .  ++.|.|+|.|+..
T Consensus        93 ~~~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           93 SSITSKVTLEIEFDVA  108 (122)
T ss_dssp             HTTTTCEEEEEEEECC
T ss_pred             CCCCCeEEEEEEECCc
Confidence            3  7899999998654

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=7.8e-11  Score=100.95  Aligned_cols=84  Identities=24%  Similarity=0.458  Sum_probs=70.1

Q ss_pred             CCCceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhc-CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          48 EPDPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        48 ~~~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..+.+.+.+...  .+|||++.++.+  .+++|..|.++|||+++ ||++||+|++|||.++.++ +.++...++..+..
T Consensus         7 ~~~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~   85 (100)
T 2edp_A            7 GGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRI   85 (100)
T ss_dssp             CCCCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSS
T ss_pred             CCCcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCe
Confidence            446666665543  489999998643  46899999999999999 8999999999999999997 77788888877899


Q ss_pred             eEEEEEeCCc
Q psy9827         123 IHLIVQNRRD  132 (627)
Q Consensus       123 V~L~v~r~~~  132 (627)
                      +.|+|.|+..
T Consensus        86 v~l~v~R~~~   95 (100)
T 2edp_A           86 LKLIVRRRNS   95 (100)
T ss_dssp             CEEEEEECCC
T ss_pred             EEEEEEeCCC
Confidence            9999998653

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.15  E-value=5.7e-11  Score=107.08  Aligned_cols=73  Identities=33%  Similarity=0.550  Sum_probs=64.7

Q ss_pred             CceeEEEEccCC-----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEEEEEeCC
Q psy9827          60 GSVGIRLTGGNK-----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHLIVQNRR  131 (627)
Q Consensus        60 g~lG~~i~g~~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L~v~r~~  131 (627)
                      ++|||++.++..     .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..  +..|.|+|.|+.
T Consensus        48 ~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A           48 AMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG  127 (131)
T ss_dssp             TTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred             CCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence            379999998632     389999999999999999 999999999999999999999999988864  589999999865


Q ss_pred             c
Q psy9827         132 D  132 (627)
Q Consensus       132 ~  132 (627)
                      .
T Consensus       128 ~  128 (131)
T 1wfg_A          128 P  128 (131)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.15  E-value=1.2e-10  Score=104.66  Aligned_cols=80  Identities=24%  Similarity=0.386  Sum_probs=69.6

Q ss_pred             eEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEE
Q psy9827          52 RFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHL  125 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L  125 (627)
                      ..+.+.+. ++|||++.++.  ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..  ++.|.|
T Consensus        20 ~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   99 (129)
T 2kpk_A           20 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL   99 (129)
T ss_dssp             EEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEE
T ss_pred             EEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence            45567775 48999999864  3469999999999999999 999999999999999999999999888865  789999


Q ss_pred             EEEeCC
Q psy9827         126 IVQNRR  131 (627)
Q Consensus       126 ~v~r~~  131 (627)
                      +|.|+.
T Consensus       100 ~v~R~~  105 (129)
T 2kpk_A          100 ELCRGY  105 (129)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            999865

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=1.5e-10  Score=99.31  Aligned_cols=83  Identities=35%  Similarity=0.590  Sum_probs=69.6

Q ss_pred             CCCceEEEeccC---CceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          48 EPDPRFITFQKE---GSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        48 ~~~~r~v~l~k~---g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..+++.+.+.+.   .+|||++.++.  ..|++|..|.++|||+++||++||+|++|||.++.++++.+++..++ .+..
T Consensus         6 ~~~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~~~~   84 (101)
T 1uez_A            6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK-GSKK   84 (101)
T ss_dssp             SCCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS-SSSS
T ss_pred             CCccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc-CCCe
Confidence            357888888774   38999999874  46899999999999999999999999999999999999976555544 4568


Q ss_pred             eEEEEEeCC
Q psy9827         123 IHLIVQNRR  131 (627)
Q Consensus       123 V~L~v~r~~  131 (627)
                      +.|+|.|+.
T Consensus        85 v~l~v~R~g   93 (101)
T 1uez_A           85 LVLSVYSAG   93 (101)
T ss_dssp             CCEEECCCC
T ss_pred             EEEEEEECC
Confidence            999998754

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.14  E-value=2.5e-10  Score=99.39  Aligned_cols=83  Identities=19%  Similarity=0.226  Sum_probs=71.2

Q ss_pred             CCCceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeE
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIH  124 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~  124 (627)
                      .++.+.|.|.|. .+|||+|.++ ..|.+|..|.+  +|+.+||++||+|++|||.++.+++|.+++.+++.+  +..|+
T Consensus        10 ~~~~~~V~L~Kg~~G~GFsI~~~-~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~   86 (113)
T 3soe_A           10 AGLLVTIPLIKGPKGFGFAIADS-PTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVP   86 (113)
T ss_dssp             HCEEEEEEEECBTTBSSEEEEEE-TTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEE
T ss_pred             CCCEEEEEEEECCCcccEEEeCC-CCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEE
Confidence            356788888886 4999999765 45788999988  588899999999999999999999999999999864  78999


Q ss_pred             EEEEeCCcc
Q psy9827         125 LIVQNRRDE  133 (627)
Q Consensus       125 L~v~r~~~~  133 (627)
                      |+|.|....
T Consensus        87 L~V~R~g~~   95 (113)
T 3soe_A           87 LLILRGGPP   95 (113)
T ss_dssp             EEEEESSCC
T ss_pred             EEEEECCcc
Confidence            999997643

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.14  E-value=2.6e-10  Score=96.00  Aligned_cols=79  Identities=24%  Similarity=0.363  Sum_probs=65.7

Q ss_pred             CceEEEeccCC----ceeEEEEccC---CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          50 DPRFITFQKEG----SVGIRLTGGN---KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        50 ~~r~v~l~k~g----~lG~~i~g~~---~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..+.+.+.|..    +|||++....   ..|++|..|.++|||+++||++||+|++|||.++.++++.++...+.+  ..
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~--~~   83 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PS   83 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS--SE
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--Ce
Confidence            45778888763    7999998843   247999999999999999999999999999999999999888887774  57


Q ss_pred             eEEEEEeC
Q psy9827         123 IHLIVQNR  130 (627)
Q Consensus       123 V~L~v~r~  130 (627)
                      ++|+|..-
T Consensus        84 l~ltV~~~   91 (94)
T 3kzd_A           84 LGLLVRTY   91 (94)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            88887753

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.13  E-value=2.2e-10  Score=100.52  Aligned_cols=83  Identities=23%  Similarity=0.400  Sum_probs=72.0

Q ss_pred             CceEEEeccC--CceeEEEEcc-CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~-~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      +++.+.+.+.  ..|||++... ...|++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.|.|+
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   92 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL   92 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEE
T ss_pred             CCEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            6677777664  4789888865 346899999999999999999999999999999999999999988888779999999


Q ss_pred             EEeCCc
Q psy9827         127 VQNRRD  132 (627)
Q Consensus       127 v~r~~~  132 (627)
                      |.|+..
T Consensus        93 v~R~~~   98 (114)
T 2edz_A           93 VLDGDS   98 (114)
T ss_dssp             EECHHH
T ss_pred             EEECCc
Confidence            998654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.13  E-value=3.3e-10  Score=130.44  Aligned_cols=137  Identities=23%  Similarity=0.331  Sum_probs=109.4

Q ss_pred             cCCCCccc-cccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeC
Q psy9827         140 SQRGDSFH-IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILG  218 (627)
Q Consensus       140 ~~~~~~~~-l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~  218 (627)
                      ++++...+ |+.||.|++|||..+.++++.+++.+++.++..+.|.+.|....    ....+.|+|.+...+.||.+..+
T Consensus        99 gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~----~~~~~~v~l~k~~~~lG~~i~~~  174 (721)
T 2xkx_A           99 GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP----AEKVMEIKLIKGPKGLGFSIAGG  174 (721)
T ss_pred             CCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEecccc----cccceeeeeeeecCCCceeeccC
Confidence            34444445 99999999999999999999999999999999999999776311    11346788887654444444432


Q ss_pred             ---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         219 ---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       219 ---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                               .|++|..|.+|+    +|..+| |++||+|++|||+++.++++.+++.+++..++.+.|.|.|++..
T Consensus       175 ~~~~~~~~~~gv~V~~V~~gs----~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~V~R~g~~  246 (721)
T 2xkx_A          175 VGNQHIPGDNSIYVTKIIEGG----AAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNA  246 (721)
T ss_pred             CCccccCCCCceEEEEeCCCC----chhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence                     489999998873    444556 99999999999999999999999999998888999999998754

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.3e-11  Score=107.88  Aligned_cols=84  Identities=27%  Similarity=0.418  Sum_probs=73.9

Q ss_pred             CCCceEEEeccC-CceeEEEEcc------------------------------CCCCEEEEEeCCCChhhhcCCCCCCEE
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGG------------------------------NKVGIFVTAVQPGSPASLQGLQPGDKI   96 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~------------------------------~~~gi~V~~V~~gspA~~aGL~~GD~I   96 (627)
                      .+.+|.|.|.|. .+|||++.+.                              ...+++|..|.++|||+++||++||+|
T Consensus         6 ~~~~r~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I   85 (126)
T 2yuy_A            6 SGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRI   85 (126)
T ss_dssp             SSSCCCEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHTCCSSCCC
T ss_pred             CCCCEEEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcCCCCCCEE
Confidence            568889999886 4899999751                              125699999999999999999999999


Q ss_pred             EEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827          97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus        97 l~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      ++|||.++.++++.++..+++..+..|.|+|.|..
T Consensus        86 ~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~  120 (126)
T 2yuy_A           86 IKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKD  120 (126)
T ss_dssp             CEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCC
T ss_pred             EEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            99999999999999999999988999999998755

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.11  E-value=1.1e-10  Score=117.24  Aligned_cols=84  Identities=32%  Similarity=0.482  Sum_probs=75.9

Q ss_pred             CceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhh-cCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~-aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      ..+.|.+.|.  ++|||+|.++.  ..|++|..|.+||||++ +||++||+|++|||.++.++++.+++.+++..++.|+
T Consensus        77 ~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~  156 (263)
T 1z87_A           77 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV  156 (263)
T ss_dssp             SSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCC
T ss_pred             ccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEE
Confidence            5688999886  48999999974  36899999999999999 6999999999999999999999999999998899999


Q ss_pred             EEEEeCCcc
Q psy9827         125 LIVQNRRDE  133 (627)
Q Consensus       125 L~v~r~~~~  133 (627)
                      |+|.|.+..
T Consensus       157 L~V~R~~~~  165 (263)
T 1z87_A          157 LEVKYMKEV  165 (263)
T ss_dssp             EEEECCSSS
T ss_pred             EEEEeCccc
Confidence            999987654

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.10  E-value=4.5e-10  Score=96.76  Aligned_cols=70  Identities=39%  Similarity=0.630  Sum_probs=62.0

Q ss_pred             ceeEEEEccC--------------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEE
Q psy9827          61 SVGIRLTGGN--------------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHL  125 (627)
Q Consensus        61 ~lG~~i~g~~--------------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L  125 (627)
                      +|||++.++.              ..|++|..|.++|||+++||++||+|++|||.++.+.++.++...++ ..+..+.|
T Consensus        20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l   99 (104)
T 3sfj_A           20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL   99 (104)
T ss_dssp             ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEE
T ss_pred             cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEE
Confidence            6999999542              35799999999999999999999999999999999999989888887 45789999


Q ss_pred             EEEeC
Q psy9827         126 IVQNR  130 (627)
Q Consensus       126 ~v~r~  130 (627)
                      +|.|+
T Consensus       100 ~v~R~  104 (104)
T 3sfj_A          100 LVTRQ  104 (104)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            98873

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=4.9e-11  Score=101.40  Aligned_cols=81  Identities=25%  Similarity=0.373  Sum_probs=72.1

Q ss_pred             CCCceEEEeccCC---ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          48 EPDPRFITFQKEG---SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        48 ~~~~r~v~l~k~g---~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .|.++.+.+.+..   +|||.+.+  ..+++|..|.++|||+ +||++||+|++|||.++.++++.++...++..++.|.
T Consensus         6 ~~~~~~v~l~~~~~~~~~G~~l~~--~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~   82 (96)
T 2edv_A            6 SGVRHTVKIDKDTLLQDYGFHISE--SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLS   82 (96)
T ss_dssp             SCEEEEEEECCCSSSCSCSBCCCS--SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEE
T ss_pred             CCccEEEEEEECCCCCcccEEEec--CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4667888888764   79999876  4689999999999996 9999999999999999999999999998888899999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|+.
T Consensus        83 l~v~R~~   89 (96)
T 2edv_A           83 ITVVRCT   89 (96)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999865

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=5.5e-10  Score=93.68  Aligned_cols=65  Identities=20%  Similarity=0.374  Sum_probs=59.5

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      ++|||.+.++     +|..|.++|||+++||++||+|++|||.++.+.++.++...++..++.+.|+|.+
T Consensus        24 ~~lG~~~~~G-----~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p   88 (90)
T 1y7n_A           24 YQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP   88 (90)
T ss_dssp             SCCCEEEETT-----EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             cccCeEecCC-----EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            5899998653     8999999999999999999999999999999999999999998888999999874

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.09  E-value=5.2e-10  Score=98.10  Aligned_cols=85  Identities=29%  Similarity=0.477  Sum_probs=70.4

Q ss_pred             CCCceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          48 EPDPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        48 ~~~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      .+..+.+.+.+.  .+|||++.++.  ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++.. ..+
T Consensus        13 ~~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v   91 (114)
T 1x5n_A           13 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSL   91 (114)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSE
T ss_pred             CCCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeE
Confidence            455677777554  48999999863  3589999999999999999999999999999999999987777777654 689


Q ss_pred             EEEEEeC-Ccc
Q psy9827         124 HLIVQNR-RDE  133 (627)
Q Consensus       124 ~L~v~r~-~~~  133 (627)
                      .|+|.|+ ...
T Consensus        92 ~l~v~r~~g~~  102 (114)
T 1x5n_A           92 TISIVAAAGRE  102 (114)
T ss_dssp             EEEECSSTTTH
T ss_pred             EEEEEcCCCCc
Confidence            9999876 443

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.09  E-value=6e-11  Score=102.21  Aligned_cols=84  Identities=24%  Similarity=0.390  Sum_probs=72.4

Q ss_pred             ceEEEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          51 PRFITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        51 ~r~v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      .+.+.+...++|||++.++.+  .+++|..|.++|||+++||++||+|++|||.++.++++.++...++..++.+.|+|.
T Consensus         6 ~~~v~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~   85 (103)
T 1v5l_A            6 SGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKID   85 (103)
T ss_dssp             CBCCEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEEC
T ss_pred             EEEEEEcCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence            445556566789999988753  479999999999999999999999999999999999999999888877999999999


Q ss_pred             eCCccc
Q psy9827         129 NRRDEY  134 (627)
Q Consensus       129 r~~~~~  134 (627)
                      |+....
T Consensus        86 R~g~~~   91 (103)
T 1v5l_A           86 RAETRL   91 (103)
T ss_dssp             CCTTTT
T ss_pred             ECCeEc
Confidence            876543

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.09  E-value=3.9e-10  Score=94.18  Aligned_cols=68  Identities=26%  Similarity=0.405  Sum_probs=62.2

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      ..+||.+.+    |++|..|.+||||+++| |++||+|++|||.++.+.++.++..+++..+..+.|++.+..
T Consensus        13 ~~~G~~~~~----gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~   81 (88)
T 3e17_A           13 EEYGLRLGS----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDL   81 (88)
T ss_dssp             CCCCEEEEE----EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC-
T ss_pred             CCCCEEEeC----CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCC
Confidence            479998875    69999999999999999 999999999999999999999999999988899999988643

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.09  E-value=4.2e-10  Score=94.34  Aligned_cols=82  Identities=17%  Similarity=0.198  Sum_probs=68.9

Q ss_pred             cEEEEEeecCCCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC--CeE
Q psy9827         199 TLRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKL  274 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~--~~v  274 (627)
                      ...|.|.|...+.||.|..+  ..+||++|.+|   +.+++++.|++||.|++|||+++.+++|.|++++|++.+  ..+
T Consensus         6 ~k~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~g---g~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~   82 (95)
T 3gge_A            6 EKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDG---GVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELF   82 (95)
T ss_dssp             EEEEEEECCSSCCCEEEECSSSSCCEEEEECTT---SHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEE
T ss_pred             EEEEEEEECCCCceEEEEcCCCCcEEEEEEcCC---ChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEE
Confidence            45788999876666666642  36999999988   578889999999999999999999999999999999854  489


Q ss_pred             EEEEEeCCC
Q psy9827         275 SLTIRREVP  283 (627)
Q Consensus       275 ~l~V~r~~~  283 (627)
                      +|++.++.+
T Consensus        83 ~L~lv~p~~   91 (95)
T 3gge_A           83 TMKLIEPKK   91 (95)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEECccc
Confidence            999888644

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.08  E-value=1.7e-10  Score=98.73  Aligned_cols=79  Identities=25%  Similarity=0.286  Sum_probs=68.0

Q ss_pred             ceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          51 PRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        51 ~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      ...+.+.+. .+|||.+.+.  .+++|..|.++|||+++||++||+|++|||.++.++++.++...++..+..|.|+|.|
T Consensus        16 ~~~v~l~~~~~g~G~~~~~~--~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R   93 (100)
T 1whd_A           16 KLQITIRRGKDGFGFTICCD--SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR   93 (100)
T ss_dssp             EEEEEEECCSSSSSCBCCCS--SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEE
T ss_pred             eEEEEEECCCCeeeEEEeCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            344566665 5899988765  5799999999999999999999999999999999999999988888777789999988


Q ss_pred             CC
Q psy9827         130 RR  131 (627)
Q Consensus       130 ~~  131 (627)
                      +.
T Consensus        94 ~~   95 (100)
T 1whd_A           94 VS   95 (100)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-11  Score=108.44  Aligned_cols=92  Identities=32%  Similarity=0.508  Sum_probs=75.9

Q ss_pred             CCCCccccccCCC---CceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhh-cCCCCCCEEEEECCEeCCCCC
Q psy9827          37 GSPDLFSIFFVEP---DPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGIT  108 (627)
Q Consensus        37 ~~~d~~~~~~~~~---~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~-aGL~~GD~Il~VnG~~v~~~~  108 (627)
                      .++|+++.++...   ..+.+.+.+.  ++|||++.++.+  .|++|..|.+||||++ +||++||+|++|||.++.+.+
T Consensus        11 ~~~~~~~~~me~~~~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~   90 (112)
T 2lob_A           11 SSGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK   90 (112)
Confidence            3567777766544   5567777665  489999998743  4799999999999999 899999999999999999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEE
Q psy9827         109 REEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus       109 ~~~~~~~l~~~g~~V~L~v~  128 (627)
                      ..++...++..++.++|+|.
T Consensus        91 ~~~~~~~l~~~~~~v~l~V~  110 (112)
T 2lob_A           91 HKEAVTILSQQRGEIEFEVV  110 (112)
Confidence            99998888877777888765

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=3e-10  Score=99.67  Aligned_cols=83  Identities=23%  Similarity=0.356  Sum_probs=69.9

Q ss_pred             CCceEEEeccCC----ceeEEEEccCC---CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy9827          49 PDPRFITFQKEG----SVGIRLTGGNK---VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQD  121 (627)
Q Consensus        49 ~~~r~v~l~k~g----~lG~~i~g~~~---~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~  121 (627)
                      ..++.+.+.+.+    +|||++.+..+   .+++|..|.++|||+++||++||+|++|||.++.++++.++...++.  .
T Consensus        14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~   91 (114)
T 2d8i_A           14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--P   91 (114)
T ss_dssp             CEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS--S
T ss_pred             CceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC--C
Confidence            356788888764    59999987532   47999999999999999999999999999999999988888777774  4


Q ss_pred             eeEEEEEeCCcc
Q psy9827         122 QIHLIVQNRRDE  133 (627)
Q Consensus       122 ~V~L~v~r~~~~  133 (627)
                      .+.|+|.|.+..
T Consensus        92 ~v~l~v~R~p~~  103 (114)
T 2d8i_A           92 SLGLLVRTYPEL  103 (114)
T ss_dssp             EEEEEEEECCCS
T ss_pred             cEEEEEEECCCC
Confidence            899999986644

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.07  E-value=4.9e-10  Score=107.81  Aligned_cols=83  Identities=22%  Similarity=0.441  Sum_probs=73.5

Q ss_pred             CCceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      +..+.+.+.+.  ++|||++.++.  ..|++|..|.+||||+++||++||+|++|||.++.++++.++...++. +..|.
T Consensus        83 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~  161 (192)
T 3k1r_A           83 RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVS  161 (192)
T ss_dssp             SSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEE
T ss_pred             CceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEE
Confidence            35677888876  48999998863  358999999999999999999999999999999999999999998888 99999


Q ss_pred             EEEEeCCc
Q psy9827         125 LIVQNRRD  132 (627)
Q Consensus       125 L~v~r~~~  132 (627)
                      |+|.|.+.
T Consensus       162 l~v~r~g~  169 (192)
T 3k1r_A          162 IKVRHIGL  169 (192)
T ss_dssp             EEEEECCE
T ss_pred             EEEEECCc
Confidence            99998654

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.06  E-value=9e-10  Score=98.65  Aligned_cols=87  Identities=31%  Similarity=0.499  Sum_probs=74.1

Q ss_pred             CCCCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCee
Q psy9827          47 VEPDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL-QDQI  123 (627)
Q Consensus        47 ~~~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-g~~V  123 (627)
                      ..+.++.+.+.+. .+|||++.++. ..|++|..|.++|||+++||++||+|++|||.++.++++.++...++.. +..+
T Consensus         6 ~~~~~r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   85 (128)
T 2kjd_A            6 TMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETK   85 (128)
T ss_dssp             TTCCCEEEEEECCSSSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEE
T ss_pred             CCCCcEEEEEecCCCcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEE
Confidence            4568899999886 58999998865 3589999999999999999999999999999999999888888888754 5567


Q ss_pred             EEEEEeCCcc
Q psy9827         124 HLIVQNRRDE  133 (627)
Q Consensus       124 ~L~v~r~~~~  133 (627)
                      .|++.|++..
T Consensus        86 ~l~v~R~g~~   95 (128)
T 2kjd_A           86 LLVVDRETDE   95 (128)
T ss_dssp             EEEECHHHHH
T ss_pred             EEEEEeCCcc
Confidence            7888876543

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.05  E-value=7.7e-11  Score=124.15  Aligned_cols=128  Identities=22%  Similarity=0.261  Sum_probs=96.5

Q ss_pred             cccCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCceEEE----ec-----cCCceeEEEEccC---
Q psy9827          11 FQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGGN---   70 (627)
Q Consensus        11 ~~~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~~---   70 (627)
                      +.+++ ++|.++|+       |++|||+ ++.....+...+++|++|-.....    +.     ..+.||+++....   
T Consensus       168 ~i~~da~i~~G~SGGPLvn~~G~vvGI~-s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g~~~~~~lGi~~~~~~~~~  246 (348)
T 3qo6_A          168 VIQTDAAINPGNSGGPLLDSSGTLIGIN-TAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFAPDQSVE  246 (348)
T ss_dssp             EEEECSCCCTTCTTCEEECTTSCEEEEE-EEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHSSCCCEECCCEECCTTTTT
T ss_pred             EEEEeCCcCCCCcHHHhhCCCCeEEEEE-EeeecCCCCcccEEEEEEecchHHHHHHHHhCCceeeeecCcEEccchhhh
Confidence            34455 88888774       6778999 888777766778888888543321    11     1357999886532   


Q ss_pred             ---CCCEEEEEeCCCChhhhcCCCC-----------CCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccce
Q psy9827          71 ---KVGIFVTAVQPGSPASLQGLQP-----------GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEH  136 (627)
Q Consensus        71 ---~~gi~V~~V~~gspA~~aGL~~-----------GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~  136 (627)
                         ..|++|..|.++|||++|||++           ||+|++|||.++.++.+......-...|++|+|+|.|++.....
T Consensus       247 ~~~~~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~  326 (348)
T 3qo6_A          247 QLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKI  326 (348)
T ss_dssp             TTTCSSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHHHHHHHTTCCTTCEEEEEEECSSSEEEE
T ss_pred             hcCCceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHHHHHHHHHhCCCcCEEEEEEEECCEEEEE
Confidence               2689999999999999999999           99999999999999866554433346789999999998876655


Q ss_pred             eee
Q psy9827         137 VVA  139 (627)
Q Consensus       137 ~v~  139 (627)
                      .++
T Consensus       327 ~v~  329 (348)
T 3qo6_A          327 SVT  329 (348)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=1.5e-09  Score=92.09  Aligned_cols=81  Identities=20%  Similarity=0.315  Sum_probs=69.0

Q ss_pred             CCceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeeEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQIHL  125 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~V~L  125 (627)
                      ++...+.+.+. .+|||++.+. ..|++|..|.++  |+++||++||+|++|||.++.++++.++...++.  .++.|.|
T Consensus         9 ~~~~~v~l~~~~~g~G~~i~~~-~~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   85 (96)
T 1ujv_A            9 AELMTLTIVKGAQGFGFTIADS-PTGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSL   85 (96)
T ss_dssp             CCCEEEEEECCSSSSSEEEEEE-TTEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEE
T ss_pred             ceEEEEEEEeCCCceeEEEEcC-CCCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            46677778776 5899999754 348999999983  7899999999999999999999999999988885  4789999


Q ss_pred             EEEeCCc
Q psy9827         126 IVQNRRD  132 (627)
Q Consensus       126 ~v~r~~~  132 (627)
                      +|.|+..
T Consensus        86 ~v~R~g~   92 (96)
T 1ujv_A           86 IIHRGSG   92 (96)
T ss_dssp             EEECCSS
T ss_pred             EEEECCC
Confidence            9998653

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.03  E-value=2.1e-09  Score=93.82  Aligned_cols=87  Identities=21%  Similarity=0.335  Sum_probs=72.1

Q ss_pred             eEEEeccC--CceeEEEEccC-CCCEEEEEeCCCChhhhcCC-CCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCeeEEE
Q psy9827          52 RFITFQKE--GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGL-QPGDKILKVNDMDMKGITREEAVLFLLS-LQDQIHLI  126 (627)
Q Consensus        52 r~v~l~k~--g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL-~~GD~Il~VnG~~v~~~~~~~~~~~l~~-~g~~V~L~  126 (627)
                      ..+.+.+.  ++|||++.+.. ..+++|..|.++|||+++|| ++||+|++|||.++.++++.++...+.. .+..+.|+
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~   82 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL   82 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred             EEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEE
Confidence            34566554  58999998864 35899999999999999997 9999999999999999888888877774 57899999


Q ss_pred             EEeCCcccceee
Q psy9827         127 VQNRRDEYEHVV  138 (627)
Q Consensus       127 v~r~~~~~~~~v  138 (627)
                      +.|++......+
T Consensus        83 v~R~g~~~~~~~   94 (112)
T 1qau_A           83 ILRGPEGFTTHL   94 (112)
T ss_dssp             EEECCTTSEEEE
T ss_pred             EEeCCcccceEe
Confidence            999876654443

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.03  E-value=1e-09  Score=105.65  Aligned_cols=69  Identities=42%  Similarity=0.670  Sum_probs=64.4

Q ss_pred             CceeEEEEccC----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          60 GSVGIRLTGGN----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        60 g~lG~~i~g~~----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      ++|||+|.|+.          +.|++|..|.+||||++ ||++||+|++|||.++.++++.+++..++..+..|.|+|.|
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            57999999963          46899999999999999 99999999999999999999999999999888899999998

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.02  E-value=5.6e-10  Score=93.19  Aligned_cols=81  Identities=43%  Similarity=0.687  Sum_probs=66.6

Q ss_pred             EEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEE
Q psy9827         200 LRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  279 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~  279 (627)
                      +.|+|.+......||+....|++|..|.+|+   +|++.+.|++||+|++|||+++.+++++++..+|+.+++.++|++.
T Consensus         2 l~v~l~~~~~~~~~G~~~~~gv~V~~V~~gs---pA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~   78 (88)
T 3e17_A            2 IGVLLMKSRANEEYGLRLGSQIFVKEMTRTG---LATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVL   78 (88)
T ss_dssp             EEEEEECBTTBCCCCEEEEEEEEEEEECTTS---HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEC
T ss_pred             eEEEEEeCCCCCCCCEEEeCCEEEEEECCCC---HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEe
Confidence            4567777666678888887899999999873   3333344999999999999999999999999999999999999998


Q ss_pred             eCCC
Q psy9827         280 REVP  283 (627)
Q Consensus       280 r~~~  283 (627)
                      +...
T Consensus        79 ~~~~   82 (88)
T 3e17_A           79 RDLE   82 (88)
T ss_dssp             CC--
T ss_pred             CCCc
Confidence            7543

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=99.01  E-value=9.2e-10  Score=99.50  Aligned_cols=97  Identities=25%  Similarity=0.342  Sum_probs=72.5

Q ss_pred             cccccCCCCceEEE----ecc-----CCceeEEEEccC----------------CCCEEEEEeCCCChhhhcCCCCCCEE
Q psy9827          42 FSIFFVEPDPRFIT----FQK-----EGSVGIRLTGGN----------------KVGIFVTAVQPGSPASLQGLQPGDKI   96 (627)
Q Consensus        42 ~~~~~~~~~~r~v~----l~k-----~g~lG~~i~g~~----------------~~gi~V~~V~~gspA~~aGL~~GD~I   96 (627)
                      .|++|++|......    |.+     .++||+++....                ..|++|..|.++|||+ +||++||+|
T Consensus         2 ~GigFAIP~~~~~~v~~~L~~~G~v~r~~LGv~~~~~~~~~~~~~~~lgl~~~~~~g~~V~~V~~~spA~-aGL~~GD~I   80 (134)
T 2l97_A            2 EGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPAN-GHLEKYDVI   80 (134)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCEEEESSSSCHHHHHHHSSCSSSCSCEEEEECSTTSGGG-TTSCSSCEE
T ss_pred             CcEEEEeEHHHHHHHHHHHHHcCCEeeeEeeEEEEECCchhHHHHHHcCCCcCCCCCEEEEEECCCCchH-HCCCCCCEE
Confidence            46788888664322    222     357999887532                3689999999999999 999999999


Q ss_pred             EEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827          97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        97 l~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~  139 (627)
                      ++|||.++.++.+..........++.+.|+|.|++......+.
T Consensus        81 ~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~  123 (134)
T 2l97_A           81 TKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIK  123 (134)
T ss_dssp             EEETTEECCCHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEEE
T ss_pred             EEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence            9999999998765544433334789999999998766554443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.01  E-value=1.4e-09  Score=104.97  Aligned_cols=146  Identities=11%  Similarity=0.026  Sum_probs=102.8

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCC-------CCCCCHHHHHHHHhccc-----ccCCcee---
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRK-------FNFILWATIKDTAMYQS-----SKEPGMY---  508 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~-------~~Fvs~e~f~~~i~~~~-----~~~~~~Y---  508 (627)
                      ...++|+||+   |+|+.+.|....|.....       +.+       .+|.+...|..+...+.     .+.+++|   
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTE   86 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccch
Confidence            4679999999   999999998877732221       111       14778888888764332     2346777   


Q ss_pred             --hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----C--CCCHHHHHHHHHHHHHHHHHhcCc
Q psy9827         509 --QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----K--DIKKEVKIKLFEQSQKLEKVWSHV  577 (627)
Q Consensus       509 --~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~--~~~e~~~~~~~~~~~~~e~~~~~~  577 (627)
                        .+++++++|++|++|++ ..+ ..+.....+.  +||+.||+.+.+     +  +.+++++++++.++. .+.++.+.
T Consensus        87 ~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~--~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~~~  163 (205)
T 3tr0_A           87 KDWVLRQLKAGRDVLLEIDWQGARQIRELFPPAL--SIFILPPSIEALRERLIKRRQDDTAIIEQRLALAR-EEMAHYKE  163 (205)
T ss_dssp             HHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCE--EEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHH-HHHTTGGG
T ss_pred             HHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcE--EEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHhcccC
Confidence              78899999999999999 444 2221123346  899999984332     2  334444666666653 35567788


Q ss_pred             ccEEEECCCHHHHHHHHHHHHHhhC
Q psy9827         578 FTGTITLSGVDVWYRKTRELIEKQQ  602 (627)
Q Consensus       578 fd~vi~n~~l~~~~~~l~~~i~~~~  602 (627)
                      ||+||+|+++++++++|..+|....
T Consensus       164 ~d~vi~n~~~~~~~~~l~~~i~~~~  188 (205)
T 3tr0_A          164 FDYLVVNDNFDQAVQNLIHIISAER  188 (205)
T ss_dssp             CSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997643

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.00  E-value=2.7e-09  Score=89.58  Aligned_cols=70  Identities=26%  Similarity=0.442  Sum_probs=60.2

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE  133 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~  133 (627)
                      ..|||.+.    .|++|..|.++|||+++| |++||+|++|||.++.+++..++...+...+..+.|++.|++..
T Consensus        15 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~   85 (92)
T 3cyy_A           15 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERA   85 (92)
T ss_dssp             SCCCEEEE----EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC----
T ss_pred             CCCCEEEe----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCce
Confidence            37898876    479999999999999999 99999999999999999999998888887778999999886644

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.00  E-value=6.5e-10  Score=99.06  Aligned_cols=80  Identities=16%  Similarity=0.225  Sum_probs=69.1

Q ss_pred             CceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeeEE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQIHL  125 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~V~L  125 (627)
                      ....+.+.+. .+|||++.+. ..+++|..|.+||||+++| |++||+|++|||.++.+.++.++...++.  .++.|+|
T Consensus        27 ~~~~~~l~k~~~glG~~i~~~-~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l  105 (126)
T 1wif_A           27 KVIQTKLTVGNLGLGLVVIQN-GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQI  105 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEEE-TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEE
T ss_pred             ceEEEEEecCCceEeEEEEcC-CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEE
Confidence            3445566665 5899998874 4579999999999999999 99999999999999999999999999885  6899999


Q ss_pred             EEEeC
Q psy9827         126 IVQNR  130 (627)
Q Consensus       126 ~v~r~  130 (627)
                      +|.|+
T Consensus       106 ~V~R~  110 (126)
T 1wif_A          106 KAYRG  110 (126)
T ss_dssp             EEESS
T ss_pred             EEEEC
Confidence            99986

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.99  E-value=1.4e-09  Score=89.22  Aligned_cols=78  Identities=15%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             ccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT  277 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~  277 (627)
                      .+..|+|.|... .+|||....+. |.+|.+|    ++|..+||++||+|++|||+++.++++++++++|+.++..++|+
T Consensus         4 ~~r~v~l~k~~~-g~~Gf~i~~g~-I~~v~~g----spA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~   77 (82)
T 1r6j_A            4 DPRTITMHKDST-GHVGFIFKNGK-ITSIVKD----SSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT   77 (82)
T ss_dssp             CCEEEEEECCTT-SCCCEEEETTE-EEEECTT----SHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             ceEEEEEEECCC-CCeEEEEECCE-EEEecCC----CHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEE
Confidence            457888888643 34666665554 7889876    45556679999999999999999999999999999989999999


Q ss_pred             EEeC
Q psy9827         278 IRRE  281 (627)
Q Consensus       278 V~r~  281 (627)
                      |.+.
T Consensus        78 v~p~   81 (82)
T 1r6j_A           78 IMPA   81 (82)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9873

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.99  E-value=3.7e-10  Score=98.60  Aligned_cols=81  Identities=31%  Similarity=0.473  Sum_probs=68.2

Q ss_pred             CCceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC-CeeEEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQ-DQIHLI  126 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g-~~V~L~  126 (627)
                      ..+|.|.+.+. ++|||++.+.  .+++|..|.++|||+++||++||+|++|||.++.++++.++...++..+ ..+.|+
T Consensus        14 ~~~r~v~l~~~~~~~G~~l~~~--~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~   91 (111)
T 1vae_A           14 SPPRGIHFTVEEGDLGFTLRGN--TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMK   91 (111)
T ss_dssp             CCCCCCCEECCSSCCSCCEESS--SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEE
T ss_pred             CCCeEEEEEcCCCcccEEEeCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEE
Confidence            35677777775 5899999765  4789999999999999999999999999999999888888888887544 469999


Q ss_pred             EEeCC
Q psy9827         127 VQNRR  131 (627)
Q Consensus       127 v~r~~  131 (627)
                      |.+..
T Consensus        92 V~~~~   96 (111)
T 1vae_A           92 VVSLL   96 (111)
T ss_dssp             EECEE
T ss_pred             EEecC
Confidence            88643

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.99  E-value=1.8e-09  Score=90.33  Aligned_cols=70  Identities=24%  Similarity=0.330  Sum_probs=59.7

Q ss_pred             ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCeeEEEEEeCC
Q psy9827          61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL--SLQDQIHLIVQNRR  131 (627)
Q Consensus        61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~--~~g~~V~L~v~r~~  131 (627)
                      +|||++... ..|++|..|.++|||+++||++||+|++|||.++.+.+..++...+.  ..+..+.|+|.|++
T Consensus        18 ~lG~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           18 DFGFTIKWD-IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             CCSEEEEEE-TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cccEEEEec-CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            799998754 45899999999999999999999999999999997667777766665  36889999998753

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.98  E-value=1.9e-09  Score=90.17  Aligned_cols=84  Identities=14%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      .+.+..|.|.++..+.||.+..+   .|++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|+..+.
T Consensus         2 ~~~~r~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   77 (90)
T 2he4_A            2 MLRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPG----SPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARED   77 (90)
T ss_dssp             TTCCEEEEEECBTTBCCEEEEECSSSSSEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSS
T ss_pred             CCCcEEEEEEECCCCccEEEEccCCCCCEEEEEECCC----ChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            35667889998876666666554   38999999887    455667899999999999999999999999999999888


Q ss_pred             eEEEEEEeCCC
Q psy9827         273 KLSLTIRREVP  283 (627)
Q Consensus       273 ~v~l~V~r~~~  283 (627)
                      .+.|.|.|...
T Consensus        78 ~v~l~v~r~~~   88 (90)
T 2he4_A           78 EARLLVVGPST   88 (90)
T ss_dssp             EEEEEEECCCC
T ss_pred             cEEEEEEccCC
Confidence            99999998653

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.98  E-value=2.5e-09  Score=90.53  Aligned_cols=77  Identities=23%  Similarity=0.272  Sum_probs=64.4

Q ss_pred             eEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhc---CCCeeEEEE
Q psy9827          52 RFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS---LQDQIHLIV  127 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~---~g~~V~L~v  127 (627)
                      +.+.+... .++||.+... ..+++|..|.+||||++|||++||+|++|||.++...+..++...+..   .+..|.|.|
T Consensus        19 ~~l~l~~~~~g~G~~l~~~-~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV   97 (101)
T 3qik_A           19 KRLLILPQEEDYGFDIEEK-NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLV   97 (101)
T ss_dssp             EEEEECCCSSSSSEEEEEE-TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEeCCCcccEEEEcc-CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEE
Confidence            44555554 5899999874 457899999999999999999999999999999987778888777765   589999988


Q ss_pred             Ee
Q psy9827         128 QN  129 (627)
Q Consensus       128 ~r  129 (627)
                      ..
T Consensus        98 ~~   99 (101)
T 3qik_A           98 AT   99 (101)
T ss_dssp             EC
T ss_pred             ec
Confidence            74

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.98  E-value=9e-10  Score=98.55  Aligned_cols=90  Identities=21%  Similarity=0.349  Sum_probs=75.9

Q ss_pred             CCCceEEEeccC--CceeEEEEccCC-CCEEEEEeCCCChhhhcCC-CCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCe
Q psy9827          48 EPDPRFITFQKE--GSVGIRLTGGNK-VGIFVTAVQPGSPASLQGL-QPGDKILKVNDMDMKGITREEAVLFLLS-LQDQ  122 (627)
Q Consensus        48 ~~~~r~v~l~k~--g~lG~~i~g~~~-~gi~V~~V~~gspA~~aGL-~~GD~Il~VnG~~v~~~~~~~~~~~l~~-~g~~  122 (627)
                      .+..+.+.+.+.  ++|||++.+..+ .+++|..|.+||||+++|| ++||+|++|||.++.+++..++...++. .+..
T Consensus         6 ~~~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~   85 (127)
T 1b8q_A            6 EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASET   85 (127)
T ss_dssp             CCCSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSC
T ss_pred             CCceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCe
Confidence            456788888765  489999988643 5899999999999999997 9999999999999999988888888874 5689


Q ss_pred             eEEEEEeCCccccee
Q psy9827         123 IHLIVQNRRDEYEHV  137 (627)
Q Consensus       123 V~L~v~r~~~~~~~~  137 (627)
                      +.|++.|++......
T Consensus        86 v~l~v~R~g~~~~~~  100 (127)
T 1b8q_A           86 HVVLILRGPEGFTTH  100 (127)
T ss_dssp             EEEEEECCCCSEEEC
T ss_pred             EEEEEEeCCceEEEE
Confidence            999999877654433

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.98  E-value=1.3e-09  Score=89.71  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=66.8

Q ss_pred             ccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT  277 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~  277 (627)
                      .+..|.|.++..+.+|.+....+++|..|.++    ++|..+||++||+|++|||+++.+++++++..+++..++.++|+
T Consensus         2 ~~r~v~l~~~~~g~G~~~~~~~~~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   77 (83)
T 2kv8_A            2 RVRSVEVARGRAGYGFTLSGQAPCVLSCVMRG----SPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMV   77 (83)
T ss_dssp             CEEEEEECCCSSCCSCBCCCSSSCBCCBCCTT----STTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEE
T ss_pred             CcEEEEEEeCCCcccEEEEcCCCeEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            45678888876555555555678999999887    45566789999999999999999999999999998887889999


Q ss_pred             EEeCC
Q psy9827         278 IRREV  282 (627)
Q Consensus       278 V~r~~  282 (627)
                      |.|+.
T Consensus        78 v~R~~   82 (83)
T 2kv8_A           78 IAEGV   82 (83)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            98863

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=98.98  E-value=1.6e-09  Score=90.87  Aligned_cols=83  Identities=19%  Similarity=0.296  Sum_probs=68.6

Q ss_pred             ccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT  277 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~  277 (627)
                      ....|.|.++..+.||.+....+++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..++.+.|+
T Consensus         3 ~~r~v~l~~~~~g~G~~l~~~~~~~V~~V~~~----spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~   78 (91)
T 2f5y_A            3 RYRQITIPRGKDGFGFTICCDSPVRVQAVDSG----GPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL   78 (91)
T ss_dssp             EEEEEEEECBTTBTSEEEECSSSCEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             ceEEEEEEeCCCCccEEEecCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            45678888876666666666678999999887    45666789999999999999999999999999999888899999


Q ss_pred             EEeCCCC
Q psy9827         278 IRREVPR  284 (627)
Q Consensus       278 V~r~~~~  284 (627)
                      |.|+...
T Consensus        79 v~R~~~~   85 (91)
T 2f5y_A           79 VWRMVPQ   85 (91)
T ss_dssp             EEECC--
T ss_pred             EEeCCCC
Confidence            9997643

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.98  E-value=4.6e-10  Score=116.75  Aligned_cols=127  Identities=22%  Similarity=0.190  Sum_probs=90.2

Q ss_pred             cccCC-CCCCCCC-------CCceeeeecccccCCCC---CccccccCCCCceEEE----ec-----cCCceeEEEEccC
Q psy9827          11 FQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSP---DLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGGN   70 (627)
Q Consensus        11 ~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~---d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~~   70 (627)
                      +.+++ ++|.++|       .|++|||+ ++.....+   ...+++|++|......    +.     ..+.||+.+....
T Consensus       153 ~i~~d~~~~~G~SGGPl~~~~G~vvGI~-s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~~~~~~lGi~~~~~~  231 (318)
T 1te0_A          153 FLQTDASINHGNSGGALVNSLGELMGIN-TLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIA  231 (318)
T ss_dssp             SEEESSCCCTTTTTSEEECTTCCEEEEE-ECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHSSCCCEECCEEEEECS
T ss_pred             EEEECCCCCCCCCcCceECCCCeEEEEE-eeeeccCCccccccceEEeccHHHHHHHHHHHHHcCCcccccceeEeeecc
Confidence            34444 7888877       47789999 66554322   3456777777443221    11     1357999887631


Q ss_pred             -----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          71 -----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        71 -----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                                 ..|++|..|.++|||+++||++||+|++|||.++.++.+......-...++.+.|+|.|++......+
T Consensus       232 ~~~~~~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  310 (318)
T 1te0_A          232 PLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQV  310 (318)
T ss_dssp             CCCSSSSCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHHTSCTTCEEEEEEESSSCEEEEEE
T ss_pred             hhHHHhccCCCCCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence                       36899999999999999999999999999999998875444332222578999999999876655444

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.97  E-value=1.3e-09  Score=96.48  Aligned_cols=86  Identities=19%  Similarity=0.261  Sum_probs=67.2

Q ss_pred             CCccEEEEEeecCC-CCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSRK-KDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       196 ~~~~~~V~L~k~~~-~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      .+..+.|.|.|+.. +.||.+..+       .+++|..|.++   ++|++.++|++||+|++|||+++.++++.+++.++
T Consensus        22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~---spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l   98 (120)
T 2iwo_A           22 SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPT---GVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL   98 (120)
T ss_dssp             ---CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCC---CHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            44567888988753 566666654       27999999987   34444569999999999999999999999999999


Q ss_pred             HcCCCeEEEEEEeCCCC
Q psy9827         268 DSSKEKLSLTIRREVPR  284 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~~~  284 (627)
                      +..++.++|+|.|++..
T Consensus        99 ~~~~~~v~l~v~r~g~~  115 (120)
T 2iwo_A           99 KNASGSIEMQVVAGGDV  115 (120)
T ss_dssp             HHCCSEEEEEEECCTTS
T ss_pred             HcCCCeEEEEEEECCcc
Confidence            99999999999997653

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.97  E-value=4.2e-09  Score=91.62  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=67.5

Q ss_pred             CccEEEEEeecCCCCCeeeeeC-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCe
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEK  273 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~  273 (627)
                      +..++|.|.|+..+.+|.+..+ .|.+|.+|.+      ++..++|++||+|++|||+++.+++|+|++.+|+.+  +..
T Consensus        11 ~~~~~V~L~Kg~~G~GFsI~~~~~g~~V~~I~~------~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~   84 (113)
T 3soe_A           11 GLLVTIPLIKGPKGFGFAIADSPTGQKVKMILD------SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGAD   84 (113)
T ss_dssp             CEEEEEEEECBTTBSSEEEEEETTEEEEEEESC------GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCE
T ss_pred             CCEEEEEEEECCCcccEEEeCCCCCcEEEEecC------hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            3567889999866666666443 4788999964      356789999999999999999999999999999986  569


Q ss_pred             EEEEEEeCCCCC
Q psy9827         274 LSLTIRREVPRP  285 (627)
Q Consensus       274 v~l~V~r~~~~~  285 (627)
                      ++|+|.|++...
T Consensus        85 v~L~V~R~g~~~   96 (113)
T 3soe_A           85 VPLLILRGGPPS   96 (113)
T ss_dssp             EEEEEEESSCC-
T ss_pred             EEEEEEECCccC
Confidence            999999987643

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=3.7e-09  Score=94.68  Aligned_cols=87  Identities=33%  Similarity=0.515  Sum_probs=69.5

Q ss_pred             CceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      ..+.+.+...  +.|||++.++..  .|++|..|.+||||+++||++||+|++|||.++.++++.+++..++. +..+.|
T Consensus        20 ~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~v~l   98 (128)
T 1uf1_A           20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS-SRHLIL   98 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSEEEE
T ss_pred             cEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCeEEE
Confidence            3444554432  579999988642  48999999999999999999999999999999999999766666655 579999


Q ss_pred             EEEeCCccccee
Q psy9827         126 IVQNRRDEYEHV  137 (627)
Q Consensus       126 ~v~r~~~~~~~~  137 (627)
                      +|.|++......
T Consensus        99 ~v~R~g~~~~~~  110 (128)
T 1uf1_A           99 TVKDVGRLPHAR  110 (128)
T ss_dssp             EEECCSCCSSCS
T ss_pred             EEEECCcccccc
Confidence            999877654433

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.96  E-value=6.4e-10  Score=115.96  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=91.2

Q ss_pred             ccccCC-CCCCCCC-------CCceeeeecccccCCC-------CCccccccCCCCceEEE----ecc-----CCceeEE
Q psy9827          10 TFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGS-------PDLFSIFFVEPDPRFIT----FQK-----EGSVGIR   65 (627)
Q Consensus        10 ~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~-------~d~~~~~~~~~~~r~v~----l~k-----~g~lG~~   65 (627)
                      .+.+++ ++|.++|       .|++|||+ ++.....       +...+++|++|......    +.+     .++||+.
T Consensus       156 ~~i~~d~~~~~G~SGGPlv~~~G~vvGI~-s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g~~~~~~lGi~  234 (324)
T 1y8t_A          156 DAIQTDAAINPGNSGGALVNMNAQLVGVN-SAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGKASHASLGVQ  234 (324)
T ss_dssp             EEEEECSCCCTTCTTEEEECTTSEEEEEE-EEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHSCCCCEECCEE
T ss_pred             CEEEEcCCCCCCCccCcEECCCCeEEEEE-eeecccCcccccccccccceEEecCHHHHHHHHHHHHHcCCccccccceE
Confidence            344444 7888877       47788999 6665432       23457778888543221    111     3479999


Q ss_pred             EEcc-CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe-CCcccceee
Q psy9827          66 LTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN-RRDEYEHVV  138 (627)
Q Consensus        66 i~g~-~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r-~~~~~~~~v  138 (627)
                      +... ...|++|..|.++|||+++||++||+|++|||.++.++.+..........++.|+|+|.| ++......+
T Consensus       235 ~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v  309 (324)
T 1y8t_A          235 VTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPSGGSRTVQV  309 (324)
T ss_dssp             EESCSSSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEECSSCCEEEEEE
T ss_pred             eeeccCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCCCEEEEEE
Confidence            8764 356899999999999999999999999999999999875544433323578999999998 766544443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.95  E-value=1.3e-09  Score=107.72  Aligned_cols=148  Identities=15%  Similarity=0.121  Sum_probs=95.8

Q ss_pred             CCceEEEeCcc---HHHHHHHHh-hhCCCCccc-------CCC-------CCCCCHHHHHHHHhcccc-----cCCcee-
Q psy9827         453 FIRPVVLFGPV---ADLARDKLL-KDFPDKFSA-------PRK-------FNFILWATIKDTAMYQSS-----KEPGMY-  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll-~~~p~~f~~-------~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y-  508 (627)
                      ..+.++|+||+   |+|+.+.|. ...|..+..       +..       .+|++.+.|..+...+.+     +.+++| 
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYG  105 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccCC
Confidence            35789999999   999999998 766542221       111       258889999988765432     357777 


Q ss_pred             ----hHHhHHhCCCcEEEecC-Cce--eccccCCC-CceeEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHHH
Q psy9827         509 ----QGKDSMYQGKDSMYQGK-ESM--YQGKDSMY-QGKDSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEKV  573 (627)
Q Consensus       509 ----~V~~v~~~gk~ciLdi~-~~l--~~~~~~~~-P~~~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~~  573 (627)
                          .+++++++|+.|++|++ ...  ..   +.+ |...+||+.||+.+.+     .|  .+++++++++++... +.+
T Consensus       106 ~~~~~i~~~~~~~~~vild~~~~g~~~~~---~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~-~~~  181 (231)
T 3lnc_A          106 VPRKNLEDNVDKGVSTLLVIDWQGAFKFM---EMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAF-EIS  181 (231)
T ss_dssp             EECTTHHHHHHHTCEEEEECCHHHHHHHH---HHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHH-HHT
T ss_pred             CCHHHHHHHHHcCCeEEEEcCHHHHHHHH---HhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHh
Confidence                69999999999999999 333  33   233 5434899999984322     22  344445555555433 445


Q ss_pred             hcCcccEEEECCCHHHHHHHHHHHHHhhCCC
Q psy9827         574 WSHVFTGTITLSGVDVWYRKTRELIEKQQSS  604 (627)
Q Consensus       574 ~~~~fd~vi~n~~l~~~~~~l~~~i~~~~~~  604 (627)
                      +.+.||+||+|+++++++++|..+|.....+
T Consensus       182 ~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~  212 (231)
T 3lnc_A          182 HCEAYDYVIVNEDIEETADRISNILRAEQMK  212 (231)
T ss_dssp             TGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred             hhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence            6778999999999999999999999876544

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=3.4e-09  Score=91.78  Aligned_cols=87  Identities=20%  Similarity=0.310  Sum_probs=69.7

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEA  263 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~  263 (627)
                      ....+.|.|.|...+.+|.+..+            .+++|..|.+++   +|++.++|++||+|++|||+++.++++.++
T Consensus         6 ~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~s---pA~~aggL~~GD~Il~vng~~v~~~~~~~~   82 (107)
T 1uhp_A            6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSG---PAAKEGGLQIHDRIIEVNGRDLSRATHDQA   82 (107)
T ss_dssp             SSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSS---HHHHTTCCCSSCEEEEETTEECTTCCHHHH
T ss_pred             CcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCC---hHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            45677888988755555555542            389999998873   333344999999999999999999999999


Q ss_pred             HHHHHcCCCeEEEEEEeCCCCC
Q psy9827         264 RKLIDSSKEKLSLTIRREVPRP  285 (627)
Q Consensus       264 ~~~l~~~~~~v~l~V~r~~~~~  285 (627)
                      +.+++..++.+.|+|.|....+
T Consensus        83 ~~~~~~~~~~v~l~v~R~~~~~  104 (107)
T 1uhp_A           83 VEAFKTAKEPIVVQVLRRTSGP  104 (107)
T ss_dssp             HHHHHHCCSSEEEEEEECCSSC
T ss_pred             HHHHHcCCCcEEEEEEeCCCCC
Confidence            9999998899999999976543

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=3.5e-09  Score=94.34  Aligned_cols=83  Identities=23%  Similarity=0.516  Sum_probs=66.8

Q ss_pred             eEEEeccC---CceeEEEEccCC----CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCe
Q psy9827          52 RFITFQKE---GSVGIRLTGGNK----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS-LQDQ  122 (627)
Q Consensus        52 r~v~l~k~---g~lG~~i~g~~~----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~-~g~~  122 (627)
                      +.+.+.+.   .+|||++.....    .|++|..|.++|||+++| |++||+|++|||.++.+  ..++...++. .+..
T Consensus        21 ~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~   98 (124)
T 1wh1_A           21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKN   98 (124)
T ss_dssp             CCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCS
T ss_pred             EEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCE
Confidence            44455444   379999998753    689999999999999999 99999999999999985  5566666664 4789


Q ss_pred             eEEEEEeCCcccce
Q psy9827         123 IHLIVQNRRDEYEH  136 (627)
Q Consensus       123 V~L~v~r~~~~~~~  136 (627)
                      |.|+|.|+...+..
T Consensus        99 v~l~v~R~g~~~~~  112 (124)
T 1wh1_A           99 FSLLIARPELQLDE  112 (124)
T ss_dssp             CCEEEEECSSCCCC
T ss_pred             EEEEEEECCEEeec
Confidence            99999997765443

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.93  E-value=2.4e-09  Score=94.34  Aligned_cols=84  Identities=23%  Similarity=0.378  Sum_probs=69.0

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      .+....|+|.|...+.||.+..+       .|++|..|.+++    +|..+| |++||+|++|||+++.++++.+++.++
T Consensus        23 ~~~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~s----pA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   98 (117)
T 2fne_A           23 MPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKG----AASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAIL   98 (117)
T ss_dssp             CCEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTS----HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCC----hHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            45677899998876666666553       379999999873    444445 999999999999999999999999999


Q ss_pred             HcCCCeEEEEEEeCCC
Q psy9827         268 DSSKEKLSLTIRREVP  283 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~~  283 (627)
                      +..++.++|+|.|++.
T Consensus        99 ~~~~~~v~l~v~R~g~  114 (117)
T 2fne_A           99 KRTKGTVTLMVLSSDE  114 (117)
T ss_dssp             HHCCSSEEEEEEECSC
T ss_pred             HcCCCeEEEEEEeCCc
Confidence            9988889999999754

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=2.6e-09  Score=89.07  Aligned_cols=81  Identities=17%  Similarity=0.229  Sum_probs=64.4

Q ss_pred             EEEEEeecC-CCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEE
Q psy9827         200 LRVQLSKSR-KKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL  276 (627)
Q Consensus       200 ~~V~L~k~~-~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l  276 (627)
                      ..|.|.|.. .+.||.+...  .+++|.+|.+++   +|++.++|++||+|++|||+++.+++++++.++|+...+.++|
T Consensus         3 r~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gs---pA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l   79 (88)
T 1kwa_A            3 RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGG---MIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF   79 (88)
T ss_dssp             EEEEEEECSSSCCCEEEECSCGGGEEEEEECTTS---HHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEE
T ss_pred             EEEEEEeCCCCceeEEEEeCCCCCEEEEEECCCC---HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEE
Confidence            457788764 4445555442  479999999873   3444489999999999999999999999999999988779999


Q ss_pred             EEEeCCC
Q psy9827         277 TIRREVP  283 (627)
Q Consensus       277 ~V~r~~~  283 (627)
                      +|.|+..
T Consensus        80 ~v~r~~~   86 (88)
T 1kwa_A           80 KIVPSYR   86 (88)
T ss_dssp             EEECCCC
T ss_pred             EEECCcC
Confidence            9988653

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.92  E-value=4.3e-09  Score=85.87  Aligned_cols=67  Identities=27%  Similarity=0.461  Sum_probs=59.3

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeC
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNR  130 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~  130 (627)
                      ..|||.+.    .|++|..|.++|||+++| |++||+|++|||.++.++++.++...+...+..+.|++.|+
T Consensus        13 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           13 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             CCCCEEEE----EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CCCCEEEe----CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            47898876    369999999999999999 99999999999999999999998888887777899998864

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.92  E-value=1.3e-08  Score=85.63  Aligned_cols=84  Identities=21%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             CCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      ......|.|.+...+.+|.+....+++|..|.++    ++|..+||++||+|++|||+++.++++.+++..++ .+..+.
T Consensus         6 ~~~~r~v~l~~~~~~~G~~l~~~~g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~   80 (93)
T 2dls_A            6 SGVQRCVIIQKDQHGFGFTVSGDRIVLVQSVRPG----GAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVA   80 (93)
T ss_dssp             CCCEEEEEEECSSSSCCEEEECSSSCEEEEECSS----STTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEE
T ss_pred             CCCCEEEEEEeCCCceeEEEeCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEE
Confidence            3456678888876555555555679999999887    45666789999999999999999998888888887 588999


Q ss_pred             EEEEeCCCC
Q psy9827         276 LTIRREVPR  284 (627)
Q Consensus       276 l~V~r~~~~  284 (627)
                      |+|.|+...
T Consensus        81 l~v~R~~~~   89 (93)
T 2dls_A           81 LTLLGSSSG   89 (93)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEECCCC
Confidence            999997643

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.91  E-value=4e-09  Score=94.80  Aligned_cols=85  Identities=21%  Similarity=0.334  Sum_probs=68.5

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      ....+.|.|.|...++||.+..+       .+++|..|.+|   ++|++.++|++||+|++|||+++.++++++++.+|+
T Consensus        27 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~g---s~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~  103 (130)
T 1i16_A           27 EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKG---AASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIK  103 (130)
T ss_dssp             SEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSS---CCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHH
T ss_pred             CCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34567788888766666666653       26999999987   344445599999999999999999999999999999


Q ss_pred             cCCC-eEEEEEEeCCC
Q psy9827         269 SSKE-KLSLTIRREVP  283 (627)
Q Consensus       269 ~~~~-~v~l~V~r~~~  283 (627)
                      ..++ .+.|+|.|...
T Consensus       104 ~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A          104 ALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             TSCSSEEEEEEEEESS
T ss_pred             hCCCceEEEEEEeCCC
Confidence            9865 69999998644

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.89  E-value=1.1e-08  Score=87.73  Aligned_cols=86  Identities=12%  Similarity=0.224  Sum_probs=70.6

Q ss_pred             CCCccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         195 PEPQTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ..+.+..|.|.+...+.+|.+...   .|++|..|.++    ++|..+||++||+|++|||+++.+++++++..+++..+
T Consensus         3 ~~~~~r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   78 (102)
T 2d90_A            3 SGSSGRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPG----SPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG   78 (102)
T ss_dssp             SCSSSEEEEEECCSSSSSCEEEECSSSSSEEEECCCTT----STTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHST
T ss_pred             CCCCCEEEEEeeCCCCccEEEEeecCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            345678889998766666666543   58999999886    46667889999999999999999888999999999888


Q ss_pred             CeEEEEEEeCCCC
Q psy9827         272 EKLSLTIRREVPR  284 (627)
Q Consensus       272 ~~v~l~V~r~~~~  284 (627)
                      ..+.|+|.|.+..
T Consensus        79 ~~v~l~v~r~~~~   91 (102)
T 2d90_A           79 DQTTLLVLDKEAE   91 (102)
T ss_dssp             TEEEEEECSTTCC
T ss_pred             CEEEEEEEECCCc
Confidence            8999999886543

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.89  E-value=4.8e-09  Score=89.75  Aligned_cols=84  Identities=19%  Similarity=0.352  Sum_probs=68.6

Q ss_pred             CccEEEEEeecCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      +....|.|.+...+.||.+..+         .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+
T Consensus         6 ~~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   81 (101)
T 2jik_A            6 VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKEN----GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDL   81 (101)
T ss_dssp             EEEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             CccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4567888888776666666553         48999999887    3455566 99999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCCCC
Q psy9827         267 IDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~~~  284 (627)
                      ++..+..+.|+|.|+...
T Consensus        82 ~~~~g~~v~l~v~R~~~~   99 (101)
T 2jik_A           82 FRNAGYAVSLRVQHRLES   99 (101)
T ss_dssp             HHTCCSEEEEEEEEESCC
T ss_pred             HHhCCCeEEEEEEeCCCC
Confidence            998888999999987653

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.89  E-value=5.8e-09  Score=88.36  Aligned_cols=83  Identities=18%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             ccEEEEEeecCCCCCeeeeeC------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      .+..|.|.|...+.||.+...      .|++|..|.++    ++|..+||++||+|++|||+++.+++++++..+++..+
T Consensus         3 ~~r~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   78 (96)
T 2v90_A            3 KPRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPG----LPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQG   78 (96)
T ss_dssp             CCEEEEEECBTTBSCEEEEEEECTTSCEEEEEEEECTT----SHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CCEEEEEEeCCCcccEEEEeccCCCCCCCeEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456788888766555555442      17999999876    46667889999999999999999888999999999888


Q ss_pred             CeEEEEEEeCCCC
Q psy9827         272 EKLSLTIRREVPR  284 (627)
Q Consensus       272 ~~v~l~V~r~~~~  284 (627)
                      ..+.|+|.|++..
T Consensus        79 ~~v~l~v~r~~~~   91 (96)
T 2v90_A           79 SCVSLTVVDPEAD   91 (96)
T ss_dssp             TEEEEEEECCCTT
T ss_pred             CEEEEEEECCCCc
Confidence            8999999997653

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.88  E-value=5.8e-09  Score=88.16  Aligned_cols=83  Identities=27%  Similarity=0.368  Sum_probs=67.6

Q ss_pred             ccEEEEEeecCCCCCeeeee--C---CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL--G---NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~--~---~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ..+.|.|.|...+.+||+.+  +   .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++...++..+
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   78 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEG----GLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASG   78 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             EEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCC----ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34678888865555566655  3   48999999887    3555566 9999999999999999999999999999889


Q ss_pred             CeEEEEEEeCCCC
Q psy9827         272 EKLSLTIRREVPR  284 (627)
Q Consensus       272 ~~v~l~V~r~~~~  284 (627)
                      ..+.|.|.|++..
T Consensus        79 ~~v~l~v~R~~~~   91 (95)
T 2vwr_A           79 ERVNLTIARPGKP   91 (95)
T ss_dssp             SEEEEEEEEESCS
T ss_pred             CEEEEEEEcCCcC
Confidence            9999999997653

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.88  E-value=7.4e-09  Score=89.27  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=70.0

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC----------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG----------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~----------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      .+..+.|.|.+...+.+|.+..+          .+++|..|.++    ++|..++ |++||+|++|||+++.++++.++.
T Consensus         5 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~   80 (105)
T 1wha_A            5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEG----GAAHRAGTLQVGDRVLSINGVDVTEARHDHAV   80 (105)
T ss_dssp             CCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTT----SSHHHHSSCCTTCEEEEESSCBCTTCCHHHHH
T ss_pred             CCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            44567888888776666666652          48999999887    3555566 999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEeCCCC
Q psy9827         265 KLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~~~~  284 (627)
                      .+++..+..+.|+|.|+...
T Consensus        81 ~~l~~~g~~v~l~v~R~~~~  100 (105)
T 1wha_A           81 SLLTAASPTIALLLEREAGS  100 (105)
T ss_dssp             HHHTSCCSCEEEEEEECCCC
T ss_pred             HHHHcCCCeEEEEEEECCCC
Confidence            99998888999999997643

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.88  E-value=4.5e-09  Score=90.35  Aligned_cols=86  Identities=24%  Similarity=0.360  Sum_probs=67.7

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ....+.|.|.+...+.+|.+..+    .+++|..|.++    ++|..++ |++||+|++|||+++.+++++++..+|+..
T Consensus         7 ~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~----spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   82 (103)
T 1uep_A            7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAM----GSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA   82 (103)
T ss_dssp             SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTT----STTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCC----ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34556777887655555555442    47999999887    3445556 999999999999999999999999999986


Q ss_pred             --CCeEEEEEEeCCCCC
Q psy9827         271 --KEKLSLTIRREVPRP  285 (627)
Q Consensus       271 --~~~v~l~V~r~~~~~  285 (627)
                        +..++|+|.|+....
T Consensus        83 ~~g~~v~l~v~R~~~~~   99 (103)
T 1uep_A           83 ARNGQVNLTVRRKVLSG   99 (103)
T ss_dssp             HHHTEEEEEEEEECCCC
T ss_pred             CCCCcEEEEEEeCCCCC
Confidence              689999999976543

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.88  E-value=1.2e-08  Score=85.41  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .+..|+|.|...+.||.+..+   .+++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..++.+
T Consensus         3 ~~r~v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~   78 (91)
T 1g9o_A            3 LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPG----SPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAV   78 (91)
T ss_dssp             CCEEEEEECBTTBCCEEEEECTTCSSEEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE
T ss_pred             ccEEEEEEeCCCcccEEEEecCCCCCEEEEEECCC----CHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence            356788888876555555554   38999999886    45666789999999999999999999999999999988877


Q ss_pred             EEEEEeCC
Q psy9827         275 SLTIRREV  282 (627)
Q Consensus       275 ~l~V~r~~  282 (627)
                      .+.+.+..
T Consensus        79 ~~~~~~r~   86 (91)
T 1g9o_A           79 RLLVVDPE   86 (91)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            77776643

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.88  E-value=7.8e-09  Score=99.12  Aligned_cols=73  Identities=34%  Similarity=0.522  Sum_probs=66.1

Q ss_pred             CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827          60 GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus        60 g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      .+|||++.++.       ..|++|..|.+||||+++| |++||+|++|||.++.++++.+++..++..++.+.|+|.|+.
T Consensus       111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  190 (196)
T 3gsl_A          111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPS  190 (196)
T ss_dssp             TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEEES
T ss_pred             CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeCCC
Confidence            48999998753       2479999999999999999 999999999999999999999999999988999999999865


Q ss_pred             c
Q psy9827         132 D  132 (627)
Q Consensus       132 ~  132 (627)
                      .
T Consensus       191 ~  191 (196)
T 3gsl_A          191 N  191 (196)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.87  E-value=2e-09  Score=105.13  Aligned_cols=85  Identities=29%  Similarity=0.479  Sum_probs=72.7

Q ss_pred             CCCCceEEEeccC-CceeEEEEccCC-CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee-
Q psy9827          47 VEPDPRFITFQKE-GSVGIRLTGGNK-VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI-  123 (627)
Q Consensus        47 ~~~~~r~v~l~k~-g~lG~~i~g~~~-~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V-  123 (627)
                      ....++.|.+.+. ++|||.+.++.+ .|++|..|.+||||+++||++||+|++|||..+.++++.++...+...+..| 
T Consensus         6 ~~~~~r~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~   85 (216)
T 2krg_A            6 TMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETK   85 (216)
T ss_dssp             TTCCCEEEEEECCSSSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEE
T ss_pred             cccceEEEEEEeCCCCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEE
Confidence            3457888999886 589999988743 4899999999999999999999999999999999888888888777668888 


Q ss_pred             EEEEEeCC
Q psy9827         124 HLIVQNRR  131 (627)
Q Consensus       124 ~L~v~r~~  131 (627)
                      .|+|.|.+
T Consensus        86 ~l~V~R~g   93 (216)
T 2krg_A           86 LLVVDRET   93 (216)
T ss_dssp             EEECCHHH
T ss_pred             EEEEEECC
Confidence            88887644

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.87  E-value=1e-08  Score=87.06  Aligned_cols=85  Identities=20%  Similarity=0.275  Sum_probs=67.3

Q ss_pred             CccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      +..+.|.|.+...+.||.+..+    .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+++..+
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   79 (97)
T 1n7e_A            4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKG----GLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG   79 (97)
T ss_dssp             CCEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTT----SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             ceEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3456777766544455555543    48999999887    3555667 9999999999999999999999999999878


Q ss_pred             CeEEEEEEeCCCCC
Q psy9827         272 EKLSLTIRREVPRP  285 (627)
Q Consensus       272 ~~v~l~V~r~~~~~  285 (627)
                      ..+.|+|.|++...
T Consensus        80 ~~v~l~v~R~~~~~   93 (97)
T 1n7e_A           80 ETVTLKIKKQTDAQ   93 (97)
T ss_dssp             SEEEEEEECCCCCC
T ss_pred             CeEEEEEEeCCCCC
Confidence            89999999977643

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.87  E-value=7.9e-09  Score=86.98  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=63.8

Q ss_pred             cEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         199 TLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      ...|.|.|...+.||.+..+   .+++|..|.+++    +|..+| |++||+|++|||+++.+++++++..+|+..++.+
T Consensus         5 ~r~v~l~k~~~~lG~~i~~~~~~~~~~V~~v~~gs----pA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v   80 (93)
T 3o46_A            5 VKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGG----AADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAI   80 (93)
T ss_dssp             CEEEEEEESSSCCCEEEEECTTTCCEEEEEECTTS----HHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEE
T ss_pred             EEEEEEEeCCCCccEEEEecCCCCCEEEEEECCCC----HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            35677888755445555444   589999999873    444445 9999999999999999999999999999988899


Q ss_pred             EEEEEeCCC
Q psy9827         275 SLTIRREVP  283 (627)
Q Consensus       275 ~l~V~r~~~  283 (627)
                      +|+|.|...
T Consensus        81 ~l~v~~~~~   89 (93)
T 3o46_A           81 TFKIIPGSK   89 (93)
T ss_dssp             EEEEECC--
T ss_pred             EEEEEeCCC
Confidence            999998544

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.87  E-value=7.7e-09  Score=89.16  Aligned_cols=83  Identities=22%  Similarity=0.351  Sum_probs=68.0

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ..+.|.|.|...+.||.+..+         .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++...+
T Consensus         3 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   78 (105)
T 2awx_A            3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEG----GAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTAL   78 (105)
T ss_dssp             CEEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             eEEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            456788888876666666543         38999999887    3455566 999999999999999999999999999


Q ss_pred             HcCCCeEEEEEEeCCCC
Q psy9827         268 DSSKEKLSLTIRREVPR  284 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~~~  284 (627)
                      +..+..+.|.|.|+...
T Consensus        79 ~~~~~~v~l~v~R~~~~   95 (105)
T 2awx_A           79 KNTSDFVYLKVAKPTSM   95 (105)
T ss_dssp             HSCCSEEEEEEECCCC-
T ss_pred             HcCCCeEEEEEEcCCCC
Confidence            98888999999997654

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.86  E-value=3e-08  Score=84.08  Aligned_cols=84  Identities=21%  Similarity=0.305  Sum_probs=68.3

Q ss_pred             CCCccEEEEEeecCCCCCeeeeeC-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--C
Q psy9827         195 PEPQTLRVQLSKSRKKDDFGIILG-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--K  271 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~~~~~gi~~~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~  271 (627)
                      ..+..+.+.+.+...+.+|.+... .|++|..|.++      +..++|++||+|++|||+++.++++++++.+|+..  +
T Consensus         7 ~~~~~~~v~l~~~~~g~G~~i~~~~~Gv~V~~v~~~------a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g   80 (96)
T 1ujv_A            7 GQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDI------QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIG   80 (96)
T ss_dssp             CCCCCEEEEEECCSSSSSEEEEEETTEEEEEEESCG------GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTT
T ss_pred             CCceEEEEEEEeCCCceeEEEEcCCCCEEEEEEecc------cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCC
Confidence            445678889998766555555443 48999999752      35789999999999999999999999999999984  5


Q ss_pred             CeEEEEEEeCCCC
Q psy9827         272 EKLSLTIRREVPR  284 (627)
Q Consensus       272 ~~v~l~V~r~~~~  284 (627)
                      ..+.|+|.|++..
T Consensus        81 ~~v~l~v~R~g~~   93 (96)
T 1ujv_A           81 SETSLIIHRGSGP   93 (96)
T ss_dssp             SEEEEEEECCSSC
T ss_pred             CEEEEEEEECCCC
Confidence            7999999997654

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=5.7e-09  Score=88.50  Aligned_cols=84  Identities=25%  Similarity=0.313  Sum_probs=68.7

Q ss_pred             CCCccEEEEEeecCC--CCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         195 PEPQTLRVQLSKSRK--KDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~--~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ..+..++|.|.+...  +.+|.+....+++|..|.+++    +|. ++|++||+|++|||+++.++++.++..+++..+.
T Consensus         5 ~~~~~~~v~l~~~~~~~~~G~~l~~~~~~~V~~V~~~s----pA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~   79 (96)
T 2edv_A            5 SSGVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGG----SAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAED   79 (96)
T ss_dssp             SSCEEEEEEECCCSSSCSCSBCCCSSSSCBCCCBCSSS----SST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSS
T ss_pred             CCCccEEEEEEECCCCCcccEEEecCCCeEEEEECCCC----chh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            345667888888763  345555545699999999874    333 8999999999999999999999999999999889


Q ss_pred             eEEEEEEeCCC
Q psy9827         273 KLSLTIRREVP  283 (627)
Q Consensus       273 ~v~l~V~r~~~  283 (627)
                      .+.|+|.|+..
T Consensus        80 ~v~l~v~R~~~   90 (96)
T 2edv_A           80 SLSITVVRCTS   90 (96)
T ss_dssp             CEEEEEEECCC
T ss_pred             eEEEEEEECCC
Confidence            99999999763

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.86  E-value=8.3e-09  Score=90.99  Aligned_cols=63  Identities=21%  Similarity=0.355  Sum_probs=56.4

Q ss_pred             CCCEEEEEeCC--CChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827          71 KVGIFVTAVQP--GSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE  133 (627)
Q Consensus        71 ~~gi~V~~V~~--gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~  133 (627)
                      ..|++|..|.+  +|||+++||++||+|++|||.++.++++.++...+...+..+.|+|.|++..
T Consensus        43 ~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~  107 (118)
T 2yub_A           43 ATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVP  107 (118)
T ss_dssp             CCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSC
T ss_pred             CCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEE
Confidence            36899999999  9999999999999999999999999988888888876588999999987654

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.86  E-value=1.3e-08  Score=86.39  Aligned_cols=83  Identities=22%  Similarity=0.332  Sum_probs=68.2

Q ss_pred             ccEEEEEeecCCCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ..+.|.|.+...+.||.+..+     .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++..+
T Consensus         4 ~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   79 (98)
T 2opg_A            4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEE----GAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP   79 (98)
T ss_dssp             EEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCC----ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            356788888766666666654     38999999887    3555566 9999999999999999999999999999888


Q ss_pred             CeEEEEEEeCCCC
Q psy9827         272 EKLSLTIRREVPR  284 (627)
Q Consensus       272 ~~v~l~V~r~~~~  284 (627)
                      ..+.|+|.|++..
T Consensus        80 ~~v~l~v~R~~~~   92 (98)
T 2opg_A           80 QRVRLTLYRDEAP   92 (98)
T ss_dssp             SEEEEEEEECSSC
T ss_pred             CeEEEEEEcCCCC
Confidence            9999999997654

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.85  E-value=1.6e-08  Score=85.63  Aligned_cols=82  Identities=20%  Similarity=0.358  Sum_probs=67.1

Q ss_pred             ccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      ..++|.|.+...+.+|.+..+       .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++.
T Consensus         5 ~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   80 (96)
T 1d5g_A            5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQ----GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN   80 (96)
T ss_dssp             CEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTT----SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             CEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            456788888765555655543       38999999887    3555667 99999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCC
Q psy9827         270 SKEKLSLTIRREVP  283 (627)
Q Consensus       270 ~~~~v~l~V~r~~~  283 (627)
                      .+..+.|.|.|+..
T Consensus        81 ~g~~v~l~v~R~~~   94 (96)
T 1d5g_A           81 TGQVVHLLLEKGQS   94 (96)
T ss_dssp             CCSEEEEEEECCSC
T ss_pred             CCCeEEEEEEcCCC
Confidence            88899999998654

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.85  E-value=8e-09  Score=87.61  Aligned_cols=82  Identities=22%  Similarity=0.297  Sum_probs=67.0

Q ss_pred             cEEEEEeecCCCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         199 TLRVQLSKSRKKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      .+.|.|.+...+.||.+..+        .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+.
T Consensus         4 ~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~----spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~   79 (97)
T 2jil_A            4 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPG----GPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ   79 (97)
T ss_dssp             EEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            46677877655566666554        37999999887    4555667 99999999999999998889999999999


Q ss_pred             CCCeEEEEEEeCCCC
Q psy9827         270 SKEKLSLTIRREVPR  284 (627)
Q Consensus       270 ~~~~v~l~V~r~~~~  284 (627)
                      .+..+.|.|.|+...
T Consensus        80 ~g~~v~l~v~R~~~~   94 (97)
T 2jil_A           80 CGQEAALLIEYDVSE   94 (97)
T ss_dssp             SCSEEEEEEEEECCC
T ss_pred             CCCeEEEEEEeCCCc
Confidence            888999999997653

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=98.85  E-value=3.2e-09  Score=89.01  Aligned_cols=82  Identities=18%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .+..|.|.|...+.||.+...   .+++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|+..+..+
T Consensus         3 ~pr~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   78 (91)
T 2vsp_A            3 KPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKG----GPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNV   78 (91)
T ss_dssp             CEEEEEEECBTTBTSCCCBCCTTCSCCBC-CCCTT----SHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEE
T ss_pred             CcEEEEEEeCCCcccEEEEeccCCCCeEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            457888888766555555432   48999999886    46667789999999999999999999999999999888899


Q ss_pred             EEEEEeCCC
Q psy9827         275 SLTIRREVP  283 (627)
Q Consensus       275 ~l~V~r~~~  283 (627)
                      .|+|.|++.
T Consensus        79 ~l~v~r~~~   87 (91)
T 2vsp_A           79 TLLVCGKKA   87 (91)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEeCCc
Confidence            999998654

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.85  E-value=8.6e-09  Score=89.41  Aligned_cols=83  Identities=23%  Similarity=0.263  Sum_probs=66.8

Q ss_pred             CccEEEEEeecCCCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ...+.|.|.|...+.||.+..+        .+++|..|.++    ++|..+| |++||+|++|||+++.++++++++.+|
T Consensus        14 ~~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~----spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   89 (108)
T 2d92_A           14 PEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVAD----GVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEIL   89 (108)
T ss_dssp             SSCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTT----CHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3557888998876666666552        37999999987    3444445 999999999999999999999999999


Q ss_pred             HcC-CCeEEEEEEeCCC
Q psy9827         268 DSS-KEKLSLTIRREVP  283 (627)
Q Consensus       268 ~~~-~~~v~l~V~r~~~  283 (627)
                      +.. ++.++|+|.|+..
T Consensus        90 ~~~~~~~v~l~v~R~~~  106 (108)
T 2d92_A           90 KAVPPGLVHLGICSGPS  106 (108)
T ss_dssp             HHSCSEEEEEEEECCCC
T ss_pred             HhCCCCeEEEEEEcCCC
Confidence            996 5689999998643

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.84  E-value=1.1e-08  Score=99.28  Aligned_cols=72  Identities=18%  Similarity=0.346  Sum_probs=65.4

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      .+|||++.+. ..|++|..|.+||+|+++| |++||+|++|||.++.++++.++...++..+..+.|+|.|...
T Consensus       125 ~~lG~~~~~~-~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~  197 (206)
T 3r0h_A          125 KELGLSLSPN-EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP  197 (206)
T ss_dssp             CCCCEEEEEC-SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEECC
T ss_pred             CccCeEEEcC-CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            3799999865 4689999999999999999 9999999999999999999999999999888999999998543

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.2e-08  Score=87.66  Aligned_cols=86  Identities=22%  Similarity=0.318  Sum_probs=70.0

Q ss_pred             CCccEEEEEeecCCCCCeeeee------CCcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~------~~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      ....+.|.|.+...+.+|.+..      ..+++|..|.++    ++|..++ |++||+|++|||+++.++++.++..+++
T Consensus         9 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   84 (104)
T 2djt_A            9 ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKD----GPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR   84 (104)
T ss_dssp             CCCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTT----CHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3456788888876666666655      358999999887    3555667 9999999999999999989999999999


Q ss_pred             cCCCeEEEEEEeCCCCC
Q psy9827         269 SSKEKLSLTIRREVPRP  285 (627)
Q Consensus       269 ~~~~~v~l~V~r~~~~~  285 (627)
                      ..+..+.|+|.|++..+
T Consensus        85 ~~g~~v~l~v~R~g~~~  101 (104)
T 2djt_A           85 AGGPQLHLVIRRPLSGP  101 (104)
T ss_dssp             HTCSEEEEEECCCCCCC
T ss_pred             cCCCeEEEEEEECCCCC
Confidence            88889999999876543

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.84  E-value=1.1e-08  Score=87.69  Aligned_cols=83  Identities=18%  Similarity=0.302  Sum_probs=67.8

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ....|.|.+...+.||.+..+         .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..++
T Consensus         4 ~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   79 (102)
T 2i1n_A            4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPG----GAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEAL   79 (102)
T ss_dssp             EEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             eEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            345678888766666666543         38999999887    3555566 999999999999999999999999999


Q ss_pred             HcCCCeEEEEEEeCCCC
Q psy9827         268 DSSKEKLSLTIRREVPR  284 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~~~  284 (627)
                      +..+..+.|.|.|++..
T Consensus        80 ~~~g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           80 KEAGPVVRLVVRRRQPP   96 (102)
T ss_dssp             HHSCSEEEEEEEEECCC
T ss_pred             HcCCCeEEEEEEeCCCC
Confidence            99889999999997654

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.84  E-value=1.2e-08  Score=85.88  Aligned_cols=81  Identities=23%  Similarity=0.346  Sum_probs=65.8

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ..+.|+|.|...+.||.+..+         .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++..++
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   78 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEG----GAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASL   78 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            346788888766666666543         37999999887    3455556 999999999999999998999999999


Q ss_pred             HcCCCeEEEEEEeCC
Q psy9827         268 DSSKEKLSLTIRREV  282 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~  282 (627)
                      +..++.+.|+|.|++
T Consensus        79 ~~~~~~v~l~v~R~g   93 (94)
T 2fe5_A           79 KNTSDMVYLKVAKPG   93 (94)
T ss_dssp             HTCCSEEEEEEECCC
T ss_pred             HcCCCeEEEEEEcCC
Confidence            988889999998864

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.84  E-value=1.5e-08  Score=84.20  Aligned_cols=79  Identities=23%  Similarity=0.328  Sum_probs=63.9

Q ss_pred             cEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         199 TLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .++|++ ++..+.+|.+..+    .+++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..+..+
T Consensus         4 ~~~v~l-~~~~~~G~~l~~g~~~~~~~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v   78 (88)
T 2uzc_A            4 NYSVSL-VGPAPWGFRLQGGKDFNMPLTISSLKDG----GKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSL   78 (88)
T ss_dssp             EEEEEE-ESSSCCCEEEEEEGGGTEEEEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             EEEEEE-cCCCcccEEEECcCCCCCCeEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            456777 5555555555543    37999999887    45666789999999999999999999999999999888899


Q ss_pred             EEEEEeCC
Q psy9827         275 SLTIRREV  282 (627)
Q Consensus       275 ~l~V~r~~  282 (627)
                      .|+|.|++
T Consensus        79 ~l~v~R~g   86 (88)
T 2uzc_A           79 NMTLQRES   86 (88)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            99999865

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.83  E-value=6.1e-09  Score=87.05  Aligned_cols=79  Identities=22%  Similarity=0.368  Sum_probs=64.7

Q ss_pred             cEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC--
Q psy9827         199 TLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--  271 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~--  271 (627)
                      ...|.|.+...+.+|.+..+    .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++..+  
T Consensus         3 ~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~----spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   78 (90)
T 2q9v_A            3 EQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPL----GAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQ   78 (90)
T ss_dssp             EEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEECCCccCEEEEccccCCCCEEEEEECCC----ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            46788888776666666654    47999999887    4555667 9999999999999999889999999999864  


Q ss_pred             CeEEEEEEeC
Q psy9827         272 EKLSLTIRRE  281 (627)
Q Consensus       272 ~~v~l~V~r~  281 (627)
                      +.+.|+|.|.
T Consensus        79 ~~v~l~v~R~   88 (90)
T 2q9v_A           79 GHVNLTVRQT   88 (90)
T ss_dssp             TEEEEEEEEC
T ss_pred             CeEEEEEEec
Confidence            3899999885

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=1.6e-08  Score=88.00  Aligned_cols=85  Identities=18%  Similarity=0.313  Sum_probs=69.2

Q ss_pred             CCCccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         195 PEPQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      +....+.|.|.+...+.+|.+..+       .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+
T Consensus         5 ~~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   80 (110)
T 1um1_A            5 SSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPG----SPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDL   80 (110)
T ss_dssp             SCCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTT----SHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHH
T ss_pred             CCCcEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            344667888888766556655553       47999999887    4555566 99999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCCC
Q psy9827         267 IDSSKEKLSLTIRREVP  283 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~~  283 (627)
                      ++..+..+.|.|.|++.
T Consensus        81 ~~~~~~~v~l~v~R~~~   97 (110)
T 1um1_A           81 IRHGGKKMRFLVAKSDV   97 (110)
T ss_dssp             HHTCCSEEEEEEECCCH
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            99988999999999653

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.1e-08  Score=85.87  Aligned_cols=82  Identities=24%  Similarity=0.402  Sum_probs=65.7

Q ss_pred             ccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCC-CCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTH-QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~-~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      .+..|.|.|...+.+|.+..+    .+++|..|.++    ++|..+ +|++||+|++|||+++.++++.++..+++..++
T Consensus         5 ~~r~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~----spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   80 (93)
T 2dkr_A            5 SSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPG----GVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQG   80 (93)
T ss_dssp             CSCEEEEECCTTCCCEEEECSSSSSCCCEEEEECTT----SHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCS
T ss_pred             CCEEEEEEeCCCCccEEEecccCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            456788888765555555542    58999999887    344444 699999999999999999999999999998888


Q ss_pred             eEEEEEEeCCC
Q psy9827         273 KLSLTIRREVP  283 (627)
Q Consensus       273 ~v~l~V~r~~~  283 (627)
                      .+.|.|.|+..
T Consensus        81 ~v~l~v~r~~~   91 (93)
T 2dkr_A           81 SVKLVVRSGPS   91 (93)
T ss_dssp             EEEEEECCCCS
T ss_pred             cEEEEEEeCCC
Confidence            99999988653

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.82  E-value=1.6e-08  Score=87.28  Aligned_cols=85  Identities=25%  Similarity=0.413  Sum_probs=68.0

Q ss_pred             CCCccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         195 PEPQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      ..+..+.|.| +...+.+|.+..+       .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+
T Consensus         8 ~~~~~~~v~l-~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~   82 (106)
T 3axa_A            8 KEPEIITVTL-KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKG----GAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL   82 (106)
T ss_dssp             --CCEEEEEE-ECSSSCSEEEEEEECSSCSSEEEEEEEEBTT----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCceEEEEEE-CCCCccCEEEEeecCCCCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3456677888 6666666666542       37999999987    3455566 99999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCCCC
Q psy9827         267 IDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~~~  284 (627)
                      ++..+..+.|+|.|++..
T Consensus        83 ~~~~g~~v~l~v~R~~~~  100 (106)
T 3axa_A           83 MTRTSSVVTLEVAKQGAI  100 (106)
T ss_dssp             HHTCCSEEEEEEECCCSS
T ss_pred             HHcCCCeEEEEEEeCCcc
Confidence            999889999999997654

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.82  E-value=1e-08  Score=86.61  Aligned_cols=83  Identities=13%  Similarity=0.224  Sum_probs=67.4

Q ss_pred             CccEEEEEeecCCCCCeeeeeCC---cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCe
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILGN---KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK  273 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~~---gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~  273 (627)
                      ..+..|.|.+...+.||.+..+.   +++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|+..++.
T Consensus         4 ~~~r~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   79 (95)
T 3r68_A            4 HQPRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPG----SPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ   79 (95)
T ss_dssp             CCCEEEEEECBTTBCSCEEEEC--CCSEEEECCCTT----SHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CCcEEEEEecCCCcccEEEEecCCCCCEEEEEECCC----CHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            35567888887666666665542   8999999887    4566677999999999999999999999999999998899


Q ss_pred             EEEEEEeCCC
Q psy9827         274 LSLTIRREVP  283 (627)
Q Consensus       274 v~l~V~r~~~  283 (627)
                      +.+.+.|...
T Consensus        80 ~~~~~~r~~~   89 (95)
T 3r68_A           80 TTLLVLDKEL   89 (95)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEEECCcc
Confidence            9998888654

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.82  E-value=9.1e-09  Score=89.04  Aligned_cols=85  Identities=24%  Similarity=0.332  Sum_probs=69.3

Q ss_pred             CccEEEEEeecCCCCCeeeee---C-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHH
Q psy9827         197 PQTLRVQLSKSRKKDDFGIIL---G-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARK  265 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~---~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~  265 (627)
                      ...+.|.|.+...+.+|.+..   +       .|++|..|.++    ++|..++ |++||+|++|||+++.++++.++..
T Consensus         8 ~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   83 (107)
T 1wf8_A            8 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEG----GAAQRDGRIQVNDQIVEVDGISLVGVTQNFAAT   83 (107)
T ss_dssp             EEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTT----CHHHHHCSSCTTCBEEEETTEECBSCCHHHHHH
T ss_pred             ceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            345678888876666666665   1       37999999887    3455566 9999999999999999999999999


Q ss_pred             HHHcCCCeEEEEEEeCCCCC
Q psy9827         266 LIDSSKEKLSLTIRREVPRP  285 (627)
Q Consensus       266 ~l~~~~~~v~l~V~r~~~~~  285 (627)
                      +++..+..+.|+|.|+....
T Consensus        84 ~~~~~~~~v~l~v~R~~~~~  103 (107)
T 1wf8_A           84 VLRNTKGNVRFVIGREKPSG  103 (107)
T ss_dssp             HHHHCCSEEEEEEEEECCCS
T ss_pred             HHhcCCCeEEEEEEeCCCCC
Confidence            99999999999999976543

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.82  E-value=1.6e-08  Score=84.59  Aligned_cols=80  Identities=29%  Similarity=0.362  Sum_probs=64.6

Q ss_pred             ccEEEEEeecCCCCCeeee--eC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         198 QTLRVQLSKSRKKDDFGII--LG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~--~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ....|.|.+.....+||+.  .+   .|++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..+.
T Consensus         6 ~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~----spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   81 (91)
T 1m5z_A            6 ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPA----GPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGN   81 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT
T ss_pred             ceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            5567888886543344544  43   48999999887    455567899999999999999999989999999998888


Q ss_pred             eEEEEEEeC
Q psy9827         273 KLSLTIRRE  281 (627)
Q Consensus       273 ~v~l~V~r~  281 (627)
                      .+.|.|.|+
T Consensus        82 ~v~l~v~R~   90 (91)
T 1m5z_A           82 KLDLVISRN   90 (91)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            999999885

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.82  E-value=1.5e-08  Score=84.67  Aligned_cols=79  Identities=19%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             ccEEEEEeec-CCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCC-CCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKS-RKKDDFGIILG----NKIFVKEVTHRLDNNASPGTH-QLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~-~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~-~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      .+.+|.|.+. ..+.+|.+..+    .+++|..|.++    ++|..+ +|++||+|++|||+++.++++.++..+++..+
T Consensus         4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~----spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   79 (90)
T 1qav_A            4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKG----LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTT----SHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCC----CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4567888874 34455555443    47999999887    344444 99999999999999999999999999999988


Q ss_pred             CeEEEEEEe
Q psy9827         272 EKLSLTIRR  280 (627)
Q Consensus       272 ~~v~l~V~r  280 (627)
                      ..+.|.|.|
T Consensus        80 ~~v~l~v~r   88 (90)
T 1qav_A           80 KEVVLEVKY   88 (90)
T ss_dssp             SEEEEEEEE
T ss_pred             CeEEEEEEE
Confidence            899999987

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.81  E-value=1.8e-08  Score=83.67  Aligned_cols=71  Identities=30%  Similarity=0.409  Sum_probs=59.0

Q ss_pred             CCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy9827         208 RKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  282 (627)
Q Consensus       208 ~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~  282 (627)
                      ..+.||.+..+    .+++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|+.....+.|.|.|++
T Consensus        11 ~~~lG~~l~~~~~~~~g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   85 (87)
T 2pa1_A           11 PAPWGFRITGGRDFHTPIMVTKVAER----GKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT   85 (87)
T ss_dssp             SSCCSEEEEEEGGGTEEEEEEEECSS----SHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred             CCccCEEEecccCCCCCEEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence            33445555544    28999999887    4566789999999999999999988899999999988899999999975

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.81  E-value=3.9e-08  Score=84.12  Aligned_cols=80  Identities=21%  Similarity=0.359  Sum_probs=62.6

Q ss_pred             ccEEEEEeecCCCCCeeeee--CC------cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL--GN------KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~--~~------gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      ....|.+.+... .+||+.+  ..      +++|..|.++   ++|++.++|++||+|++|||+++.+++++++..+|+.
T Consensus         9 ~~~~v~l~k~~g-~~lG~~i~~~~~~~~~~~~~V~~V~~~---spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~   84 (101)
T 2yt7_A            9 NCREVHLEKRRG-EGLGVALVESGWGSLLPTAVIANLLHG---GPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRE   84 (101)
T ss_dssp             CCEEEEEECCTT-CCCCEEEEECCCSSSSCCEEEEEECTT---STTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEEeCCC-CccCEEEEeCCCCCCccCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            445677776542 3555555  22      6999999987   3444458899999999999999988899999999998


Q ss_pred             --CCCeEEEEEEeC
Q psy9827         270 --SKEKLSLTIRRE  281 (627)
Q Consensus       270 --~~~~v~l~V~r~  281 (627)
                        .+..++|+|.|.
T Consensus        85 ~~~g~~v~l~v~R~   98 (101)
T 2yt7_A           85 TKSQTSVTLSIVHC   98 (101)
T ss_dssp             TTTSSEEEEEECCC
T ss_pred             CCCCCeEEEEEEeC
Confidence              567999999874

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.81  E-value=2e-08  Score=85.07  Aligned_cols=80  Identities=23%  Similarity=0.269  Sum_probs=64.9

Q ss_pred             ccEEEEEeecC-CCCCeeeee-------C----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIIL-------G----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARK  265 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~-------~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~  265 (627)
                      .+..|.|.|.. .+.+|.+..       +    .+++|..|.++    ++|..+||++||+|++|||+++.+++++++..
T Consensus         4 ~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~   79 (96)
T 2ego_A            4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHES----SPAQLAGLTPGDTIASVNGLNVEGIRHREIVD   79 (96)
T ss_dssp             CEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTT----CHHHHTTCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             ccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            45678888875 355555554       1    27899999886    45667789999999999999999888999999


Q ss_pred             HHHcCCCeEEEEEEeC
Q psy9827         266 LIDSSKEKLSLTIRRE  281 (627)
Q Consensus       266 ~l~~~~~~v~l~V~r~  281 (627)
                      +|+..++.+.|+|.++
T Consensus        80 ~l~~~~~~v~l~v~~~   95 (96)
T 2ego_A           80 IIKASGNVLRLETLYG   95 (96)
T ss_dssp             HHHHTTTEEEEEEECC
T ss_pred             HHHhCCCeEEEEEEEC
Confidence            9999888999999874

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.81  E-value=1.7e-08  Score=86.75  Aligned_cols=83  Identities=16%  Similarity=0.267  Sum_probs=69.1

Q ss_pred             CCccEEEEEeecCCCCCeeeeeCC---cEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILGN---KIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~~---gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      .+....|.|.+...+.||.+..+.   |++|..|.++    ++|..+| |++||+|++|||+++.++++.++...++..+
T Consensus         9 ~~~~~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   84 (104)
T 3i4w_A            9 PREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAG----GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   84 (104)
T ss_dssp             CSSCEEEEEECBTTBTSEEEEECC-CCCEEEEEECTT----SHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCccEEEEEEeCCCccCEEEECCCCCCCEEEEEECCC----ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            345678889988666666666543   8999999887    4555667 9999999999999999999999999999988


Q ss_pred             CeEEEEEEeCC
Q psy9827         272 EKLSLTIRREV  282 (627)
Q Consensus       272 ~~v~l~V~r~~  282 (627)
                      ..+.|+|.|+.
T Consensus        85 ~~v~l~v~r~~   95 (104)
T 3i4w_A           85 QTVTIIAQYKP   95 (104)
T ss_dssp             SEEEEEEEECH
T ss_pred             CeEEEEEEECc
Confidence            99999999863

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.81  E-value=1.1e-08  Score=84.39  Aligned_cols=78  Identities=27%  Similarity=0.364  Sum_probs=61.3

Q ss_pred             EEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         200 LRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      +.|+|. +..+.+|.+..+    .+++|..|.++    ++|..++|++||+|++|||.++.++++.++..+++..++.+.
T Consensus         3 ~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~~----spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   77 (85)
T 1rgw_A            3 YSVTLT-GPGPWGFRLQGGKDFNMPLTISRITPG----SKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLS   77 (85)
T ss_dssp             EEEEEC-CSSCCCEEECCCGGGTSCCBEEEECTT----SHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEE
T ss_pred             EEEEEe-CCCccCEEEEeccCCCCCeEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEE
Confidence            456663 333444444433    37999999887    455568999999999999999999999999999988888899


Q ss_pred             EEEEeCC
Q psy9827         276 LTIRREV  282 (627)
Q Consensus       276 l~V~r~~  282 (627)
                      |.|.|++
T Consensus        78 l~v~R~~   84 (85)
T 1rgw_A           78 LTLQKSK   84 (85)
T ss_dssp             EEEESCC
T ss_pred             EEEEeCC
Confidence            9998864

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.81  E-value=2.6e-08  Score=87.24  Aligned_cols=85  Identities=19%  Similarity=0.286  Sum_probs=66.7

Q ss_pred             CCccEEEEEeecCCCCCeeeee--C-------C----cEEEEEeccCCCCCCCCCC-CCCCCCCEEEEeCceeCCCCCHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIIL--G-------N----KIFVKEVTHRLDNNASPGT-HQLAEGDVLLKINNHPTDGMSVK  261 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~--~-------~----gi~V~~V~~g~~~~~~a~~-~~L~~GD~Il~VNg~~v~~~s~~  261 (627)
                      .+.+..|.|.+.. ..+|||.+  +       .    +++|..|.++    ++|.. ++|++||+|++|||+++.+++++
T Consensus         8 ~~~~~~v~l~~~~-~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~----spA~~~agL~~GD~I~~ing~~v~~~~~~   82 (114)
T 1uew_A            8 SLQTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDG----SPADRCAKLKVGDRILAVNGQSIINMPHA   82 (114)
T ss_dssp             CCCCEEEEEECCT-TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTT----CTTGGGSSCCTTCBEEEETTBCTTTSCHH
T ss_pred             cccceEEEEEECC-CCCCCEEEEeecccCCCCcccccCeEEEEECCC----ChHHHhCCCCCCCEEEEECCEECCCCCHH
Confidence            4566788888753 23455544  2       1    5699999887    34445 89999999999999999988899


Q ss_pred             HHHHHHHcCCCeEEEEEEeCCCCC
Q psy9827         262 EARKLIDSSKEKLSLTIRREVPRP  285 (627)
Q Consensus       262 e~~~~l~~~~~~v~l~V~r~~~~~  285 (627)
                      ++..+|+..+..+.|+|.|+....
T Consensus        83 ~~~~~l~~~g~~v~l~v~r~~~~~  106 (114)
T 1uew_A           83 DIVKLIKDAGLSVTLRIIPQEELN  106 (114)
T ss_dssp             HHHHHHHHTTTEEEEEECCCSCCC
T ss_pred             HHHHHHHcCCCeEEEEEEeCCcCC
Confidence            999999998889999999976543

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.81  E-value=1.3e-08  Score=89.59  Aligned_cols=83  Identities=16%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             ccEEEEEeecC-------CCCCeeeeeCC---------cEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCH
Q psy9827         198 QTLRVQLSKSR-------KKDDFGIILGN---------KIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSV  260 (627)
Q Consensus       198 ~~~~V~L~k~~-------~~~~~gi~~~~---------gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~  260 (627)
                      ....|.|.+..       .+.+|.+..+.         |++|..|.++    ++|..++ |++||+|++|||+++.++++
T Consensus        12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~----s~A~~aG~L~~GD~Il~vng~~v~~~~~   87 (117)
T 1ujd_A           12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPG----GSAEQTGKLMEGMQVLEWNGIPLTSKTY   87 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTT----CHHHHHSSCCTTCEEEEETTEECTTCCH
T ss_pred             ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEEcCCCCH
Confidence            34567777765       33444444332         7999999887    3444555 99999999999999999999


Q ss_pred             HHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         261 KEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       261 ~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ++++.+|+..+..+.|+|.|+...
T Consensus        88 ~~~~~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           88 EEVQSIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             HHHHHHHSCCSSCEEEEEESSCCC
T ss_pred             HHHHHHHhcCCCEEEEEEEECCcc
Confidence            999999999889999999997653

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.80  E-value=3.5e-08  Score=86.74  Aligned_cols=83  Identities=19%  Similarity=0.293  Sum_probs=66.2

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC-------------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG-------------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKE  262 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~-------------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e  262 (627)
                      .+..|.|.+.. .+.+|.+..+             .|++|..|.++    ++|..+| |++||+|++|||+++.++++.+
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~vng~~v~~~~~~~   90 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLED----SPAGKTNALKTGDKILEVSGVDLQNASHSE   90 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSS----STTTSSCSCCTTCEEEEESSCBCTTCCHHH
T ss_pred             CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            45678888763 3444544433             38999999887    3455566 9999999999999999999999


Q ss_pred             HHHHHHcCCCeEEEEEEeCCCC
Q psy9827         263 ARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       263 ~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ++.+++..+..+.|+|.|....
T Consensus        91 ~~~~~~~~g~~v~l~v~r~~~~  112 (117)
T 2ehr_A           91 AVEAIKNAGNPVVFIVQSLSST  112 (117)
T ss_dssp             HHHHHHTSCSSEEEEECCBSCC
T ss_pred             HHHHHHcCCCeEEEEEEECCCC
Confidence            9999999889999999886654

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.80  E-value=1.3e-08  Score=89.86  Aligned_cols=80  Identities=19%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      ....|.+.|.. .+.||.+..+       .|++|..|.++    ++|..+| |++||+|++|||+++.++++++++.+|+
T Consensus        24 ~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~g----spA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   99 (118)
T 3b76_A           24 HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPG----GVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK   99 (118)
T ss_dssp             EEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTT----SHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34567777653 4455555554       26999999887    3444555 9999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeC
Q psy9827         269 SSKEKLSLTIRRE  281 (627)
Q Consensus       269 ~~~~~v~l~V~r~  281 (627)
                      ..++.++|+|.|.
T Consensus       100 ~~~~~v~L~v~R~  112 (118)
T 3b76_A          100 RTSSSIVLKALEV  112 (118)
T ss_dssp             SCCSEEEEEEEEE
T ss_pred             cCCCeEEEEEEEC
Confidence            9999999999884

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.80  E-value=1.6e-08  Score=89.03  Aligned_cols=86  Identities=22%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             CCccEEEEEeecC-CCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSR-KKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       196 ~~~~~~V~L~k~~-~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      ....+.|.|.+.. .+.||.+..+     .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+
T Consensus        13 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~----spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~   88 (117)
T 1v62_A           13 ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPA----SVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA   88 (117)
T ss_dssp             SSSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTT----SHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH
T ss_pred             CCCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3457788888865 4455555543     24999999987    3444555 9999999999999999899999999999


Q ss_pred             cCCCeEEEEEEeCCCCC
Q psy9827         269 SSKEKLSLTIRREVPRP  285 (627)
Q Consensus       269 ~~~~~v~l~V~r~~~~~  285 (627)
                      ..+..+.|+|.|+....
T Consensus        89 ~~g~~v~l~v~r~~~~~  105 (117)
T 1v62_A           89 SISEKVRLEILPVPQSQ  105 (117)
T ss_dssp             SCSSEEEEEECCBTTBC
T ss_pred             hCCCeEEEEEEECCCCC
Confidence            88899999999976643

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.80  E-value=3.6e-08  Score=81.93  Aligned_cols=79  Identities=16%  Similarity=0.310  Sum_probs=62.6

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKE  272 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~  272 (627)
                      ..+.|.|.|+..+.||.+...   .+++|..| ++    ++|. ++|++||+|++|||+++.+++++++..+++.  .+.
T Consensus         3 ~~~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~~----spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~   76 (88)
T 3bpu_A            3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQI-VD----SPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGS   76 (88)
T ss_dssp             EEEEEEEECBTTBSSCEEEECTTSSSEEEEEC-CC------CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred             cEEEEEEEcCCCceeEEEEecCCCCcEEEEEe-cC----ChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCC
Confidence            456788888766555555543   47899887 65    3445 7999999999999999999889999999985  467


Q ss_pred             eEEEEEEeCC
Q psy9827         273 KLSLTIRREV  282 (627)
Q Consensus       273 ~v~l~V~r~~  282 (627)
                      .+.|+|.|++
T Consensus        77 ~v~l~v~R~g   86 (88)
T 3bpu_A           77 EVTLLVQRQT   86 (88)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEeCC
Confidence            9999999865

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.79  E-value=1.7e-08  Score=84.63  Aligned_cols=81  Identities=38%  Similarity=0.651  Sum_probs=65.8

Q ss_pred             cEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEE
Q psy9827         199 TLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT  277 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~  277 (627)
                      ++.|.+.+......||+....|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+|+..++.+.|.
T Consensus         3 ~~~v~~~~~~~~~~~g~~~~~gv~V~~v~~~----s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   78 (92)
T 3cyy_A            3 PTKVTLVKSAKNEEYGLRLASHIFVKEISQD----SLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMV   78 (92)
T ss_dssp             CEEEEEECSSTTSCCCEEEEEEEEEEEECTT----CHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             cEEEEEEeCCCCCCCCEEEeCCEEEEEECCC----ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            4566776665566788776689999999887    3555667 9999999999999999999999999999887899999


Q ss_pred             EEeCCC
Q psy9827         278 IRREVP  283 (627)
Q Consensus       278 V~r~~~  283 (627)
                      |.|++.
T Consensus        79 v~r~g~   84 (92)
T 3cyy_A           79 VQRDER   84 (92)
T ss_dssp             EEC---
T ss_pred             EEeCCc
Confidence            998664

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.79  E-value=1.3e-08  Score=89.57  Aligned_cols=81  Identities=25%  Similarity=0.387  Sum_probs=65.6

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ....|.|.|+..+.||.+..+         .+++|..|.++    ++|..+| |++||+|++|||+++.++++++++.++
T Consensus        24 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~g----spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   99 (117)
T 2byg_A           24 TVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDG----GAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAIL   99 (117)
T ss_dssp             EEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             ceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            346778887765555555543         37999999887    3444556 999999999999999999999999999


Q ss_pred             HcCCCeEEEEEEeCC
Q psy9827         268 DSSKEKLSLTIRREV  282 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~  282 (627)
                      +..+..++|+|.|++
T Consensus       100 ~~~g~~v~l~v~R~~  114 (117)
T 2byg_A          100 KNTSEVVYLKVGKPT  114 (117)
T ss_dssp             HTCCSEEEEEEEEEE
T ss_pred             HcCCCeEEEEEEeCC
Confidence            998899999999864

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.79  E-value=3.1e-08  Score=87.98  Aligned_cols=85  Identities=27%  Similarity=0.309  Sum_probs=68.1

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ....+.|.|.+...+.+|.+..+    .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+..
T Consensus        17 ~~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (123)
T 1ueq_A           17 KGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPD----GPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSV   92 (123)
T ss_dssp             CSEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTT----SHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTS
T ss_pred             CCcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34566788888766555555543    36999999887    3555666 999999999999999999999999999984


Q ss_pred             --CCeEEEEEEeCCCC
Q psy9827         271 --KEKLSLTIRREVPR  284 (627)
Q Consensus       271 --~~~v~l~V~r~~~~  284 (627)
                        +..+.|+|.|+...
T Consensus        93 ~~g~~v~l~v~R~~~~  108 (123)
T 1ueq_A           93 PIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             CTTCEEEEEEEESCCC
T ss_pred             CCCCeEEEEEEeCCCC
Confidence              57999999997643

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.79  E-value=1.4e-08  Score=87.31  Aligned_cols=81  Identities=19%  Similarity=0.229  Sum_probs=64.1

Q ss_pred             cEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCC-CCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         199 TLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGT-HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       199 ~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~-~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ...|.|.+.. .+.||.+..+    .+++|..|.++    ++|.. ++|++||+|++|||+++.++++++++.+++..++
T Consensus        10 ~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~----s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~   85 (103)
T 2dc2_A           10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPG----QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG   85 (103)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTT----SHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCS
T ss_pred             cEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCC----CHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            3567777643 3445555543    37999999987    34444 7999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCC
Q psy9827         273 KLSLTIRREVP  283 (627)
Q Consensus       273 ~v~l~V~r~~~  283 (627)
                      .++|+|.+...
T Consensus        86 ~v~l~v~~~~~   96 (103)
T 2dc2_A           86 EIEFEVVYVAL   96 (103)
T ss_dssp             EEEEEEEECC-
T ss_pred             cEEEEEEecCC
Confidence            99999998654

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.79  E-value=1.8e-08  Score=83.11  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=61.6

Q ss_pred             EEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CC
Q psy9827         200 LRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSS--KE  272 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~  272 (627)
                      ++|+|.|...+.+|.+..+    .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+++..  +.
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~   77 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLD----GPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGA   77 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTC
T ss_pred             EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            4677777766556655553    25999999887    3555567 999999999999999999999999999986  57


Q ss_pred             eEEEEEEe
Q psy9827         273 KLSLTIRR  280 (627)
Q Consensus       273 ~v~l~V~r  280 (627)
                      .+.|+|.|
T Consensus        78 ~v~l~v~R   85 (85)
T 2i04_A           78 SVDLELCR   85 (85)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence            88888865

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.79  E-value=3.3e-08  Score=88.95  Aligned_cols=85  Identities=14%  Similarity=0.146  Sum_probs=67.4

Q ss_pred             CCccEEEEEeecC-CCCCeeeeeCC----------------cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCC
Q psy9827         196 EPQTLRVQLSKSR-KKDDFGIILGN----------------KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGM  258 (627)
Q Consensus       196 ~~~~~~V~L~k~~-~~~~~gi~~~~----------------gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~  258 (627)
                      ......|+|.|.. .+.||.+..+.                |++|..|.++    ++|..+||++||+|++|||+++.++
T Consensus        25 ~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~g----spA~~aGL~~GD~Il~Vng~~v~~~  100 (132)
T 3l4f_D           25 IIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEG----GVAWRAGLRMGDFLIEVNGQNVVKV  100 (132)
T ss_dssp             CCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTT----SGGGGGTCCTTCEEEEESSSBCTTS
T ss_pred             CCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCC
Confidence            3456688888743 44555555542                5999999887    4556677999999999999999999


Q ss_pred             CHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         259 SVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       259 s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ++++++.+++..+..+.|+|.+....
T Consensus       101 ~~~~~~~~l~~~g~~v~l~v~~~~~~  126 (132)
T 3l4f_D          101 GHRQVVNMIRQGGNTLMVKVVMVTRH  126 (132)
T ss_dssp             CHHHHHHHHHHTTTEEEEEEECCCC-
T ss_pred             CHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            99999999999999999999986543

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.79  E-value=5.1e-08  Score=82.27  Aligned_cols=77  Identities=27%  Similarity=0.372  Sum_probs=62.1

Q ss_pred             EEEEEeecCCCCCeeeeeC------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         200 LRVQLSKSRKKDDFGIILG------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ++|.+.+.. ++||.+..+            .|++|..|.+++    +|.. +|++||+|++|||+++.++++.++...+
T Consensus         5 ~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~s----pA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~   78 (95)
T 1mfg_A            5 IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEG----PASK-LLQPGDKIIQANGYSFINIEHGQAVSLL   78 (95)
T ss_dssp             EEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTS----TTTT-TCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             EEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECCCC----chhh-CCCCCCEEEEECCEEcCCCCHHHHHHHh
Confidence            456666654 556666543            389999999873    4444 9999999999999999998999999999


Q ss_pred             HcCCCeEEEEEEeCC
Q psy9827         268 DSSKEKLSLTIRREV  282 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~  282 (627)
                      +..+..+.|+|.|+.
T Consensus        79 ~~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           79 KTFQNTVELIIVREV   93 (95)
T ss_dssp             HHCCSEEEEEEEEEC
T ss_pred             hcCCCeEEEEEEeCC
Confidence            988899999999864

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.78  E-value=1.6e-08  Score=83.89  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=61.4

Q ss_pred             cEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCC-CCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         199 TLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGT-HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       199 ~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~-~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      +..|.|.+.. .+.+|.+..+    .+++|..|.++    ++|.. ++|++||+|++|||+++.++++.++..+++..++
T Consensus         3 ~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~g----spA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   78 (87)
T 4e34_A            3 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPG----QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG   78 (87)
T ss_dssp             CEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTT----SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             EEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCC----CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3567777653 2444444443    36999999987    34444 7999999999999999999999999999999888


Q ss_pred             eEEEEEEe
Q psy9827         273 KLSLTIRR  280 (627)
Q Consensus       273 ~v~l~V~r  280 (627)
                      .+.|+|.+
T Consensus        79 ~v~l~v~~   86 (87)
T 4e34_A           79 EIEFEVVY   86 (87)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99998865

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.78  E-value=2.1e-08  Score=84.00  Aligned_cols=80  Identities=8%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             CccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEE
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL  276 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l  276 (627)
                      .....+.+.+.....+||+....| +|..|.++    ++|..+||++||+|++|||+++.++++.++..+|+..+..+.|
T Consensus        10 ~~~~~~~i~~~~~~~~lG~~~~~G-~V~~V~~~----spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l   84 (90)
T 1y7n_A           10 GNVTTVLIRRPDLRYQLGFSVQNG-IICSLMRG----GIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHM   84 (90)
T ss_dssp             SSCEEEEEEESSTTSCCCEEEETT-EEEEECTT----SHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEE
T ss_pred             CCcceEEEEeCCCccccCeEecCC-EEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            344556666655566777766556 89999887    4555678999999999999999888999999999988889999


Q ss_pred             EEEeC
Q psy9827         277 TIRRE  281 (627)
Q Consensus       277 ~V~r~  281 (627)
                      +|.+.
T Consensus        85 ~v~p~   89 (90)
T 1y7n_A           85 KTMPA   89 (90)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            99863

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.78  E-value=1.6e-08  Score=90.51  Aligned_cols=83  Identities=22%  Similarity=0.359  Sum_probs=66.4

Q ss_pred             CccEEEEEeecCCCCCeeeee--C-------------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCH
Q psy9827         197 PQTLRVQLSKSRKKDDFGIIL--G-------------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSV  260 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~--~-------------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~  260 (627)
                      .....|.|.|.....+|||.+  +             .|++|..|.++    ++|..+| |++||+|++|||+++.++++
T Consensus        28 ~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~vng~~v~~~~~  103 (128)
T 1nf3_C           28 ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPG----GLAQSTGLLAVNDEVLEVNGIEVSGKSL  103 (128)
T ss_dssp             TTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTT----CHHHHHTCCCTTCEEEEETTEESTTCCH
T ss_pred             CccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            345678888875444555554  2             37999999887    3444556 99999999999999999999


Q ss_pred             HHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         261 KEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       261 ~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      +++..+++..++.+.|+|.|++.
T Consensus       104 ~~~~~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C          104 DQVTDMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             HHHHHHHHHTTTSEEEEEECCCC
T ss_pred             HHHHHHHHcCCCeEEEEEEECCc
Confidence            99999999888899999999764

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.77  E-value=2.5e-08  Score=83.63  Aligned_cols=81  Identities=21%  Similarity=0.329  Sum_probs=64.8

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ..+.|+|.+.. .+.||.+..+   .|++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+++..++
T Consensus         4 ~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   79 (92)
T 2qg1_A            4 DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKG----GIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLG   79 (92)
T ss_dssp             CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTT----SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             eEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45678888753 3444444433   48999999887    3455566 99999999999999999999999999999889


Q ss_pred             eEEEEEEeCC
Q psy9827         273 KLSLTIRREV  282 (627)
Q Consensus       273 ~v~l~V~r~~  282 (627)
                      .+.|+|.|..
T Consensus        80 ~v~l~v~R~~   89 (92)
T 2qg1_A           80 TVTLEVGRIS   89 (92)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEccc
Confidence            9999999865

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.77  E-value=1.9e-08  Score=87.32  Aligned_cols=81  Identities=15%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             cEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCe-EEEE
Q psy9827         199 TLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK-LSLT  277 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~-v~l~  277 (627)
                      +..|.|.|+..+.||.+....+++|..|.++    ++|..+||++||+|++|||.++.+++++++..+++..++. +.|+
T Consensus        24 ~r~v~l~k~~~~~G~~l~~~~~v~V~~V~~g----spA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~   99 (109)
T 2vsv_A           24 PRSIRFTAEEGDLGFTLRGNAPVQVHFLDPY----CSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK   99 (109)
T ss_dssp             CEEEEECCGGGCCCEEEESSSSCEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred             CEEEEEEeCCCceeEEEeCCCCeEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence            4577788765555555555578999999886    4666789999999999999999999999999999987764 9999


Q ss_pred             EEeCCC
Q psy9827         278 IRREVP  283 (627)
Q Consensus       278 V~r~~~  283 (627)
                      |.|...
T Consensus       100 V~~~~~  105 (109)
T 2vsv_A          100 VVSLLD  105 (109)
T ss_dssp             EESCC-
T ss_pred             EEECCC
Confidence            988543

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.77  E-value=2.4e-08  Score=87.15  Aligned_cols=82  Identities=22%  Similarity=0.330  Sum_probs=67.5

Q ss_pred             CccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      .....|.|.+...+.||.+..+    .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++..+
T Consensus        23 ~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g   98 (112)
T 2r4h_A           23 MDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAED----GPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG   98 (112)
T ss_dssp             CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTT----SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3567788888766666666554    48999999887    3555667 9999999999999999999999999999888


Q ss_pred             CeEEEEEEeCC
Q psy9827         272 EKLSLTIRREV  282 (627)
Q Consensus       272 ~~v~l~V~r~~  282 (627)
                      ..+.|+|.|++
T Consensus        99 ~~v~l~v~R~~  109 (112)
T 2r4h_A           99 RRVRLFLKRGE  109 (112)
T ss_dssp             TEEEEEEECCE
T ss_pred             CeEEEEEEeCC
Confidence            89999998864

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.77  E-value=1.2e-08  Score=88.50  Aligned_cols=83  Identities=17%  Similarity=0.281  Sum_probs=64.7

Q ss_pred             ccEEEEEeec-CCCCCeeeeeC------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         198 QTLRVQLSKS-RKKDDFGIILG------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       198 ~~~~V~L~k~-~~~~~~gi~~~------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      ..++|.|.|. ..+.+|.+..+      .+++|.+|.++    ++|..+| |++||+|++|||+++.++++++++.+|+.
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   80 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKG----GAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRD   80 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTT----SHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCC----ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4567788763 34556655553      48999999987    3444455 99999999999999999999999999997


Q ss_pred             C---CCeEEEEEEeCCCC
Q psy9827         270 S---KEKLSLTIRREVPR  284 (627)
Q Consensus       270 ~---~~~v~l~V~r~~~~  284 (627)
                      .   .+.++|+|.|....
T Consensus        81 ~~~~~~~v~l~v~R~~~~   98 (108)
T 3cbz_A           81 IVHKPGPIVLTVAKSGGG   98 (108)
T ss_dssp             HHTSSSCEEEEEECCCC-
T ss_pred             cccCCCeEEEEEEeCCCC
Confidence            6   56899999997654

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=1.7e-08  Score=89.26  Aligned_cols=83  Identities=19%  Similarity=0.357  Sum_probs=68.3

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ....|.|.|...+.+|.+..+         .+++|..|.++    ++|..++ |++||+|++|||+++.++++.+++.++
T Consensus        17 ~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~   92 (120)
T 2eno_A           17 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKEN----GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLF   92 (120)
T ss_dssp             EEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSS----SHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHH
T ss_pred             ceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCC----ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            456788888776666666652         38999999887    3455566 999999999999999999999999999


Q ss_pred             HcCCCeEEEEEEeCCCC
Q psy9827         268 DSSKEKLSLTIRREVPR  284 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~~~  284 (627)
                      +..+..+.|+|.|+...
T Consensus        93 ~~~g~~v~l~v~R~~~~  109 (120)
T 2eno_A           93 RNAGYAVSLRVQHRLQV  109 (120)
T ss_dssp             HHHCSEEEEEEEEEEEC
T ss_pred             HcCCCeEEEEEEeCCcC
Confidence            98888999999997654

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.77  E-value=1.1e-08  Score=91.37  Aligned_cols=82  Identities=23%  Similarity=0.259  Sum_probs=63.1

Q ss_pred             cEEEEEe-ecCCCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         199 TLRVQLS-KSRKKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       199 ~~~V~L~-k~~~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      .+.|.|. +...+.||.+..+        .+++|..|.++    ++|..+| |++||+|++|||+++.++++.+++.+|+
T Consensus        26 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~g----spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  101 (127)
T 1wg6_A           26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHG----GAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR  101 (127)
T ss_dssp             EEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSS----SSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHH
T ss_pred             EEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3455555 3444555555543        27999999987    3444455 9999999999999999999999999999


Q ss_pred             cC-------CCeEEEEEEeCCCC
Q psy9827         269 SS-------KEKLSLTIRREVPR  284 (627)
Q Consensus       269 ~~-------~~~v~l~V~r~~~~  284 (627)
                      .+       +..|+|+|.|+...
T Consensus       102 ~~~~~~g~~~~~v~l~v~R~~~~  124 (127)
T 1wg6_A          102 RSMSMEGNIRGMIQLVILRRSGP  124 (127)
T ss_dssp             HHHHHHHHHTCEEEEEEEECSCS
T ss_pred             HhhccccCCCCEEEEEEEeCCCC
Confidence            76       78999999997653

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.77  E-value=2.7e-08  Score=85.55  Aligned_cols=83  Identities=22%  Similarity=0.262  Sum_probs=66.4

Q ss_pred             CccEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ..+..|.|.+.. ...||.+..+    .+++|..|.++    ++|..++|++||+|++|||+++.+++++++..+|+. +
T Consensus        14 ~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~   88 (104)
T 1wi2_A           14 FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPD----SDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-A   88 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTT----SHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-S
T ss_pred             CCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-C
Confidence            345778888865 4445555443    37999999887    455567899999999999999998889999999998 7


Q ss_pred             CeEEEEEEeCCCC
Q psy9827         272 EKLSLTIRREVPR  284 (627)
Q Consensus       272 ~~v~l~V~r~~~~  284 (627)
                      ..+.|+|.|+..+
T Consensus        89 ~~v~l~v~r~~~~  101 (104)
T 1wi2_A           89 REISMRVRFFSGP  101 (104)
T ss_dssp             SSEEEEEECCCCS
T ss_pred             CEEEEEEEECCCC
Confidence            8899999987554

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.76  E-value=2.1e-08  Score=87.30  Aligned_cols=83  Identities=19%  Similarity=0.366  Sum_probs=67.8

Q ss_pred             ccEEEEEeecCCCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      ....|.|.+...+.||.+..+  .|++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+++..+..+
T Consensus        15 ~~~~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v   90 (111)
T 2dlu_A           15 HVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPG----GLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSV   90 (111)
T ss_dssp             EEEEEEEECCSSCCCEEEECCSSSSBEEEEECTT----SSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEE
T ss_pred             ceEEEEEEeCCCccCEEEeccCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            356788887766666666554  58999999887    3555566 9999999999999999999999999999888899


Q ss_pred             EEEEEeCCCC
Q psy9827         275 SLTIRREVPR  284 (627)
Q Consensus       275 ~l~V~r~~~~  284 (627)
                      .|+|.|+...
T Consensus        91 ~l~v~R~~~~  100 (111)
T 2dlu_A           91 RMLVARDPAG  100 (111)
T ss_dssp             EEEEEESCTT
T ss_pred             EEEEEeCCCC
Confidence            9999997654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.76  E-value=1.9e-08  Score=94.50  Aligned_cols=81  Identities=26%  Similarity=0.357  Sum_probs=66.3

Q ss_pred             ccEEEEEeecCCCCCeeeee---C-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL---G-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~---~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ..+.|.|.++..+.||.+..   +       .|++|..|.+|+   +|++.+.|++||+|++|||+++.++++.+++.+|
T Consensus        80 ~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gs---pA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l  156 (170)
T 3egg_C           80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGG---AAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL  156 (170)
T ss_dssp             EEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTS---HHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHH
T ss_pred             eEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCC---hHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            45678888877666666665   1       379999999873   3344444999999999999999999999999999


Q ss_pred             HcCCCeEEEEEEeC
Q psy9827         268 DSSKEKLSLTIRRE  281 (627)
Q Consensus       268 ~~~~~~v~l~V~r~  281 (627)
                      +.++..++|+|.|+
T Consensus       157 ~~~g~~v~L~V~R~  170 (170)
T 3egg_C          157 RNTKGRVRFMIGRE  170 (170)
T ss_dssp             HHCCSEEEEEEEEC
T ss_pred             HcCCCEEEEEEEeC
Confidence            99999999999884

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.76  E-value=1.7e-08  Score=85.96  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=63.3

Q ss_pred             EEEEeecCCCCCeeeeeCC-----------cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         201 RVQLSKSRKKDDFGIILGN-----------KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       201 ~V~L~k~~~~~~~gi~~~~-----------gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      .|.+.+...+.||.+....           |++|..|.++    ++|..+||++||+|++|||+++.+++++++..+++.
T Consensus         5 ~v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~   80 (99)
T 3khf_A            5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDG----SPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK   80 (99)
T ss_dssp             CEEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CEEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            4566666555555555321           6789999886    456667899999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCC
Q psy9827         270 SKEKLSLTIRREVP  283 (627)
Q Consensus       270 ~~~~v~l~V~r~~~  283 (627)
                      .+..+.|+|.|++.
T Consensus        81 ~g~~v~l~v~r~~~   94 (99)
T 3khf_A           81 SGNKISLRTTALEN   94 (99)
T ss_dssp             SCSEEEEEEECSCS
T ss_pred             CCCEEEEEEEECCC
Confidence            99999999999764

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.76  E-value=3.4e-08  Score=85.79  Aligned_cols=83  Identities=24%  Similarity=0.365  Sum_probs=64.6

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      .+....|.+.|. .+.+|.+.++      .+++|..|.++    ++|..++ |++||+|++|||+++.++++++++++|+
T Consensus        13 ~~~~~~v~l~k~-~glG~~i~gg~~~~~~~~~~V~~v~~~----s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~   87 (109)
T 1wi4_A           13 DPAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPG----GDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT   87 (109)
T ss_dssp             CTTEEEEEECCS-SCCCEEEEECSSSSSCSSEEEEEECTT----SHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHH
T ss_pred             CCcEEEEEEeCC-CccCEEEEeccCCCCCCCEEEEEeCCC----ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            345566777775 4555555543      26999999987    3444455 9999999999999999999999999999


Q ss_pred             cCC----CeEEEEEEeCCC
Q psy9827         269 SSK----EKLSLTIRREVP  283 (627)
Q Consensus       269 ~~~----~~v~l~V~r~~~  283 (627)
                      .+.    ..++|.+.|+..
T Consensus        88 ~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           88 RAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             HSCCSSSSCEEEEEECCCC
T ss_pred             ccccCCCceEEEEEEeCCC
Confidence            865    589999999754

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.76  E-value=2.5e-08  Score=83.15  Aligned_cols=80  Identities=23%  Similarity=0.325  Sum_probs=63.2

Q ss_pred             cEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         199 TLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .+.|++. +..+.||.+..+    .+++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..+..+
T Consensus         4 ~~~v~~~-~~~~~G~~l~gg~~~~~~v~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v   78 (89)
T 2q3g_A            4 SFKVVLE-GPAPWGFRLQGGKDFNVPLSISRLTPG----GKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERL   78 (89)
T ss_dssp             EEEEEEE-SSSCCCEEEEEEGGGTEEEEEEEECTT----SHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEE
T ss_pred             EEEEEEc-CCCcccEEEECcCCCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence            3456664 334455555442    37999999886    45666789999999999999999999999999999888899


Q ss_pred             EEEEEeCCC
Q psy9827         275 SLTIRREVP  283 (627)
Q Consensus       275 ~l~V~r~~~  283 (627)
                      .|+|.|++.
T Consensus        79 ~l~v~R~~~   87 (89)
T 2q3g_A           79 SLGLSRAIT   87 (89)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEeCCC
Confidence            999998654

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.76  E-value=2.2e-08  Score=85.08  Aligned_cols=80  Identities=24%  Similarity=0.300  Sum_probs=62.7

Q ss_pred             cEEEEEee-cCCCCCeeeeeC----------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         199 TLRVQLSK-SRKKDDFGIILG----------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       199 ~~~V~L~k-~~~~~~~gi~~~----------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      ...|+|.| ...+.||.+..+          .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+
T Consensus         6 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~----spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~   81 (98)
T 1ihj_A            6 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPD----SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDL   81 (98)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTT----SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35677777 333444444332          27999999887    4555667 99999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCC
Q psy9827         267 IDSSKEKLSLTIRREV  282 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~  282 (627)
                      ++..+..+.|+|.|++
T Consensus        82 l~~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           82 IKEADFKIELEIQTFD   97 (98)
T ss_dssp             HHHSCSEEEEEEEEC-
T ss_pred             HhcCCCeEEEEEEeCC
Confidence            9998889999999964

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.75  E-value=6.5e-09  Score=90.59  Aligned_cols=86  Identities=22%  Similarity=0.314  Sum_probs=68.2

Q ss_pred             CCccEEEEEeecC-CCCCeeeeeCC-------------cEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCH
Q psy9827         196 EPQTLRVQLSKSR-KKDDFGIILGN-------------KIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSV  260 (627)
Q Consensus       196 ~~~~~~V~L~k~~-~~~~~gi~~~~-------------gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~  260 (627)
                      .+....|.|.|.. .+.+|.+..+.             |++|..|.++    ++|..++ |++||+|++|||+++.++++
T Consensus         7 ~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~vng~~v~~~~~   82 (111)
T 1uju_A            7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPT----GAAGRDGRLRVGLRLLEVNQQSLLGLTH   82 (111)
T ss_dssp             SCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTT----SHHHHHSSCCTTCBCCBBSSCBCTTSCH
T ss_pred             CCccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4456678888764 44555555432             6899999887    3555566 99999999999999999999


Q ss_pred             HHHHHHHHcCCCeEEEEEEeCCCCC
Q psy9827         261 KEARKLIDSSKEKLSLTIRREVPRP  285 (627)
Q Consensus       261 ~e~~~~l~~~~~~v~l~V~r~~~~~  285 (627)
                      .+++.+++..+..+.|+|.|+....
T Consensus        83 ~~~~~~l~~~g~~v~l~v~r~~~~~  107 (111)
T 1uju_A           83 GEAVQLLRSVGDTLTVLVCDGFESG  107 (111)
T ss_dssp             HHHHHHHSSCSSEEEECCCCCCCCS
T ss_pred             HHHHHHHHcCCCeEEEEEEECCCCC
Confidence            9999999998889999999876543

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.75  E-value=1.5e-08  Score=88.61  Aligned_cols=83  Identities=25%  Similarity=0.378  Sum_probs=68.2

Q ss_pred             ccEEEEEeecCCCCCeeeee---C-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL---G-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~---~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      ..+.|.|.+...+.||.+..   +       .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+
T Consensus         4 ~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~----s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~   79 (113)
T 2g5m_B            4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEG----GAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASV   79 (113)
T ss_dssp             EEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTT----SHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHH
T ss_pred             EEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45677787776666666665   1       38999999887    3455566 99999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCCCC
Q psy9827         267 IDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~~~  284 (627)
                      ++..+..+.|.|.|+...
T Consensus        80 ~~~~g~~v~l~v~R~~~~   97 (113)
T 2g5m_B           80 LRNTKGRVRFMIGRERPG   97 (113)
T ss_dssp             HHHSCSSCEEEEEECCCC
T ss_pred             HhcCCCeEEEEEEeCCCC
Confidence            999999999999997654

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.75  E-value=2.7e-08  Score=87.73  Aligned_cols=85  Identities=18%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             CCccEEEEEeecCCC-CCeeeeeCC----cEEEEEeccCCCCCCCCCC-CCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         196 EPQTLRVQLSKSRKK-DDFGIILGN----KIFVKEVTHRLDNNASPGT-HQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~-~~~gi~~~~----gi~V~~V~~g~~~~~~a~~-~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      ....+.|.|.|...+ .+|.+..+.    +++|..|.+++   +|++. ++|++||+|++|||+++.++++.++..+++.
T Consensus        13 ~~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~s---pA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~   89 (119)
T 2cs5_A           13 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGT---PADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   89 (119)
T ss_dssp             SSCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSS---TTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             CCCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCC---HHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            335677888886533 555555442    79999999873   33333 4999999999999999999999999999998


Q ss_pred             CC----CeEEEEEEeCCC
Q psy9827         270 SK----EKLSLTIRREVP  283 (627)
Q Consensus       270 ~~----~~v~l~V~r~~~  283 (627)
                      .+    ..+.|+|.|+..
T Consensus        90 ~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           90 SCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             HHHCCSSCEEEEEECCCC
T ss_pred             ccccCCCEEEEEEEcccc
Confidence            64    489999998643

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.74  E-value=1.9e-08  Score=87.16  Aligned_cols=84  Identities=17%  Similarity=0.363  Sum_probs=65.5

Q ss_pred             CCccEEEEEeecCCCCCeeeee--C---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIIL--G---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEA  263 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~--~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~  263 (627)
                      ....+.|.|.+.....+|||.+  +         .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++
T Consensus        10 ~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~   85 (108)
T 2jre_A           10 GFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPG----SAAALDGRIEPNDKILRVDDVNVQGMAQSDV   85 (108)
T ss_dssp             SCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTT----SHHHHHSSCCSSEEEEEETTEECTTSCHHHH
T ss_pred             CcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            4456778885333344455544  2         28999999887    3555567 99999999999999998889999


Q ss_pred             HHHHHcCCCeEEEEEEeCCC
Q psy9827         264 RKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       264 ~~~l~~~~~~v~l~V~r~~~  283 (627)
                      ..+++..+..+.|+|.|++.
T Consensus        86 ~~~l~~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           86 VEVLRNAGNPVRLLLIRRLP  105 (108)
T ss_dssp             HHHHHHHCSEEEEEEEECCC
T ss_pred             HHHHHcCCCeEEEEEEeCCc
Confidence            99999888899999999764

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.74  E-value=1.9e-08  Score=87.13  Aligned_cols=84  Identities=19%  Similarity=0.340  Sum_probs=68.9

Q ss_pred             CccEEEEEeecCCCCCeeee-----eC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHH
Q psy9827         197 PQTLRVQLSKSRKKDDFGII-----LG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEA  263 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~-----~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~  263 (627)
                      ...+.|.|.+...+.||.+.     ++       .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++
T Consensus         8 ~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~   83 (108)
T 1q7x_A            8 GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQ----GAAESDGRIHKGDRVLAVNGVSLEGATHKQA   83 (108)
T ss_dssp             SSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTT----STHHHHTCCCSSCEEEEETTEECBSCTTSHH
T ss_pred             CcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCC----ChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            45678888887666666665     21       58999999887    3455566 99999999999999999999999


Q ss_pred             HHHHHcCCCeEEEEEEeCCCC
Q psy9827         264 RKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       264 ~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ..+++..+..+.|.|.|++..
T Consensus        84 ~~~~~~~g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           84 VETLRNTGQVVHLLLEKGQSP  104 (108)
T ss_dssp             HHHHHHTTSEEEEEEECCCCS
T ss_pred             HHHHHcCCCeEEEEEEeCCcc
Confidence            999999989999999997643

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.74  E-value=6.3e-08  Score=83.64  Aligned_cols=81  Identities=20%  Similarity=0.351  Sum_probs=62.9

Q ss_pred             cEEEEEeec-CCCCCeeeee-CCcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         199 TLRVQLSKS-RKKDDFGIIL-GNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       199 ~~~V~L~k~-~~~~~~gi~~-~~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      .+.|.|.+. ..+.||.+.. ..|++|..|.+|    ++|..+| |++||+|++|||+++.++++.++..+++..++.+.
T Consensus         3 ~~~v~L~k~~~~glG~~i~~~~~gv~V~~V~~g----spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~   78 (106)
T 2la8_A            3 KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQG----QYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVS   78 (106)
T ss_dssp             EEEEEECCBSSSTTCCEEEECSSSEEEEECCTT----SCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEE
T ss_pred             EEEEEEEeCCCCccCEEEEeCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Confidence            456777743 2333443333 358999999987    3444556 99999999999999999999999999999888999


Q ss_pred             EEEEeCCC
Q psy9827         276 LTIRREVP  283 (627)
Q Consensus       276 l~V~r~~~  283 (627)
                      |.|.|...
T Consensus        79 l~v~R~~~   86 (106)
T 2la8_A           79 MEVTRPKP   86 (106)
T ss_dssp             EEEEECCS
T ss_pred             EEEEeCCC
Confidence            99999644

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.74  E-value=1.8e-08  Score=85.56  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             cEEEEEeecC-CCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         199 TLRVQLSKSR-KKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       199 ~~~V~L~k~~-~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      ++.|.|.|.. ...++.+...  .+++|.+|.++    ++|..+| |++||+|++|||+++.+++++++..+|+..++.+
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~g----spA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v   88 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKLNEKQSCTVARILHG----GMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMI   88 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEECTTCCEEEEEECSS----SHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEE
T ss_pred             cEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            4567787754 2334444432  58999999887    3455566 9999999999999999989999999999888899


Q ss_pred             EEEEEeC
Q psy9827         275 SLTIRRE  281 (627)
Q Consensus       275 ~l~V~r~  281 (627)
                      +|+|.+.
T Consensus        89 ~L~V~~~   95 (97)
T 2ejy_A           89 SLKVIPN   95 (97)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            9999874

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.74  E-value=2.9e-08  Score=88.32  Aligned_cols=82  Identities=23%  Similarity=0.310  Sum_probs=67.1

Q ss_pred             ccEEEEEeecCCCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ..+.|.|.+...+.+|.+..+     .+++|..|.++    ++|..+| |++||+|++|||+++.++++.+++.+++..+
T Consensus        25 ~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~  100 (124)
T 2daz_A           25 ELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPE----GPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP  100 (124)
T ss_dssp             EEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTT----SHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred             ceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456788888765556665554     48999999887    3445555 9999999999999999999999999999988


Q ss_pred             CeEEEEEEeCCC
Q psy9827         272 EKLSLTIRREVP  283 (627)
Q Consensus       272 ~~v~l~V~r~~~  283 (627)
                      ..+.|+|.|+..
T Consensus       101 ~~v~l~v~R~~~  112 (124)
T 2daz_A          101 SKVKLVFIRNED  112 (124)
T ss_dssp             SEEEEEEEECTT
T ss_pred             CeEEEEEEeCCC
Confidence            899999999754

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.74  E-value=1.4e-08  Score=86.67  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=67.4

Q ss_pred             CccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEE
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL  276 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l  276 (627)
                      ...+.+.+.+...+.+|.+....+++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..++.+.|
T Consensus        14 ~~~~~v~l~~~~~g~G~~~~~~~~~~V~~V~~~----spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l   89 (100)
T 1whd_A           14 GEKLQITIRRGKDGFGFTICCDSPVRVQAVDSG----GPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIIL   89 (100)
T ss_dssp             CEEEEEEEECCSSSSSCBCCCSSSCBCCBCCTT----SHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEE
T ss_pred             cceEEEEEECCCCeeeEEEeCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            355677787765554554444578999999876    4566678999999999999999999999999999988888999


Q ss_pred             EEEeCCC
Q psy9827         277 TIRREVP  283 (627)
Q Consensus       277 ~V~r~~~  283 (627)
                      +|.|+..
T Consensus        90 ~v~R~~~   96 (100)
T 1whd_A           90 LVWRVSG   96 (100)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9999754

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.74  E-value=5.5e-08  Score=84.49  Aligned_cols=86  Identities=19%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             CCCccEEEEEeecCCCCCeeeee----------CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         195 PEPQTLRVQLSKSRKKDDFGIIL----------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~~~~~gi~~----------~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      .....+.+.+.+...+.||.+..          ..+++|..|.++    ++|..++|++||+|++|||+++.++++.++.
T Consensus        12 ~~~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~   87 (110)
T 1x5q_A           12 IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEE----GPAARAGVRVGDKLLEVNGVALQGAEHHEAV   87 (110)
T ss_dssp             CCCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCcceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCcCHHHHH
Confidence            34456778888876666666653          258999999886    4566678999999999999999998899999


Q ss_pred             HHHHcCCCeEEEEEEeCCCC
Q psy9827         265 KLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ..++..+..+.|+|.|++..
T Consensus        88 ~~~~~~g~~v~l~v~R~g~~  107 (110)
T 1x5q_A           88 EALRGAGTAVQMRVWRESGP  107 (110)
T ss_dssp             HHHHSCCSEEEEEEEECSSC
T ss_pred             HHhhCCCCeEEEEEEECCcc
Confidence            98888889999999997653

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.73  E-value=4.4e-08  Score=87.77  Aligned_cols=86  Identities=20%  Similarity=0.334  Sum_probs=68.1

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ....+.|.|.++..+.||.+..+    .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+..
T Consensus        16 ~g~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~----spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~   91 (129)
T 2kpk_A           16 KGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLD----GPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI   91 (129)
T ss_dssp             CSEEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTT----SHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             CCcEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            33456788888766666655553    25999999887    3455556 999999999999999999999999999987


Q ss_pred             --CCeEEEEEEeCCCCC
Q psy9827         271 --KEKLSLTIRREVPRP  285 (627)
Q Consensus       271 --~~~v~l~V~r~~~~~  285 (627)
                        +..+.|+|.|+...+
T Consensus        92 ~~g~~v~l~v~R~~~~~  108 (129)
T 2kpk_A           92 PIGASVDLELCRGYPLP  108 (129)
T ss_dssp             CTTEEEEEEEEECSCCS
T ss_pred             CCCCeEEEEEEeCCCCC
Confidence              568999999976543

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.73  E-value=2.5e-08  Score=86.00  Aligned_cols=80  Identities=18%  Similarity=0.241  Sum_probs=65.8

Q ss_pred             EEEEEeecC-CCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         200 LRVQLSKSR-KKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       200 ~~V~L~k~~-~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      ..|.|.+.. ...+|++...   .|++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..+..++
T Consensus         3 r~v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   78 (106)
T 3ngh_A            3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEG----SPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVT   78 (106)
T ss_dssp             EEEEEECCTTCCCCCEEECCTTCCSCEEECCCTT----SHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEE
T ss_pred             EEEEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEE
Confidence            456777764 4556666654   47999999886    466678899999999999999999999999999998889999


Q ss_pred             EEEEeCCC
Q psy9827         276 LTIRREVP  283 (627)
Q Consensus       276 l~V~r~~~  283 (627)
                      |+|.|++.
T Consensus        79 l~v~r~~~   86 (106)
T 3ngh_A           79 LLVLDGDS   86 (106)
T ss_dssp             EEEECHHH
T ss_pred             EEEEECCe
Confidence            99998653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.72  E-value=1.5e-07  Score=92.15  Aligned_cols=149  Identities=19%  Similarity=0.177  Sum_probs=103.2

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCccc--------CCC-------CCCCCHHHHHHHHhcccc-----cCCcee-
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA--------PRK-------FNFILWATIKDTAMYQSS-----KEPGMY-  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~--------~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y-  508 (627)
                      ..+.++|+||+   |+||.+.|...+|..+..        +.+       ..|.+.+.|..++..+++     +.+|+| 
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g  101 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYG  101 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCC
Confidence            46789999999   999999998877723321        111       147788889887643322     246677 


Q ss_pred             ----hHHhHHhCCCcEEEecC--CceeccccC--CCCceeEEEEcCCCcccC-------CCCCHHHHHHHHHHHHHHHHH
Q psy9827         509 ----QGKDSMYQGKDSMYQGK--ESMYQGKDS--MYQGKDSMYQGKDSMYQG-------KDIKKEVKIKLFEQSQKLEKV  573 (627)
Q Consensus       509 ----~V~~v~~~gk~ciLdi~--~~l~~~~~~--~~P~~~vIFI~ppsl~~~-------~~~~e~~~~~~~~~~~~~e~~  573 (627)
                          .++++++.++.|+++++  +....|..-  ..|.  .+|+.+|++..+       .+.+++.+.+.+.++.+ +..
T Consensus       102 ~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~--~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~  178 (218)
T 1z6g_A          102 TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNAL--YIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI-ELH  178 (218)
T ss_dssp             EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCE--EEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH-HHH
T ss_pred             CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcE--EEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHH
Confidence                78999999999999998  222111111  2357  899999995433       34456656666655533 323


Q ss_pred             hc--CcccEEEECCCHHHHHHHHHHHHHhhCCC
Q psy9827         574 WS--HVFTGTITLSGVDVWYRKTRELIEKQQSS  604 (627)
Q Consensus       574 ~~--~~fd~vi~n~~l~~~~~~l~~~i~~~~~~  604 (627)
                      +.  ..||.||+|+|+++++..+..+|..+..+
T Consensus       179 ~~h~~~~d~iiv~~~~~ea~~~~~~ii~~~~~~  211 (218)
T 1z6g_A          179 EANLLNFNLSIINDDLTLTYQQLKNYLLNSYIH  211 (218)
T ss_dssp             HHTTSCCSEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred             hhcccCCCEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            55  67999999999999999999999876543

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.71  E-value=5.1e-08  Score=85.20  Aligned_cols=83  Identities=18%  Similarity=0.256  Sum_probs=66.2

Q ss_pred             ccEEEEEeecCC-CCCeeeeeC-CcEEEEEeccCCCCCCCCCCCCC-CCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         198 QTLRVQLSKSRK-KDDFGIILG-NKIFVKEVTHRLDNNASPGTHQL-AEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       198 ~~~~V~L~k~~~-~~~~gi~~~-~gi~V~~V~~g~~~~~~a~~~~L-~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      ....|.|.|... +.||.+... .+++|..|.++    ++|..+|| ++||+|++|||+++.+++++++..+|+..++.+
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~~~~~gv~V~~V~~~----spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v  100 (113)
T 1va8_A           25 TVKIVRIEKARDIPLGATVRNEMDSVIISRIVKG----GAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTL  100 (113)
T ss_dssp             ECEEEEEEECTTCCCCEEEEECSSSEEEEEECTT----SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEE
T ss_pred             ceEEEEEEeCCCCceeEEEEeCCCCEEEEEeCCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            345688888754 444444443 68999999887    35555667 999999999999999999999999999888899


Q ss_pred             EEEEEeCCCC
Q psy9827         275 SLTIRREVPR  284 (627)
Q Consensus       275 ~l~V~r~~~~  284 (627)
                      +|+|.|....
T Consensus       101 ~l~v~r~~~~  110 (113)
T 1va8_A          101 TFVLIPSSGP  110 (113)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEECCcc
Confidence            9999987653

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.71  E-value=5.6e-08  Score=81.32  Aligned_cols=80  Identities=24%  Similarity=0.344  Sum_probs=63.4

Q ss_pred             EEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         200 LRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      +.|.+.. ..+.||.+..+    .+++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..+..+.
T Consensus         5 ~~v~~~~-~~~~G~~l~~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2pkt_A            5 QQIDLQG-PGPWGFRLVGGKDFEQPLAISRVTPG----SKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLT   79 (91)
T ss_dssp             EEEEEES-SSCCSEEEEEEGGGTEEEEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             EEEEECC-CCCCCEEEEccCCCCCCeEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            3444543 34455555544    48999999886    466677899999999999999999999999999999888999


Q ss_pred             EEEEeCCCC
Q psy9827         276 LTIRREVPR  284 (627)
Q Consensus       276 l~V~r~~~~  284 (627)
                      |.|.|++..
T Consensus        80 l~v~R~g~~   88 (91)
T 2pkt_A           80 LTVARSEHE   88 (91)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEECCcc
Confidence            999997653

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.71  E-value=3.5e-08  Score=84.81  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             ccEEEEEeecCCCCCeeeeeCC----c-EEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc---
Q psy9827         198 QTLRVQLSKSRKKDDFGIILGN----K-IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS---  269 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~~----g-i~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~---  269 (627)
                      ....|.|.+...+.+|.+..+.    + ++|..|.+++   +|++.+.|++||+|++|||+++.++++++++.+|+.   
T Consensus         6 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s---~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   82 (103)
T 1ufx_A            6 SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGG---SAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFK   82 (103)
T ss_dssp             SSEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTS---HHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCC---hHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcc
Confidence            3456777766555555555442    3 4999998872   333334499999999999999999999999999997   


Q ss_pred             --CCCeEEEEEEeCCCCC
Q psy9827         270 --SKEKLSLTIRREVPRP  285 (627)
Q Consensus       270 --~~~~v~l~V~r~~~~~  285 (627)
                        .++.+.|.|.|....+
T Consensus        83 ~~~~~~i~l~v~r~~~~~  100 (103)
T 1ufx_A           83 TKDRDYIDFLVTEFNSGP  100 (103)
T ss_dssp             CSSCSEEEEEECCCCCCT
T ss_pred             cCCCCeEEEEEEEcccCC
Confidence              4678999999976543

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.5e-08  Score=87.39  Aligned_cols=84  Identities=13%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      .+.+..|.|.|...+.+|.+...   .|++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..++
T Consensus         6 ~~~~r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   81 (106)
T 2eei_A            6 SGQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQ----GVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGS   81 (106)
T ss_dssp             CSSSEEEEEECCSSSCSCCEECCSSCCSCEECCCCTT----SHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCS
T ss_pred             CCCCEEEEEEECCCCCCEEEEeccCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45677888998655555555332   58999999876    455667799999999999999999999999999988888


Q ss_pred             eEEEEEEeCCC
Q psy9827         273 KLSLTIRREVP  283 (627)
Q Consensus       273 ~v~l~V~r~~~  283 (627)
                      .+.|.|.|...
T Consensus        82 ~v~l~v~r~~~   92 (106)
T 2eei_A           82 RVMFLLVDKET   92 (106)
T ss_dssp             EEEEEECCTTT
T ss_pred             eEEEEEEcCch
Confidence            99999988654

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.70  E-value=4.9e-08  Score=94.21  Aligned_cols=73  Identities=29%  Similarity=0.601  Sum_probs=65.8

Q ss_pred             CceeEEEEccC------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827          60 GSVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus        60 g~lG~~i~g~~------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      .+|||.+.++.      ..|++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|+|.|+..
T Consensus       117 ~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~  196 (200)
T 2qt5_A          117 NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVS  196 (200)
T ss_dssp             TBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            47999998763      3589999999999999999 9999999999999999999999999998888999999998654

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.70  E-value=1.4e-08  Score=87.08  Aligned_cols=86  Identities=22%  Similarity=0.331  Sum_probs=68.2

Q ss_pred             CCccEEEEEeecCCCCCeeeeeCC----cEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILGN----KIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~~----gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ....+.+.+.+...+.||.+..+.    +++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++..
T Consensus         9 ~~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~----spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   84 (103)
T 1wfv_A            9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAED----GPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG   84 (103)
T ss_dssp             CSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTT----SHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHH
T ss_pred             CceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            345567777776555555555432    8999999887    3555667 999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCCCCC
Q psy9827         271 KEKLSLTIRREVPRP  285 (627)
Q Consensus       271 ~~~v~l~V~r~~~~~  285 (627)
                      +..+.|+|.|++...
T Consensus        85 g~~v~l~v~R~~~~~   99 (103)
T 1wfv_A           85 GRRVRLLLKRGTGSG   99 (103)
T ss_dssp             CSEECEEEECTTCSS
T ss_pred             CCeEEEEEEECCCCC
Confidence            889999999977654

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.70  E-value=6.8e-08  Score=84.00  Aligned_cols=85  Identities=27%  Similarity=0.357  Sum_probs=67.1

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ....+.+.+.+...+.||.+...       .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..++
T Consensus         9 ~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~----spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l   84 (111)
T 2koj_A            9 VGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPR----GAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL   84 (111)
T ss_dssp             SCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSS----SHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHH
T ss_pred             cCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCC----ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34556777777655555555543       47999999887    3555566 999999999999999988999999999


Q ss_pred             HcC--CCeEEEEEEeCCCC
Q psy9827         268 DSS--KEKLSLTIRREVPR  284 (627)
Q Consensus       268 ~~~--~~~v~l~V~r~~~~  284 (627)
                      +..  +..+.|.|.|++..
T Consensus        85 ~~~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           85 RSTKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             HHCCCSSEEEEEEEECCCC
T ss_pred             HhCCCCCeEEEEEEeCCCC
Confidence            975  67999999997654

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.69  E-value=2.7e-08  Score=87.45  Aligned_cols=82  Identities=23%  Similarity=0.304  Sum_probs=66.0

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCC-CCCHHHHHHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTD-GMSVKEARKLI  267 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~-~~s~~e~~~~l  267 (627)
                      ....|.|.|.. .+.||.+..+       .|++|..|.++    ++|..+| |++||+|++|||+++. +++++++..++
T Consensus        20 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~----spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l   95 (117)
T 2o2t_A           20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEG----SVAHRDGRLKETDQILAINGQALDQTITHQQAISIL   95 (117)
T ss_dssp             CEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTT----SHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHH
T ss_pred             eEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHH
Confidence            45667777753 4455555543       37999999887    3555566 9999999999999998 99999999999


Q ss_pred             HcCCCeEEEEEEeCCC
Q psy9827         268 DSSKEKLSLTIRREVP  283 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~~  283 (627)
                      +..++.+.|+|.|++.
T Consensus        96 ~~~~~~v~l~v~R~~~  111 (117)
T 2o2t_A           96 QKAKDTVQLVIARGSL  111 (117)
T ss_dssp             HHCCSEEEEEEESSCC
T ss_pred             HcCCCEEEEEEEeCCc
Confidence            9988999999999764

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.69  E-value=4.2e-08  Score=88.14  Aligned_cols=60  Identities=27%  Similarity=0.381  Sum_probs=52.7

Q ss_pred             cEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC--CeEEEEEEeCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVP  283 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~--~~v~l~V~r~~~  283 (627)
                      +++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+.+.  ..+.|+|.|++.
T Consensus        66 gv~V~~V~~g----spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~  128 (131)
T 1wfg_A           66 CAFITKVKKG----SLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP  128 (131)
T ss_dssp             EEEEEEECTT----SHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred             CEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence            8999999887    3455566 9999999999999999999999999999864  799999999754

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.69  E-value=3.9e-08  Score=87.98  Aligned_cols=83  Identities=28%  Similarity=0.400  Sum_probs=65.0

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCC-CCCHHHHHHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTD-GMSVKEARKLI  267 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~-~~s~~e~~~~l  267 (627)
                      ....|.|.|.. .+.||.+..+       .|++|..|.++    ++|..+| |++||+|++|||+++. ++++++++.+|
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l  100 (128)
T 2db5_A           25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPG----SVADRDQRLKENDQILAINHTPLDQNISHQQAIALL  100 (128)
T ss_dssp             EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTT----SHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHH
Confidence            34567777764 3445554432       27999999887    3445556 9999999999999997 99999999999


Q ss_pred             HcCCCeEEEEEEeCCCC
Q psy9827         268 DSSKEKLSLTIRREVPR  284 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~~~  284 (627)
                      +..+..+.|+|.|+...
T Consensus       101 ~~~~~~v~l~v~r~~~~  117 (128)
T 2db5_A          101 QQTTGSLRLIVAREPVH  117 (128)
T ss_dssp             HHCCSEEEEEEEECCCS
T ss_pred             HcCCCeEEEEEEcCCCC
Confidence            99889999999997543

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.69  E-value=4.4e-08  Score=84.58  Aligned_cols=73  Identities=23%  Similarity=0.343  Sum_probs=60.4

Q ss_pred             cCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEE
Q psy9827         207 SRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL  276 (627)
Q Consensus       207 ~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l  276 (627)
                      ...++||.+.+|         .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++..++.+.|
T Consensus        11 ~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~g----spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l   86 (106)
T 4amh_A           11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEG----GAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYL   86 (106)
T ss_dssp             -CCCSCEEEEECTTSCSBTTBCCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEE
T ss_pred             CCCccCEEEEeccCCccccCCCCEEEEEECCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Confidence            345566666654         27999999987    3455566 999999999999999999999999999999999999


Q ss_pred             EEEeCCC
Q psy9827         277 TIRREVP  283 (627)
Q Consensus       277 ~V~r~~~  283 (627)
                      +|.|++.
T Consensus        87 ~v~R~~~   93 (106)
T 4amh_A           87 KVAKPGS   93 (106)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            9999764

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=5e-08  Score=82.19  Aligned_cols=81  Identities=21%  Similarity=0.300  Sum_probs=64.2

Q ss_pred             ccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCe
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK  273 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~  273 (627)
                      .++.|+|. +..+++|.+..+    .+++|..|.++    ++|..++|++||+|++|||+++.++++.++..+++..+..
T Consensus         8 ~~~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   82 (94)
T 2eeg_A            8 MPHSVTLR-GPSPWGFRLVGGRDFSAPLTISRVHAG----SKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDH   82 (94)
T ss_dssp             CCEEEEEC-CSSCCSCCEECCTTTTSCCEECCCCSS----SHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSC
T ss_pred             ceEEEEEe-CCCccCEEEECccCCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            45667773 334555555543    47999999876    4566678999999999999999998899999999988889


Q ss_pred             EEEEEEeCCC
Q psy9827         274 LSLTIRREVP  283 (627)
Q Consensus       274 v~l~V~r~~~  283 (627)
                      +.|+|.|++.
T Consensus        83 v~l~v~R~g~   92 (94)
T 2eeg_A           83 LTLSVSSGPS   92 (94)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEEeCCC
Confidence            9999998654

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.69  E-value=4.6e-08  Score=79.67  Aligned_cols=74  Identities=42%  Similarity=0.727  Sum_probs=59.7

Q ss_pred             EeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy9827         204 LSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  281 (627)
Q Consensus       204 L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~  281 (627)
                      .........||+....|++|..|.++    ++|..++ |++||+|++|||+++.++++.++..+++...+.+.|.|.|+
T Consensus         6 ~~~~~~~~~~g~~~~~gv~V~~v~~~----s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A            6 LVKSRKNEEYGLRLASHIFVKEISQD----SLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             EECCSTTCCCCEEEEEEEEEEEECTT----SHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             EEECCCCCCCCEEEeCCEEEEEECCC----ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            33333455677766678999999887    3455567 99999999999999999999999999998777999999875

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.68  E-value=1.1e-07  Score=81.48  Aligned_cols=80  Identities=28%  Similarity=0.387  Sum_probs=64.6

Q ss_pred             CccEEEEEeecCCCCCeeeeeC------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      ...+.|.+.+.. +.+|.+..+            .|++|..|.++    ++|.. +|++||+|++|||+++.++++.++.
T Consensus        10 ~~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~----spA~~-gL~~GD~I~~vng~~v~~~~~~~~~   83 (103)
T 1n7t_A           10 KQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPE----GPASK-LLQPGDKIIQANGYSFINIEHGQAV   83 (103)
T ss_dssp             CCCEEEEEECSS-CCCBEEEECTTSSBCSSCSSCCSEECCCBSSS----STTSS-SCCTTCEEEEETTEECSSCCHHHHH
T ss_pred             cEEEEEEEccCC-CccEEEEcccCCCCCccccCCCCEEEEEECCC----CchHH-CCCCCCEEEEECCEECCCCCHHHHH
Confidence            345677777754 556666552            38999999887    34445 9999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEeCC
Q psy9827         265 KLIDSSKEKLSLTIRREV  282 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~~  282 (627)
                      ..++..+..+.|+|.|+.
T Consensus        84 ~~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           84 SLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHHCCSEEEEEEECCC
T ss_pred             HHhhcCCCeEEEEEEecC
Confidence            999988899999999863

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.68  E-value=7.1e-08  Score=81.62  Aligned_cols=81  Identities=19%  Similarity=0.286  Sum_probs=65.3

Q ss_pred             cEEEEEeecCCCCCeeeee----------CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         199 TLRVQLSKSRKKDDFGIIL----------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~----------~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      .+.+.+.+...+.||.+..          ..+++|..|.++    ++|..+||++||+|++|||+++.+++..++...++
T Consensus         4 ~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~   79 (97)
T 2w4f_A            4 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEE----GPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALR   79 (97)
T ss_dssp             EEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            4567777765555555553          258999999887    45666789999999999999999988888888888


Q ss_pred             cCCCeEEEEEEeCCC
Q psy9827         269 SSKEKLSLTIRREVP  283 (627)
Q Consensus       269 ~~~~~v~l~V~r~~~  283 (627)
                      ..+..+.|.|.|++.
T Consensus        80 ~~g~~v~l~v~R~g~   94 (97)
T 2w4f_A           80 GAGTAVQMRVWRERE   94 (97)
T ss_dssp             TSCSEEEEEEECCSS
T ss_pred             CCCCeEEEEEEeCCc
Confidence            888899999999764

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.68  E-value=2.8e-08  Score=103.47  Aligned_cols=120  Identities=22%  Similarity=0.355  Sum_probs=82.4

Q ss_pred             ccccCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCceE------EE---------eccCCceeEEE
Q psy9827          10 TFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDPRF------IT---------FQKEGSVGIRL   66 (627)
Q Consensus        10 ~~~~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~r~------v~---------l~k~g~lG~~i   66 (627)
                      .+.+++ ++|.++|+       |++|||+ ++...     .+++|++|....      +.         -...+.+|+.+
T Consensus       160 ~~i~~d~~~~~G~SGGPl~~~~G~vVGI~-s~~~~-----~g~~~aip~~~i~~~l~~~~~~~~~~g~~~~~r~~lGv~~  233 (325)
T 1lcy_A          160 EYIQTDAAIDFGNAGGPLVNLDGEVIGVN-TMKVT-----AGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMM  233 (325)
T ss_dssp             CCEEESSCCSTTTTTSEEEETTSCEEEEE-EEEEE-----TTEEEEEEHHHHHHHTCC---------------EECCEEE
T ss_pred             CEEEEcCCCCCCCccccEECCCCEEEEEE-eEeec-----CCeeEEEEHHHHHHHHHHhhhcccccccccccccccceEe
Confidence            344554 78888774       7788999 65442     245666663211      10         01224688887


Q ss_pred             EccC-----------------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          67 TGGN-----------------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        67 ~g~~-----------------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      ....                 ..|++|..|.++|||+++||++||+|++|||..+.++.+  ....+.. ++.+.|++.|
T Consensus       234 ~~l~~~~~~~~~l~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~--l~~~l~~-~~~v~l~v~R  310 (325)
T 1lcy_A          234 LTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAED--VYEAVRT-QSQLAVQIRR  310 (325)
T ss_dssp             EECCHHHHHHHTTSCTTSCCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH--HHHHHTT-CSSEEEEEEE
T ss_pred             ecCCHHHHHhhCccccccccCCCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCHHH--HHHHHhC-CCeEEEEEEE
Confidence            7531                 258999999999999999999999999999999987644  3334443 6899999999


Q ss_pred             CCcccceee
Q psy9827         130 RRDEYEHVV  138 (627)
Q Consensus       130 ~~~~~~~~v  138 (627)
                      ++......+
T Consensus       311 ~g~~~~~~v  319 (325)
T 1lcy_A          311 GRETLTLYV  319 (325)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            876554443

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.68  E-value=1.8e-07  Score=80.69  Aligned_cols=83  Identities=22%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             CccEEEEEeecC-CCCCeeeeeC----------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHH
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILG----------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARK  265 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~----------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~  265 (627)
                      ...+.|.|.|.. .+.||.+..+          .+++|..|.++    ++|. ++|++||+|++|||+++.+++..++..
T Consensus         6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~----spA~-agl~~GD~I~~vng~~v~~~~~~~~~~   80 (107)
T 2h2b_A            6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKG----GPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQ   80 (107)
T ss_dssp             EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTT----STTB-TTBCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCC----Cchh-hCCCCCCEEEEECCEECCCccHHHHHH
Confidence            356778888874 4455555532          28999999887    3455 899999999999999999988888888


Q ss_pred             HHHcCCCeEEEEEEeCCCC
Q psy9827         266 LIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       266 ~l~~~~~~v~l~V~r~~~~  284 (627)
                      .+...+..+.|.|.|++..
T Consensus        81 ~~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           81 QLRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             HHHTCCSEEEEEEEEESCC
T ss_pred             HhhCCCCEEEEEEEECCCC
Confidence            8888888999999997653

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.67  E-value=2.6e-08  Score=99.92  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             CccEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      .....|.|.|.. .+.||.+.++    .|++|..|.+|   ++|++.++|++||+|++|||+++.++++++++.+|+..+
T Consensus        76 ~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~g---spA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g  152 (263)
T 1z87_A           76 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKG---LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG  152 (263)
T ss_dssp             CSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTT---SHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCC
T ss_pred             CccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCC---CHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCC
Confidence            356788888863 4556666554    38999999987   334444899999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCCCC
Q psy9827         272 EKLSLTIRREVPRP  285 (627)
Q Consensus       272 ~~v~l~V~r~~~~~  285 (627)
                      +.++|+|.|.....
T Consensus       153 ~~V~L~V~R~~~~~  166 (263)
T 1z87_A          153 KEVVLEVKYMKEVS  166 (263)
T ss_dssp             SCCCEEEECCSSSS
T ss_pred             CeEEEEEEeCcccc
Confidence            99999999976543

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.66  E-value=4.4e-08  Score=85.91  Aligned_cols=84  Identities=25%  Similarity=0.356  Sum_probs=67.5

Q ss_pred             ccEEEEEeecCCCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ..+.|.|.+...+.+|.+..+     .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++..+
T Consensus        17 ~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   92 (116)
T 2dm8_A           17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEE----GAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP   92 (116)
T ss_dssp             SCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSS----SHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC
T ss_pred             CEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCC----ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            346778877765555555543     38999999887    3555566 9999999999999999989999999999888


Q ss_pred             CeEEEEEEeCCCCC
Q psy9827         272 EKLSLTIRREVPRP  285 (627)
Q Consensus       272 ~~v~l~V~r~~~~~  285 (627)
                      ..+.|+|.|++...
T Consensus        93 ~~v~l~v~R~~~~~  106 (116)
T 2dm8_A           93 QKVRLVVYRDEAHY  106 (116)
T ss_dssp             SEEEEEEECCSSCC
T ss_pred             CeEEEEEEeCCccc
Confidence            99999999976543

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.66  E-value=9.7e-08  Score=82.78  Aligned_cols=61  Identities=13%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      |++|..|.++    ++|..+||++||+|++|||+++.+++++++..+++..+..+.|+|.|....
T Consensus        46 gv~V~~V~~~----spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~  106 (109)
T 1q3o_A           46 LQYLESVDEG----GVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH  106 (109)
T ss_dssp             SEEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             CEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECCCC
Confidence            6899999886    456667899999999999999999999999999998888999999886543

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.66  E-value=4.1e-08  Score=81.53  Aligned_cols=73  Identities=16%  Similarity=0.202  Sum_probs=55.2

Q ss_pred             ceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827          61 SVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE  133 (627)
Q Consensus        61 ~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~  133 (627)
                      .+|+.....+  -.|+.|..+.|+|||+++||++||+|++|||.++.++.+..........++.+.|++.|++..
T Consensus         6 ~~~~~p~~~~g~~~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~   80 (87)
T 2i6v_A            6 YVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             TEEEEEEEETTEEEEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             ccceEEEeeCCeEEEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            4555544322  247888999999999999999999999999999998866553332234678999999987654

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=8e-08  Score=81.92  Aligned_cols=83  Identities=25%  Similarity=0.341  Sum_probs=64.9

Q ss_pred             ccEEEEEeecCCC-CCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         198 QTLRVQLSKSRKK-DDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       198 ~~~~V~L~k~~~~-~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ....|.|.+...+ .||.+...    .|++|..|.++    ++|..+||++||+|++|||+++.++++.++...++. +.
T Consensus        10 ~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~   84 (100)
T 2eeh_A           10 IIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEG----SSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SS   84 (100)
T ss_dssp             EECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTT----SHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CS
T ss_pred             eEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CC
Confidence            4456777765432 34444433    48999999886    456667899999999999999998889999999987 78


Q ss_pred             eEEEEEEeCCCCC
Q psy9827         273 KLSLTIRREVPRP  285 (627)
Q Consensus       273 ~v~l~V~r~~~~~  285 (627)
                      .+.|+|.|++..+
T Consensus        85 ~v~l~v~R~g~~p   97 (100)
T 2eeh_A           85 RLHMMVRRMGSGP   97 (100)
T ss_dssp             SEEEEEEECSCCC
T ss_pred             EEEEEEEECCcCC
Confidence            9999999987654

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.65  E-value=1.1e-07  Score=83.02  Aligned_cols=65  Identities=28%  Similarity=0.470  Sum_probs=52.6

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      ..|++|..|.++|||+++||++||+|++|||.++.++  .+....+.. ++.+.|++.|++......+
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~-~~~v~l~v~R~g~~~~~~v   98 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRETLTLYV   98 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH-CSSEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEECCEEEEEEE
Confidence            3689999999999999999999999999999999865  334444444 6899999999776554443

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.65  E-value=1.3e-07  Score=79.91  Aligned_cols=82  Identities=20%  Similarity=0.376  Sum_probs=65.2

Q ss_pred             CCccEEEEEeecCCCCCeeeee---CCcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~---~~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ....+.+.|.+.. ..++|+..   ..|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++..+
T Consensus         6 ~~~~~~v~l~~~~-~~glG~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~   80 (96)
T 2qkv_A            6 SLEKFNVDLMKKA-GKELGLSLSPNEIGCTIADLIQG----QYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN   80 (96)
T ss_dssp             CCCCEEEEEECBT-TBCCCEEEEECSSSEEEEEECTT----SCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             HCceEEEEEEeCC-CCCccEEEEeCCCcEEEEEeCCC----ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            3456778887642 23455543   368999999887    3555667 9999999999999999999999999999988


Q ss_pred             CeEEEEEEeCC
Q psy9827         272 EKLSLTIRREV  282 (627)
Q Consensus       272 ~~v~l~V~r~~  282 (627)
                      +.+.|+|.|..
T Consensus        81 ~~v~l~v~R~~   91 (96)
T 2qkv_A           81 GKVSMEVTRPK   91 (96)
T ss_dssp             SEEEEEEECCC
T ss_pred             CcEEEEEEeCC
Confidence            99999999853

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.65  E-value=7.1e-08  Score=83.28  Aligned_cols=80  Identities=20%  Similarity=0.274  Sum_probs=63.0

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC--CCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ--LAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~--L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ....|.|.+.. .+.+|.+..+    .+++|..|.++    ++|..+|  |++||+|++|||+++.++++.++..+++..
T Consensus        17 ~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~----spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~   92 (107)
T 3nfk_A           17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPG----TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   92 (107)
T ss_dssp             CCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTT----SHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCG
T ss_pred             CEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCC----CchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            45667777764 4445555443    37999999887    4555666  999999999999999999999999999987


Q ss_pred             CC----eEEEEEEeC
Q psy9827         271 KE----KLSLTIRRE  281 (627)
Q Consensus       271 ~~----~v~l~V~r~  281 (627)
                      ..    .+.|+|.|+
T Consensus        93 ~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           93 CERHSGELMLLVRPN  107 (107)
T ss_dssp             GGSBTTBEEEEEECC
T ss_pred             cccCCcEEEEEEEcC
Confidence            64    899999874

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.65  E-value=6.3e-08  Score=82.18  Aligned_cols=81  Identities=15%  Similarity=0.221  Sum_probs=62.7

Q ss_pred             ccEEEEEeecCCCCCeeeeeCC---cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC-e
Q psy9827         198 QTLRVQLSKSRKKDDFGIILGN---KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-K  273 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~~---gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~-~  273 (627)
                      .+..+.+.+...+.||.+..+.   +++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|+...+ .
T Consensus         9 ~~~~~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~   84 (98)
T 2jxo_A            9 RPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPD----SPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET   84 (98)
T ss_dssp             CCEEEEEECTTTCCCEEEECCCSSSCEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CcEEEEEEeCCCcccEEEEecCCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            4566778776555455444443   8999999886    456667899999999999999998889999999998765 4


Q ss_pred             EEEEEEeCC
Q psy9827         274 LSLTIRREV  282 (627)
Q Consensus       274 v~l~V~r~~  282 (627)
                      +.|+|.|++
T Consensus        85 ~~l~v~R~g   93 (98)
T 2jxo_A           85 KLLVVDRET   93 (98)
T ss_dssp             EEEECCHHH
T ss_pred             EEEEEECCc
Confidence            558887753

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.64  E-value=1.3e-07  Score=83.74  Aligned_cols=83  Identities=28%  Similarity=0.356  Sum_probs=65.0

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      ....+.+.+.+...+.+|.+...       .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++..++
T Consensus        28 ~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~g----spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l  103 (121)
T 2kom_A           28 IGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPR----GAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL  103 (121)
T ss_dssp             SCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTT----SHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHH
T ss_pred             CCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence            34566777777655555554443       47999999887    3555566 999999999999999988899999999


Q ss_pred             HcC--CCeEEEEEEeCC
Q psy9827         268 DSS--KEKLSLTIRREV  282 (627)
Q Consensus       268 ~~~--~~~v~l~V~r~~  282 (627)
                      +..  +..+.|+|.|++
T Consensus       104 ~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A          104 RSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             HHCCSSCEEEEEEEECC
T ss_pred             hcCCCCCEEEEEEEeCC
Confidence            975  678999999864

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.3e-08  Score=90.75  Aligned_cols=62  Identities=26%  Similarity=0.380  Sum_probs=54.5

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      .+++|..|.++    ++|..++|++||+|++|||+++.+++++++..+|+..+..+.|+|.|....
T Consensus        61 ~gv~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  122 (126)
T 2yuy_A           61 DTIFVKQVKEG----GPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSG  122 (126)
T ss_dssp             CCCCBCCCCSS----SHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCCC
T ss_pred             CCEEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            35899999876    455567799999999999999999999999999999888999999987654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.63  E-value=5.5e-08  Score=85.50  Aligned_cols=81  Identities=17%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC----------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG----------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~----------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      ..+.|.|.+.. .+.||.+..+          .|++|..|.+++    +|. ++|++||+|++|||+++.++++.+++.+
T Consensus        14 ~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~s----pA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~   88 (117)
T 2csj_A           14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGG----PAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQ   88 (117)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTS----SHH-HHBCTTCEEEEESSCBCBTCCHHHHHHH
T ss_pred             eEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCC----ccc-ccCCCCCEEEEECCEECCCcCHHHHHHH
Confidence            45677788764 4555555543          269999999874    333 8999999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCCC
Q psy9827         267 IDSSKEKLSLTIRREVP  283 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~~  283 (627)
                      ++..+..+.|+|.|...
T Consensus        89 l~~~~~~v~l~v~R~~~  105 (117)
T 2csj_A           89 LRKSGKIAAIVVKRPRK  105 (117)
T ss_dssp             HHHSCSEEEEEEEEEEE
T ss_pred             HhcCCCeEEEEEEECCc
Confidence            99988999999999654

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.63  E-value=1e-07  Score=83.99  Aligned_cols=83  Identities=16%  Similarity=0.267  Sum_probs=68.2

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ......|.|.+...+.||.+..+   .|++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++..+
T Consensus        12 ~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   87 (119)
T 1tp5_A           12 PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAG----GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   87 (119)
T ss_dssp             CCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTT----SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCccEEEEEEECCCCccEEEecCCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            44667888988766655555554   48999999887    3555667 9999999999999999999999999999888


Q ss_pred             CeEEEEEEeCC
Q psy9827         272 EKLSLTIRREV  282 (627)
Q Consensus       272 ~~v~l~V~r~~  282 (627)
                      ..+.|.|.|+.
T Consensus        88 ~~v~l~v~r~~   98 (119)
T 1tp5_A           88 QTVTIIAQYKP   98 (119)
T ss_dssp             SEEEEEEEECH
T ss_pred             CeEEEEEEECC
Confidence            99999999854

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.63  E-value=7.4e-08  Score=81.38  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=63.7

Q ss_pred             cEEEEEeecCCCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         199 TLRVQLSKSRKKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      .+.+.+.+...+.||.+...        .+++|..|.++    ++|..+| |++||+|++|||+++.++++.++..+++.
T Consensus         5 ~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~----s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (97)
T 2iwn_A            5 TFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKS----SAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH   80 (97)
T ss_dssp             EEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTT----CHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred             EEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCC----ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45666766655555555443        37999999887    3455566 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEeCC
Q psy9827         270 SKEKLSLTIRREV  282 (627)
Q Consensus       270 ~~~~v~l~V~r~~  282 (627)
                      .+..+.|+|.|++
T Consensus        81 ~~~~v~l~v~r~g   93 (97)
T 2iwn_A           81 TGQTVLLTLMRRG   93 (97)
T ss_dssp             CCSEEEEEEEEEE
T ss_pred             CCCeEEEEEEeCC
Confidence            8889999998865

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.62  E-value=1.7e-07  Score=80.16  Aligned_cols=61  Identities=18%  Similarity=0.343  Sum_probs=52.4

Q ss_pred             CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+..++.+.|+|.|...
T Consensus        39 ~g~~V~~V~~~----spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           39 RGIFIKHVLED----SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             --EEEEEECSS----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCEEEEEeCCC----CcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence            37999999887    4555677 9999999999999999888999999999988899999998654

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.62  E-value=1e-07  Score=80.27  Aligned_cols=61  Identities=30%  Similarity=0.428  Sum_probs=54.4

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      +++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..+..+.|.|.|++..
T Consensus        31 g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~   91 (94)
T 1vb7_A           31 PIIVTKVTER----GKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP   91 (94)
T ss_dssp             EEECCCBCTT----SSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCC
T ss_pred             CeEEEEECCC----CHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCcC
Confidence            7999999876    456678899999999999999999889999999998879999999997654

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.60  E-value=8.5e-08  Score=81.84  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=54.0

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~  139 (627)
                      ..|++|..|.++|||++ ||++||+|++|||.++.++.+..........++.+.|++.|++......+.
T Consensus         6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   73 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIK   73 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence            46899999999999995 999999999999999988755443333234689999999998766554443

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=7.5e-08  Score=80.69  Aligned_cols=79  Identities=16%  Similarity=0.321  Sum_probs=61.1

Q ss_pred             cEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         199 TLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      ...|.|.|. .+.+||+.+.   .+++|..|.+++   +|++.++|++||+|++|||+++ +++++++..+|+..++.+.
T Consensus         7 ~r~v~l~k~-~~~~lG~~i~~~~~~v~V~~V~~~s---pA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~   81 (91)
T 2e7k_A            7 GRMVGIRKT-AGEHLGVTFRVEGGELVIARILHGG---MVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVI   81 (91)
T ss_dssp             SCBCCBCCC-TTCCCCEEEEESSSSEEEEEECSSS---HHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBC
T ss_pred             cEEEEEEEC-CCCcEeEEEEecCCCEEEEEECCCC---HHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEE
Confidence            344566553 2345555553   689999999873   3444467999999999999999 7799999999998888999


Q ss_pred             EEEEeCC
Q psy9827         276 LTIRREV  282 (627)
Q Consensus       276 l~V~r~~  282 (627)
                      |+|.|..
T Consensus        82 l~v~~~~   88 (91)
T 2e7k_A           82 LKILSGP   88 (91)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9998854

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.60  E-value=8.6e-08  Score=82.20  Aligned_cols=82  Identities=21%  Similarity=0.300  Sum_probs=65.1

Q ss_pred             ccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCe
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK  273 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~  273 (627)
                      ..+.|.|. +..+++|.+..+    .+++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..+..
T Consensus         5 ~~~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   79 (103)
T 1wf7_A            5 SSGSVSLV-GPAPWGFRLQGGKDFNMPLTISSLKDG----GKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS   79 (103)
T ss_dssp             CCEEEEEE-SSSCCSCCEEEETTTTEEEEECCCCTT----CHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSE
T ss_pred             CEEEEEEe-CCCccCEEEeccccCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            34566676 344556666554    26899999876    4666778999999999999999999999999999988889


Q ss_pred             EEEEEEeCCCC
Q psy9827         274 LSLTIRREVPR  284 (627)
Q Consensus       274 v~l~V~r~~~~  284 (627)
                      +.|+|.|++..
T Consensus        80 v~l~v~R~g~~   90 (103)
T 1wf7_A           80 LNMTLQRASAA   90 (103)
T ss_dssp             EEEEECCCSCC
T ss_pred             EEEEEEeCCCc
Confidence            99999987653

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.58  E-value=1.1e-07  Score=84.98  Aligned_cols=85  Identities=15%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             CCccEEEEEee-cCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         196 EPQTLRVQLSK-SRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       196 ~~~~~~V~L~k-~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      ....+.|.|.+ ...+.||.+..+         .+++|..|.++    ++|..+| |++||+|++|||+++.+++++++.
T Consensus        13 ~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~   88 (129)
T 2dmz_A           13 LFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPG----SAAYHNGHIQVNDKIVAVDGVNIQGFANHDVV   88 (129)
T ss_dssp             CEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTT----SHHHHHTCCCSSCBEEEETTBCCTTCCHHHHH
T ss_pred             CCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            34567788865 344455555441         47999999887    3455566 999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEeCCCC
Q psy9827         265 KLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~~~~  284 (627)
                      .+|+..+..+.|.|.|++..
T Consensus        89 ~~l~~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           89 EVLRNAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             HHHHHCCSSEEEEEEEESSS
T ss_pred             HHHHcCCCeEEEEEEeCCcc
Confidence            99999888999999997653

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.58  E-value=1.8e-07  Score=90.03  Aligned_cols=80  Identities=23%  Similarity=0.431  Sum_probs=67.5

Q ss_pred             eEEEeccC--CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          52 RFITFQKE--GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        52 r~v~l~k~--g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      ..+.+.+.  ..|||++....    ..|++|..|.++|||+++| |++||+|++|||.++.++++.++...+...+..+.
T Consensus       109 ~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~  188 (196)
T 1p1d_A          109 FHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVK  188 (196)
T ss_dssp             EEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEE
T ss_pred             EEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEE
Confidence            34445432  37999998753    3589999999999999999 99999999999999999889999888887799999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|+.
T Consensus       189 l~v~R~~  195 (196)
T 1p1d_A          189 LKIRKDE  195 (196)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9999754

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.58  E-value=1.8e-07  Score=83.19  Aligned_cols=80  Identities=19%  Similarity=0.262  Sum_probs=63.2

Q ss_pred             cEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         199 TLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       199 ~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      +..|.+.+.. .+.||.+..+    .+++|..|.+|    ++|..+| |++||+|++|||+++.+++++++..+++..++
T Consensus        20 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~g----spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~   95 (125)
T 3hpk_A           20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDN----TPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG   95 (125)
T ss_dssp             EEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCC----CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4566777653 2344544443    36999999887    3455566 99999999999999999999999999999988


Q ss_pred             eEEEEEEeCC
Q psy9827         273 KLSLTIRREV  282 (627)
Q Consensus       273 ~v~l~V~r~~  282 (627)
                      .++|+|.|..
T Consensus        96 ~v~l~v~r~~  105 (125)
T 3hpk_A           96 EVTIHYNKLQ  105 (125)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEECC
Confidence            9999998843

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.58  E-value=1.1e-07  Score=82.94  Aligned_cols=65  Identities=28%  Similarity=0.414  Sum_probs=52.1

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      ..|++|..|.++|||+++||++||+|++|||.++.++....  ..+ ..++.+.|++.|++......+
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--~~l-~~g~~v~l~v~R~g~~~~~~v   98 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQ--EAV-LTESPLLLEVRRGNDDLLFSI   98 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHH--HHH-HHCSSEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHH--HHH-hCCCeEEEEEEECCEEEEEEE
Confidence            36899999999999999999999999999999998764433  333 357899999998775544433

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.58  E-value=1e-07  Score=83.08  Aligned_cols=84  Identities=17%  Similarity=0.254  Sum_probs=67.9

Q ss_pred             CCCccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         195 PEPQTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ..+..+.|.|.+...+.+|.+..+   .+++|..|.++    ++|..++ |++||+|++|||+++.++++.++..+++..
T Consensus        12 ~~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~----s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~   87 (113)
T 1um7_A           12 DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAG----GPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA   87 (113)
T ss_dssp             CCCSEEEEEEECCSSCSSBCCBCCSTTCCCBCCCBCSS----SHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSC
T ss_pred             CCCceEEEEEEECCCcccEEEEeccCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            345678888988755555555444   48999999876    4555667 999999999999999999999999999988


Q ss_pred             CCeEEEEEEeCC
Q psy9827         271 KEKLSLTIRREV  282 (627)
Q Consensus       271 ~~~v~l~V~r~~  282 (627)
                      +..+.|.|.|+.
T Consensus        88 ~~~v~l~v~r~~   99 (113)
T 1um7_A           88 GQSVTIVAQYRP   99 (113)
T ss_dssp             CSEEEEEEECCH
T ss_pred             CCcEEEEEEECc
Confidence            889999998864

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.57  E-value=2e-07  Score=82.97  Aligned_cols=80  Identities=18%  Similarity=0.316  Sum_probs=64.6

Q ss_pred             ccEEEEEeecCCCCCeeeee-CCcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCe
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL-GNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEK  273 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~-~~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~  273 (627)
                      ..+.+.|.+...+.||.+.. ..+++|..|.++    ++|..+| |++||+|++|||+++.++++++++.+|+.  .+..
T Consensus        27 ~~~~~~l~k~~~glG~~i~~~~~~v~V~~V~~g----spA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~  102 (126)
T 1wif_A           27 KVIQTKLTVGNLGLGLVVIQNGPYLQISHLINK----GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV  102 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEEETTEEEECCCCTT----SSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCE
T ss_pred             ceEEEEEecCCceEeEEEEcCCCcEEEEEECCC----CHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCE
Confidence            45677788776655555554 357999999887    3555566 99999999999999998899999999997  4578


Q ss_pred             EEEEEEeC
Q psy9827         274 LSLTIRRE  281 (627)
Q Consensus       274 v~l~V~r~  281 (627)
                      ++|+|.|+
T Consensus       103 v~l~V~R~  110 (126)
T 1wif_A          103 LQIKAYRG  110 (126)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEEC
Confidence            99999997

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.56  E-value=1.6e-07  Score=83.25  Aligned_cols=84  Identities=21%  Similarity=0.290  Sum_probs=65.9

Q ss_pred             CccEEEEEeecC-CCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      +..+.|.|.+.. .+.+|.+..+        .+++|..|.++    ++|..++ |++||+|++|||+++.+++++++..+
T Consensus        14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~----spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~   89 (122)
T 1v5q_A           14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEAD----SPAERCGVLQIGDRVMAINGIPTEDSTFEEANQL   89 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTT----SHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            355678887763 4445555432        36899999876    4556677 99999999999999998889999999


Q ss_pred             HHcC--CCeEEEEEEeCCCC
Q psy9827         267 IDSS--KEKLSLTIRREVPR  284 (627)
Q Consensus       267 l~~~--~~~v~l~V~r~~~~  284 (627)
                      |+..  +..+.|+|.|+...
T Consensus        90 l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           90 LRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             HHHHTTTTCEEEEEEEECCC
T ss_pred             HHhCCCCCeEEEEEEECCcc
Confidence            9975  57999999997654

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.56  E-value=2.1e-07  Score=81.41  Aligned_cols=82  Identities=17%  Similarity=0.237  Sum_probs=65.6

Q ss_pred             ccEEEEEeec-CCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCe
Q psy9827         198 QTLRVQLSKS-RKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK  273 (627)
Q Consensus       198 ~~~~V~L~k~-~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~  273 (627)
                      .+..+.+.+. ....+|++...   .|++|..|.++    ++|..+||++||+|++|||+++.++++.++..+++..+..
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   88 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEG----SPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS   88 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTT----CTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSE
T ss_pred             CCEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            4556666654 23455555543   58999999886    4666788999999999999999998899999999988889


Q ss_pred             EEEEEEeCCC
Q psy9827         274 LSLTIRREVP  283 (627)
Q Consensus       274 v~l~V~r~~~  283 (627)
                      +.|+|.|++.
T Consensus        89 v~l~v~R~~~   98 (114)
T 2edz_A           89 VTLLVLDGDS   98 (114)
T ss_dssp             EEEEEECHHH
T ss_pred             EEEEEEECCc
Confidence            9999998653

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.56  E-value=2e-08  Score=84.31  Aligned_cols=64  Identities=20%  Similarity=0.397  Sum_probs=52.5

Q ss_pred             CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeeEEEEEeCCcccceeee
Q psy9827          73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~V~L~v~r~~~~~~~~v~  139 (627)
                      |++|..|.++|||++ ||++||+|++|||.++.++.  +....+..  .++.+.|+|.|++......+.
T Consensus         2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   67 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSAE--KLIDYISSKKAGDKVTLKIEREEKEKRVTLT   67 (91)
T ss_dssp             CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSHH--HHHHHHSSCCSSCEECEEEESSSCEECCCEE
T ss_pred             ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCHH--HHHHHHHcCCCCCEEEEEEEECCEEEEEEEE
Confidence            688999999999999 99999999999999998764  44445553  589999999998876655544

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.55  E-value=7.7e-08  Score=81.16  Aligned_cols=68  Identities=19%  Similarity=0.308  Sum_probs=54.0

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~  139 (627)
                      ..|++|..|.++|||++ ||++||+|++|||.++.++.+..........++.+.|++.|++......+.
T Consensus         4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   71 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELV   71 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEEC
T ss_pred             CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence            45899999999999999 999999999999999987654433322224689999999998776655543

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.55  E-value=1.9e-07  Score=82.17  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             CCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC----CCeEEEEEE
Q psy9827         209 KKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS----KEKLSLTIR  279 (627)
Q Consensus       209 ~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~----~~~v~l~V~  279 (627)
                      .+.||.+.++     ..++|.+|.++   ++|++.++|++||+|++|||+++.++++++++.+|+..    +..++|+|.
T Consensus        28 ~glG~~i~gg~~~~~~~i~I~~V~~g---spA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~  104 (118)
T 1v6b_A           28 GSLDLALEGGVDSPVGKVVVSAVYEG---GAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA  104 (118)
T ss_dssp             SCCCCEEEEBTTSSSCSEEEEECCTT---SHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             CccCEEEEcccCCCCCCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEE
Confidence            3555555543     24999999987   33444459999999999999999999999999999864    679999999


Q ss_pred             eCC
Q psy9827         280 REV  282 (627)
Q Consensus       280 r~~  282 (627)
                      |..
T Consensus       105 r~~  107 (118)
T 1v6b_A          105 VCP  107 (118)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            854

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.54  E-value=2.9e-07  Score=79.25  Aligned_cols=74  Identities=16%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             ceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccc
Q psy9827          61 SVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY  134 (627)
Q Consensus        61 ~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~  134 (627)
                      .+|+.....+  -.|+.|..+.|+|||+++||++||+|++|||.++.++.+..........++.+.|+|.|++...
T Consensus        24 ~~g~~~~~~~~~~~G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~   99 (105)
T 2i4s_A           24 YVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQH   99 (105)
T ss_dssp             HEEEEEEEETTEEEEEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEETTEEE
T ss_pred             hceeEEEecCCcEEEEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence            4666554321  2367788888888999999999999999999999999887654443467889999999876543

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.54  E-value=3.6e-07  Score=81.09  Aligned_cols=61  Identities=18%  Similarity=0.343  Sum_probs=53.6

Q ss_pred             CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+| |++||+|++|||+++.+++++++..+|+..++.+.|+|.|...
T Consensus        59 ~gv~V~~V~~~----spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A           59 RGIFIKHVLED----SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             CSEEEEEECSS----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred             CCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            37999999887    4555677 9999999999999999888999999999988899999998653

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.54  E-value=3e-07  Score=80.70  Aligned_cols=83  Identities=20%  Similarity=0.278  Sum_probs=66.3

Q ss_pred             ccEEEEEeecCCCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      ....|.+.+.....+|.+..+  .|++|..|.++    ++|..+||++||+|++|||+++.+++..++...+...+..+.
T Consensus        19 ~~~~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~~----spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~   94 (117)
T 1uit_A           19 EPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVG----SIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT   94 (117)
T ss_dssp             CCEEEEEECSSCCCCEEEEECTTSCEEEEEECTT----SHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred             CCEEEEEEeCCCCccEEEEccCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            345788887765555655554  58999999887    455567899999999999999999888888877777788999


Q ss_pred             EEEEeCCCC
Q psy9827         276 LTIRREVPR  284 (627)
Q Consensus       276 l~V~r~~~~  284 (627)
                      |+|.|++..
T Consensus        95 l~v~r~~~~  103 (117)
T 1uit_A           95 ILAQYNPHV  103 (117)
T ss_dssp             EEECCCSCC
T ss_pred             EEEEECCch
Confidence            999997654

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.51  E-value=2.4e-07  Score=78.22  Aligned_cols=59  Identities=14%  Similarity=0.112  Sum_probs=48.0

Q ss_pred             EEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827          74 IFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus        74 i~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      .+|..|.++|||+++||++||+|++|||..+.++.+..........+..+.|+|.|++.
T Consensus         4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            46889999999999999999999999999999886554433333344799999998764

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.51  E-value=2.6e-07  Score=88.64  Aligned_cols=82  Identities=17%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             CccEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      .....|.|.+.. .+.||.+..+    .+++|..|.+|    ++|..+||++||+|++|||.++.+++++++..+++. +
T Consensus        83 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~g----spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~  157 (192)
T 3k1r_A           83 RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKG----GQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-E  157 (192)
T ss_dssp             SSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTT----SHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-S
T ss_pred             CceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-C
Confidence            345678888763 3344444333    38999999887    355566799999999999999999999999999998 8


Q ss_pred             CeEEEEEEeCCC
Q psy9827         272 EKLSLTIRREVP  283 (627)
Q Consensus       272 ~~v~l~V~r~~~  283 (627)
                      ..+.|+|.|++.
T Consensus       158 ~~v~l~v~r~g~  169 (192)
T 3k1r_A          158 KTVSIKVRHIGL  169 (192)
T ss_dssp             SEEEEEEEECCE
T ss_pred             CeEEEEEEECCc
Confidence            899999999765

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.51  E-value=2.9e-07  Score=81.04  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=60.9

Q ss_pred             cEEEEEeec-CCCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         199 TLRVQLSKS-RKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       199 ~~~V~L~k~-~~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ...+.|.+. ..+.||.+..+     .|++|..|.++    ++|..+| |++||+|++|||+++.++++.+++.+++..+
T Consensus        16 ~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   91 (119)
T 1x6d_A           16 IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPN----GLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR   91 (119)
T ss_dssp             EEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSS----SHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred             eEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            345555553 33444544443     37999999887    3555566 9999999999999999999999999999876


Q ss_pred             Ce-EEEEEEeCCCC
Q psy9827         272 EK-LSLTIRREVPR  284 (627)
Q Consensus       272 ~~-v~l~V~r~~~~  284 (627)
                      +. +.+++.|+...
T Consensus        92 ~~~~~l~v~R~~~~  105 (119)
T 1x6d_A           92 EPRQAVIVTRKLTP  105 (119)
T ss_dssp             SSSEEEEEEECCCS
T ss_pred             CCeEEEEEEcCCCc
Confidence            64 55778886654

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.50  E-value=1.5e-07  Score=80.71  Aligned_cols=72  Identities=25%  Similarity=0.393  Sum_probs=59.5

Q ss_pred             CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         209 KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       209 ~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ...+|.+..+    .+++|..|.++    ++|..++|++||+|++|||+++.+++++++..+|+..+..+.|+|.|++..
T Consensus        15 ~~lG~~l~~g~~~~~~~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~   90 (103)
T 1v5l_A           15 APWGFRLSGGIDFNQPLVITRITPG----SKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR   90 (103)
T ss_dssp             SCCSBCCEEETTTTEEEECSCBCTT----STTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTT
T ss_pred             CCcCEEEeccccCCCCeEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCeE
Confidence            3455555544    27999999876    456668899999999999999998889999999998888999999997654

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.50  E-value=1.8e-08  Score=105.20  Aligned_cols=117  Identities=21%  Similarity=0.366  Sum_probs=21.4

Q ss_pred             cCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCceEE----------E----eccCCceeEEEEcc-
Q psy9827          13 KEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFI----------T----FQKEGSVGIRLTGG-   69 (627)
Q Consensus        13 ~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v----------~----l~k~g~lG~~i~g~-   69 (627)
                      +++ +++.++|+       |++|||+ ++...     .+++|++|.....          .    ..+.+.||+.+... 
T Consensus       162 ~~d~~i~~G~SGGPlv~~~G~vvGI~-s~~~~-----~g~~~aip~~~i~~~l~~~~~~~~~g~~~~~r~~lGi~~~~~~  235 (332)
T 3num_A          162 QTDAIINYGNAGGPLVNLDGEVIGIN-TLKVT-----AGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLT  235 (332)
T ss_dssp             EESSCCCTTTTTSEEEETTSCEEEEE-EEEEE-----TTEEEEEEHHHHHHHHHHHCC----------------------
T ss_pred             EEECCcCCCCcHHHhhCCCCcEEEEE-eeEec-----ccceEEECHHHHHHHHHHHhhhhccCcccccccccceEEEecC
Confidence            444 77777764       6778999 55443     3567777733111          0    01235688876532 


Q ss_pred             ----------------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827          70 ----------------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE  133 (627)
Q Consensus        70 ----------------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~  133 (627)
                                      ...|++|..|.++|||+++||++||+|++|||.++.++.+....  ++ .++.++|+|.|++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~--l~-~~~~v~l~v~R~g~~  312 (332)
T 3num_A          236 SSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDV--IK-RESTLNMVVRRGNED  312 (332)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhhhhhhhccccCCCCCceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHHHHHHH--Hh-CCCeEEEEEEECCEE
Confidence                            13589999999999999999999999999999999877654433  33 378899999987765


Q ss_pred             cceee
Q psy9827         134 YEHVV  138 (627)
Q Consensus       134 ~~~~v  138 (627)
                      ....+
T Consensus       313 ~~~~v  317 (332)
T 3num_A          313 IMITV  317 (332)
T ss_dssp             -----
T ss_pred             EEEEE
Confidence            54443

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.49  E-value=7.7e-08  Score=83.80  Aligned_cols=81  Identities=15%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             EEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC-eEEEEE
Q psy9827         200 LRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTI  278 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~-~v~l~V  278 (627)
                      ..|.|.+...+.+|.+....+++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|+...+ .+.|+|
T Consensus        17 r~v~l~~~~~~~G~~l~~~~~v~V~~V~~~----spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V   92 (111)
T 1vae_A           17 RGIHFTVEEGDLGFTLRGNTPVQVHFLDPH----CSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV   92 (111)
T ss_dssp             CCCCEECCSSCCSCCEESSSSCEECCCCTT----SSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEE
T ss_pred             eEEEEEcCCCcccEEEeCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEE
Confidence            346677765555555555678999999876    456667899999999999999999999999999998765 599999


Q ss_pred             EeCCCC
Q psy9827         279 RREVPR  284 (627)
Q Consensus       279 ~r~~~~  284 (627)
                      .+....
T Consensus        93 ~~~~~~   98 (111)
T 1vae_A           93 VSLLDS   98 (111)
T ss_dssp             ECEECC
T ss_pred             EecCCC
Confidence            885443

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.49  E-value=6.8e-07  Score=78.15  Aligned_cols=80  Identities=19%  Similarity=0.277  Sum_probs=63.2

Q ss_pred             ccEEEEEeecCCC-CCeeeeeC----CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKSRKK-DDFGIILG----NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~-~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ....|.|.+...+ .||.+..+    .+++|..|.++    ++|..+| |++||+|++|||.++.+.+++++..+++..+
T Consensus        24 ~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~g----spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   99 (114)
T 2gzv_A           24 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDN----TPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   99 (114)
T ss_dssp             CCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTT----SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCC----ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4567888876533 55555544    26999999887    3555667 9999999999999998889999999999888


Q ss_pred             CeEEEEEEeC
Q psy9827         272 EKLSLTIRRE  281 (627)
Q Consensus       272 ~~v~l~V~r~  281 (627)
                      +.+.|+|.+.
T Consensus       100 ~~v~l~v~~~  109 (114)
T 2gzv_A          100 GEVTIHYNKL  109 (114)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEec
Confidence            8888888663

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.48  E-value=1.2e-07  Score=101.30  Aligned_cols=98  Identities=20%  Similarity=0.314  Sum_probs=76.9

Q ss_pred             cCCCCCccccccCCCCceEEEeccC---CceeEEEEcc--CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCH
Q psy9827          35 QPGSPDLFSIFFVEPDPRFITFQKE---GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR  109 (627)
Q Consensus        35 ~~~~~d~~~~~~~~~~~r~v~l~k~---g~lG~~i~g~--~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~  109 (627)
                      ....+|+|+.++...+.+.+.....   +++|+.+...  .+.+++|..|.+||||+++||++||+|++|||.++.+++.
T Consensus        57 l~~L~D~hs~~~~~~~~~~~~~~~~g~~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~  136 (388)
T 1fc6_A           57 LAVLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSL  136 (388)
T ss_dssp             HHTTCCTTCEEECHHHHHHHHHCSSSSCBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCH
T ss_pred             HHhcCCCcceecCHHHHHHHHHhhcCceEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCH
Confidence            3666799998876544433221212   3799988754  2468999999999999999999999999999999999987


Q ss_pred             HHHHHHHh-cCCCeeEEEEEeCCc
Q psy9827         110 EEAVLFLL-SLQDQIHLIVQNRRD  132 (627)
Q Consensus       110 ~~~~~~l~-~~g~~V~L~v~r~~~  132 (627)
                      .++..+++ ..+..|+|+|.|.+.
T Consensus       137 ~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A          137 YDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             HHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             HHHHHHHhcCCCCEEEEEEEeCCC
Confidence            77777776 568899999998765

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.46  E-value=1.6e-07  Score=80.17  Aligned_cols=83  Identities=22%  Similarity=0.338  Sum_probs=61.6

Q ss_pred             ccEEEEEeecCCCCCeeeee--C----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL--G----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~--~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ....+.+.+.....+|||.+  .    .+++|..|.++    ++|..++|++||+|++|||+++.+++..+++..++. .
T Consensus         8 ~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~   82 (101)
T 1uez_A            8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPG----SLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKG-S   82 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTT----SHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSS-S
T ss_pred             ccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcC-C
Confidence            34556666644445566655  3    38999999876    456667899999999999999999888777666644 4


Q ss_pred             CeEEEEEEeCCCCC
Q psy9827         272 EKLSLTIRREVPRP  285 (627)
Q Consensus       272 ~~v~l~V~r~~~~~  285 (627)
                      ..+.|+|.|++..+
T Consensus        83 ~~v~l~v~R~g~~p   96 (101)
T 1uez_A           83 KKLVLSVYSAGRIS   96 (101)
T ss_dssp             SSCCEEECCCCCCS
T ss_pred             CeEEEEEEECCccC
Confidence            58899999876544

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.46  E-value=4.5e-07  Score=80.86  Aligned_cols=83  Identities=14%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             CCccEEEEEeecCCCCCeeeeeCC---cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILGN---KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~~---gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      .+.+..|.+.+...+.||.+....   +++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|+...+
T Consensus         7 ~~~~r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   82 (128)
T 2kjd_A            7 MLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPD----SPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (128)
T ss_dssp             TCCCEEEEEECCSSSCCEEEEECSSSCSEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred             CCCcEEEEEecCCCcccEEEEecCCCCCEEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            345677888887665555555543   8999999886    455667899999999999999998889999999998754


Q ss_pred             -eEEEEEEeCC
Q psy9827         273 -KLSLTIRREV  282 (627)
Q Consensus       273 -~v~l~V~r~~  282 (627)
                       .+.|+|.|++
T Consensus        83 ~~~~l~v~R~g   93 (128)
T 2kjd_A           83 ETKLLVVDRET   93 (128)
T ss_dssp             EEEEEEECHHH
T ss_pred             CEEEEEEEeCC
Confidence             5668888854

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.45  E-value=3.1e-07  Score=83.30  Aligned_cols=62  Identities=21%  Similarity=0.343  Sum_probs=53.0

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeCCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVPR  284 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~~~~  284 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|+.. +..+.|+|.|++..
T Consensus        64 ~gv~V~~V~~~----spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~  126 (139)
T 2vz5_A           64 KGIYVTRVSEG----GPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ  126 (139)
T ss_dssp             CCEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC--
T ss_pred             CCEEEEEECCC----CHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            58999999887    4566678999999999999999999999999999974 56899999997654

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.82  E-value=2.3e-08  Score=87.29  Aligned_cols=78  Identities=21%  Similarity=0.330  Sum_probs=59.1

Q ss_pred             cEEEEEeecCCCCCeeeee--C----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         199 TLRVQLSKSRKKDDFGIIL--G----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~--~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ...|.|.+.. ..+||+.+  +    .+++|..|.+++   +|+++++|++||+|++|||.++.+++++++..+++..++
T Consensus        28 ~~~v~l~k~~-~~glG~~l~~g~~~~~gv~V~~V~~~s---pA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~  103 (112)
T 2lob_A           28 IRKVLLLKED-HEGLGISITGGKEHGVPILISEIHPGQ---PADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG  103 (112)
Confidence            3456666643 23555554  3    379999999873   344448999999999999999998899999999998877


Q ss_pred             eEEEEEEe
Q psy9827         273 KLSLTIRR  280 (627)
Q Consensus       273 ~v~l~V~r  280 (627)
                      .++|+|.+
T Consensus       104 ~v~l~V~~  111 (112)
T 2lob_A          104 EIEFEVVY  111 (112)
Confidence            78887753

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.44  E-value=3.8e-07  Score=78.30  Aligned_cols=77  Identities=26%  Similarity=0.309  Sum_probs=60.0

Q ss_pred             ccEEEEEeecC-CCCCeeeee-----------CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIIL-----------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARK  265 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~-----------~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~  265 (627)
                      .+..+.+.+.. .+.||.+..           ..+++|..|.++    ++|..+||++||+|++|||+++.+++++++..
T Consensus        15 ~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~----spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~   90 (104)
T 2z17_A           15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQED----SPAHCAGLQAGDVLANINGVSTEGFTYKQVVD   90 (104)
T ss_dssp             CCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTT----SHHHHHTCCTTCBCCEETTEECTTCCHHHHHH
T ss_pred             cceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCC----ChHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Confidence            44566677653 344555554           138999999887    45556779999999999999999999999999


Q ss_pred             HHHcCCCeEEEEE
Q psy9827         266 LIDSSKEKLSLTI  278 (627)
Q Consensus       266 ~l~~~~~~v~l~V  278 (627)
                      +|+..++.++|+|
T Consensus        91 ~l~~~~~~v~l~v  103 (104)
T 2z17_A           91 LIRSSGNLLTIET  103 (104)
T ss_dssp             HHHHTTTEEEEEC
T ss_pred             HHHhCCCcEEEEE
Confidence            9999877887765

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.44  E-value=7.6e-07  Score=79.06  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=57.0

Q ss_pred             CCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         209 KKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       209 ~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      ...+|.+..+  .|++|..|.++    ++|..+||++||+|++|||+++.+++++++..+|..  .+..+.|+|.|+..
T Consensus        39 ~~lG~~l~~~~~~gv~V~~V~~g----spA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  113 (124)
T 3tsv_A           39 DSVGLRLAGGNDVGIFVAGVLED----SPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD  113 (124)
T ss_dssp             SCCCEEEEECTTSCEEEEEECTT----CHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred             CceeEEEecCCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence            3444444432  48999999887    466677899999999999999998888999998884  66799999998643

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.43  E-value=4.1e-07  Score=76.35  Aligned_cols=76  Identities=22%  Similarity=0.409  Sum_probs=56.4

Q ss_pred             cEEEEEeecCC---CCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         199 TLRVQLSKSRK---KDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       199 ~~~V~L~k~~~---~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ...|.+.|...   +.||.+...     .+++|..|.++    ++|..+||++||+|++|||+++.+++++++..++++ 
T Consensus         7 ~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~----spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~-   81 (94)
T 3kzd_A            7 THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKET----GLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ-   81 (94)
T ss_dssp             EEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTT----SHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS-
T ss_pred             eeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-
Confidence            45667777653   344544431     37999999886    466678999999999999999999999999999985 


Q ss_pred             CCeEEEEEEe
Q psy9827         271 KEKLSLTIRR  280 (627)
Q Consensus       271 ~~~v~l~V~r  280 (627)
                       ..++|+|..
T Consensus        82 -~~l~ltV~~   90 (94)
T 3kzd_A           82 -PSLGLLVRT   90 (94)
T ss_dssp             -SEEEEEEEE
T ss_pred             -CeEEEEEEe
Confidence             456666654

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.42  E-value=6.7e-07  Score=74.43  Aligned_cols=79  Identities=25%  Similarity=0.333  Sum_probs=59.9

Q ss_pred             EEEEEeecC-CCCCeeeee---CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCe
Q psy9827         200 LRVQLSKSR-KKDDFGIIL---GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEK  273 (627)
Q Consensus       200 ~~V~L~k~~-~~~~~gi~~---~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~  273 (627)
                      +.+.+.+.. ....+|+..   ..|++|..|.++    ++|..+||++||+|++|||+++.+.+++++..+++.  .+..
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~~~~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~   80 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKWDIPGIFVASVEAG----SPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGH   80 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEEETTEEEEEEECTT----SHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTE
T ss_pred             eEEEEEecCCCCCcccEEEEecCCCEEEEEECCC----ChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCE
Confidence            344444432 222455544   358999999876    466678899999999999999966699999999985  4679


Q ss_pred             EEEEEEeCC
Q psy9827         274 LSLTIRREV  282 (627)
Q Consensus       274 v~l~V~r~~  282 (627)
                      +.|+|.|++
T Consensus        81 v~l~v~R~g   89 (90)
T 2eaq_A           81 LVMDVRRYG   89 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeCC
Confidence            999999864

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.41  E-value=2.1e-06  Score=74.80  Aligned_cols=81  Identities=23%  Similarity=0.301  Sum_probs=61.3

Q ss_pred             CCccEEEEEeec-CCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         196 EPQTLRVQLSKS-RKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       196 ~~~~~~V~L~k~-~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      .....+|.+.+. ..+.+|.+..+    .|++|..|.++    ++|..++|++||+|++|||+++.++++.++..+++..
T Consensus        13 ~~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~----s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~   88 (114)
T 1x5n_A           13 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPG----SLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS   88 (114)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTT----STTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC
T ss_pred             CCCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            445567777554 33344444432    48999999887    3555678999999999999999998888899988876


Q ss_pred             CCeEEEEEEeC
Q psy9827         271 KEKLSLTIRRE  281 (627)
Q Consensus       271 ~~~v~l~V~r~  281 (627)
                       ..+.|.|.|+
T Consensus        89 -~~v~l~v~r~   98 (114)
T 1x5n_A           89 -RSLTISIVAA   98 (114)
T ss_dssp             -SSEEEEECSS
T ss_pred             -CeEEEEEEcC
Confidence             5899999886

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.41  E-value=9.4e-07  Score=76.79  Aligned_cols=81  Identities=19%  Similarity=0.281  Sum_probs=62.7

Q ss_pred             EEEEEeecC-CCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCC-CCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCe
Q psy9827         200 LRVQLSKSR-KKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQL-AEGDVLLKINNHPTDGMSVKEARKLIDSS-KEK  273 (627)
Q Consensus       200 ~~V~L~k~~-~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L-~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~  273 (627)
                      +.|.|.++. .+.||.+...   .+++|..|.++    ++|..+|| ++||+|++|||.++.+++++++..+++.. +..
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~----spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~   78 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRG----GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASET   78 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSSSSCEEEEEECTT----SHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSS
T ss_pred             EEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCC----ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCc
Confidence            567777753 3344444443   38999999887    45556677 99999999999999988899999999874 579


Q ss_pred             EEEEEEeCCCC
Q psy9827         274 LSLTIRREVPR  284 (627)
Q Consensus       274 v~l~V~r~~~~  284 (627)
                      +.|.|.|++..
T Consensus        79 v~l~v~R~g~~   89 (112)
T 1qau_A           79 HVVLILRGPEG   89 (112)
T ss_dssp             EEEEEEECCTT
T ss_pred             EEEEEEeCCcc
Confidence            99999997653

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.40  E-value=2.9e-07  Score=76.88  Aligned_cols=65  Identities=22%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .++|..|.++|||+++||++||+|++|||.++.++.+...... ...++.+.|++.|++......+
T Consensus         5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~-~~~g~~v~l~v~R~g~~~~~~v   69 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVR-DNPGXSLALEIERQGSPLSLTL   69 (91)
T ss_dssp             -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCHHHHHHHHH-HCTTCCEEEEEEETTEEEEEEE
T ss_pred             CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCHHHHHHHHh-cCCCCeEEEEEEECCeEEEEEE
Confidence            3578899999999999999999999999999987754333222 2467899999998775544433

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.40  E-value=9.3e-07  Score=84.97  Aligned_cols=146  Identities=14%  Similarity=0.132  Sum_probs=89.1

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhC-CCCccc--------C-------CCCCCCCHHHHHHHHhcccc-----cCCcee
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDF-PDKFSA--------P-------RKFNFILWATIKDTAMYQSS-----KEPGMY  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~-p~~f~~--------~-------~~~~Fvs~e~f~~~i~~~~~-----~~~~~Y  508 (627)
                      ....|+|+||+   |+|+.+.|.... |+ +..        +       ....|.+.+.|..++..+..     +.+++|
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTS-YKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCC-EECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCC-eEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            34689999999   999999998876 53 221        1       11147788888887655442     246666


Q ss_pred             -----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CCC--CHHHHHHHHHHHHHHHHHh
Q psy9827         509 -----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDI--KKEVKIKLFEQSQKLEKVW  574 (627)
Q Consensus       509 -----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~--~e~~~~~~~~~~~~~e~~~  574 (627)
                           .+++++++|+.||+|+. ... ..+  ..+|-.++||+.||+.+.+     .|.  ++++++++++.... +.++
T Consensus        84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~-~~~~  160 (207)
T 2j41_A           84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVR--KKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARK-EVEM  160 (207)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHH--HHCTTSEEEEEECCC---------------------------C-GGGG
T ss_pred             CCCHHHHHHHHHcCCeEEEEECHHHHHHHH--HhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhc
Confidence                 67888889999999998 322 221  2233222899998874332     232  23334444433321 2345


Q ss_pred             cCcccEEEECCCHHHHHHHHHHHHHhhC
Q psy9827         575 SHVFTGTITLSGVDVWYRKTRELIEKQQ  602 (627)
Q Consensus       575 ~~~fd~vi~n~~l~~~~~~l~~~i~~~~  602 (627)
                      ...+|++|+|+++++++++|.+++....
T Consensus       161 ~~~~d~vI~n~~~e~~~~~i~~~l~~~~  188 (207)
T 2j41_A          161 MNLYDYVVVNDEVELAKNRIQCIVEAEH  188 (207)
T ss_dssp             GGGCSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHHHhh
Confidence            5678999999999999999999998754

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=2.7e-07  Score=78.61  Aligned_cols=60  Identities=28%  Similarity=0.380  Sum_probs=51.4

Q ss_pred             cEEEEEeccCCCCCCCCCCC-CCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTH-QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~-~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      +++|..|.++    ++|..+ +|++||+|++|||+++.++ +.++..+++..+..+.|+|.|+...
T Consensus        36 ~v~V~~V~~~----spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~~   96 (100)
T 2edp_A           36 PLTVSKIEDG----GKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG   96 (100)
T ss_dssp             EEEECCCCTT----SHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCCS
T ss_pred             CeEEEEECCC----CHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            6899999887    344455 9999999999999999976 8889999998888999999997653

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=8.4e-07  Score=77.54  Aligned_cols=80  Identities=21%  Similarity=0.367  Sum_probs=61.8

Q ss_pred             ccEEEEEeecCC---CCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         198 QTLRVQLSKSRK---KDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       198 ~~~~V~L~k~~~---~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      ....+.|.|...   +.||.+...     .+++|..|.++    ++|..+||++||+|++|||+++.+++++++..+++.
T Consensus        15 ~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~----spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~   90 (114)
T 2d8i_A           15 VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKET----GLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ   90 (114)
T ss_dssp             EEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTT----SSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS
T ss_pred             ceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCC----CHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC
Confidence            345677777654   344444431     37999999876    466677899999999999999998889999999985


Q ss_pred             CCCeEEEEEEeCCC
Q psy9827         270 SKEKLSLTIRREVP  283 (627)
Q Consensus       270 ~~~~v~l~V~r~~~  283 (627)
                      .  .+.|+|.|...
T Consensus        91 ~--~v~l~v~R~p~  102 (114)
T 2d8i_A           91 P--SLGLLVRTYPE  102 (114)
T ss_dssp             S--EEEEEEEECCC
T ss_pred             C--cEEEEEEECCC
Confidence            3  89999998654

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.35  E-value=2.1e-06  Score=82.19  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=51.5

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  280 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r  280 (627)
                      .|++|..|.+++    +|.. +|++||+|++|||+++.++++.+++.+++..++.+.|.|.|
T Consensus        24 ~g~~V~~v~~~s----pA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A           24 DGIFVTRVQPEG----PASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             CSEEEEEECTTS----TTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCEEEEEECCCC----hHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            389999999873    4445 89999999999999999999999999999998899999999

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.35  E-value=9.8e-07  Score=75.57  Aligned_cols=59  Identities=22%  Similarity=0.370  Sum_probs=50.8

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRRE  281 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~  281 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.+++++++...++.. +..+.|.|.|.
T Consensus        45 ~gv~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           45 KGIYVTRVSEG----GPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             CSEEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CCEEEEEECCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            47999999887    4566677999999999999999998999999999864 46899999873

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.33  E-value=1.5e-06  Score=73.54  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=54.7

Q ss_pred             CCeeeee---CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc---CCCeEEEEEEe
Q psy9827         211 DDFGIIL---GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS---SKEKLSLTIRR  280 (627)
Q Consensus       211 ~~~gi~~---~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~---~~~~v~l~V~r  280 (627)
                      .+||+.+   ..+.+|..|.+|    ++|..+||++||+|++|||.++...+++|+...++.   .++.+.|.|..
T Consensus        28 ~g~G~~l~~~~~~~~I~~V~~g----SpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~   99 (101)
T 3qik_A           28 EDYGFDIEEKNKAVVVKSVQRG----SLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT   99 (101)
T ss_dssp             SSSSEEEEEETTEEEEEEECTT----SHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CcccEEEEccCCCeEEEEECCC----CHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence            4455554   257899999886    577788999999999999999977799999999987   58899998864

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.29  E-value=1.3e-06  Score=94.35  Aligned_cols=79  Identities=22%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             EEEEEeecCCCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEE
Q psy9827         200 LRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLS  275 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~  275 (627)
                      ..|.+.|+ .+.||.+.++  .|++|.+|.+|+    +|..+||++||+|++|||+++.++++++++.+|+.  .++.++
T Consensus         3 r~V~l~k~-~~lG~~i~gg~~~Gi~V~~V~~gs----pA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~   77 (468)
T 3shw_A            3 KLVKFRKG-DSVGLRLAGGNDVGIFVAGVLEDS----PAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVT   77 (468)
T ss_dssp             EEEEEECC-SSCCEEEEEETTTEEEEEEECSSS----HHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEE
T ss_pred             eEEEEecC-CccceEEEccCcCCEEEEEECCCC----HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEE
Confidence            45667765 4455555543  589999999873    45557799999999999999999999999999998  678999


Q ss_pred             EEEEeCCC
Q psy9827         276 LTIRREVP  283 (627)
Q Consensus       276 l~V~r~~~  283 (627)
                      |+|.|++.
T Consensus        78 L~V~r~g~   85 (468)
T 3shw_A           78 ILAQKKKD   85 (468)
T ss_dssp             EEEEECHH
T ss_pred             EEEEECCc
Confidence            99999643

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.28  E-value=1.5e-06  Score=77.41  Aligned_cols=84  Identities=19%  Similarity=0.304  Sum_probs=65.2

Q ss_pred             CccEEEEEeecC-CCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCC-CCCCEEEEeCceeCCCCCHHHHHHHHHcC-
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQL-AEGDVLLKINNHPTDGMSVKEARKLIDSS-  270 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L-~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-  270 (627)
                      ...+.|.+.++. .+.||.+...   .+++|..|.++    ++|..+|| ++||+|++|||+++.+++++++..+|+.. 
T Consensus         7 ~~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~----spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   82 (127)
T 1b8q_A            7 PNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRG----GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA   82 (127)
T ss_dssp             CCSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSS----SSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCC
T ss_pred             CceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCC----CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            356778888864 4444444443   38999999887    35555677 99999999999999988899999999975 


Q ss_pred             CCeEEEEEEeCCCC
Q psy9827         271 KEKLSLTIRREVPR  284 (627)
Q Consensus       271 ~~~v~l~V~r~~~~  284 (627)
                      +..+.|.|.|++..
T Consensus        83 g~~v~l~v~R~g~~   96 (127)
T 1b8q_A           83 SETHVVLILRGPEG   96 (127)
T ss_dssp             SSCEEEEEECCCCS
T ss_pred             CCeEEEEEEeCCce
Confidence            46899999997653

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.28  E-value=2.6e-06  Score=74.85  Aligned_cols=63  Identities=25%  Similarity=0.407  Sum_probs=54.4

Q ss_pred             CcEEEEEecc--CCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Q psy9827         219 NKIFVKEVTH--RLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  285 (627)
Q Consensus       219 ~gi~V~~V~~--g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~~  285 (627)
                      .+++|..|.+  +    ++|..+||++||+|++|||+++.+++++++..+|+..+..+.|+|.|++...
T Consensus        44 ~gv~V~~V~~~~~----spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~~  108 (118)
T 2yub_A           44 TTVQVKEVNRMHI----SPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQ  108 (118)
T ss_dssp             CEEEEEECCTTTS----CTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSCC
T ss_pred             CcEEEEEecCCCC----ChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEEE
Confidence            4899999987  6    4666789999999999999999988889999999987778999999976543

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.26  E-value=4.6e-07  Score=88.35  Aligned_cols=84  Identities=14%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             CCccEEEEEeecCCCCCeeeeeCC---cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILGN---KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~~---gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ...+..|.|.+...+.||.+..+.   |++|..|.+|    ++|..+||++||+|++|||+++.+++++++..+|+..+.
T Consensus         7 ~~~~r~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~g----SpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~   82 (216)
T 2krg_A            7 MLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPD----SPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (216)
T ss_dssp             TCCCEEEEEECCSSSSCEEECCCSSSCSCBEEEECTT----SHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCS
T ss_pred             ccceEEEEEEeCCCCceEEEEecCCCCCeEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCC
Confidence            345677888887655555554443   8999999887    455567799999999999999999999999999987777


Q ss_pred             eE-EEEEEeCCC
Q psy9827         273 KL-SLTIRREVP  283 (627)
Q Consensus       273 ~v-~l~V~r~~~  283 (627)
                      .+ .|+|.|++.
T Consensus        83 ~v~~l~V~R~g~   94 (216)
T 2krg_A           83 ETKLLVVDRETD   94 (216)
T ss_dssp             EEEEEECCHHHH
T ss_pred             eEEEEEEEECCE
Confidence            88 888877553

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.25  E-value=5.8e-06  Score=73.66  Aligned_cols=61  Identities=26%  Similarity=0.351  Sum_probs=52.2

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  285 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~~  285 (627)
                      |++|..|.++    ++|..+||++||+|++|||+++.++++.+++..++.. ..+.|.|.|++...
T Consensus        47 gv~V~~V~~~----spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~R~g~~~  107 (128)
T 1uf1_A           47 GIYITGVDPG----SEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVGRLP  107 (128)
T ss_dssp             CCEEEEECTT----CHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEEEECCSCCS
T ss_pred             CEEEEEECCC----CHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEECCccc
Confidence            8999999876    4566778999999999999999998888888888774 69999999977643

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.23  E-value=1.2e-06  Score=77.83  Aligned_cols=78  Identities=24%  Similarity=0.411  Sum_probs=60.6

Q ss_pred             EEEEeecCCCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCC-CCCCCEEEEeCceeCCCCCHHHHHHHHHcC-
Q psy9827         201 RVQLSKSRKKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHPTDGMSVKEARKLIDSS-  270 (627)
Q Consensus       201 ~V~L~k~~~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~-L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-  270 (627)
                      .+.+.+.....++|+.+.        .|++|..|.++    ++|..+| |++||+|++|||+++.  ++.++..+|+.. 
T Consensus        22 ~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~----spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~   95 (124)
T 1wh1_A           22 EVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPN----SIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEE   95 (124)
T ss_dssp             CBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSS----SHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSS
T ss_pred             EEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCC----CHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCC
Confidence            444555444345666552        47999999886    4556677 9999999999999999  899999999875 


Q ss_pred             CCeEEEEEEeCCCC
Q psy9827         271 KEKLSLTIRREVPR  284 (627)
Q Consensus       271 ~~~v~l~V~r~~~~  284 (627)
                      +..+.|+|.|++..
T Consensus        96 g~~v~l~v~R~g~~  109 (124)
T 1wh1_A           96 NKNFSLLIARPELQ  109 (124)
T ss_dssp             CCSCCEEEEECSSC
T ss_pred             CCEEEEEEEECCEE
Confidence            56899999997654

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.22  E-value=6.3e-06  Score=76.87  Aligned_cols=72  Identities=24%  Similarity=0.370  Sum_probs=60.3

Q ss_pred             eEEEecc--CCceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          52 RFITFQK--EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        52 r~v~l~k--~g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      +.+.+.+  .+.|||++.    .| +|..|.++|||+++||++||+|++|||.++.++.+..+...+.+.+..+.+.+.
T Consensus        90 ~~v~l~~~~~~~lG~~~~----~g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~  163 (166)
T 1w9e_A           90 RTITMHKDSTGHVGFIFK----NG-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM  163 (166)
T ss_dssp             EEEEEECCTTSCCSEEEE----TT-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             EEEEEecCCCCcEeEEEe----CC-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence            4444443  246888887    24 899999999999999999999999999999999999988888888888888765

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.21  E-value=2.6e-06  Score=75.65  Aligned_cols=62  Identities=31%  Similarity=0.431  Sum_probs=49.6

Q ss_pred             cCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827          69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus        69 ~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      ....|++|..|.++|||+++ |++||+|++|||.++.++.+..........++.+.|+| |++.
T Consensus        22 ~~~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           22 HQPDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             -CCCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CCCCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            34568999999999999999 99999999999999998755443322225688999999 7665

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.18  E-value=2.9e-06  Score=95.04  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=61.3

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~  139 (627)
                      .+||+.+... ..|++|..|.+||||+++||++||+|++|||..+. .............|+.|.|+|.|++......+.
T Consensus       485 ~~lG~~~~~~-~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~  562 (597)
T 4fgm_A          485 VNFGAKYKAS-PQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-EQSVKRILERYIPGDTVTIHAFRRDELMTLELT  562 (597)
T ss_dssp             CCCSEEEEEE-TTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-TTTHHHHHTTCCTTCEEEEEEEETTEEEEEEEE
T ss_pred             cccceEEecc-CCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-HHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence            4799988764 34799999999999999999999999999999994 433332222225789999999998876655554


Q ss_pred             c
Q psy9827         140 S  140 (627)
Q Consensus       140 ~  140 (627)
                      .
T Consensus       563 l  563 (597)
T 4fgm_A          563 W  563 (597)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.14  E-value=5e-06  Score=88.45  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=63.0

Q ss_pred             cEEEEEeecCCCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeE
Q psy9827         199 TLRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKL  274 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v  274 (627)
                      ...|.+.++. +.|+.+.++  .|++|..|.+|    ++|..+||++||+|++|||.++.++++++++.+|+.  .+..+
T Consensus        10 ~~~v~~~k~~-~lG~~i~gg~~~gi~V~~V~~g----spA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v   84 (391)
T 3tsz_A           10 MKLVKFRKGD-SVGLRLAGGNDVGIFVAGVLED----SPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV   84 (391)
T ss_dssp             EEEEEEECCS-SCCEEEEEETTTEEEEEEECTT----CHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEE
T ss_pred             cEEEEeecCC-ceeEEEEecCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeE
Confidence            3445555543 455555543  58999999987    455667799999999999999999999999999995  67799


Q ss_pred             EEEEEeCCC
Q psy9827         275 SLTIRREVP  283 (627)
Q Consensus       275 ~l~V~r~~~  283 (627)
                      +|+|.|++.
T Consensus        85 ~l~v~r~~~   93 (391)
T 3tsz_A           85 TILAQKKKD   93 (391)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEeeCCc
Confidence            999999643

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.13  E-value=5.7e-06  Score=80.30  Aligned_cols=71  Identities=25%  Similarity=0.334  Sum_probs=56.9

Q ss_pred             CceeEEEEcc-----CCCCEEEEEeCCCChhhhcCCCC-CCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827          60 GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQGLQP-GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus        60 g~lG~~i~g~-----~~~gi~V~~V~~gspA~~aGL~~-GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      +.||+++...     ...|++|..|.++|||+++||++ ||+|++|||. +.++.+......- ..++.+.|+|.|+..
T Consensus        95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~~~l~~-~~g~~v~l~v~r~~~  171 (209)
T 3rle_A           95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESEDLFSLIET-HEAKPLKLYVYNTDT  171 (209)
T ss_dssp             SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHHHHHHH-TTTSCEEEEEEETTT
T ss_pred             CccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHHHHHHh-CCCCeEEEEEEECCc
Confidence            3689988742     23689999999999999999999 9999999998 8877665543332 368899999988654

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.09  E-value=3.4e-06  Score=89.91  Aligned_cols=69  Identities=23%  Similarity=0.226  Sum_probs=56.2

Q ss_pred             ceeEEEEccCC--C--CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827          61 SVGIRLTGGNK--V--GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus        61 ~lG~~i~g~~~--~--gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      |+||++....+  .  .++|..|.+||||++|||++||+|++|||.++.++.   ...+++..+..|+|++.|.+.
T Consensus        75 G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           75 GFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             SEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             ceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            78888776432  2  378999999999999999999999999999999885   334445578899999988654

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=97.99  E-value=4.5e-06  Score=69.73  Aligned_cols=57  Identities=21%  Similarity=0.348  Sum_probs=47.5

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  283 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~  283 (627)
                      |++|..|.++    ++|.. +|++||+|++|||.++.  +.+++..+|...  +..+.|+|.|++.
T Consensus         2 Gv~V~~V~~~----spA~~-GL~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~   60 (91)
T 2kjp_A            2 GIYASSVVEN----MPAKG-KIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREEK   60 (91)
T ss_dssp             CSSCCCCCCS----SCCSS-CCCSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSSC
T ss_pred             ceEEEEECCC----ChHHH-cCCCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECCE
Confidence            5678888876    34445 79999999999999999  789999999875  6789999999764

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.97  E-value=9.8e-07  Score=93.96  Aligned_cols=65  Identities=20%  Similarity=0.356  Sum_probs=0.0

Q ss_pred             CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      ++|||++.++     +|..|.+||||+++||++||+|++|||.++.++++.+++..++..+..+.|+|..
T Consensus       308 ~~lG~~i~~g-----~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p  372 (388)
T 3suz_A          308 YQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP  372 (388)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             CccceEEecC-----EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence            3678876643     8999999999999999999999999999999999999999999888999988863

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=97.94  E-value=2.5e-05  Score=66.32  Aligned_cols=58  Identities=17%  Similarity=0.317  Sum_probs=49.0

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.+++    +|.. ||++||+|++|||+++.  +.+++...|..  .+..+.|+|.|++.
T Consensus         7 ~Gv~V~~V~~~s----pA~~-GL~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~   66 (100)
T 3i18_A            7 DGVYVMSVKDDV----PAAD-VLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDK   66 (100)
T ss_dssp             CCEEEEEECTTS----GGGG-TCCTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             CCEEEEEeCCCC----chHH-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            488999998873    4444 89999999999999999  88999999986  35789999999654

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.93  E-value=2e-05  Score=70.79  Aligned_cols=59  Identities=15%  Similarity=0.264  Sum_probs=50.5

Q ss_pred             CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827         218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  283 (627)
Q Consensus       218 ~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~  283 (627)
                      ..|++|..|.++    ++|. +||++||+|++|||.++.  +..++...+...  +..+.|+|.|++.
T Consensus        56 ~~g~~V~~V~~~----spA~-aGL~~GD~I~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  116 (134)
T 2l97_A           56 TSGVIVRSVQSN----MPAN-GHLEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITYYRNGK  116 (134)
T ss_dssp             CSCEEEEECSTT----SGGG-TTSCSSCEEEEETTEECC--CHHHHHHHHHHSSTTCEEEEEEEETTE
T ss_pred             CCCEEEEEECCC----CchH-HCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            368899999876    4666 899999999999999999  889999988874  6799999999754

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.89  E-value=1.8e-05  Score=66.38  Aligned_cols=58  Identities=16%  Similarity=0.373  Sum_probs=48.5

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~  283 (627)
                      .|++|..|.+++    +|.. +|++||+|++|||.++.  +..++..++...  +..+.|.|.|++.
T Consensus         5 ~Gv~V~~V~~~s----pA~~-GL~~GD~Il~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~   64 (94)
T 2kl1_A            5 KGVYVMSVLPNM----PAAG-RLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRDRK   64 (94)
T ss_dssp             CCEECCCCCTTS----TTBT-TBCTTCEEEEETTBCCC--CHHHHHHHHHHSCTTCCEEEEEEETTE
T ss_pred             CcEEEEEECCCC----hHHh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            468899998773    4445 79999999999999999  789999999874  6799999999764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.88  E-value=3.3e-06  Score=86.13  Aligned_cols=151  Identities=9%  Similarity=-0.003  Sum_probs=89.2

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCc-ccCCCCCCCCHHHHHHHHh-cccc---cCCcee------hHHhHHhCCC
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKF-SAPRKFNFILWATIKDTAM-YQSS---KEPGMY------QGKDSMYQGK  518 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f-~~~~~~~Fvs~e~f~~~i~-~~~~---~~~~~Y------~V~~v~~~gk  518 (627)
                      ..+.|||+||+   |+|+.++|.+.++..+ ....-.++.....|..+++ +++.   +.+++|      .|++.+++|+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~  111 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGY  111 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            45789999999   9999999998875322 2111011111122333321 2221   124555      5677788999


Q ss_pred             cEEEecC--Cc-----e--eccccCCCCceeEEEEcCCCcc-----cC-----------CCCCH-HHHHHHHHHHHH--H
Q psy9827         519 DSMYQGK--ES-----M--YQGKDSMYQGKDSMYQGKDSMY-----QG-----------KDIKK-EVKIKLFEQSQK--L  570 (627)
Q Consensus       519 ~ciLdi~--~~-----l--~~~~~~~~P~~~vIFI~ppsl~-----~~-----------~~~~e-~~~~~~~~~~~~--~  570 (627)
                      .+|||++  ..     +  .++. .=+++.+++|+.||++.     ++           .|.++ +....+..+...  -
T Consensus       112 ~vIld~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~~  190 (287)
T 1gvn_B          112 NLVIEGTGRTTDVPIQTATMLQA-KGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLE  190 (287)
T ss_dssp             CEEECCCCCCSHHHHHHHHHHHT-TTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCHHHHHHHHHHHHh-CCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999  21     1  1111 11454447888999843     22           24442 323334333332  2


Q ss_pred             HHHhcCcccEEEECCCH--------HHHHHHHHHHHHhhCCC
Q psy9827         571 EKVWSHVFTGTITLSGV--------DVWYRKTRELIEKQQSS  604 (627)
Q Consensus       571 e~~~~~~fd~vi~n~~l--------~~~~~~l~~~i~~~~~~  604 (627)
                      |......||++++||+.        +.+...+.++|..+..+
T Consensus       191 el~~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~~r  232 (287)
T 1gvn_B          191 TLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNR  232 (287)
T ss_dssp             HHHHHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHHSC
T ss_pred             HHHcCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHHcC
Confidence            44567889999999874        77778888888877654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.84  E-value=3.5e-05  Score=83.31  Aligned_cols=65  Identities=29%  Similarity=0.339  Sum_probs=54.2

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      .|++|..|.++|||+++||++||+|++|||.++.++  .+....++..+..+.|+|.|++..+....
T Consensus       363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~~~~~~  427 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGNESIYLLM  427 (436)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCeEEEEEEECCEEEEEEE
Confidence            489999999999999999999999999999999876  44555666566799999999876655443

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.81  E-value=2.5e-05  Score=67.79  Aligned_cols=58  Identities=19%  Similarity=0.375  Sum_probs=50.1

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +.+++...++. +..+.|+|.|++.
T Consensus        35 ~gv~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~   92 (113)
T 2pzd_A           35 HGVLIHKVILG----SPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRE   92 (113)
T ss_dssp             SCEEEEEEBTT----SHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTE
T ss_pred             CCeEEEEeCCC----ChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCE
Confidence            47899999876    45667889999999999999998  88999999987 6789999999654

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.79  E-value=2.7e-05  Score=84.43  Aligned_cols=61  Identities=16%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccc
Q psy9827          72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY  134 (627)
Q Consensus        72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~  134 (627)
                      .|++|..|.++|||+++||++||+|++|||.++.++  .+....++..+..+.|+|.|++..+
T Consensus       386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~~~~~v~l~v~R~g~~~  446 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVLRGPGSM  446 (451)
T ss_dssp             EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTSSCSCEEEEEEETTEEE
T ss_pred             CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhcCCCeEEEEEEECCEEE
Confidence            478999999999999999999999999999999876  4555666677889999999876543

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.78  E-value=2.3e-05  Score=64.70  Aligned_cols=58  Identities=19%  Similarity=0.191  Sum_probs=45.9

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      |+.|..+.++    ++|..+||++||+|++|||+++.  +..++..++..  .++.+.|.|.|++.
T Consensus        20 G~~V~~~~~~----s~A~~aGl~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           20 GYRVSPGKDP----VLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEECSCH----HHHHHTTCCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEeCCCC----CHHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            4556665443    35567899999999999999999  89999988875  35689999999753

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=97.75  E-value=3.6e-05  Score=64.69  Aligned_cols=56  Identities=18%  Similarity=0.173  Sum_probs=47.4

Q ss_pred             EEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC--CeEEEEEEeCCC
Q psy9827         222 FVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVP  283 (627)
Q Consensus       222 ~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~--~~v~l~V~r~~~  283 (627)
                      +|..|.++    ++|..+||++||+|++|||+.+.  +++++...|....  ..+.|+|.|++.
T Consensus         5 ~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            5 VVGEIAAN----SIAAEAQIAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             BEEEECTT----SHHHHTTCCTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EEEeeCCC----CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            57888776    56778899999999999999999  8999999887643  589999999763

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.66  E-value=4.3e-05  Score=66.22  Aligned_cols=58  Identities=24%  Similarity=0.445  Sum_probs=48.8

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +..++...+. .+..+.|.|.|++.
T Consensus        35 ~gv~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~-~g~~v~l~v~R~g~   92 (112)
T 2p3w_A           35 SGIYVQEVAPN----SPSQRGGIQDGDIIVKVNGRPLV--DSSELQEAVL-TESPLLLEVRRGND   92 (112)
T ss_dssp             SSEEEEEECTT----SHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHH-HCSSEEEEEEETTE
T ss_pred             CCeEEEEECCC----ChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHh-CCCeEEEEEEECCE
Confidence            47899999876    45666789999999999999999  8899988885 46789999998653

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.64  E-value=4.1e-05  Score=63.53  Aligned_cols=57  Identities=18%  Similarity=0.273  Sum_probs=47.0

Q ss_pred             EEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy9827         221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVP  283 (627)
Q Consensus       221 i~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~~~  283 (627)
                      ++|..|.++    ++|..+||++||+|++|||+++.  +.+++...+... +..+.|+|.|++.
T Consensus         6 ~~V~~v~~~----spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~   63 (91)
T 2zpm_A            6 PVLENVQPN----SAASXAGLQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGS   63 (91)
T ss_dssp             CBCSEECTT----SHHHHTTCCTTCEEEEETTEECC--CHHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred             eEEEEECCC----ChHHhcCCCCCCEEEEECCeEcC--CHHHHHHHHhcCCCCeEEEEEEECCe
Confidence            357788765    45666799999999999999999  889999998864 5689999998653

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.54  E-value=0.00031  Score=72.57  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             CCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         211 DDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       211 ~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      ..||+....|++|..|.++    ++|..+||++||+|++|||+++.  +..++..+|+.  .+..+.|+|.|++.
T Consensus       236 ~~~g~~~~~g~~V~~V~~~----spA~~aGL~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  304 (318)
T 1te0_A          236 QGGGIDQLQGIVVNEVSPD----GPAANAGIQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDK  304 (318)
T ss_dssp             SSSCSSSCCCEEEEEECTT----STTTTTCCCTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred             HhccCCCCCcEEEEEeCCC----ChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            3455555578999999886    56677899999999999999999  88999999986  46799999999764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.51  E-value=0.00012  Score=87.78  Aligned_cols=93  Identities=12%  Similarity=0.006  Sum_probs=67.7

Q ss_pred             ccCCCCCccccccCCCCceEEEeccCCceeEEEEccCCCCEEEEEeCCC--------ChhhhcC--CCCCCEEEEECCEe
Q psy9827          34 VQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPG--------SPASLQG--LQPGDKILKVNDMD  103 (627)
Q Consensus        34 i~~~~~d~~~~~~~~~~~r~v~l~k~g~lG~~i~g~~~~gi~V~~V~~g--------spA~~aG--L~~GD~Il~VnG~~  103 (627)
                      +....+|+|+.+ ...+.....-...+++|+.+... +.+++|..|.+|        |||+++|  |+ ||+|++|||.+
T Consensus       712 ~~~~l~d~ht~~-~~~~~~~~~~~~~~g~G~~~~~~-~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~  788 (1045)
T 1k32_A          712 MQGEYRTSHSYE-MGGTFTDKDPFRSGRIACDFKLD-GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGET  788 (1045)
T ss_dssp             HHHTTCCSCCCE-ECCCCCSCCCCCCCBCSEEEEEE-TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEE
T ss_pred             HHHhcCCCcceE-ChhHhccccccccceecEEEEEe-CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEE
Confidence            345566888844 33332221111225899888764 457999999998        9999999  99 99999999999


Q ss_pred             CCCCCHHHHHHHHh-cCCCeeEEEEEeCC
Q psy9827         104 MKGITREEAVLFLL-SLQDQIHLIVQNRR  131 (627)
Q Consensus       104 v~~~~~~~~~~~l~-~~g~~V~L~v~r~~  131 (627)
                      +.++.  ++..++. ..|..|.|+|.|.+
T Consensus       789 ~~~~~--~~~~~~~~~~g~~v~l~v~r~~  815 (1045)
T 1k32_A          789 VGAGS--NIYRVLSEKAGTSARIRLSGKG  815 (1045)
T ss_dssp             CBTTB--CHHHHHHTTTTSEEEEEEECSS
T ss_pred             ccchh--hHHHhhcCCCCCEEEEEEECCC
Confidence            99886  3344444 67899999999876

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.51  E-value=6.8e-05  Score=64.20  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=39.3

Q ss_pred             CCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         235 SPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       235 ~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      ++..+||++||+|++|||+++.  ++.++..++..  .++.+.|.|.|++.
T Consensus        49 ~A~~aGl~~GDvI~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           49 LFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             HHHHHTCCTTCEEEEETTEETT--STTHHHHHHHHHTTCSEEEEEEEETTE
T ss_pred             HHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence            4466899999999999999999  77888888874  46789999999753

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.48  E-value=0.0002  Score=63.40  Aligned_cols=57  Identities=18%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+ |++||+|++|||.++.  +.+++...+..  .+..+.|+| |++.
T Consensus        25 ~gv~V~~V~~~----spA~~a-L~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           25 DGVQIDSVVPG----SPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCEEEEEECSS----SGGGGT-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CceEEEEECCC----ChHHHh-cCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            57899999876    455567 9999999999999999  88999999884  467899999 8654

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.37  E-value=0.00015  Score=75.82  Aligned_cols=65  Identities=25%  Similarity=0.388  Sum_probs=55.0

Q ss_pred             eeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         213 FGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       213 ~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      ||+....|++|..|.++    ++|..+||++||+|++|||+++.  +..++..++..  .+..+.|+|.|++.
T Consensus       257 ~gl~~~~G~~V~~V~~~----spA~~aGL~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  323 (345)
T 3stj_A          257 FNLDVQRGAFVSEVLPG----SGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK  323 (345)
T ss_dssp             TTCSCCSSEEEEEECTT----SHHHHHTCCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             cCCCCCceEEEEEeccC----ChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            44444468999999886    56677899999999999999999  89999999986  46799999999765

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.34  E-value=0.00012  Score=58.59  Aligned_cols=59  Identities=8%  Similarity=-0.030  Sum_probs=43.7

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCC--CCCCCCCCccccccc-CCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVP--RAGRSRNPLLDVSLS-QLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~--~~gl~~gdil~v~~~-~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.+++..+|+  ++.|.+||+++| +. .++.    .||+++.   +   .+.|++|+...
T Consensus         6 ~~~~~~Alydy---~~~~~~~~~~~~~eLsf~~Gd~i~v-~~~~~~~----gWw~g~~---~---g~~G~fP~~yv   67 (75)
T 2ege_A            6 SGKIMIAALDY---DPGDGQMGGQGKGRLALRAGDVVMV-YGPMDDQ----GFYYGEL---G---GHRGLVPAHLL   67 (75)
T ss_dssp             CSEEEEESSCB---CTTTTCCCSSSCCBCCBCTTCEEEE-ESCCCTT----CEEEEES---S---SCEEEEETTTE
T ss_pred             CCcEEEECCCC---CCCccccCCCCCCcceECCCCEEEE-eEccCCC----CEEEEEE---C---CcEEEEChHHe
Confidence            45689999999   66676777775  445569999999 64 3443    7999975   2   48999999753

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=97.25  E-value=0.00025  Score=56.84  Aligned_cols=57  Identities=14%  Similarity=-0.008  Sum_probs=41.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.|.    .||.++..+..   .+.|++|+...
T Consensus         9 ~~~~~~alydy---~~~~~-----~eLsf~~Gd~i~v-~~~~~~----~Ww~g~~~~~~---g~~G~~P~~yv   65 (76)
T 2ed1_A            9 KVRRVKTIYDC---QADND-----DELTFIEGEVIIV-TGEEDQ----EWWIGHIEGQP---ERKGVFPVSFV   65 (76)
T ss_dssp             CCEEEEESSCC---CCSSS-----SBCCCCSSCEEEE-SSCCSS----SEEEEEETTCT---TCEEEEEGGGE
T ss_pred             CCeEEEECccC---CCCCc-----CCcCcCCCCEEEE-EEecCC----CEEEEEECCCC---CCEEEEehHHe
Confidence            46789999999   33322     2567889999999 665554    89999864433   48999999753

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.25  E-value=0.00027  Score=56.64  Aligned_cols=60  Identities=17%  Similarity=0.115  Sum_probs=44.5

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCC--CCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAG--RSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~g--l~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.+++..||.+..  |.+||++.| +.+.|.   ..||.++.   +   .+.|++|+...
T Consensus         6 ~~~~~~Al~dy---~~~~~~~~~~~~~eLsf~~Gd~i~v-~~~~~~---~gWw~g~~---~---g~~G~~P~~yv   67 (76)
T 2csi_A            6 SGRRMVALYDY---DPRESSPNVDVEAELTFCTGDIITV-FGEIDE---DGFYYGEL---N---GQKGLVPSNFL   67 (76)
T ss_dssp             CSEEEECSSCC---CTTTTSCSSSTTTSCCCCTTCEEEE-ESSCCS---SSEEEEEE---T---TEEEEEEGGGC
T ss_pred             CccEEEEcccC---CCCCcccCCCCCCcccCCCCCEEEE-eEecCC---CCeEEEEE---C---CcEEEEehHHE
Confidence            35689999999   66677777886544  559999999 665442   15999864   2   48999999754

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.16  E-value=0.001  Score=68.75  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEe-CCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRR-EVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r-~~~  283 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +..++...+..  .+..++|+|.| ++.
T Consensus       242 ~g~~V~~v~~~----spA~~aGl~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          242 LGAKIVEVVAG----GAAANAGVPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             SSEEEEEECTT----STTTTTTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             CceEEEEECCC----ChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            57999999876    46667899999999999999999  88999999875  46789999999 653

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=97.11  E-value=0.0002  Score=61.56  Aligned_cols=58  Identities=12%  Similarity=-0.035  Sum_probs=42.1

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .+.+|++|+++|   .+.++     -++.|.+||++.| +.++|.    .||+++..+..   .+.|+||+...
T Consensus         3 ~~~~~~~Alydy---~a~~~-----~ELsf~~Gd~i~v-l~~~~~----~Ww~g~~~g~~---g~~G~fPsnYV   60 (108)
T 2rqv_A            3 LGSLYAIVLYDF---KAEKA-----DELTTYVGENLFI-CAHHNC----EWFIAKPIGRL---GGPGLVPVGFV   60 (108)
T ss_dssp             CSCCCEEESSCC---CCCSS-----SBCCCCSSEEECC-CCEETT----TEEEECCSSSS---CCCEEEESTTC
T ss_pred             CCCeEEEECCCc---CCCCC-----CcCCcCCCCEEEE-eEecCC----CEEEEEECCcc---CCeeEeecceE
Confidence            356889999999   33322     2567889999999 666554    89999774432   46799999754

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=97.11  E-value=0.00035  Score=53.26  Aligned_cols=53  Identities=9%  Similarity=-0.096  Sum_probs=37.9

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .++||+++|   .+.+++    .++.|..||++.| +.+.|.    .||.++..  +   .+.|++|+..
T Consensus         4 ~~~rAlydy---~~~~~~----e~Ls~~~Gd~i~v-~~~~~~----~Ww~g~~~--~---G~~G~fP~ny   56 (60)
T 2lx7_A            4 ARCRTLYPF---SGERHG----QGLRFAAGELITL-LQVPDG----GWWEGEKE--D---GLRGWFPASY   56 (60)
T ss_dssp             CEEEESCCC---CSCCCS----SCCCCCTTCEEEB-SCCCTT----SCEEEECT--T---SCEEEECGGG
T ss_pred             CEEEECccc---CCCCCC----CCccCCCCCEEEE-eEecCC----CeEEEEeC--C---CCEEEEcHHH
Confidence            368999999   433221    1367889999999 766665    89999642  2   3789999974

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.07  E-value=0.0052  Score=58.81  Aligned_cols=145  Identities=12%  Similarity=0.034  Sum_probs=89.3

Q ss_pred             CCCceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCC----C---CCCCHHHHHHHHhcccc-----cCC--ce
Q psy9827         452 GFIRPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRK----F---NFILWATIKDTAMYQSS-----KEP--GM  507 (627)
Q Consensus       452 ~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~----~---~Fvs~e~f~~~i~~~~~-----~~~--~~  507 (627)
                      .....++|+||+   |+||.+.|....|..+..       +..    .   .|.+...|..+...+.+     +.+  ++
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~   97 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR   97 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence            456789999999   999999998776533221       111    1   36677778776543322     223  45


Q ss_pred             e-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CCC--CHHHHHHHHHHHHHHHHH
Q psy9827         508 Y-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDI--KKEVKIKLFEQSQKLEKV  573 (627)
Q Consensus       508 Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~--~e~~~~~~~~~~~~~e~~  573 (627)
                      |     .+++.+++++.|+++++ ..+ ..+  ..+|-..++|+..|++..+     ...  .+...++.+.+..+ +..
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~-~l~  174 (207)
T 1znw_A           98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIK--KTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARI-ELA  174 (207)
T ss_dssp             EEEEHHHHHHHHHHTCCEEEECCHHHHHHHH--HHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHH-HHH
T ss_pred             cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHH--HhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHh
Confidence            5     67788888999999988 333 211  2334222799999984332     221  23333333333322 222


Q ss_pred             hcCcccEEEECCCHHHHHHHHHHHHH
Q psy9827         574 WSHVFTGTITLSGVDVWYRKTRELIE  599 (627)
Q Consensus       574 ~~~~fd~vi~n~~l~~~~~~l~~~i~  599 (627)
                      ..+.++.+++++|+++++.....++-
T Consensus       175 ~~~g~tvi~vtHdl~~~~~~~d~i~~  200 (207)
T 1znw_A          175 AQGDFDKVVVNRRLESACAELVSLLV  200 (207)
T ss_dssp             GGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred             hhccCcEEEECCCHHHHHHHHHHHHH
Confidence            34568999999999999887777664

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.06  E-value=8.7e-05  Score=80.38  Aligned_cols=70  Identities=27%  Similarity=0.403  Sum_probs=0.0

Q ss_pred             eeEEEEcc-CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827          62 VGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE  133 (627)
Q Consensus        62 lG~~i~g~-~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~  133 (627)
                      +|+.+... ...|++|..|.++|||+++||++||+|++|||.++.++.+  ....++.....+.|+|.|++..
T Consensus       372 ~G~~l~~~~~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~--l~~~l~~~~~~v~l~v~R~g~~  442 (448)
T 1ky9_A          372 EGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAE--LRKVLDSKPSVLALNIQRGDST  442 (448)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cceEeeccCCCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHcCCCeEEEEEEECCEE
Confidence            36655422 2357999999999999999999999999999999987654  3444554445888988886644

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.05  E-value=0.00052  Score=71.03  Aligned_cols=58  Identities=19%  Similarity=0.375  Sum_probs=51.0

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +.+++..+++. ++.+.|.|.|++.
T Consensus       256 ~gv~V~~V~~~----spA~~aGl~~GDvI~~ing~~v~--~~~~l~~~l~~-~~~v~l~v~R~g~  313 (325)
T 1lcy_A          256 HGVLIHKVILG----SPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRE  313 (325)
T ss_dssp             SCEEEEEECTT----SHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHTT-CSSEEEEEEETTE
T ss_pred             CCeEEEEeCcC----ChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHhC-CCeEEEEEEECCE
Confidence            58999999876    56677899999999999999999  89999999986 5789999999764

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.00  E-value=0.0012  Score=69.94  Aligned_cols=61  Identities=13%  Similarity=0.304  Sum_probs=52.3

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~  283 (627)
                      .+++|..|.++    ++|..+||++||+|++|||+++.+++.+++..+|+. .+..++|+|.|++.
T Consensus        99 ~~~~V~~v~~~----spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           99 KDVVVLTPAPG----GPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             SCEEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             CcEEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            57999999886    466678899999999999999998888999999986 45689999998754

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=96.96  E-value=0.00029  Score=54.69  Aligned_cols=54  Identities=17%  Similarity=-0.001  Sum_probs=38.5

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+.+||+++|   .+.++     -++.|..||++.| +.+.|.    .||.+.... +   .+.|++|+..
T Consensus         6 ~~~~~Alydy---~a~~~-----~ELs~~~Gd~i~v-~~~~~~----gWw~g~~~~-~---g~~G~~P~ny   59 (65)
T 2lj0_A            6 LFSYQALYSY---IPQND-----DELELRDGDIVDV-MEKCDD----GWFVGTSRR-T---KQFGTFPGNY   59 (65)
T ss_dssp             SCEEEESSCB---CCSST-----TBCCBCTTCEEEE-EEECTT----SEEEEEETT-T---CCEEEEETTS
T ss_pred             CEEEEEceeE---CCCCc-----CCcCCCCCCEEEE-eEeCCC----CEEEEEECC-C---CCEEEEehhH
Confidence            3458999999   33332     2567889999999 665554    799986543 2   3789999964

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=96.95  E-value=0.00043  Score=54.01  Aligned_cols=53  Identities=13%  Similarity=0.075  Sum_probs=39.1

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +.+++     .||.++..+     .+.|+||+...
T Consensus         4 ~~~~~Alydy---~a~~~-----~ELsf~~Gd~i~v-l~~~~-----~Ww~~~~~~-----g~~G~~Psnyv   56 (67)
T 2b86_A            4 EVIVIAKWDY---TAQQD-----QELDIKKNERLWL-LDDSK-----TWWRVRNAA-----NRTGYVPSNYV   56 (67)
T ss_dssp             CEEEEESSCB---CCSST-----TSCCBCTTCEEEE-EECSS-----SSCEEECTT-----SCEEECCCCSE
T ss_pred             CeEEEEeeeE---CCCCC-----CccccCCCCEEEE-EecCC-----CeEEEEeCC-----CCEEEeChHHE
Confidence            5688999999   33322     3567789999999 66643     799997652     48999999754

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=96.92  E-value=0.00035  Score=54.17  Aligned_cols=54  Identities=13%  Similarity=0.086  Sum_probs=39.2

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +.++|.    .||.++..+     .+.|++|+...
T Consensus         3 ~~~~~Alydy---~~~~~-----~eLsf~~Gd~i~v-~~~~~~----~Ww~g~~~~-----g~~G~~P~~yv   56 (65)
T 1b07_A            3 AEYVRALFDF---NGNDE-----EDLPFKKGDILRI-RDKPEE----QWWNAEDSE-----GKRGMIPVPYV   56 (65)
T ss_dssp             CCEEEESSCB---CCSST-----TBCCBCTTCEEEE-EECSSS----SEEEEECTT-----SCEEEEEGGGE
T ss_pred             ceEEEECCcC---CCCCC-----CccCCcCCCEEEE-EEecCC----CeEEEEECC-----CCEEEEChHHE
Confidence            3578999999   33322     2567789999999 666554    899997542     48999999753

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=96.80  E-value=0.0011  Score=51.53  Aligned_cols=55  Identities=13%  Similarity=-0.023  Sum_probs=39.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|.+   .+     ..++.|.+||++.| +.+.|.    .||.++..+     .+.|++|+...
T Consensus         7 ~~~~~~al~dy~~---~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-----g~~G~~P~~yv   61 (67)
T 1aww_A            7 ELKKVVALYDYMP---MN-----ANDLQLRKGDEYFI-LEESNL----PWWRARDKN-----GQEGYIPSNYV   61 (67)
T ss_dssp             CCCEEEBSSCCCC---SS-----SSSCCCCSSCEEEC-CCCCSS----SEECCBCTT-----SCBCCEETTTB
T ss_pred             CCeEEEECccCCC---CC-----CCCccCCCCCEEEE-EEccCC----CcEEEEECC-----CCEEEEchHhE
Confidence            4567899999933   22     12567789999999 665554    799997542     47899999754

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.78  E-value=0.00078  Score=53.90  Aligned_cols=60  Identities=13%  Similarity=0.014  Sum_probs=40.7

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCcc---ceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQE---VQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~---~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +..+|.    .||.++....+++.   ...|++|+...
T Consensus         6 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~~~g~~~~~~~~G~~P~~yv   68 (77)
T 2d8j_A            6 SGQYFVALFDY---QARTA-----EDLSFRAGDKLQV-LDTSHE----GWWLARHLEKKGTGLGQQLQGYIPSNYV   68 (77)
T ss_dssp             CCEEEEESSCB---CCSSS-----SBCCBCTTCCEEE-EECCSS----SEEEEEECSSCCSSCCCCSEEEEETTTE
T ss_pred             CCCEEEEccCC---CCCCC-----CccCCCCCCEEEE-EECCCC----CeEEEEECCCCCcCcccCCceEECHHHe
Confidence            35689999999   33222     2567889999999 666554    89999876422311   23499999753

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=96.77  E-value=0.00055  Score=53.42  Aligned_cols=59  Identities=15%  Similarity=-0.016  Sum_probs=41.1

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ....+++|+++|.   +.++     .++.|.+||++.| +.+.|.    .||.++..+. +...+.|++|+..
T Consensus         5 ~~~~~~~Alydy~---~~~~-----~eLsf~~Gd~i~v-~~~~~~----~Ww~g~~~~~-g~~~~~G~fP~~y   63 (68)
T 1tg0_A            5 EVPFKVVAQFPYK---SDYE-----DDLNFEKDQEIIV-TSVEDA----EWYFGEYQDS-NGDVIEGIFPKSF   63 (68)
T ss_dssp             CSSEEEEESSCBC---CSCT-----TBCCBCTTCEEEE-EEECSS----SEEEEEEECT-TSCEEEEEEEGGG
T ss_pred             CCCEEEEECeeEC---cCCc-----CCCCCCCCCEEEE-EEecCC----CeEEEEECCC-CCCCEEEEEchHH
Confidence            3456899999993   3221     3567889999999 665554    7999977542 2123789999974

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=96.75  E-value=0.0014  Score=52.47  Aligned_cols=55  Identities=9%  Similarity=-0.045  Sum_probs=39.8

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   ...++     .++.|..||++.| +.++|.    .||.++..  +   .+.|++|+...
T Consensus        19 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~--~---g~~G~~P~~yv   73 (77)
T 1awj_A           19 EETLVIALYDY---QTNDP-----QELALRCDEEYYL-LDSSEI----HWWRVQDK--N---GHEGYAPSSYL   73 (77)
T ss_dssp             SSSCCCCCCCB---CCCCT-----TSCCBCSSSCCSC-CCTTSS----SBCCCCCS--S---SCCCCCBSTTC
T ss_pred             CceEEEECccC---CCCCc-----CCcCCCCCCEEEE-EEecCC----CCEEEEEC--C---CCEEEEehHHE
Confidence            35678999999   33322     2567889999999 666654    79999752  2   47899999754

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.66  E-value=0.0014  Score=51.18  Aligned_cols=55  Identities=11%  Similarity=-0.109  Sum_probs=39.2

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.++|.    .||.++..+     ...|++|+...
T Consensus         6 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-----~~~G~~P~~yv   60 (69)
T 2eqi_A            6 SGRTVKALYDY---KAKRS-----DELTFCRGALIHN-VSKEPG----GWWKGDYGT-----RIQQYFPSNYV   60 (69)
T ss_dssp             CCCEEEESSCB---CCCSS-----SCCCBCTTCEEES-CCCCSS----SCEEEEETT-----EEEEEECGGGE
T ss_pred             CCcEEEECeeE---CCCCc-----CccCCCCCCEEEE-EEcCCC----CeEEEEECC-----CCEEEEchHHc
Confidence            45679999999   33322     2567789999999 666554    899997532     35699999753

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=96.64  E-value=0.0016  Score=51.33  Aligned_cols=59  Identities=10%  Similarity=-0.035  Sum_probs=39.7

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.|  .+.+.    .||.++....+|+....|++|+...
T Consensus         9 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v--~~~~~----~Ww~g~~~~~~g~~~~~G~~P~~yv   67 (72)
T 2kgt_A            9 LGPKYVGLWDF---KSRTD-----EELSFRAGDVFHV--ARKEE----QWWWATLLDEAGGAVAQGYVPHNYL   67 (72)
T ss_dssp             CCCEEECCTTC---BCSST-----TSCBCCTTCCEEE--EEECS----SCEEEEEECTTSCEEEEEEECTTTS
T ss_pred             CCcEEEEcccC---CCCCc-----CCcCCCCCCEEEE--eeCCC----CEEEEEEcCCCCCEeCCcEEcHhHE
Confidence            45689999999   33221     3567789999999  34333    7999987643343333499999753

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=96.64  E-value=0.0012  Score=53.75  Aligned_cols=59  Identities=12%  Similarity=-0.002  Sum_probs=41.4

Q ss_pred             CceeeCCCCCC-CCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRG-GPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y-~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++| .+.+        ..++.|..||++.| +.+.|.    .||.++....+....+.|++|+..
T Consensus        17 ~~~~~~Alydy~~a~~--------~~eLsf~~GDiI~V-~~~~~~----gWw~G~~~~~~~~tg~~G~fPsny   76 (83)
T 2ke9_A           17 GSLKVRALKDFWNLHD--------PTALNVRAGDVITV-LEQHPD----GRWKGHIHESQRGTDRIGYFPPGI   76 (83)
T ss_dssp             CCEEEEESSCBCCCSC--------TTBCCBCTTCEEEE-SCSSCS----SCEEEEECCSSTTSCCCEEECGGG
T ss_pred             CCeEEEEccccCCCCC--------CCcccccCCCEEEE-EEecCC----CeEEEEECCCCCCCCCEEEechHH
Confidence            35689999999 3321        13567889999999 666654    799997553222235899999874

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=96.62  E-value=0.00099  Score=52.00  Aligned_cols=54  Identities=13%  Similarity=0.042  Sum_probs=39.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|..||++.| +..++     .||.++..+     .+.|++|+...
T Consensus         7 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~-----~Ww~~~~~~-----g~~G~~P~~yv   60 (68)
T 2k2m_A            7 ALKWVLCNYDF---QARNS-----SELSVKQRDVLEV-LDDSR-----KWWKVRDPA-----GQEGYVPYNIL   60 (68)
T ss_dssp             CCCEEEESSCB---CCCSS-----SBCCBCTTCEEEE-EECSS-----SEEEEECTT-----SCCEEEEGGGE
T ss_pred             CCEEEEECccC---CCCCC-----CcccCCCCCEEEE-EEcCC-----CeEEEEeCC-----CCEEEEEhhhE
Confidence            35678999999   33322     2567889999999 66553     799997642     37899999754

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=96.61  E-value=0.00076  Score=50.55  Aligned_cols=51  Identities=12%  Similarity=0.072  Sum_probs=36.9

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      +++|+++|.   +.+     ..++.|.+||++.| +...|.    .||.++..+     .+.|++|+..
T Consensus         3 ~~~al~dy~---~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-----g~~G~~P~~y   53 (57)
T 1cka_A            3 YVRALFDFN---GND-----EEDLPFKKGDILRI-RDKPEE----QWWNAEDSE-----GKRGMIPVPY   53 (57)
T ss_dssp             EEEESSCBC---CSS-----TTBCCBCTTCEEEE-EECSSS----SEEEEECTT-----SCEEEEEGGG
T ss_pred             EEEECCcCC---CCC-----CCCCCCCCCCEEEE-EEecCC----CcEEEEeCC-----CCEEEEeHHH
Confidence            678888883   322     12567889999999 665544    799997543     4889999974

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.61  E-value=0.0015  Score=54.74  Aligned_cols=60  Identities=12%  Similarity=0.017  Sum_probs=41.3

Q ss_pred             CceeeCCCCCCCCCCCccCcCCC-CCCCCCCCCCcccccc-cCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNL-VPRAGRSRNPLLDVSL-SQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~-~~~~gl~~gdil~v~~-~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.+++... .-++.|..||++.| + .++|.    .||+++..+     .+.|++|+...
T Consensus        16 ~~~~~~Alydy---~~~~~~~~~~~~eLsf~~Gd~i~v-~~~~~~~----gWw~g~~~~-----g~~G~~Psnyv   77 (96)
T 1wie_A           16 KVHLCVARYSY---NPFDGPNENPEAELPLTAGKYLYV-YGDMDED----GFYEGELLD-----GQRGLVPSNFV   77 (96)
T ss_dssp             CEEEEEESSCC---CGGGSSCSCTTTBCCCCTTCEEEE-ESSCCSS----SCCEEEETT-----CCBCBCCTTSE
T ss_pred             CCcEEEECCcc---CCCcccCCCCCCeeeECCCCEEEE-eEecCCC----CEEEEEECC-----CCEEEEchHHE
Confidence            45689999999   544421111 23566779999999 6 54554    799997432     47899999754

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.58  E-value=0.0013  Score=53.72  Aligned_cols=54  Identities=15%  Similarity=0.041  Sum_probs=39.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccC--CCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQ--LDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~--~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...|++|+++|   .+.++     .++.|.+||++.| +.+  .+.    .||.++.   +   .+.|++|+...
T Consensus         7 ~~~~~~al~dy---~~~~~-----~eLsf~~Gd~i~v-~~~~~~~~----~Ww~g~~---~---g~~G~fP~~yv   62 (85)
T 2dlp_A            7 GSGYVIALRSY---ITDNC-----SLLSFHRGDLIKL-LPVATLEP----GWQFGSA---G---GRSGLFPADIV   62 (85)
T ss_dssp             CCCEEEESSCB---CCSSS-----SBCCBCTTCEEEE-CCCSCCCT----TEEEEES---S---SCEEEEETTSE
T ss_pred             CCEEEEECCCC---CccCc-----CCccCcCCCEEEE-EEccCCCC----CeEEEEE---C---CEEEEechHHe
Confidence            46789999999   33322     3567889999999 654  443    7999965   2   38999999753

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=96.57  E-value=0.0014  Score=68.57  Aligned_cols=59  Identities=14%  Similarity=0.335  Sum_probs=50.8

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCC-----------CCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAE-----------GDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~-----------GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+||++           ||+|++|||+++.  +.+++...|..  .++.++|+|.|++.
T Consensus       251 ~Gv~V~~V~~~----spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~  322 (348)
T 3qo6_A          251 SGVLVLDAPPS----GPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCKVGDEVTVEVLRGDH  322 (348)
T ss_dssp             SSEEEEECCSS----SHHHHHTCCCCEECSSSCEECCCEECEETTBCCS--SSHHHHHHHTTCCTTCEEEEEEECSSS
T ss_pred             ceEEEEEecCC----ChHHHcCCccccccccCCCCCCCEEEEECCEEeC--CHHHHHHHHHhCCCcCEEEEEEEECCE
Confidence            58999999876    5667788998           9999999999999  77999999965  35799999999764

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=96.56  E-value=0.0015  Score=50.54  Aligned_cols=51  Identities=10%  Similarity=-0.007  Sum_probs=37.2

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      +++|+++|   .+.++     .++.|..||++.| +.+.+.    .||.++.   +   .+.|++|+...
T Consensus         3 ~~~Alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----gWw~g~~---~---g~~G~fP~~yv   53 (65)
T 2fei_A            3 QCKVLFEY---IPQNE-----DELELKVGDIIDI-NEEVEE----GWWSGTL---N---NKLGLFPSNFV   53 (65)
T ss_dssp             EEECSSCC---CCCST-----TBCCCCTTCEEEC-CCCSSS----SEEEEES---S---SCEEEEETTTS
T ss_pred             EEEECccC---CcCCc-----CccCCCCCCEEEE-EEecCC----CEEEEEE---C---CcEEEecHHHE
Confidence            67899999   33322     2567889999999 665554    7999964   2   48999999753

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.53  E-value=0.0017  Score=50.58  Aligned_cols=53  Identities=13%  Similarity=-0.066  Sum_probs=38.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...|++|+++|   .+.++     .++.|.+||++.| +.+.|.    .||.+..   +   .+.|++|+..
T Consensus         6 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   58 (68)
T 2dmo_A            6 SGEAHRVLFGF---VPETK-----EELQVMPGNIVFV-LKKGND----NWATVMF---N---GQKGLVPCNY   58 (68)
T ss_dssp             CSEEEEECSSC---CCCSS-----SSCCCCTTCEEEE-CEECSS----SCEEEEE---T---TEEEEECSTT
T ss_pred             CCCEEEECcCC---CcCCc-----CCCCCCCCCEEEE-EEeCCC----CEEEEEe---C---CCEEEeehHH
Confidence            35689999999   33322     2567889999999 665554    7998843   2   4889999974

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=96.52  E-value=0.0004  Score=72.10  Aligned_cols=59  Identities=22%  Similarity=0.381  Sum_probs=0.0

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +.+++..+++. +..++|+|.|++..
T Consensus       254 ~g~~V~~v~~~----spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~  312 (332)
T 3num_A          254 SGAYIIEVIPD----TPAEAGGLKENDVIISINGQSVV--SANDVSDVIKR-ESTLNMVVRRGNED  312 (332)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CceEEEEeccC----CChHHcCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEE
Confidence            58899999886    46677899999999999999998  78888888876 67899999997653

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.49  E-value=0.0017  Score=49.55  Aligned_cols=52  Identities=15%  Similarity=0.063  Sum_probs=37.9

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..+++|+++|.+   .++     .++.|.+||++.| +...|.    .||.++.   +   .+.|++|+..
T Consensus         5 ~~~~~al~dy~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   56 (62)
T 1k4u_S            5 GSQVEALFSYEA---TQP-----EDLEFQEGDIILV-LSKVNE----EWLEGES---K---GKVGIFPKVF   56 (62)
T ss_dssp             CEEEECCSCBCC---CSS-----SBCCBCSSCEEEE-EEESSS----SCEEEEC---S---SCEEEECGGG
T ss_pred             CeEEEECCCCCc---CCC-----CCccCCCCCEEEE-EEeCCC----CEEEEEE---C---CcEEEEeHHH
Confidence            567899999933   221     2567889999999 665444    7999973   2   4889999874

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=96.48  E-value=0.0013  Score=50.22  Aligned_cols=54  Identities=24%  Similarity=0.144  Sum_probs=39.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      +..+++|+++|   .+.++     .++.|.+||++.| +.++|     .||.++... +   .+.|++|+..
T Consensus         5 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~-----~Ww~g~~~~-~---g~~G~~P~~y   58 (62)
T 2iim_A            5 QDNLVIALHSY---EPSHD-----GDLGFEKGEQLRI-LEQSG-----EWWKAQSLT-T---GQEGFIPFNF   58 (62)
T ss_dssp             TTCEEEESSCB---CCCST-----TBCCBCTTCEEEE-EECCS-----SEEEEEETT-T---CCEEEEEGGG
T ss_pred             CCcEEEEcccC---CCCCC-----CCcCCCCCCEEEE-EEcCC-----CEEEEEECC-C---CCEEEEEHHH
Confidence            45688999999   33221     3567889999999 66654     699997642 2   4789999874

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.47  E-value=0.002  Score=52.15  Aligned_cols=54  Identities=7%  Similarity=-0.056  Sum_probs=39.5

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     -++.|.+||++.| +.++|.    .||.++..      .+.|++|+...
T Consensus         9 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~------g~~G~~P~~yv   62 (81)
T 2ysq_A            9 SIVSAEAVWDH---VTMAN-----RELAFKAGDVIKV-LDASNK----DWWWGQID------DEEGWFPASFV   62 (81)
T ss_dssp             CCEEEEESSCC---CCSSS-----SSCCCCTTCEEEE-EECCSS----SEEEEECS------SCEEEEEGGGE
T ss_pred             CceEEEEeeeE---CCCCC-----CcCCCCCCCEEEE-EEEcCc----CEEEEEEC------CCEEEechHHE
Confidence            46789999999   33221     2567789999999 666554    89999752      37899999753

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=96.47  E-value=0.0021  Score=71.84  Aligned_cols=65  Identities=17%  Similarity=0.308  Sum_probs=50.7

Q ss_pred             Ceeeee---CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         212 DFGIIL---GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       212 ~~gi~~---~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      .+|+..   +.|++|..|.++    ++|..+||++||+|++|||..+.   ..++..+++.  .+..++|+|.|++.
T Consensus       486 ~lG~~~~~~~~gv~V~~V~~~----spA~~AGL~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g~  555 (597)
T 4fgm_A          486 NFGAKYKASPQGLDVLNVYHD----ESAYHAGLSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRDE  555 (597)
T ss_dssp             CCSEEEEEETTEEEEEEECTT----SHHHHHTCCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETTE
T ss_pred             ccceEEeccCCeEEEEEeCCC----ChHHHCCCCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            456554   358999999876    56777899999999999999995   3455666664  56799999999764

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.46  E-value=0.002  Score=51.36  Aligned_cols=56  Identities=16%  Similarity=-0.027  Sum_probs=40.0

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.+      .++.|..||++.| +.+++.    .||+++.....  ..+.|++|+...
T Consensus        10 ~~~~~alydy---~~~~------~eLs~~~Gd~i~v-l~~~~~----gWw~g~~~~~~--~g~~G~~P~~yv   65 (75)
T 2egc_A           10 KDVYVSIADY---EGDE------ETAGFQEGVSMEV-LERNPN----GWWYCQILDGV--KPFKGWVPSNYL   65 (75)
T ss_dssp             CEEEEECSCB---CCCS------SSCCBCTTCEEEE-CEECTT----SEEEEEECCSS--SCEEEEEEGGGE
T ss_pred             CeEEEECCCc---CCCC------CcCCCCCCCEEEE-EEcCCC----CeEEEEeCCCC--CCcEEEEehHHC
Confidence            4568899999   3321      2567889999999 666654    79999876432  148999999754

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.45  E-value=0.0021  Score=51.71  Aligned_cols=58  Identities=17%  Similarity=0.005  Sum_probs=39.6

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.|......||.++.   +   .+.|++|+...
T Consensus        12 ~~~~~~Alydy---~~~~~-----~eLs~~~Gd~i~v-l~~~~~~~~~~Ww~g~~---~---g~~G~~P~~yv   69 (79)
T 1uhc_A           12 GNQVYFAVYTF---KARNP-----NELSVSANQKLKI-LEFKDVTGNTEWWLAEV---N---GKKGYVPSNYI   69 (79)
T ss_dssp             SSCCEEESSCB---CCCSS-----SBCCBCTTCEEEE-EESCCTTSCTTEEEEES---S---SCEEEEEGGGE
T ss_pred             CCeEEEECccC---CCCCC-----CccCCCCCCEEEE-EECCCCCCCCCeEEEEe---C---CCEEEEchHHe
Confidence            34578899999   33222     3567889999999 66654212237999963   2   37899999754

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.45  E-value=0.0024  Score=50.18  Aligned_cols=55  Identities=11%  Similarity=0.015  Sum_probs=38.7

Q ss_pred             ceeeCCCCCCCCCCC-ccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNL-LEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~-~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...++|+++|   .+ .++     .++.|.+||++.| +.+.|.    .||.++... +   .+.|++|+...
T Consensus         7 ~~~~~Alydy---~~~~~~-----~eLsf~~Gd~i~v-~~~~~~----~W~~g~~~~-~---g~~G~~P~~yv   62 (71)
T 2gqi_A            7 GRRVRAILPY---TKVPDT-----DEISFLKGDMFIV-HNELED----GWMWVTNLR-T---DEQGLIVEDLV   62 (71)
T ss_dssp             CCCEEESSCC---CCCTTS-----SCCCCCTTCBCCC-CEECSS----SCEEEECTT-T---CCEEEECTTSE
T ss_pred             CCEEEECccc---CCCCCC-----CCCCCCCCCEEEE-EEecCC----CEEEEEECC-C---CCEEEeeHHHE
Confidence            4568899999   43 221     2567889999999 665554    799997432 2   47899999743

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=96.44  E-value=0.00087  Score=58.76  Aligned_cols=56  Identities=14%  Similarity=0.054  Sum_probs=40.9

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .+|++|+++|   .+.++     .++.|..||++.| +.+.|.    .||.++..+.+   .+.|++|+...
T Consensus         3 ~~~~~Alydy---~a~~~-----~ELsf~~Gd~i~v-l~~~~~----~Ww~g~~~~~~---g~~G~~P~nyv   58 (120)
T 2kym_A            3 PLFAVTLYEF---KAERD-----DELDVSPGENLSI-CAHYDY----EWFIAKPINRL---GGPGLVPVSYV   58 (120)
T ss_dssp             CCEEEECSCB---CCCST-----TCCCBCTTCEEEE-EEEETT----TEEEEEESSSC---SCCCCEEGGGE
T ss_pred             CEEEEEcccC---CCCCC-----CccCCCCCCEEEE-EEecCC----CEEEEEECCCC---CCEEEEchHHE
Confidence            4789999999   33322     3567889999999 666554    79999764444   37899999754

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=96.44  E-value=0.0016  Score=50.82  Aligned_cols=54  Identities=15%  Similarity=0.028  Sum_probs=39.3

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|..||++.| +.+++     .||.++..  +   .+.|++|+...
T Consensus         6 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~-----~Ww~~~~~--~---g~~G~~P~~yv   59 (68)
T 1wxt_A            6 SGLKMQVLYEF---EARNP-----RELTVVQGEKLEV-LDHSK-----RWWLVKNE--A---GRSGYIPSNIL   59 (68)
T ss_dssp             CCEEEEESSCB---CCCSS-----SBCCBCTTCEEEE-EECSS-----SEEEEECT--T---SCEEEEEGGGE
T ss_pred             CCeEEEECceE---CCCCc-----CcCCCCCCCEEEE-EEcCC-----CEEEEEEC--C---CCEEEEEhHHc
Confidence            45779999999   33222     3567889999999 66653     79999763  2   48899999753

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=96.41  E-value=0.0013  Score=51.23  Aligned_cols=55  Identities=11%  Similarity=-0.014  Sum_probs=38.7

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...++||+++|   .+..++   ..++.|..||++.| +.+++.    .||.+..   +   .+.|++|+..
T Consensus         5 ~~~~~~alydy---~~~~~~---~~eLs~~~Gd~i~v-~~~~~~----gWw~g~~---~---g~~G~fP~~y   59 (67)
T 2eyx_A            5 GPIYARVIQKR---VPNAYD---KTALALEVGELVKV-TKINVS----GQWEGEC---N---GKRGHFPFTH   59 (67)
T ss_dssp             CSCBEEECCCB---CCCTTC---SSBCCBCSSEEEEE-EEECTT----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CCEEEEEeEEE---CCCCCC---CCccccCCCCEEEE-EEecCC----CEEEEEE---C---CCEEEEehHh
Confidence            35689999999   332111   12667889999999 665554    7999944   2   4899999974

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.40  E-value=0.0036  Score=49.87  Aligned_cols=55  Identities=13%  Similarity=0.024  Sum_probs=40.0

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ....+++|+++|   .+.++     .++.|.+||++.| +.+.+.    .||.++.   +   .+.|++|+...
T Consensus         8 ~~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   62 (76)
T 1ujy_A            8 SHQLIVKARFNF---KQTNE-----DELSVCKGDIIYV-TRVEEG----GWWEGTL---N---GRTGWFPSNYV   62 (76)
T ss_dssp             CCCEEEECCSCB---CCSST-----TSCCBCSSCCEEE-SSCCSS----SCEEEEE---T---TEEEEECTTTS
T ss_pred             CCCEEEEECccC---CcCCC-----CcccCCCCCEEEE-EEecCC----CEEEEEE---C---CCEEEechHHE
Confidence            346789999999   33221     3567889999999 665554    7999974   2   48999999754

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.39  E-value=0.0019  Score=50.27  Aligned_cols=54  Identities=9%  Similarity=-0.060  Sum_probs=39.1

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +...+.    .||.++.   +   .+.|++|+...
T Consensus         6 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   59 (68)
T 1x2k_A            6 SGKVFRALYTF---EPRTP-----DELYFEEGDIIYI-TDMSDT----NWWKGTS---K---GRTGLIPSNYV   59 (68)
T ss_dssp             CSEEEEESSCC---CCCST-----TBCCCCSSCEEEE-EECSCS----SEEEEES---S---SCEEEEETTTE
T ss_pred             CcEEEEECceE---CCCCC-----CcccCCCCCEEEE-EEcCCC----CEEEEEE---C---CcEEEEehHHe
Confidence            45678999999   33221     3567889999999 555544    7999975   2   47999999753

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=96.38  E-value=0.0036  Score=49.15  Aligned_cols=54  Identities=7%  Similarity=-0.095  Sum_probs=37.9

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCcccee-eeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQK-GIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~-GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|..||++.| +.+.+.    .||.++..   +   .. |++|+...
T Consensus         5 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~---g---~~gG~~P~~yv   59 (71)
T 1hsq_A            5 FKCAVKALFDY---KAQRE-----DELTFIKSAIIQN-VEKQEG----GWWRGDYG---G---KKQLWFPSNYV   59 (71)
T ss_dssp             SSSCCCCSSCC---CCSSS-----SSCCCCTTCCCBS-CCCBTT----TEECCBCS---S---SCSCCEETTTC
T ss_pred             CCeEEEECCCC---CcCCC-----CccCCCCCCEEEE-EEecCC----CEEEEEEC---C---eEEeEEChHHc
Confidence            35678999999   33322     2567889999999 666554    79999762   2   34 59999754

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.35  E-value=0.0039  Score=51.26  Aligned_cols=54  Identities=15%  Similarity=0.033  Sum_probs=39.7

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.|.    .||.++..      ...|++|+...
T Consensus        16 ~~~~~~Alydy---~~~~~-----~eLsf~~Gd~i~v-~~~~~~----~Ww~g~~~------g~~G~~P~~yv   69 (88)
T 1x2q_A           16 VARKVRALYDF---EAVED-----NELTFKHGEIIIV-LDDSDA----NWWKGENH------RGIGLFPSNFV   69 (88)
T ss_dssp             CCEEEEESSCC---CCCSS-----SCCCCCSSCEEEE-EECSCS----SSEEEEET------TEEEEECGGGE
T ss_pred             CCeEEEEcccC---CCCCc-----CccCCCCCCEEEE-EEeCCC----CEEEEEEC------CcEEEEehHHE
Confidence            45689999999   33322     3567889999999 665554    79999763      36899999754

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=96.35  E-value=0.0015  Score=50.10  Aligned_cols=53  Identities=13%  Similarity=0.016  Sum_probs=38.7

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|.+   .+     ..++.|.+||++.| +...+.    .||.++.   +   .+.|++|+..
T Consensus         5 ~~~~~~al~dy~~---~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   57 (64)
T 2ak5_A            5 SQLVVRAKFNFQQ---TN-----EDELSFSKGDVIHV-TRVEEG----GWWEGTH---N---GRTGWFPSNY   57 (64)
T ss_dssp             CCCEEEESSCBCC---CS-----TTBCCBCTTCEEEE-EECCTT----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CCEEEEEccccCC---cC-----cCcccCCCCCEEEE-eEecCC----CEEEEEE---C---CCEEEEehHH
Confidence            4578999999933   22     13567889999999 555544    7999975   2   4899999874

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=96.34  E-value=0.0015  Score=49.01  Aligned_cols=51  Identities=20%  Similarity=0.203  Sum_probs=37.1

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+++|+++|.+   .++     .++.|.+||++.| +...+.    .||.++.   +   .+.|++|+..
T Consensus         3 ~~~~al~dy~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   53 (58)
T 1sem_A            3 KFVQALFDFNP---QES-----GELAFKRGDVITL-INKDDP----NWWEGQL---N---NRRGIFPSNY   53 (58)
T ss_dssp             CEEEESSCBCC---SST-----TBCCBCTTCEEEE-EECSSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             eEEEECcCCCC---CCC-----CCcCCCCCCEEEE-EEecCC----CEEEEEE---C---CcEEEechHH
Confidence            46888999833   221     3567889999999 655544    7999976   2   4899999864

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=96.34  E-value=0.0031  Score=49.71  Aligned_cols=54  Identities=11%  Similarity=0.036  Sum_probs=39.1

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +..++     .||.++..+     .+.|++|+...
T Consensus         6 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~-----~Ww~g~~~~-----g~~G~~P~~yv   59 (72)
T 2jw4_A            6 EEVVVVAKFDY---VAQQE-----QELDIKKNERLWL-LDDSK-----SWWRVRNSM-----NKTGFVPSNYV   59 (72)
T ss_dssp             CCEEEECSSCC---CCSST-----TSCCCCTTCEEEE-EECSS-----SSEEEECTT-----SCEEEECTTSC
T ss_pred             CCeEEEECcCC---CcCCC-----CcccCCCCCEEEE-EECCC-----CEEEEEECC-----CCEEEEEhhHE
Confidence            35689999999   33221     3567889999999 65543     799997652     48899999754

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.32  E-value=0.0022  Score=50.01  Aligned_cols=54  Identities=17%  Similarity=0.087  Sum_probs=38.8

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.+     ..++.|..||++.| +.+++     .||.++..+     .+.|++|+...
T Consensus         6 ~~~~~~alydy---~~~~-----~~eLs~~~Gd~i~v-~~~~~-----~Ww~~~~~~-----g~~G~~P~~yv   59 (68)
T 1wxb_A            6 SGKYVKILYDF---TARN-----ANELSVLKDEVLEV-LEDGR-----QWWKLRSRS-----GQAGYVPCNIL   59 (68)
T ss_dssp             SCCCEECSSCB---CCSS-----SSBCCBCTTCEEEE-EECSS-----SEEEEECTT-----SCEEEEETTTC
T ss_pred             CCEEEEECccC---CCCC-----CCccCCCCCCEEEE-EEcCC-----CEEEEEECC-----CCEEEEEHHHe
Confidence            34578999999   3322     13567889999999 66543     799997632     48899999753

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=96.30  E-value=0.0014  Score=49.70  Aligned_cols=51  Identities=12%  Similarity=0.145  Sum_probs=36.4

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      +++|+++|.   +.++     .++.|..||++.| +..++     .||.++..+     .+.|++|+...
T Consensus         3 ~~~al~dy~---~~~~-----~eLs~~~Gd~i~v-~~~~~-----~Ww~~~~~~-----g~~G~~P~~yv   53 (60)
T 1i07_A            3 YAKSKYDFV---ARNS-----SELSVMKDDVLEI-LDDRR-----QWWKVRNAS-----GDSGFVPNNIL   53 (60)
T ss_dssp             EEEESSCBC---CSST-----TBCCBCTTCEEEE-CGGGC-----CEEEEECTT-----SCEEEEEGGGE
T ss_pred             EEEECccCC---CCCC-----CcccCCCCCEEEE-EEcCC-----CeEEEEECC-----CCEEEEEHHHe
Confidence            678888883   3221     2567789999999 65533     799997543     48899999753

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=96.30  E-value=0.0015  Score=49.04  Aligned_cols=51  Identities=24%  Similarity=0.217  Sum_probs=37.0

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+++|+++|.+   .+     ..++.|.+||++.| +...+.    .||.++.   +   .+.|++|+..
T Consensus         3 ~~~~al~dy~~---~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   53 (58)
T 2vwf_A            3 TYVQALFDFDP---QE-----DGELGFRRGDFIHV-MDNSDP----NWWKGAC---H---GQTGMFPRNY   53 (58)
T ss_dssp             CEEEESSCBCC---CS-----TTBCCBCTTCEEEE-EECCSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             eEEEECceECC---CC-----cCCcCCCCCCEEEE-EEcCCC----CEEEEEE---C---CcEEEEchHH
Confidence            46788899833   22     13567889999999 555443    7999976   2   4899999864

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=96.29  E-value=0.0017  Score=49.56  Aligned_cols=53  Identities=17%  Similarity=0.091  Sum_probs=38.1

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +...|.    .||.++..      ...|++|+...
T Consensus         5 ~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~------g~~G~~P~~yv   57 (62)
T 1uj0_A            5 ARRVRALYDF---EAVED-----NELTFKHGELITV-LDDSDA----NWWQGENH------RGTGLFPSNFV   57 (62)
T ss_dssp             CEEEEESSCB---CCCST-----TBCCBCTTCEEEE-EECCSS----SEEEEEET------TEEEEEEGGGE
T ss_pred             CeEEEECccC---CCCCc-----CCcCCCCCCEEEE-EEeCCC----CEEEEEEC------CCEEEechhHE
Confidence            4678999999   33221     3567889999999 555544    79999753      36899999753

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=96.28  E-value=0.0015  Score=51.00  Aligned_cols=53  Identities=9%  Similarity=-0.008  Sum_probs=38.3

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +...|.    .||.++.   +   .+.|++|+...
T Consensus         3 ~~~~~Alydy---~~~~~-----~eLsf~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   55 (68)
T 2ew3_A            3 QPCCRGLYDF---EPENQ-----GELGFKEGDIITL-TNQIDE----NWYEGMI---H---GESGFFPINYV   55 (68)
T ss_dssp             CCEEEESSCB---CCCST-----TBCCBCTTCEEEE-EEESSS----SEEEEEE---T---TEEEEEEGGGE
T ss_pred             CCEEEEeeeE---CCCCC-----CccCCCCCCEEEE-EEecCC----CEEEEEE---C---CcEEEeeHHHE
Confidence            3578899999   33222     2567889999999 665554    7999975   2   48999999754

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=96.28  E-value=0.0019  Score=50.96  Aligned_cols=56  Identities=11%  Similarity=-0.009  Sum_probs=40.1

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|.   +.+     ..++.|.+||++.| +.+.|.    .||.++... +   .+.|++|+...
T Consensus        14 ~~~~~~al~dy~---~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-~---g~~G~~P~~yv   69 (73)
T 3h0h_A           14 GVTLFVALYDYE---AIT-----EDDLSFHKGEKFQI-LNSSEG----DWWEARSLT-T---GETGYIPSNYV   69 (73)
T ss_dssp             TTCEEEESSCBC---CSS-----TTBCCBCTTCEEEE-EECSSS----SEEEEEETT-T---CCEEEEEGGGE
T ss_pred             CCEEEEECccCC---CCC-----CCcceEeCCCEEEE-EEecCC----CeEEEEECC-C---CCEEEEEHHHe
Confidence            356788999993   322     23567889999999 665554    799998752 2   37899998753

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.26  E-value=0.00092  Score=56.23  Aligned_cols=58  Identities=10%  Similarity=-0.031  Sum_probs=40.4

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCC---CCCCCCCCCcccccccC-CCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLV---PRAGRSRNPLLDVSLSQ-LDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~---~~~gl~~gdil~v~~~~-~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+..++..+|   .++.|.+||++.| +.+ ++.    .||+++.   +   .+.|+||+...
T Consensus        17 ~~~~~Alydy---~~~~~~~~~~~~~~eLsf~~Gd~i~v-l~~~~~~----gWw~g~~---~---g~~G~~P~~yv   78 (97)
T 2csq_A           17 ARIFVALFDY---DPLTMSPNPDAAEEELPFKEGQIIKV-YGDKDAD----GFYRGET---C---ARLGLIPCNMV   78 (97)
T ss_dssp             CEEEECSSCB---CTTTTSSCHHHHTTBCCBCTTCEEEE-EEEECTT----CEEEEEE---T---TEEEEEETTTS
T ss_pred             ceEEEEcccc---CCCcccccCCCCCCccCCCCCCEEEE-EEecCCC----CeEEEEE---C---CcEEEEehHHe
Confidence            4578999999   5543333322   3567779999999 643 332    5999976   2   48999999754

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=96.25  E-value=0.0031  Score=49.22  Aligned_cols=54  Identities=11%  Similarity=0.020  Sum_probs=38.6

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..-+++|+++|   .+.++     .++.|..||++.| +.+.+.    .||.++..      .+.|++|+...
T Consensus         7 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~------g~~G~~P~~yv   60 (69)
T 2dil_A            7 GAQEYRALYDY---TAQNP-----DELDLSAGDILEV-ILEGED----GWWTVERN------GQRGFVPGSYL   60 (69)
T ss_dssp             CCCEEECCSCB---CCSSS-----SSCCBCTTCEEEE-EECCSS----SEEEEEET------TEEEEEEGGGC
T ss_pred             CCcEEEECccC---CccCc-----CccCCCCCCEEEE-EECCCC----CEEEEEEC------CCEEEEehHHe
Confidence            34578899999   33221     3567889999999 655443    79999762      48999999753

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=96.25  E-value=0.0028  Score=50.18  Aligned_cols=53  Identities=11%  Similarity=-0.051  Sum_probs=37.1

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .++||+++|.+. +.+     .-++.|..||++.| +.+.|.    .||.++.   +   .+.|++|+..
T Consensus        10 ~~~~alydy~~~-~~~-----~~eLs~~~Gd~i~v-~~~~~~----gWw~g~~---~---g~~G~fP~~y   62 (73)
T 2ebp_A           10 GRARVHTDFTPS-PYD-----TDSLKLKKGDIIDI-ISKPPM----GTWMGLL---N---NKVGTFKFIY   62 (73)
T ss_dssp             EEEEECSCBCCC-TTC-----CSBCCBCSSCEEEE-EECCSS----SCEEEEC---S---SCEEEECSTT
T ss_pred             eEEEEeeccCCC-CCC-----CCccCCCCCCEEEE-EEeCCC----CeEEEEE---C---CCEEEEeHHH
Confidence            478999999331 001     13567889999999 666554    7999954   2   3789999974

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.24  E-value=0.0027  Score=49.47  Aligned_cols=53  Identities=8%  Similarity=-0.091  Sum_probs=38.3

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.+     ..++.|.+||++.| +.+.|.    .||.++.   +   .+.|++|+..
T Consensus         6 ~~~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   58 (68)
T 2dl4_A            6 SGNTYVALYKF---VPQE-----NEDLEMRPGDIITL-LEDSNE----DWWKGKI---Q---DRIGFFPANF   58 (68)
T ss_dssp             CCCEEEESSCC---CCSS-----TTBCCCCTTCEEEE-EECCCS----SEEEEEC---S---SCEEEEETTT
T ss_pred             CCCEEEEeeeE---CCCC-----cCCcCCCCCCEEEE-EEeCCC----CEEEEEE---C---CcEEEEehHH
Confidence            34578899999   3322     13567889999999 665544    7999974   2   3799999974

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.21  E-value=0.0038  Score=48.94  Aligned_cols=54  Identities=9%  Similarity=-0.069  Sum_probs=38.8

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|..||++.| +.+++.    .||.++..      .+.|++|+...
T Consensus         7 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~------g~~G~~P~~yv   60 (71)
T 2dnu_A            7 GEEKYVTVQPY---TSQSK-----DEIGFEKGVTVEV-IRKNLE----GWWYIRYL------GKEGWAPASYL   60 (71)
T ss_dssp             CSEEEECSSCB---CCSST-----TBCCBCTTCEEEE-CCCCSS----SEEEEEET------TEEEEEEGGGC
T ss_pred             CCCEEEECCcc---CCCCC-----CCCcCCCCCEEEE-eECCCC----CeEEEEEC------CcEEEEEHHHe
Confidence            34568899999   33221     3567789999999 665544    79999764      37899999754

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.21  E-value=0.0037  Score=49.30  Aligned_cols=53  Identities=11%  Similarity=0.004  Sum_probs=37.5

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCccccccc-CCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLS-QLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~-~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +. ..|.    .||.++.   +   .+.|++|+...
T Consensus        10 ~~~~~alydy---~~~~~-----~eLsf~~Gd~i~v-~~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   63 (72)
T 1ugv_A           10 FRKAKALYAC---KAEHD-----SELSFTAGTVFDN-VHPSQEP----GWLEGTL---N---GKTGLIPENYV   63 (72)
T ss_dssp             CCCEEESSCB---CCCSS-----SBCCBCTTCEEBS-CCBCSST----TEEEEES---S---SCEEEEEGGGE
T ss_pred             ccEEEEcccc---CCcCC-----CEeCCcCCCEEEE-EEecCCC----CeEEEEE---C---CcEEEecHHHE
Confidence            4579999999   33322     3567889999998 54 2333    7999963   2   47899999743

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.21  E-value=0.0019  Score=52.76  Aligned_cols=55  Identities=11%  Similarity=0.000  Sum_probs=40.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.++|.    .||.++..+     .+.|+||+...
T Consensus        18 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~~-----g~~G~~P~~yv   72 (85)
T 2yuq_A           18 EETVVIALYDY---QTNDP-----QELALRRNEEYCL-LDSSEI----HWWRVQDRN-----GHEGYVPSSYL   72 (85)
T ss_dssp             SSCEEEESSCC---CCSCS-----SBCCCCBTEEEEE-EECCSS----SEEEEECSS-----SCEEEEETTTC
T ss_pred             CCeEEEECcCC---CCCCC-----CcCCCCCCCEEEE-EEecCC----CeEEEEECC-----CCEEEEehHHe
Confidence            35688999999   33322     2567889999999 666554    799997532     38899999754

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=96.20  E-value=0.002  Score=50.41  Aligned_cols=56  Identities=13%  Similarity=-0.003  Sum_probs=39.6

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|.+   .++     .++.|.+||++.| +.+.|.    .||.++..+ .   .+.|++|+...
T Consensus         6 ~~~~~~al~dy~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-~---g~~G~~P~~yv   61 (70)
T 2ecz_A            6 SGGEAIAKFNFNG---DTQ-----VEMSFRKGERITL-LRQVDE----NWYEGRIPG-T---SRQGIFPITYV   61 (70)
T ss_dssp             CCBCEEESSCCCC---CST-----TBCCCCTTCBCEE-EEEEET----TEEEEEETT-T---TEEEEECTTTE
T ss_pred             CCCEEEECccCCC---CCc-----CCcCCCCCCEEEE-EEecCC----CeEEEEECC-C---CCEEEEchHHE
Confidence            3567899999933   221     2567889999999 555443    799997654 1   48999999743

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=96.20  E-value=0.0018  Score=50.30  Aligned_cols=53  Identities=15%  Similarity=-0.068  Sum_probs=37.8

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .+++|+++|   .+.+     ..++.|.+||++.| +.+.|.    .||.++..+     .+.|++|+...
T Consensus         3 ~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-----g~~G~~P~~yv   55 (67)
T 1gl5_A            3 EIVVAMYDF---QATE-----AHDLRLERGQEYII-LEKNDL----HWWRARDKY-----GSEGYIPSNYV   55 (67)
T ss_dssp             SCEEECSCB---CCSS-----SSBCCBCTTCEEEE-EECSSS----SEEEEECSS-----SCEEEEETTSE
T ss_pred             eEEEECccC---CCCC-----CCeecCCcCCEEEE-EEccCC----CcEEEEECC-----CCEEEEEhHhE
Confidence            357888888   3322     13567889999999 666554    899997542     37999999754

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=96.19  E-value=0.0019  Score=50.38  Aligned_cols=52  Identities=13%  Similarity=0.058  Sum_probs=37.7

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCC---CCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQL---DRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~---d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .++++|+++|   .+.++     .++.|.+||++.| +.+.   +.    .||.++.   +   .+.|++|+..
T Consensus         3 ~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~~~~----~Ww~g~~---~---g~~G~~P~~y   57 (69)
T 1wyx_A            3 NVLAKALYDN---VAESP-----DELSFRKGDIMTV-LEQDTQGLD----GWWLCSL---H---GRQGIVPGNR   57 (69)
T ss_dssp             EEEEEESSCB---CCSST-----TBCCBCTTCEEEE-EETTGGGCT----TEEEEEE---T---TEEEEEEGGG
T ss_pred             CEEEEECccC---CcCCC-----CccCCcCCCEEEE-eECCCCCCC----CcEEEEE---C---CcEEEechhh
Confidence            4678999999   33221     3567889999999 5554   33    7999974   2   4799999974

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=96.19  E-value=0.004  Score=48.78  Aligned_cols=57  Identities=12%  Similarity=0.031  Sum_probs=37.7

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCC-CCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDR-PVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~-~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ++.+|.++|   .+.+.+    -++.|.+||++.| +.+.|. .....||+++..+     .+.|++|+..
T Consensus         8 ~~~~aly~y---~a~~~~----dELsf~~Gd~i~V-l~~~~~~~~~~gWW~g~~~~-----G~~G~~Psny   65 (69)
T 1nm7_A            8 HFARALYDF---VPENPE----MEVALKKGDLMAI-LSKKDPLGRDSDWWKVRTKN-----GNIGYIPYNY   65 (69)
T ss_dssp             -CEEECSCC---CCSSTT----SCCCCCTTCEEEE-CCSSSSSCCSSSCEEEEETT-----TEEEEECGGG
T ss_pred             eEEEEEecc---cCCCCC----CccCCCCCCEEEE-EecCCCCCCCCCeeEEEeCC-----CCEEEecHHH
Confidence            567888888   333211    1567889999999 665541 1223799997642     4799999974

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.17  E-value=0.0035  Score=49.52  Aligned_cols=57  Identities=11%  Similarity=0.028  Sum_probs=38.2

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.+ .....||.++.   +   .+.|++|+...
T Consensus         7 ~~~~~~alydy---~~~~~-----~eLsf~~Gd~i~v-~~~~~-~~~~~Ww~g~~---~---g~~G~~P~~yv   63 (73)
T 2dl7_A            7 GVCFVKALYDY---EGQTD-----DELSFPEGAIIRI-LNKEN-QDDDGFWEGEF---N---GRIGVFPSVLV   63 (73)
T ss_dssp             CCEEEEESSCB---CCSST-----TBCCBCTTCEEEE-EECCC-SSSSSCEEEEE---T---TEEEEECSSSE
T ss_pred             CCEEEEECccC---CcCCC-----CcCCCCCCCEEEE-EECCC-CCCCCcEEEEE---C---CCEEEEChHHE
Confidence            45689999999   33221     3567789999999 55420 01127999973   2   48899999743

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=96.17  E-value=0.0032  Score=49.78  Aligned_cols=54  Identities=11%  Similarity=0.060  Sum_probs=39.1

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|.+   .++     .++.|.+||++.| +...|.    .||.++.   +   .+.|++|+...
T Consensus         6 ~~~~~~al~dy~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   59 (73)
T 2dbm_A            6 SGPCCRALYDFEP---ENE-----GELGFKEGDIITL-TNQIDE----NWYEGML---H---GHSGFFPINYV   59 (73)
T ss_dssp             CCCEEEESSCBCC---CST-----TCCCBCTTCEEEC-CBCSSS----SEEEEEE---T---TEEEEEESSSE
T ss_pred             CCCEEEEccccCC---CCC-----CCccCCCCCEEEE-EEecCC----CEEEEEE---C---CCEEEechHHE
Confidence            4568899999933   221     2567889999999 665554    7999975   2   48999999743

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=96.16  E-value=0.0022  Score=68.24  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=46.3

Q ss_pred             EEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       221 i~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ++|..|.+|    ++|..+||++||+|++|||+++.+++   +..+++..+..++|.|.|++..
T Consensus        92 ~~V~~V~~g----sPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~~  148 (403)
T 3k50_A           92 ALISYVVPG----SPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVVG  148 (403)
T ss_dssp             EEEEEECTT----SHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC-
T ss_pred             EEEEEeCCC----ChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCcc
Confidence            789999887    56777899999999999999999764   5566666566899999997643

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.12  E-value=0.0031  Score=50.62  Aligned_cols=55  Identities=15%  Similarity=0.012  Sum_probs=39.8

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCC-CCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLD-RPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d-~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.| .    .||.++...     .+.|++|+...
T Consensus        12 ~~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~~----~Ww~g~~~~-----g~~G~~P~~yv   67 (78)
T 2dl5_A           12 YPLTCKVVYSY---KASQP-----DELTIEEHEVLEV-IEDGDME----DWVKARNKV-----GQVGYVPEKYL   67 (78)
T ss_dssp             SSEEEEECSCB---CCCST-----TBCCBCSSEEEEE-EECCSSS----SEEEEECTT-----CCEEEEETTTS
T ss_pred             CCcEEEEceeE---CCCCC-----CCCCCCCCCEEEE-EeccCCC----CcEEEEeCC-----CCEEEEEhHHE
Confidence            45789999999   33222     2567889999999 66543 3    799997642     37899999754

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=96.12  E-value=0.0026  Score=49.17  Aligned_cols=51  Identities=8%  Similarity=0.007  Sum_probs=36.4

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      +++|+++|   .+.++     .++.|.+||++.| +.+.|.    .||.++.   +   .+.|++|+...
T Consensus         3 ~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~fP~~yv   53 (65)
T 2nwm_A            3 AARLKFDF---QAQSP-----KELTLQKGDIVYI-HKEVDK----NWLEGEH---H---GRLGIFPANYV   53 (65)
T ss_dssp             EEEECSCB---CCCST-----TBCCBCTTCEEEE-EECCTT----TCEEEEE---T---TEEEEECGGGE
T ss_pred             EEEEeeeE---CCCCc-----CccCCcCCCEEEE-EEecCC----CEEEEEE---C---CcEEEEehhhE
Confidence            57888888   33221     2567889999999 665554    7999973   2   48999999753

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=96.12  E-value=0.0022  Score=48.22  Aligned_cols=52  Identities=12%  Similarity=-0.021  Sum_probs=37.3

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .+++|+++|.+   .+     ..++.|.+||++.| +...+.    .||.++.   +   .+.|++|+...
T Consensus         4 ~~~~al~dy~~---~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   55 (58)
T 1zlm_A            4 KVFRALYTFEP---RT-----PDELYFEEGDIIYI-TDMSDT----NWWKGTS---K---GRTGLIPSNYV   55 (58)
T ss_dssp             EEEEESSCBCC---SS-----TTBCCBCTTCEEEE-EECCSS----SEEEEEE---T---TEEEEEEGGGE
T ss_pred             EEEEECccCCC---CC-----CCCccCCCCCEEEE-EEeCCC----CEEEEEE---C---CCEEEEehHHE
Confidence            46888999833   22     13567889999999 555443    7999975   2   48999999753

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=96.11  E-value=0.0023  Score=48.21  Aligned_cols=52  Identities=12%  Similarity=-0.024  Sum_probs=37.4

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..+++|+++|   .+.+     ..++.|.+||++.| +.++|.    .||.++.   +   .+.|++|+..
T Consensus         4 ~~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   55 (59)
T 2g6f_X            4 GSVVRAKFNF---QQTN-----EDELSFSKGDVIHV-TRVEEG----GWWEGTH---N---GRTGWFPSNY   55 (59)
T ss_dssp             CCEEEESSCB---CCSS-----TTBCCBCTTCEEEE-EEECTT----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CcEEEECcee---CCCC-----cCCcCCCCCCEEEE-EEecCC----CEEEEEE---C---CcEEEEeHHH
Confidence            3478899999   3322     13567889999999 555544    7999975   2   4899999874

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0028  Score=49.67  Aligned_cols=55  Identities=15%  Similarity=0.022  Sum_probs=38.6

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .++++|+++|   .+..++   ..++.|.+||++.| +..++     .||.++..+     .+.|++|+...
T Consensus         5 ~~~~~alydy---~~~~~~---~~eLsf~~Gd~i~v-~~~~~-----~Ww~g~~~~-----g~~G~~P~~yv   59 (70)
T 2vkn_A            5 IYKAKALYPY---DADDDD---AYEISFEQNEILQV-SDIEG-----RWWKARRAN-----GETGIIPSNYV   59 (70)
T ss_dssp             EEEEEESSCB---CCCSSS---TTBCCBCTTCEEEE-ECTTS-----SEEEEECTT-----SCEEEEEGGGE
T ss_pred             CEEEEECccC---CCCCCC---CCcccCCCCCEEEE-EEcCC-----CeEEEEECC-----CCEEEEehHHE
Confidence            4678999999   333221   12567889999999 55433     799997652     48999999753

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=96.10  E-value=0.002  Score=48.39  Aligned_cols=51  Identities=20%  Similarity=0.188  Sum_probs=36.6

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+++|+++|.+   .+     ..++.|.+||++.| +.+.+.    .||.++.   +   .+.|++|+..
T Consensus         3 ~~~~al~dy~~---~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   53 (58)
T 1zx6_A            3 EYVEALYQFDP---QQ-----DGDLGLKPGDKVQL-LEKLSP----EWYKGSC---N---GRTGIFPANY   53 (58)
T ss_dssp             CEEEECSCBCC---CS-----TTBCCBCTTCEEEE-EEECSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             eEEEECceECC---CC-----CCCccCCCCCEEEE-EEecCC----CEEEEEE---C---CcEEEeeHHH
Confidence            36788899833   22     13567889999999 555443    7999975   2   4899999874

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.10  E-value=0.0024  Score=50.36  Aligned_cols=55  Identities=9%  Similarity=-0.078  Sum_probs=39.7

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...++++|+++|   .+.+     ..++.|.+||++.| +.+.+.    .||.++.   +   .+.|++|+...
T Consensus         7 ~~~~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   61 (72)
T 2dl8_A            7 GEPIEAIAKFDY---VGRT-----ARELSFKKGASLLL-YQRASD----DWWEGRH---N---GIDGLIPHQYI   61 (72)
T ss_dssp             CSCEEEEESSCB---CCSS-----SSBCCBCTTCEEEE-EEEEET----TEEEEEE---T---TEEEEECSSSE
T ss_pred             CCCEEEEECccC---CcCC-----CCEeccCCCCEEEE-EeecCC----CEEEEEE---C---CEEEEEchHHe
Confidence            346789999999   3322     13567889999999 555443    7999976   2   48999999743

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=96.10  E-value=0.0021  Score=48.66  Aligned_cols=52  Identities=10%  Similarity=-0.030  Sum_probs=37.5

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..+++|+++|   .+.++     .++.|..||++.| +...|.    .||.++.   +   .+.|++|+..
T Consensus         4 ~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~W~~g~~---~---g~~G~~P~~y   55 (60)
T 1w70_A            4 HMRAEALFDF---TGNSK-----LELNFKAGDVIFL-LSRINK----DWLEGTV---R---GATGIFPLSF   55 (60)
T ss_dssp             SCEEEESSCB---CCSST-----TBCCBCTTCEEEE-EEECSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CcEEEECccC---CcCCC-----CCccCCCCCEEEE-EEeCCC----CeEEEEE---C---CCEEEechHH
Confidence            4578899999   33222     3567889999999 555544    7999974   2   4899999874

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.09  E-value=0.0033  Score=49.31  Aligned_cols=56  Identities=18%  Similarity=0.065  Sum_probs=38.1

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.+     ..++.|.+||++.| +...+ .....||.++.   +   .+.|++|+..
T Consensus         6 ~~~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~-~~~~~Ww~g~~---~---g~~G~~P~~y   61 (71)
T 2cre_A            6 SGLLARALYDN---CPDC-----SDELAFSRGDILTI-LEQHV-PESEGWWKCLL---H---GRQGLAPANR   61 (71)
T ss_dssp             CCEEEEESSCC---CCSS-----SSBCCCCSSCCEEE-EESCC-TTSTTEEEEES---S---SCCEEEETTT
T ss_pred             CcEEEEECccc---CcCC-----CCCCCCCCCCEEEE-eEcCC-CCCCCcEEEEE---C---CCEEEEehHH
Confidence            46789999999   3322     12567889999999 55530 00127999973   2   3789999974

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=96.09  E-value=0.0022  Score=48.22  Aligned_cols=52  Identities=12%  Similarity=-0.023  Sum_probs=36.5

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      +++|+++|   .+.+     ..++.|.+||++.| +.+.|.    .||.++... +   .+.|++|+..
T Consensus         2 ~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-~---g~~G~~P~~y   53 (58)
T 1jo8_A            2 WATAEYDY---DAAE-----DNELTFVENDKIIN-IEFVDD----DWWLGELEK-D---GSKGLFPSNY   53 (58)
T ss_dssp             CEEESSCB---CCCS-----TTBCCBCTTCEEEE-EECCSS----SEEEEEETT-T---CCEEEEEGGG
T ss_pred             EEEECceE---CCCC-----CCCcccCCCCEEEE-EEecCC----CcEEEEECC-C---CCEEEechHH
Confidence            46788888   3322     13567889999999 665544    799997642 2   4889999874

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=96.09  E-value=0.0023  Score=48.05  Aligned_cols=50  Identities=14%  Similarity=0.121  Sum_probs=36.4

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      |++|+++|.+   .+     ..++.|.+||++.| +.+.|.    .||.++.   +   .+.|++|+..
T Consensus         3 ~~~al~dy~~---~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   52 (58)
T 1uti_A            3 WARALYDFEA---LE-----EDELGFRSGEVVEV-LDSSNP----SWWTGRL---H---NKLGLFPANY   52 (58)
T ss_dssp             EEEESSCBCC---CS-----TTBCCBCTTCEEEE-EECCSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             EEEECccCCC---CC-----cCCCCCCCCCEEEE-EEECCC----CEEEEEE---C---CeEEEeeHHH
Confidence            6788888833   22     23667889999999 555443    7999975   2   4899999874

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.07  E-value=0.0046  Score=48.36  Aligned_cols=53  Identities=9%  Similarity=-0.030  Sum_probs=37.6

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .-.++|+++|   .+.+     ..++.|..||++.| +.+++.    .||.++..      .+.|++|+...
T Consensus         8 ~~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~------g~~G~~P~~yv   60 (70)
T 2ega_A            8 LEQYVVVSNY---KKQE-----NSELSLQAGEVVDV-IEKNES----GWWFVSTS------EEQGWVPATYL   60 (70)
T ss_dssp             CBCEECCSCC---CCCS-----SSSCCCCTTCBCEE-EEECTT----SEEEEECS------SCEEEEEGGGC
T ss_pred             CcEEEECceE---CCCC-----CCcccCCCCCEEEE-EEccCC----CeEEEEEC------CCEEEEehHHc
Confidence            3458899999   3322     13567889999999 665554    79999642      38899999753

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=96.06  E-value=0.0037  Score=48.60  Aligned_cols=54  Identities=13%  Similarity=0.006  Sum_probs=39.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.|.    .||.++.   +   .+.|++|+...
T Consensus         6 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   59 (68)
T 2djq_A            6 SGPRAKALCNY---RGKNP-----GDLKFNKGDVILL-RRQLDE----NWYQGEI---N---GVSGIFPASSV   59 (68)
T ss_dssp             SCCEEEECSCC---CSCCT-----TCCCCCTTCEEEE-EECCCS----SEEEEEE---T---TEEEEEESSSE
T ss_pred             CceEEEECCCC---CCCCc-----CCccCCCCCEEEE-EEecCC----CEEEEEE---C---CcEEEeehHHE
Confidence            45688999999   33221     2567889999999 666554    7999974   2   48999999743

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=96.05  E-value=0.0024  Score=50.52  Aligned_cols=53  Identities=15%  Similarity=0.067  Sum_probs=38.1

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +...|.    .||.++..      ...|++|+..
T Consensus        16 ~~~~~~Alydy---~a~~~-----~eLsf~~Gd~i~V-l~~~~~----gWw~g~~~------g~~G~fP~~y   68 (72)
T 2l0a_A           16 EARKVRAIYDF---EAAED-----NELTFKAGEIITV-LDDSDP----NWWKGETH------QGIGLFPSNF   68 (72)
T ss_dssp             CCEEEEESSCB---CCSST-----TBCCBCTTCEEEE-EEEEET----TEEEEECS------SCEEECTTCC
T ss_pred             CCeEEEECCcc---CCCCC-----CccCCCCCCEEEE-EEecCC----CEEEEEEC------CCEEEechhh
Confidence            45679999999   33322     3567889999999 555443    79999652      2589999864

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=96.04  E-value=0.0028  Score=47.52  Aligned_cols=52  Identities=10%  Similarity=-0.054  Sum_probs=37.6

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..+++|+++|.+   .++     .++.|.+||++.| +.+++.    .||.++.   +   .+.|++|+..
T Consensus         3 ~~~~~al~dy~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~W~~g~~---~---g~~G~~P~~y   54 (58)
T 2drm_A            3 GIQVKALYDYDA---QTG-----DELTFKEGDTIIV-HQKDPA----GWWEGEL---N---GKRGWVPANY   54 (58)
T ss_dssp             CEEEEESSCBCC---CST-----TBCCBCTTCEEEE-EECCTT----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CcEEEECccCCC---CCc-----CCcCCCCCCEEEE-EEecCC----CEEEEEE---C---CcEEEEeHHH
Confidence            356889999933   221     3567789999999 665544    7999976   2   4899999874

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=96.03  E-value=0.0017  Score=49.21  Aligned_cols=53  Identities=8%  Similarity=-0.068  Sum_probs=38.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.+.    .||.++.   +   .+.|++|+..
T Consensus         5 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   57 (60)
T 2gnc_A            5 SPEFAIAKFDY---VGRSA-----RELSFKKGASLLL-YHRASE----DWWEGRH---N---GIDGLVPHQY   57 (60)
T ss_dssp             -CEEEEESSCB---CCSST-----TBCCBCTTCEEEE-EEEEET----TEEEEEE---T---TEEEEEEGGG
T ss_pred             CCEEEEECCCC---CcCCc-----CCcCCCCCCEEEE-EEecCC----CEEEEEE---C---CeEEEEeHhh
Confidence            35788999999   33221     2567789999999 665443    7999976   2   4899999864

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=96.02  E-value=0.0037  Score=50.39  Aligned_cols=53  Identities=9%  Similarity=-0.072  Sum_probs=38.7

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.++     .++.|..||++.| +.+.|.    .||.++.   +   .+.|++|+..
T Consensus        17 ~~~~~~Alydy---~a~~~-----~eLsf~~Gd~I~V-l~~~~~----gWw~g~~---~---g~~G~fP~ny   69 (79)
T 1z9q_A           17 AAPRAEALFDF---TGNSK-----LELNFKAGDVIFL-LSRINK----DWLEGTV---R---GATGIFPLSF   69 (79)
T ss_dssp             SCCCEEESSCC---CCSST-----TBCCCCTTCCBCC-CEESSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CceEEEEcCcc---CCCCC-----CcccccCCCEEEE-eEecCC----CEEEEEE---C---CeEEEecHHH
Confidence            35678999999   33322     3567889999999 665554    7999974   2   4899999974

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=96.02  E-value=0.0027  Score=48.00  Aligned_cols=52  Identities=10%  Similarity=0.057  Sum_probs=37.7

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +.++|.    .||.++.   +   .+.|++|+..
T Consensus         5 ~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   56 (60)
T 2xmf_A            5 SPQCKALYAY---DAQDT-----DELSFNANDIIDI-IKEDPS----GWWTGRL---R---GKQGLFPNNY   56 (60)
T ss_dssp             SCEEEESSCB---CCSST-----TBCCBCTTCEEEE-EEECTT----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CcEEEECccC---CcCCc-----CCcCCCCCCEEEE-EEecCC----CEEEEEE---C---CEEEEEcHHH
Confidence            3568899999   33221     3567889999999 655544    7999976   2   4899999864

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=96.01  E-value=0.0035  Score=48.02  Aligned_cols=53  Identities=9%  Similarity=0.077  Sum_probs=37.5

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCC--CCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQL--DRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~--d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.++  |.    .||.++.   +   .+.|++|+..
T Consensus         5 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~~~----~W~~g~~---~---g~~G~~P~~y   59 (64)
T 2jte_A            5 AKEYCRTLFPY---TGTNE-----DELTFREGEIIHL-ISKETGEA----GWWKGEL---N---GKEGVFPDNF   59 (64)
T ss_dssp             SSEEEEESSCB---CCSSS-----SBCCBCTTCEEEE-EESCSSST----TEEEEEE---T---TEEEEEEGGG
T ss_pred             CCEEEEECccC---CccCC-----CccCCCCCCEEEE-EECCCCCC----CEEEEEE---C---CeEEEEeHHH
Confidence            35678999999   33221     2567889999999 5543  32    7999974   2   4899999864

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=96.00  E-value=0.0029  Score=49.63  Aligned_cols=54  Identities=13%  Similarity=0.054  Sum_probs=38.0

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccC--CCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQ--LDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~--~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +.+  .+.    .||.++..+     .+.|++|+...
T Consensus         6 ~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~~~----~Ww~g~~~~-----g~~G~~P~~yv   61 (71)
T 1u5s_A            6 LHVVQTLYPF---SSVTE-----EELNFEKGETMEV-IEKPENDP----EWWKCKNAR-----GQVGLVPKNYV   61 (71)
T ss_dssp             SSEEEESSCC---CCCSS-----SBCCCCSSCCEEE-EECCCTTT----CEEEEEETT-----TEEEEEETTSE
T ss_pred             cEEEEEcccC---CCCCC-----CcccCCCCCEEEE-EECCCCCC----CCEEEEeCC-----CCEEEEeHHHE
Confidence            3468899999   33221     2567889999999 665  333    799997532     48999999743

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=95.99  E-value=0.003  Score=48.51  Aligned_cols=53  Identities=8%  Similarity=-0.019  Sum_probs=38.2

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|.+   .++     .++.|.+||++.| +.+.|.    .||.++.   +   .+.|++|+..
T Consensus         8 ~~~~~~al~dy~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   60 (65)
T 3ulr_B            8 LGITAIALYDYQA---AGD-----DEISFDPDDIITN-IEMIDD----GWWRGVC---K---GRYGLFPANY   60 (65)
T ss_dssp             CCSCEEECSCBCC---CST-----TBCCBCTTCEEEE-EECCSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CceEEEEEeeECC---CCc-----CEeeEecCCEEEE-EEecCC----CEEEEEE---C---CcEEEEehHH
Confidence            3567899999933   221     2567789999999 666554    7999973   2   4889999864

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=95.98  E-value=0.0026  Score=49.77  Aligned_cols=52  Identities=12%  Similarity=0.068  Sum_probs=37.0

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCC--CCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQL--DRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~--d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .+++|+++|   .+.++     .++.|..||++.| +..+  +.    .||.++.   +   .+.|++|+...
T Consensus         3 ~~~~Alydy---~a~~~-----~eLs~~~Gd~i~v-l~~~~~~~----gWw~g~~---~---g~~G~~P~~yV   56 (69)
T 2ydl_A            3 DYCKVIFPY---EAQND-----DELTIKEGDIVTL-INKDCIDV----GWWEGEL---N---GRRGVFPDNFV   56 (69)
T ss_dssp             EEEEESSCB---CCCST-----TBCCBCTTCEEEE-EESCCSST----TEEEEEE---T---TEEEEEEGGGE
T ss_pred             cEEEEcccC---CCCCC-----CccccCCCCEEEE-EEcCCCCC----CEEEEEE---C---CcEEEecHHHE
Confidence            367889999   33322     3567889999999 6553  33    7999975   2   48999999753

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=95.97  E-value=0.0026  Score=49.45  Aligned_cols=53  Identities=11%  Similarity=0.022  Sum_probs=37.9

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +...+.    .||.++.   +   .+.|++|+..
T Consensus         6 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   58 (68)
T 1wi7_A            6 SGRRCQVAFSY---LPQND-----DELELKVGDIIEV-VGEVEE----GWWEGVL---N---GKTGMFPSNF   58 (68)
T ss_dssp             CCCCEEESSCB---CCSST-----TBCCBCTTCEECC-CEEEET----TEEEECS---T---TCCEEEETTS
T ss_pred             CCCEEEECccC---CcCCC-----CCccCcCCCEEEE-EEcCCC----CeEEEEE---C---CcEEEEchHH
Confidence            35678999999   33221     2567889999999 555443    7999974   2   4789999974

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.95  E-value=0.0036  Score=51.47  Aligned_cols=56  Identities=11%  Similarity=0.066  Sum_probs=39.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|.|. ..+     ..++.|..||++.| +.+.|.    .||.+..   +   .+.|++|+...
T Consensus        15 ~~~~~~alydy~~~-a~~-----~~eLsf~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~fP~~yv   70 (88)
T 2dbk_A           15 GPVFAKAIQKRVPC-AYD-----KTALALEVGDIVKV-TRMNIN----GQWEGEV---N---GRKGLFPFTHV   70 (88)
T ss_dssp             CCEEEEECSCBCCC-TTC-----SSBCCBCTTCEEEE-EEECTT----SCEEEEC---S---SCEEEECTTTE
T ss_pred             CCEEEEEcccccCC-CCC-----CCcccCCCCCEEEE-EEecCC----CEEEEEe---C---CCEEEEehHHe
Confidence            45789999999331 112     12567889999999 666554    7999844   2   47899999753

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.95  E-value=0.0046  Score=48.28  Aligned_cols=53  Identities=9%  Similarity=-0.139  Sum_probs=37.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.+     ..++.|.+||++.| +..++     .||.++.   +   .+.|++|+...
T Consensus         7 ~~~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~-----~Ww~g~~---~---g~~G~~P~~yv   59 (69)
T 1uhf_A            7 GGEEYIALYPY---SSVE-----PGDLTFTEGEEILV-TQKDG-----EWWTGSI---G---DRSGIFPSNYV   59 (69)
T ss_dssp             CSEEEECSSCB---CCSS-----SSBCCBCTTCEEEE-CEEET-----TEEEECS---T---TCCEEECGGGC
T ss_pred             CCCEEEEeeeE---CCCC-----cCccCCCCCCEEEE-EEeCC-----CEEEEEe---C---CcEEEEchHHe
Confidence            34568899999   3322     12567789999999 66543     7999963   2   48899999753

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=95.94  E-value=0.003  Score=47.36  Aligned_cols=53  Identities=6%  Similarity=-0.011  Sum_probs=36.2

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .++|+++|   .+.++     .++.|..||++.| +..++   ...||.++... +   .+.|++|+..
T Consensus         3 ~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~---~~~W~~g~~~~-~---g~~G~~P~~y   55 (58)
T 1zuu_A            3 ENKVLYAY---VQKDD-----DEITITPGDKISL-VARDT---GSGWTKINNDT-T---GETGLVPTTY   55 (58)
T ss_dssp             CCEECSCB---CCCST-----TBCCBCTTCCEEE-EECCS---SSSEEEEEETT-T---TEEEEEEGGG
T ss_pred             EEEEeeeE---CCcCC-----CcccCCCCCEEEE-eEcCC---CCCCEEEEECC-C---CCEEEEEHHH
Confidence            46788888   33221     3667889999999 55553   12799997642 2   4789999864

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=95.92  E-value=0.0059  Score=50.69  Aligned_cols=53  Identities=11%  Similarity=0.030  Sum_probs=38.8

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.++     -++.|.+||++.| +.+.+.    .||.++.   +   .+.|++|+..
T Consensus        17 ~~~~~~Alydy---~a~~~-----~eLsf~~Gd~i~V-~~~~~~----gWw~g~~---~---g~~G~fPsny   69 (92)
T 2o2o_A           17 RRRRCQVAFSY---LPQND-----DELELKVGDIIEV-VGEVEE----GWWEGVL---N---GKTGMFPSNF   69 (92)
T ss_dssp             SSCEEEECSCB---CCCSS-----SCCCBCSSCEEEC-CCGGGS----SCBCCEE---T---TEECCBCSSS
T ss_pred             CCeEEEEcccc---CCCCC-----ccccccCCCEEEE-eEecCC----CEEEEEE---C---CeEEEeehHH
Confidence            35688999999   33322     2567889999999 665443    7999975   2   4899999974

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=95.90  E-value=0.007  Score=50.25  Aligned_cols=59  Identities=10%  Similarity=0.029  Sum_probs=40.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..++++|+++|   .+.++     .++.|.+||++.| +.+++.+....||.++..   +  .+.|++|+...
T Consensus        16 ~~~~~~alydy---~a~~~-----~eLsf~~Gd~i~v-~~~~~~~~~~gWw~g~~~---~--~~~G~~P~~yv   74 (93)
T 1wxu_A           16 DHVVARAEYDF---VAVSD-----EEISFRAGDMLNL-ALKEQQPKVRGWLLASLD---G--QTTGLIPANYV   74 (93)
T ss_dssp             CBBCEEESSCB---CCSSS-----SBCCBCSSCBCEE-CCTTTSCSCSSCEEEESS---S--SSCEEECSTTE
T ss_pred             CCEEEEECccC---CCCCC-----CccCcCCCCEEEE-EECCCCCCCCCcEEEEeC---C--cCEEEEehHHE
Confidence            35779999999   33322     2567889999999 666542222379999532   2  25899999754

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=95.87  E-value=0.0026  Score=48.91  Aligned_cols=57  Identities=11%  Similarity=0.045  Sum_probs=38.2

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCC-CCc-cceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGR-NNQ-EVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~-~~~-~~~~GlIPs~~  383 (627)
                      .+++|+++|.+   .+     ..++.|.+||++.| +...+.    .||.++.... +|. ..+.|++|+..
T Consensus         2 ~~~~alydy~~---~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~~~~g~~~g~~G~~P~~y   60 (65)
T 2oaw_A            2 ELVLALYDYQE---KS-----PREVTMKKGDILTL-LNSTNK----DWWKVEVKITVNGKTYERQGFVPAAY   60 (65)
T ss_dssp             EEEEECSCBCC---SS-----TTBCCBCTTCEEEE-EECCSS----SEEEEEEEEEETTEEEEEEEEEEGGG
T ss_pred             cEEEEcccCCc---cC-----CCCCCCCCCCEEEE-EEcCCC----CEEEEEEccccCCCcCCcEEEEchHH
Confidence            36788898833   22     23567789999999 665544    8999976521 111 15889999874

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=95.87  E-value=0.003  Score=50.86  Aligned_cols=54  Identities=11%  Similarity=-0.010  Sum_probs=38.8

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .+++|+++|   .+.+     ..++.|.+||++.| +.+++.    .||.++... +   .+.|++|+...
T Consensus         6 ~~~~Alydy---~~~~-----~~eLs~~~Gd~i~v-l~~~~~----~Ww~g~~~~-~---g~~G~~P~~yv   59 (79)
T 3cqt_A            6 TLFEALYDY---EART-----EDDLSFHKGEKFQI-LNSSEG----DWWEARSLT-T---GETGYIPSIYL   59 (79)
T ss_dssp             CCEEESSCB---CCCS-----TTBCCBCTTCEEEE-EECTTS----SEEEEEETT-T---CCEEEEEGGGE
T ss_pred             cEEEECccC---CCCC-----cCcCCCCCCCEEEE-EEecCC----CeEEEEECC-C---CCEEEeehHHe
Confidence            468889998   3322     12567889999999 665554    799997753 2   48899999754

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=95.86  E-value=0.0035  Score=47.33  Aligned_cols=53  Identities=6%  Similarity=-0.108  Sum_probs=37.0

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccC-CCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQ-LDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~-~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+++|+++|   .+.++     .++.|.+||++.| +.. ++.    .||.++... +   .+.|++|+..
T Consensus         3 ~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~~----~Ww~g~~~~-~---g~~G~~P~~y   56 (60)
T 2v1q_A            3 ERGIVQYDF---MAESQ-----DELTIKSGDKVYI-LDDKKSK----DWWMCQLVD-S---GKSGLVPAQF   56 (60)
T ss_dssp             CEEEECSCB---CCCST-----TBCCBCTTCEEEE-EESSSCS----SEEEEEETT-T---CCEEEEEGGG
T ss_pred             cEEEEeeeE---CCCCC-----CCccCCCCCEEEE-EeCCCCC----CCEEEEECC-C---CCEEEEEHHH
Confidence            467888888   33221     2567789999999 555 233    799997642 2   4889999864

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.84  E-value=0.0026  Score=51.22  Aligned_cols=54  Identities=15%  Similarity=-0.037  Sum_probs=38.4

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +..++     .||.++... +   .+.|+||+...
T Consensus        17 ~~~~~Alydy---~a~~~-----~eLs~~~Gd~i~v-~~~~~-----~Ww~~~~~~-~---g~~G~~P~~yv   70 (79)
T 2cud_A           17 SDFLAVLSDY---PSPDI-----SPPIFRRGEKLRV-ISDEG-----GWWKAISLS-T---GRESYIPGICV   70 (79)
T ss_dssp             CCEEEESSCS---SCTTT-----SCCSSCTTCEEEE-EEEET-----TEEEEEETT-T---CCEEEEEGGGE
T ss_pred             CeEEEEccCC---CCCCC-----CcCCCCCCCEEEE-EecCC-----CeEEEEECC-C---CCEEEeeHHHe
Confidence            4578899999   33221     2567789999999 55433     799997653 2   38899999754

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.84  E-value=0.0057  Score=49.07  Aligned_cols=54  Identities=9%  Similarity=-0.047  Sum_probs=38.8

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.+.    .||.++.   +   .+.|++|+...
T Consensus         6 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~yv   59 (79)
T 2yun_A            6 SGRLCKALYSF---QARQD-----DELNLEKGDIVII-HEKKEE----GWWFGSL---N---GKKGHFPAAYV   59 (79)
T ss_dssp             CSEEEEESSCB---CCSST-----TBCCBCTTCEEEE-EECCSS----SCEEEES---S---SCEEEECSTTE
T ss_pred             CCCEEEECccC---CcCCC-----CCcCCCCCCEEEE-EEcCCC----CEEEEEE---C---CCEEEEEhHHe
Confidence            45688999999   33221     2567889999999 655444    7999973   2   37899999754

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=95.83  E-value=0.003  Score=48.11  Aligned_cols=52  Identities=13%  Similarity=0.004  Sum_probs=36.8

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      +++|+++|.+   .++     .++.|..||++.| +.+.|.    .||.++... +   .+.|++|+..
T Consensus         5 ~~~al~~y~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~W~~g~~~~-~---g~~G~fP~~y   56 (62)
T 2fpe_A            5 THRAIFRFVP---RHE-----DELELEVDDPLLV-ELQAED----YWYEAYNMR-T---GARGVFPAYY   56 (62)
T ss_dssp             CEEECSCBCC---SST-----TBCCBCTTCEEEE-EEECTT----SEEEEEETT-T---CCEEEEEGGG
T ss_pred             EEEECccCCc---cCc-----CcCcCCCCCEEEE-EEecCC----CEEEEEECC-C---CCEEEechHH
Confidence            5788888833   221     2567889999999 555554    799997532 2   4799999874

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=95.82  E-value=0.0038  Score=47.39  Aligned_cols=53  Identities=8%  Similarity=-0.071  Sum_probs=36.2

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..+++|+++|.   +.++     .++.|.+||++.| +.+.+.    .||.++..   +  ..-|++|+..
T Consensus         3 ~~~~~al~dy~---~~~~-----~eLs~~~Gd~i~v-~~~~~~----~W~~g~~~---g--~~gG~~P~~y   55 (61)
T 1y0m_A            3 KSAVKALFDYK---AQRE-----DELTFTKSAIIQN-VEKQDG----GWWRGDYG---G--KKQLWFPSNY   55 (61)
T ss_dssp             CCCEEESSCBC---CCST-----TBCCBCTTCEEEE-EECCSS----SEEEEEET---T--EEEEEEEGGG
T ss_pred             CCEEEECcCCC---cCCC-----CCcCCcCCCEEEE-EEecCC----CEEEEEEC---C--eEEEEEChHH
Confidence            35788999993   3221     2567889999999 665444    79999662   2  2335999864

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.82  E-value=0.0042  Score=49.19  Aligned_cols=53  Identities=19%  Similarity=0.127  Sum_probs=38.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+++     .||.++.   +   .+.|++|+...
T Consensus         9 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~-----~Ww~g~~---~---g~~G~~P~~yv   61 (74)
T 1j3t_A            9 ENLKAQALCSW---TAKKD-----NHLNFSKHDIITV-LEQQE-----NWWFGEV---H---GGRGWFPKSYV   61 (74)
T ss_dssp             CCCEEEESSCB---CCCST-----TBCCBCTTCEEEE-EEECS-----SEEEEES---T---TCCCEEEGGGE
T ss_pred             CCeEEEECCCC---CCCCC-----CccCCCCCCEEEE-EecCC-----CEEEEEE---C---CcEEEEchHHe
Confidence            46789999999   33222     2567889999999 66543     6999975   2   37899999753

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.80  E-value=0.0055  Score=49.28  Aligned_cols=59  Identities=12%  Similarity=-0.016  Sum_probs=41.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...|++|+++|   .+.+     ..++.|..||++.| +.+++.    .||.++... .+...+.|++|+...
T Consensus         6 ~~~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~~----gWw~g~~~~-~g~~~~~G~fP~~yv   64 (80)
T 1ue9_A            6 SGEIAQVTSAY---VASG-----SEQLSLAPGQLILI-LKKNTS----GWWQGELQA-RGKKRQKGWFPASHV   64 (80)
T ss_dssp             CCEEEEECSCC---CCCS-----TTBCCCCTTCEEEE-EEECSS----SEEEEEECS-CCSSCCEEEEETTSE
T ss_pred             CCeEEEECccc---CCCC-----CCCCCCCCCCEEEE-EEecCC----CcEEEEECC-CCCCCcEEEEchHHe
Confidence            45688999999   3322     23567889999999 665554    799997653 222348999999753

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.80  E-value=0.0047  Score=48.21  Aligned_cols=56  Identities=13%  Similarity=-0.051  Sum_probs=39.5

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|..||++.| +.+.+.    .||.++... +   .+.|++|+...
T Consensus         6 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----gW~~g~~~~-~---g~~G~~P~~yv   61 (70)
T 2ct3_A            6 SGTPYRAMYQY---RPQNE-----DELELREGDRVDV-MQQCDD----GWFVGVSRR-T---QKFGTFPGNYV   61 (70)
T ss_dssp             CCEEEEESSCB---CCSST-----TBCCBCTTEEEEE-EEECSS----SCEEEEESS-S---CCEEEECTTTE
T ss_pred             CCcEEEECccC---CcCCc-----CCccCCCCCEEEE-EEECCC----CEEEEEECC-C---CCEEEechHHe
Confidence            35678999999   33221     2567889999999 655444    799997642 2   47899999753

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=95.79  E-value=0.0056  Score=50.56  Aligned_cols=54  Identities=13%  Similarity=0.054  Sum_probs=38.7

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccC--CCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQ--LDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~--~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +.+  .|.    .||.++..+     .+.|++|+...
T Consensus        17 ~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~~~----~Ww~g~~~~-----g~~G~~P~~yv   72 (91)
T 1wx6_A           17 LHVVQTLYPF---SSVTE-----EELNFEKGETMEV-IEKPENDP----EWWKCKNAR-----GQVGLVPKNYV   72 (91)
T ss_dssp             CEEEEESSCC---CCSSS-----SBCCCCTTCEEEE-EECCSSCT----TEEEEECTT-----CCEEEEEGGGE
T ss_pred             cEEEEEeecC---CcCCC-----CcccCCCCCEEEE-EECCCCCC----CcEEEEeCC-----CCEEEEchHHE
Confidence            4579999999   33322     3567889999999 665  333    799997532     48899999754

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.78  E-value=0.0071  Score=47.72  Aligned_cols=56  Identities=7%  Similarity=-0.074  Sum_probs=38.3

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+.+  ....||.++.   +   .+.|++|+...
T Consensus         6 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~--~~~~Ww~g~~---~---g~~G~~P~~yv   61 (73)
T 2dm1_A            6 SGGTAVARYNF---AARDM-----RELSLREGDVVRI-YSRIG--GDQGWWKGET---N---GRIGWFPSTYV   61 (73)
T ss_dssp             SSSEEEESSCB---CCCST-----TBCCBCTTCEEEC-CBSSS--SSSSCEEEEE---T---TEEEEECSSSE
T ss_pred             CCCEEEECccC---CcCCC-----CcCCCCCCCEEEE-EEecC--CCCCeEEEEE---C---CeEEEeehHHE
Confidence            35678999999   33221     3567889999999 55431  0127999974   2   48899999754

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=95.78  E-value=0.0045  Score=48.07  Aligned_cols=53  Identities=9%  Similarity=-0.054  Sum_probs=37.5

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...++|+++|   .+.+     ..++.|.+||++.| +.+.+.    .||.++..+     .+.|++|+..
T Consensus        10 ~~~~~al~dy---~~~~-----~~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-----g~~G~~P~~y   62 (68)
T 1s1n_A           10 GEEYIAVGDF---TAQQ-----VGDLTFKKGEILLV-IEKKPD----GWWIAKDAK-----GNEGLVPRTY   62 (68)
T ss_dssp             CEEEEECSCB---CCSS-----SSCCCBCSSEEEEE-CSCCSS----SEEEEECSS-----SCEEEEESTT
T ss_pred             CCEEEEcccC---CCCC-----CCcCCCCCCCEEEE-EEcCCC----CeEEEEECC-----CCEEEEehHH
Confidence            4556789998   3322     13567789999999 666554    799997542     4789999974

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.77  E-value=0.0051  Score=49.57  Aligned_cols=54  Identities=9%  Similarity=-0.080  Sum_probs=38.5

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   .+.++     .++.|.+||++.| +.+++.    .||.++..      .+.|++|+...
T Consensus         7 ~~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-l~~~~~----gWw~g~~~------g~~G~~P~~yv   60 (80)
T 2ekh_A            7 GATSYMTCSAY---QKVQD-----SEISFPAGVEVQV-LEKQES----GWWYVRFG------ELEGWAPSHYL   60 (80)
T ss_dssp             SCEEEEECSCB---CCSST-----TSCCBCTTCEEEE-EEECTT----SEEEEEET------TEEEEEETTTE
T ss_pred             CCCEEEECCCC---CCCCC-----CccCcCCCCEEEE-EEeCCC----CeEEEEEC------CCEEEEEhHHe
Confidence            34567789998   33221     3567889999999 666554    79999642      48999999754

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=95.76  E-value=0.0039  Score=51.47  Aligned_cols=54  Identities=17%  Similarity=0.000  Sum_probs=39.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCC-----CCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQL-----DRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~-----d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|   .+.++     .++.|..||++.| +.++     +.    .||.++..+     .+.|++|+..
T Consensus        28 ~~~~~~Alydy---~a~~~-----~ELsf~~GD~I~V-l~~~~~~~~~~----gWw~g~~~~-----g~~G~fP~ny   86 (89)
T 2rf0_A           28 AGPVWTAVFDY---EAAGD-----EELTLRRGDRVQV-LSQDCAVSGDE----GWWTGQLPS-----GRVGVFPSNY   86 (89)
T ss_dssp             CCCEEEECSCB---CCSST-----TBCCBCTTCEEEE-EECCHHHHSST----TEEEEECTT-----CCEEEEEGGG
T ss_pred             CCcEEEECCcc---CCCCC-----CccccCCCCEEEE-EeccCCcccCC----CEEEEEECC-----CCEEEEcHHH
Confidence            35678999999   33322     2567889999999 6653     33    799997642     4889999864

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.0028  Score=47.69  Aligned_cols=53  Identities=8%  Similarity=0.011  Sum_probs=36.9

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+++|+++|.+   .++     .++.|.+||++.| +.+.+.    .||.++... +   .+.|++|+..
T Consensus         2 ~~~~al~d~~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----gW~~g~~~~-~---g~~G~~P~~y   54 (59)
T 1yn8_A            2 QRAVALYDFEP---END-----NELRLAEGDIVFI-SYKHGQ----GWLVAENES-G---SKTGLVPEEF   54 (59)
T ss_dssp             EEEEECSCBCC---CST-----TBCCBCTTCEEEE-EEEEET----TEEEEECTT-S---SCEEEEEGGG
T ss_pred             CEEEECccCCC---CCC-----CCcCCCCCCEEEE-EEcCCC----CeEEEEECC-C---CCEEEEehHH
Confidence            35788888833   221     3567889999999 555443    699997653 1   4889999864

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=95.75  E-value=0.004  Score=50.21  Aligned_cols=54  Identities=13%  Similarity=0.030  Sum_probs=39.3

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCc-CccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPI-NNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~-wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|   ...++     .++.|..||++.| +.+.|.    . ||.++.   +   .+.|++|+...
T Consensus         9 ~~~~~~alydy---~~~~~-----~eLsf~~Gd~i~v-~~~~~~----~gWw~g~~---~---g~~G~fP~~yv   63 (80)
T 2i0n_A            9 FAKYARALKDY---NVSDT-----SLLPFKRNDIITI-TFKDQE----NKWFMGQL---N---GKEGSFPVDHV   63 (80)
T ss_dssp             CCCEEEESSCB---CCCSS-----SSCCBCSSEEEEE-EEESSS----SSEEEEEE---T---TEEEEEEGGGE
T ss_pred             CCeEEEECCCC---CcCCC-----CCcCCCCCCEEEE-EEecCC----CCEEEEEE---C---CcEEEechHHE
Confidence            46789999999   33222     3567889999999 666554    6 999963   2   48899999753

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=95.75  E-value=0.0032  Score=48.85  Aligned_cols=54  Identities=9%  Similarity=-0.023  Sum_probs=37.5

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .++||+++|   .+..+   ...++.|..||++.| +.+.+.    .||.+..   +   .+.|++|+...
T Consensus         2 ~~~~al~dy---~~~~~---~~~eLsf~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~fP~~yv   55 (67)
T 2bzy_A            2 VFAKAIQKR---VPCAY---DKTALALEVGDIVKV-TRMNIN----GQWEGEV---N---GRKGLFPFTHV   55 (67)
T ss_dssp             EEEEECSCB---CSEEE---CTTBCCBCTTCEEEE-EEECSS----SEEEEEE---T---TEEEEEEGGGE
T ss_pred             cEEEEeeeE---CCCCC---CCCccccCCCCEEEE-EEecCC----CeEEEEe---C---CcEEEEehHHe
Confidence            478899999   33210   123667889999999 665554    7999844   2   48999999753

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=95.75  E-value=0.0045  Score=47.92  Aligned_cols=54  Identities=15%  Similarity=0.012  Sum_probs=38.6

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..+++|+++|   .+.++     .++.|.+||++.| +.+.|.    .||.++..+ .   .+.|++|+..
T Consensus         6 ~~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-~---g~~G~~P~~y   59 (67)
T 2o9s_A            6 TGEAIAKFNF---NGDTQ-----VEMSFRKGERITL-LRQVDE----NWYEGRIPG-T---SRQGIFPITY   59 (67)
T ss_dssp             SEEEEECSCB---CCSST-----TBCCBCTTCEEEE-EEECSS----SEEEEECTT-S---SCEEEEEGGG
T ss_pred             CEEEEECccC---CcCCc-----CccCCCCCCEEEE-EEecCC----CEEEEEECC-C---CCEEEEChHH
Confidence            4568899999   33221     2567889999999 655444    799997654 2   4899999874

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=95.74  E-value=0.0061  Score=48.03  Aligned_cols=53  Identities=9%  Similarity=0.037  Sum_probs=38.2

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCC--CCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQL--DRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~--d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ...+++|+++|.+   .+     ..++.|.+||++.| +..+  +.    .||.++.   +   .+.|++|+..
T Consensus         8 ~~~~~~al~dy~~---~~-----~~eLs~~~Gd~i~v-~~~~~~~~----~W~~g~~---~---g~~G~~P~~y   62 (73)
T 2k9g_A            8 SKDYCKVIFPYEA---QN-----DDELTIKEGDIVTL-INKDCIDV----GWWEGEL---N---GRRGVFPDNF   62 (73)
T ss_dssp             SCEEEEECSCBCC---SS-----TTBCCBCTTCEEEE-EECCSSST----TEEEEEE---T---TEEEEEEGGG
T ss_pred             CccEEEECccCCC---CC-----CCeeeECCCCEEEE-EECCCCCC----CEEEEEE---C---CeEEEEchHH
Confidence            4568999999933   22     13567889999999 5553  33    7999974   2   4899999974

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=95.74  E-value=0.0039  Score=48.71  Aligned_cols=56  Identities=13%  Similarity=-0.034  Sum_probs=39.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+++|+++|.+   .++     .++.|..||++.| +.+.+.    .||.++... +   .+.|++|+...
T Consensus         6 ~~~~~~al~~y~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~~~-~---g~~G~~P~~yv   61 (70)
T 2cuc_A            6 SGNMFVALHTYSA---HRP-----EELDLQKGEGIRV-LGKYQD----GWLKGLSLL-T---GRTGIFPSDYV   61 (70)
T ss_dssp             SSCCEECCSCBCC---CST-----TBCCBCTTCEEEE-EEEEET----TEEEEEETT-T---CCEEEEEGGGC
T ss_pred             CCcEEEECeeECc---CCC-----CcCCCCCCCEEEE-EEecCC----CeEEEEECC-C---CCEEEEchHHe
Confidence            3457889999933   221     2567789999999 655443    799997432 2   48899999753

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.0031  Score=49.98  Aligned_cols=54  Identities=6%  Similarity=-0.052  Sum_probs=38.5

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .+++|+++|   .+.++     .++.|.+||++.| +.+.+.    .||.++... +   .+.|++|+...
T Consensus         6 ~~~~Alydy---~a~~~-----~eLs~~~Gd~i~v-~~~~~~----gWw~g~~~~-~---g~~G~~P~~yv   59 (73)
T 2lcs_A            6 QRAVALYDF---EPEND-----NELRLAEGDIVFI-SYKHGQ----GWLVAENES-G---SKTGLVPEEFV   59 (73)
T ss_dssp             EEEEESSCB---CCSST-----TBCCBCTTCEEEE-EEEETT----TEEEEECTT-S---SCEEEEESTTE
T ss_pred             CEEEECccC---CCCCC-----CccCCcCCCEEEE-EEEcCC----CEEEEEECC-C---CCEEEeeHHHE
Confidence            467889998   33222     3567889999999 665554    799997653 1   48899999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	627
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	4e-21
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-07
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	1e-05
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	2e-18
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	1e-06
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	8e-06
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-17
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	6e-07
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-05
d1kjwa2	199	c.37.1.1 (A:526-724) Guanylate kinase-like domain	4e-16
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	1e-15
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	0.001
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-15
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-08
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	3e-08
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-15
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-07
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	6e-07
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	2e-15
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	7e-08
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	2e-07
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	3e-15
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-08
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-07
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	4e-15
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	3e-07
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	5e-07
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	5e-15
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	3e-07
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	1e-06
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	5e-15
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-07
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	1e-06
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-14
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	9e-10
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-05
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-14
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	9e-08
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	4e-07
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-14
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	1e-07
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	9e-07
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	6e-14
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	1e-08
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	8e-14
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	4e-05
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	4e-04
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-13
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-05
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-04
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	2e-13
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	9e-06
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-04
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-13
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	8e-05
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-04
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	2e-13
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	5e-05
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	0.003
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-13
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-05
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-04
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	4e-13
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	8e-04
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	0.003
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	5e-13
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	5e-09
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	6e-06
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	5e-13
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	3e-07
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	9e-06
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	5e-13
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-04
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	2e-04
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	7e-13
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	1e-07
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	3e-07
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	8e-13
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-05
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	3e-05
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	1e-12
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	7e-08
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	4e-06
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	1e-12
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	3e-05
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	7e-05
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	2e-12
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-07
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-04
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	2e-12
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	6e-07
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	1e-06
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	2e-12
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	3e-09
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	9e-07
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-12
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-06
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-04
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-12
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-05
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	6e-04
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-12
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-06
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	8e-05
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	4e-12
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	6e-06
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	7e-06
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	6e-12
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	1e-06
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	2e-06
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	9e-12
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	4e-06
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	5e-05
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-11
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	4e-06
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-05
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-11
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-08
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-06
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-11
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-05
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	0.001
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	2e-11
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	1e-04
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	5e-04
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	3e-11
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	3e-07
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-05
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	3e-11
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-04
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-04
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	3e-11
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	9e-04
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-11
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-06
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-05
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	7e-11
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-06
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-05
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	1e-10
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-04
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	0.003
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	1e-10
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	7e-05
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	0.001
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	2e-10
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	2e-06
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.001
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	2e-10
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	6e-04
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	0.003
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-10
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-05
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-04
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-10
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-08
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-04
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	3e-10
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	3e-10
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-06
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	5e-06
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	5e-10
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	4e-05
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-04
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	7e-10
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	0.004
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	8e-10
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-04
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-09
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-06
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-05
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-09
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-05
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	3e-07
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-07
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-05
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-04
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	8e-07
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	1e-05
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	2e-06
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	6e-06
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	4e-04
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	7e-04

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 4e-21
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 49  PDPRFITFQKEGS-VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
            +PR +  QK    +GI +  G K GI+V+ V  GS A   GL+ GD++L+ N ++++  
Sbjct: 18  EEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSA 77

Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           T ++A L +    D I ++ Q     ++    S+ G S
Sbjct: 78  TEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPS 115

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 178 GSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNAS 235
           GS+ +    RR   P   EP+   V++ K  +     I+ G K  I+V +VT      + 
Sbjct: 1   GSSGSSGGERRKDRPYVEEPRH--VKVQKGSEPLGISIVSGEKGGIYVSKVTV----GSI 54

Query: 236 PGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
                L  GD LL+ N       + ++AR +I    + +++  +     P  +Q S+ 
Sbjct: 55  AHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQY---NPHVHQLSSH 109

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS 207
           ++  D+++  NG++L +     A  ++     T+T+  +        P    L       
Sbjct: 60  LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYN------PHVHQLSSHSRSG 113

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 48  EPDPRFITFQK-EGSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
              PR    +K     G  L G   K+G ++  V+PGSPA   GL  GD++++VN  +++
Sbjct: 1   RMLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVE 60

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
             T ++ V  + +  + + L+V    +  E +
Sbjct: 61  KETHQQVVSRIRAALNAVRLLVV-DPETDEQL 91

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   DR++  NG ++E   +   V  +R + + V L V   
Sbjct: 45  LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 11/87 (12%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHP 254
            P+   ++    +  + +G  + G K  + +    ++  +      L  GD L+++N   
Sbjct: 3   LPRLCCLE----KGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGEN 58

Query: 255 TDGMSVKEARKLIDSSKEKLSLTIRRE 281
            +  + ++    I ++   + L +   
Sbjct: 59  VEKETHQQVVSRIRAALNAVRLLVVDP 85

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.1 bits (187), Expect = 1e-17
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 47  VEPDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
           +  +PR I   +    +G  + GG +  GIF++ +  G PA L G L+ GD+IL VN +D
Sbjct: 6   IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVD 65

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
           ++  + E+A + L +    + +I Q + +EY    A+
Sbjct: 66  LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAN 102

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIIL-----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
            EP+ + +     R     G  +     G  IF+  +        +  + +L +GD +L 
Sbjct: 8   REPRRIVIH----RGSTGLGFNIVGGEDGEGIFISFILA---GGPADLSGELRKGDQILS 60

Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQE 290
           +N       S ++A   + ++ + +++  +    +P  Y  
Sbjct: 61  VNGVDLRNASHEQAAIALKNAGQTVTIIAQY---KPEEYSR 98

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            ++  D+I+S NG+ L N  +  A   L+++G TVT+  + +
Sbjct: 51  ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 92

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.9 bits (183), Expect = 4e-16
 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 36/196 (18%)

Query: 446 VSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFS--------APRK------------- 484
           V+     + RP+++ GP  D A D LL +FPDKF           R+             
Sbjct: 1   VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSS 60

Query: 485 ---FNFILWATIKDTAMYQSSK---------EPGMYQGKDSMYQGKDSMYQGKESMYQGK 532
                  + A     A   +S               QGK  +     +  +  ++ +   
Sbjct: 61  REKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHP 120

Query: 533 DSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYR 592
            +++    S+    +   +   I +E   K F+++ KLE+ ++  F+  +     +  Y 
Sbjct: 121 IAIFIRPRSLENVLEINKR---ITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYH 177

Query: 593 KTRELIEKQQSSPVWI 608
           K + +IE      +W+
Sbjct: 178 KVKRVIEDLSGPYIWV 193

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 50  DPRFITFQK--EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
           DPR +   K  +G +G+RL   +  GIFV  VQ  SPASL GL+ GD++L++N  +  G 
Sbjct: 2   DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 60

Query: 108 TREEAV-LFLLSLQDQIHLIVQNR 130
           + ++A  +   +  ++I + +++R
Sbjct: 61  SSDKAHKVLKQAFGEKITMTIRDR 84

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDS-GSTVTLKVRRR 188
           ++  D+++  NG +        A +VL+ + G  +T+ +R R
Sbjct: 43  LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR 84

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 50  DPRFITFQKE--GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKILKV 99
           +   +T QK+     GI ++GG         +  I ++ V PG PA    LQ  D+++ V
Sbjct: 7   EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMV 65

Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           N   M+ +    AV  L        ++V+  R 
Sbjct: 66  NGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRK 98

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASP 195
           ++ NDR++  NG  +E+V +  AVQ LR SG    + V+R   +  +P
Sbjct: 56  LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAP 103

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 18/102 (17%)

Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTHQLAEGD 245
           +   V L K  K+  FGI + G +           I + +V         P    L E D
Sbjct: 7   EQYTVTLQKDSKRG-FGIAVSGGRDNPHFENGETSIVISDVLP-----GGPADGLLQEND 60

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
            ++ +N  P + +    A + +  S +  ++ ++R      A
Sbjct: 61  RVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVA 102

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 51  PRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
              +T    G  G RL GG    + + ++ + PGS A+   L  GD ++ ++ ++   +T
Sbjct: 2   AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61

Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
             EA   + S    + L +  ++ +
Sbjct: 62  HLEAQNKIKSASYNLSLTL--QKSK 84

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 4/41 (9%), Positives = 22/41 (53%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
            +   D +++ +G++ + + +  A   ++ +   ++L +++
Sbjct: 42  QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQK 82

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 238 THQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
             QL++GD+++ I+   TD M+  EA+  I S+   LSLT+++ 
Sbjct: 40  QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS 83

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 11/87 (12%)

Query: 54  ITFQKEGSVGIRLTGG----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           +  +K+  +G  ++GG          +  GIFVT VQP  PAS + LQPGDKI++ N   
Sbjct: 15  VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYS 73

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNR 130
              I   +AV  L + Q+ + LI+   
Sbjct: 74  FINIEHGQAVSLLKTFQNTVELIIVRE 100

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 7e-08
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 22/102 (21%)

Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK-------------IFVKEVTHRLDNNASPGTHQL 241
             Q +RV++ K  +    G  I G               IFV  V         P +  L
Sbjct: 9   AKQEIRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPE-----GPASKLL 60

Query: 242 AEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
             GD +++ N +    +   +A  L+ + +  + L I REV 
Sbjct: 61  QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVS 102

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           ++  D+I+ ANG S  N+E+G AV +L+   +TV L + R +
Sbjct: 60  LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 3e-15
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 48  EPDPRFITFQKEGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
           EP+   +T +K+  +G+ +        +K+GI+V +V  G  A + G L  GD++L V+ 
Sbjct: 2   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 61

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNR 130
             + G+++E A   +      + L V  +
Sbjct: 62  RSLVGLSQERAAELMTRTSSVVTLEVAKQ 90

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
              +   D+++S +G SL  +    A +++  + S VTL+V ++
Sbjct: 47  DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 90

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 15/95 (15%)

Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGTHQLAEGDV 246
           EP+ + V L   +K++  G+ I+  K        I+VK V   +   A+    +LA GD 
Sbjct: 2   EPEIITVTL---KKQNGMGLSIVAAKGAGQDKLGIYVKSV---VKGGAADVDGRLAAGDQ 55

Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
           LL ++     G+S + A +L+  +   ++L + ++
Sbjct: 56  LLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 90

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.7 bits (168), Expect = 4e-15
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 51  PRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
            R +T +K   G +GI + GG  NK+ I ++ +  G  A     L  GD IL VN  D+ 
Sbjct: 5   RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64

Query: 106 GITREEAVLFLLSLQDQIHLIVQNRR 131
             T +EAV  L     ++ L V+  +
Sbjct: 65  SATHDEAVQALKKTGKEVVLEVKYMK 90

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLLKIN 251
           Q  RV + K       GI I G +     I + ++       A+  T  L  GD +L +N
Sbjct: 4   QRRRVTVRK-ADAGGLGISIKGGRENKMPILISKI---FKGLAADQTEALFVGDAILSVN 59

Query: 252 NHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
                  +  EA + +  + +++ L ++ 
Sbjct: 60  GEDLSSATHDEAVQALKKTGKEVVLEVKY 88

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            + V D I+S NG  L +  +  AVQ L+ +G  V L+V+  
Sbjct: 48  ALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM 89

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 5e-15
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 47  VEPDPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKIL 97
           +E +   +T  ++ G +GI + GG        +  GIF++ V    PA+  G++ GDK+L
Sbjct: 5   IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLL 64

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           +VN + ++G    EAV  L      + + V   R+
Sbjct: 65  EVNGVALQGAEHHEAVEALRGAGTAVQMRV--WRE 97

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 18/102 (17%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTH 239
           PA  E + L + + +       GI I G K           IF+  V+            
Sbjct: 2   PARIEEEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSE----EGPAARA 55

Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
            +  GD LL++N     G    EA + +  +   + + + RE
Sbjct: 56  GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 97

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 14/41 (34%), Positives = 28/41 (68%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
            ++V D+++  NG++L+  E+  AV+ LR +G+ V ++V R
Sbjct: 56  GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 96

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 5e-15
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 14/92 (15%)

Query: 51  PRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG-LQPGDKI 96
           PR +   +E   S+GI + GG              GIF+  V   SPA   G L+PGD+I
Sbjct: 2   PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 61

Query: 97  LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
           ++V+ MD++  + E+AV  +    + +  +VQ
Sbjct: 62  VEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 93

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
            +K  DRI+  +G+ L +  +  AV+ +R +G+ V   V+  I
Sbjct: 54  TLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII 96

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IF+K V   L+++ +     L  GD +++++       S ++A + I  +   +   ++ 
Sbjct: 38  IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 94

Query: 281 EV 282
            +
Sbjct: 95  II 96

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 49  PDPRFITFQKE---GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
            +   +T  K+      G  +  G  + G++V  ++P  P  L GL+P D++L+VN +  
Sbjct: 5   VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRT 64

Query: 105 KGITREEAVLFLLSLQDQIHLIVQ 128
           +       V  +    +++ L++ 
Sbjct: 65  RDFDCCLVVPLIAESGNKLDLVIS 88

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.4 bits (128), Expect = 9e-10
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 194 SPEPQTLR-VQLSKSRKKDDFGI-ILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
           SP P  L  V L K    +DFG  +        ++VK +              L   D L
Sbjct: 1   SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRP----AGPGDLGGLKPYDRL 56

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           L++N+  T          LI  S  KL L I R
Sbjct: 57  LQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 144 DSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           D   +K  DR++  N +   + +    V ++ +SG+ + L + R 
Sbjct: 46  DLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 54  ITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
           IT  + +   G  +   +   + V AV  G PA   GLQ  D +L++N+  ++     E 
Sbjct: 1   ITIPRGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVEL 58

Query: 113 VLFLLSLQDQIHLIVQ 128
              + S   +I L+V 
Sbjct: 59  AHEIRSCPSEIILLVW 74

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 202 VQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVK 261
           + + + +    F I   + + V+ V              L + D +L++N  P +     
Sbjct: 1   ITIPRGKDGFGFTICCDSPVRVQAVDS----GGPAERAGLQQLDTVLQLNERPVEHWKCV 56

Query: 262 EARKLIDSSKEKLSLTIRREV 282
           E    I S   ++ L + R V
Sbjct: 57  ELAHEIRSCPSEIILLVWRMV 77

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
           ++  D ++  N   +E+ +       +R   S + L V R +
Sbjct: 36  LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMV 77

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (162), Expect = 3e-14
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 54  ITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           +  ++  G +GI ++G       I ++++  G  A   G +  GD+IL +N   +KG   
Sbjct: 7   VELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPL 66

Query: 110 EEAVLFLLSLQDQIHLIVQNRRDE 133
            EA+  L    + + L ++ + D 
Sbjct: 67  SEAIHLLQMAGETVTLKIKKQTDA 90

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 202 VQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPT 255
           V+L +       GI +       + I +  +T       +  T  +  GD +L IN+   
Sbjct: 7   VELKRY--GGPLGITISGTEEPFDPIIISSLTK---GGLAERTGAIHIGDRILAINSSSL 61

Query: 256 DGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
            G  + EA  L+  + E ++L I+++     A
Sbjct: 62  KGKPLSEAIHLLQMAGETVTLKIKKQTDAQPA 93

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 15/42 (35%), Positives = 27/42 (64%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            I + DRI++ N  SL+      A+ +L+ +G TVTLK++++
Sbjct: 46  AIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ 87

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.7 bits (160), Expect = 6e-14
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 48  EPDPRFITFQKEGSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
           +P  R IT  KE  +G+++ GG        +++  V PG      G L+PGD+++ +N  
Sbjct: 6   DPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE 65

Query: 103 DMKGITREEAVLFL 116
            M G++ EEA   +
Sbjct: 66  SMIGVSFEEAKSII 79

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL--------GNKIFVKEVTHRLDNNASPGTHQLAEGD 245
           SP  +    ++    K+   G+ +        G  +++ EV   +         +L  GD
Sbjct: 1   SPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEV---IPGGDCYKDGRLKPGD 57

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
            L+ IN     G+S +EA+ +I  +K +          R
Sbjct: 58  QLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 8e-14
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 51  PRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQ-PGDKILKVNDMDMKGI 107
            R + FQK     +GI L         V  +  G     QG    GD+I ++N + +   
Sbjct: 2   SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61

Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDEY 134
           T E+    L  ++  I   +     E+
Sbjct: 62  TVEQLQKMLREMRGSITFKIVPSYREF 88

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 198 QTLRVQLSKSRKKDDFGIIL----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
           ++  VQ  K+   +  GI L     N   V  + H            L  GD + +IN  
Sbjct: 1   RSRLVQFQKN-TDEPMGITLKMNELNHCIVARIMH---GGMIHRQGTLHVGDEIREINGI 56

Query: 254 PTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQE 290
                +V++ +K++   +  ++  I        +Y+E
Sbjct: 57  SVANQTVEQLQKMLREMRGSITFKIVP------SYRE 87

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
            + V D I   NG+S+ N       ++LR+   ++T K+  
Sbjct: 43  TLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP 83

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 1e-13
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 48  EPDPRFITFQKEGS---VGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDM 102
             + R ++ ++  +   +G  + GG  + VGI+V+ V+PGS A  +GL+ GD+IL+VND 
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65

Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
            +  +T  EAV   L    ++ L V +    
Sbjct: 66  SLARVTHAEAVK-ALKGSKKLVLSVYSAGRI 95

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 15/102 (14%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPGTHQLAEGDV 246
           +S E +   V L +++  +  G  +      G  I+V  V       +      L  GD 
Sbjct: 5   SSGEVRL--VSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEP----GSLAEKEGLRVGDQ 58

Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR--EVPRPT 286
           +L++N+     ++  EA K +  SK+ L L++     +  P+
Sbjct: 59  ILRVNDKSLARVTHAEAVKALKGSKK-LVLSVYSAGRISGPS 99

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 136 HVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            V      +   ++V D+I+  N  SL  V +  AV+ L+ S   + L V   
Sbjct: 41  LVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKK-LVLSVYSA 92

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 49  PDPRFITFQK-EGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQGL-QPGDKILKVND 101
           P  + IT ++    +G  + GG       + I+V  V     AS  G  + GD+I+ VN 
Sbjct: 1   PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNG 60

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIV 127
             ++G+T EEAV  L   +  + L+V
Sbjct: 61  QSLEGVTHEEAVAILKRTKGTVTLMV 86

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 9e-06
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 14/91 (15%)

Query: 197 PQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGTHQLAEGDVL 247
           PQ   + L +    D  G  I+G          I+VK V       A+    +L  GD +
Sbjct: 1   PQCKSITLERG--PDGLGFSIVGGYGSPHGDLPIYVKTVF---AKGAASEDGRLKRGDQI 55

Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTI 278
           + +N    +G++ +EA  ++  +K  ++L +
Sbjct: 56  IAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 86

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
            +K  D+I++ NG SLE V +  AV +L+ +  TVTL V
Sbjct: 48  RLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 86

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 16/94 (17%)

Query: 50  DPRFITFQKEGS--VGIRLTGG--------------NKVGIFVTAVQPGSPASLQGLQPG 93
             + +  QK+ S   G  L G                    ++ +V  G  A   GL+ G
Sbjct: 5   KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 64

Query: 94  DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
           D +++VN  ++  +   + V  +    + + + V
Sbjct: 65  DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 98

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (93), Expect = 8e-05
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           +++ D ++  NG ++  V +   V ++R  G+T+ +KV  
Sbjct: 61  LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 100

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
           L  GD L+++N      +  ++   +I      L + +   
Sbjct: 61  LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 101

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           +  PR +T +K     +G  + GG  +++GIF++ V P S A   GLQ GD++L VND+D
Sbjct: 13  QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVD 72

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR 131
            + I   +AV  +L    +I + V+   
Sbjct: 73  FQDIEHSKAVE-ILKTAREISMRVRFFS 99

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 10/48 (20%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
            ++  D++++ N +  +++E+  AV++L+ +   ++++VR     P+S
Sbjct: 58  GLQEGDQVLAVNDVDFQDIEHSKAVEILK-TAREISMRVRFF-SGPSS 103

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IF+ +V      ++      L EGD +L +N+     +   +A +++ +++E +S+ +R 
Sbjct: 43  IFISKVIP----DSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTARE-ISMRVRF 97

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 3e-13
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
             D + +        S+G+ + GG    +GI++T V PGS A   GL+ GD+IL+VN   
Sbjct: 18  GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRS 77

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR 131
              I  +EAV  L S    + L V++  
Sbjct: 78  FLNILHDEAVRLLKS-SRHLILTVKDVG 104

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 187 RRIVLPASPEPQTLRVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPGTHQ 240
           RR  L         +V L         G+ +      G  I++  V       +      
Sbjct: 9   RRSTLHLLQGGDEKKVNLVL-GDGRSLGLTIRGGAEYGLGIYITGVDP----GSEAEGSG 63

Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLP 295
           L  GD +L++N      +   EA +L+ SS+  L LT++     P A        
Sbjct: 64  LKVGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVKDVGRLPHARTTVDETK 117

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 144 DSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           +   +KV D+I+  NG S  N+ +  AV++L+ S   + L V+    LP +   
Sbjct: 60  EGSGLKVGDQILEVNGRSFLNILHDEAVRLLK-SSRHLILTVKDVGRLPHARTT 112

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 48  EPDPRFITFQKEGS--VGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
           E   + +     GS  +G  ++ G   K GIF++ V+PGS ++  GL+ GD+I++VN +D
Sbjct: 6   ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD 65

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
              +  +EAV  L S +     IV     E 
Sbjct: 66  FSNLDHKEAVNVLKSSRSLTISIVAAAGREL 96

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 12/99 (12%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGD 245
           P + E +  +V +S        G  I         IF+  V       +      L  GD
Sbjct: 2   PGNRENKEKKVFISL-VGSRGLGCSISSGPIQKPGIFISHVKP----GSLSAEVGLEIGD 56

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
            ++++N      +  KEA  ++ SS+  L+++I     R
Sbjct: 57  QIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAAAGR 94

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 136 HVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           HV          +++ D+I+  NG+   N+++  AV VL+ S S +T+ +   
Sbjct: 40  HVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAA 91

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 5e-13
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 48  EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPA--SLQGLQPGDKILKVND 101
             +   I  + +  G  G  + GG   K+ + V+ V PG+PA   +  L  GD+++ +N 
Sbjct: 6   HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 65

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQ 128
            D+   T ++ VLF+ +  ++    + 
Sbjct: 66  RDIAEHTHDQVVLFIKASCERHSGELM 92

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 5e-09
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLL 248
           P    + +++    +   FG  +         + V  V       A     +L EGD ++
Sbjct: 5   PHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGDQVV 61

Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQ 289
            IN       +  +    I +S E+ S  +   V     Y 
Sbjct: 62  LINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYD 102

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 6e-06
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSG----STVTLKVRRRIVLPASPE 196
           +   D+++  NG  +    +   V  ++ S       + L VR   V     E
Sbjct: 54  LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEE 106

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.0 bits (153), Expect = 5e-13
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 52  RFITFQKEG--SVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
             +T  K G  S GI +  G           GIF+  + P SPA L G L+ GD+IL +N
Sbjct: 5   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 64

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQ 128
             D++  T +  +  +     +I L +Q
Sbjct: 65  GKDVRNSTEQAVIDLIKEADFKIELEIQ 92

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
            +KV DRI+S NG  + N      + +++++   + L+++ 
Sbjct: 53  RLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 93

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.2 bits (99), Expect = 9e-06
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IF+K +   + ++ +    +L  GD +L +N       + +    LI  +  K+ L I+ 
Sbjct: 37  IFIKGI---VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 93

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 5e-13
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 47  VEPDPRFITFQKE--GSVGIRLTG------GNKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
           V  +   +    +     G++L G             V  ++P SPA   G LQ GD++L
Sbjct: 5   VHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVL 64

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
            +N +  +  T EEA   L        ++++   D
Sbjct: 65  SINGIATEDGTMEEANQLLRDAALAHKVVLEVEFD 99

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
           ++V DR++S NG++ E+     A Q+LRD+     + + 
Sbjct: 57  LQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLE 95

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 208 RKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 267
           +        L +   V  +     ++ +     L  GD +L IN   T+  +++EA +L+
Sbjct: 27  QGGIFATETLSSPPLVCFI---EPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLL 83

Query: 268 DSSKEKLSLTIRRE 281
             +     + +  E
Sbjct: 84  RDAALAHKVVLEVE 97

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.6 bits (152), Expect = 7e-13
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           +        G R++GG      I VT V     A    L+PGD I+ +N    + +   E
Sbjct: 10  VDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAE 69

Query: 112 AVLFLLSLQDQIHLIVQNRRD 132
           A   +      + L +     
Sbjct: 70  AQSKIRQSASPLRLQLDRSSG 90

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 144 DSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           ++  ++  D I++ NG S EN+ +  A   +R S S + L++ R 
Sbjct: 44  EAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRS 88

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 213 FGI-ILGNKIFVKEVTHRLDNNASP-GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 270
           +G  I G + F   +               L  GD+++ IN    + M   EA+  I  S
Sbjct: 18  WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS 77

Query: 271 KEKLSLTIRREVPRPTA 287
              L L + R    P++
Sbjct: 78  ASPLRLQLDRS-SGPSS 93

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 8e-13
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 49  PDPRFITFQK-EGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
                +  ++    +G+ L  G        G+++  + PGSPA+  G L  GD+IL+VN 
Sbjct: 7   GYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNG 66

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
             + G+    AV  +     ++  +V   + + E       G S
Sbjct: 67  SSLLGLGYLRAVDLIRHGGKKMRFLV--AKSDVETAKKIHSGPS 108

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEGD 245
           +        V+L +       G+I G         ++++ +   L  + +    +L+ GD
Sbjct: 3   SGSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTL---LPGSPAAADGRLSLGD 59

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQEST 292
            +L++N     G+    A  LI    +K+   + +          S 
Sbjct: 60  RILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSG 106

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            + + DRI+  NG SL  + Y  AV ++R  G  +   V + 
Sbjct: 54  RLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 50  DPRFITFQKEGSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
           D +  T    G +GIR+ GG        ++G ++  + PG  A   G L  G ++L+ N 
Sbjct: 21  DSKDHTVSGNG-LGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNG 79

Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQ 128
           + +   T EE    +     +  + V+
Sbjct: 80  IPLTSKTYEEVQSIISQQSGEAEICVR 106

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 7e-08
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
            ++ ++       ++  T +L EG  +L+ N  P    + +E + +I     +  + +R 
Sbjct: 51  AYIAKIL---PGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL 107

Query: 281 EVPRP 285
           ++   
Sbjct: 108 DLNMS 112

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 6/43 (13%), Positives = 16/43 (37%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
            +    +++  NG+ L +  Y     ++        + VR  +
Sbjct: 67  KLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDL 109

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 50  DPRFITFQKE--GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
                   KE    +G  L GG       I V  V P   AS +G +Q G+++L +N   
Sbjct: 8   GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKS 67

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR 131
           +KG T  +A+  L   ++    ++  R+
Sbjct: 68  LKGTTHHDALAILRQAREPRQAVIVTRK 95

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
            I+  + ++S NG SL+   +  A+ +LR +       +  R + P +   
Sbjct: 53  TIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPD 103

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
           +   + V +    +    G  + G        I V  V     N  +     + +G+ +L
Sbjct: 5   QLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRV---FPNGLASQEGTIQKGNEVL 61

Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQE 290
            IN     G +  +A  ++  ++E     I      P A  +
Sbjct: 62  SINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPD 103

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (151), Expect = 2e-12
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 36  PGSPDLFSIFFVEP-DPRFITFQKEGSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-L 90
            G+  +FS   +   D R +  +KEGS+ + L GG       + V+AV  G  A   G +
Sbjct: 3   EGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGV 62

Query: 91  QPGDKILKVNDMDMKGITREEAVLFL----LSLQDQIHLIVQ 128
             GD+I+ +N   +   T  EA   L        D I L+V 
Sbjct: 63  VKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 10/110 (9%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDV 246
           P     + +R+   K     D  +  G      K+ V  V    +  A+     + +GD 
Sbjct: 11  PEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAV---YEGGAAERHGGVVKGDE 67

Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR--PTAYQESTTL 294
           ++ IN       ++ EA   +  +  +    I   V    P  Y +  T 
Sbjct: 68  IMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTF 117

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 10/56 (17%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDS----GSTVTLKVRRRIVLPASPEPQ 198
            +   D IM+ NG  + +     A   L+ +    G  + L V         P  +
Sbjct: 61  GVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV------CPPKE 110

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 54  ITFQK-EGSVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
           +  +K E  +GI + G          K+GIFV  V  G  A   G +Q  D+I++V+ + 
Sbjct: 6   VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 65

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR 131
           + G+T+  A   L + +  +  ++   +
Sbjct: 66  LVGVTQNFAATVLRNTKGNVRFVIGREK 93

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            I+VND+I+  +G+SL  V    A  VLR++   V   + R 
Sbjct: 51  RIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 92

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IFVK V    +  A+    ++   D +++++     G++   A  ++ ++K  +   I R
Sbjct: 35  IFVKTV---TEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 91

Query: 281 EVP 283
           E P
Sbjct: 92  EKP 94

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 14/105 (13%)

Query: 33  AVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGG----NKVGIFVTAVQPGSPASLQ 88
           +V P S      F V+     +  +    +GI ++          + ++ ++ GS A   
Sbjct: 4   SVIPSS----GTFHVK-----LPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRT 54

Query: 89  G-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G L+ GDK+L ++++ +   + E+AV  L   +D + L ++   D
Sbjct: 55  GTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 99

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 12/95 (12%)

Query: 195 PEPQTLRVQLSKSRKKDDFGIIL--------GNKIFVKEVTHRLDNNASPGTHQLAEGDV 246
           P   T  V+L K +   + GI +        G+ + + ++      + +  T  L  GD 
Sbjct: 7   PSSGTFHVKLPK-KHSVELGITISSPSSRKPGDPLVISDI---KKGSVAHRTGTLELGDK 62

Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
           LL I+N   D  S+++A +++   ++ + L IR++
Sbjct: 63  LLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 97

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            +++ D++++ + + L++     AVQ+L+     V LK+R+ 
Sbjct: 56  TLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 97

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 49  PDPRFITFQKE--GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
             P  +   K    ++GI LT     NK  I +  ++P S     G L PGD IL ++  
Sbjct: 14  SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73

Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
            M+  +  EA   L S+ +++ L +     + +  +    G S
Sbjct: 74  SMEHCSLLEATKLLASISEKVRLEIL-PVPQSQRPLRPSSGPS 115

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 8e-06
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL-------GNKIFVKEVTHRLDNNASPGTHQLAEGDV 246
           +     L V++ K+      GI L        + I +  +      +    +  L  GD 
Sbjct: 11  ANASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKP---ASVVDRSGALHPGDH 66

Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
           +L I+    +  S+ EA KL+ S  EK+ L I       
Sbjct: 67  ILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQ 105

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
           +   D I+S +G S+E+     A ++L      V L++   
Sbjct: 61  LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPV 101

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 47  VEPDPRFITFQKEGS--VGIRLTGG------NKVGIFVTAVQPGSPASLQGL-QPGDKIL 97
           V  +   +    +     GI+L G             ++ ++  SPA   G+ Q GD+++
Sbjct: 12  VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 71

Query: 98  KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
            +N +  +  T EEA   L        + ++   D  E V+ S
Sbjct: 72  AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPS 114

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
              +++ DR+M+ NG+  E+  +  A Q+LRDS  T  + +     +  S  P +
Sbjct: 61  CGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSS 115

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 14/100 (14%)

Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK---------IFVKEVTHRLDNNASPGTHQLAEGD 245
             +T  V L+       FGI + G+            +  +     ++ +     L  GD
Sbjct: 13  HTETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYI---EADSPAERCGVLQIGD 68

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
            ++ IN  PT+  + +EA +L+  S     +T+  E    
Sbjct: 69  RVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA 108

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 48  EPDPRFITFQKEGS-VGIRLTGG--NKVGIFVTAVQPGSPASLQGLQ-PGDKILKVNDMD 103
           + D   +  +K     G  + GG   K+ ++V  +    PA   G    GD+I+++N   
Sbjct: 9   DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGES 68

Query: 104 MKGITREEAVLFLLSLQDQIHLIVQ 128
            + +T   A+  + S   ++ L+++
Sbjct: 69  TRDMTHARAIELIKSGGRRVRLLLK 93

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGD 245
            +  +     V + K      FG  I G +     ++V  +    ++  +    ++  GD
Sbjct: 5   SSGQDFDYFTVDMEKG--AKGFGFSIRGGREYKMDLYVLRL---AEDGPAIRNGRMRVGD 59

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
            +++IN   T  M+   A +LI S   ++ L ++R    
Sbjct: 60  QIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS 98

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 8e-05
 Identities = 11/43 (25%), Positives = 26/43 (60%)

Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           +  ++V D+I+  NG S  ++ +  A+++++  G  V L ++R
Sbjct: 52  NGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR 94

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 54  ITFQKEGS-VGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
           IT ++  S +G  + GG       +   IF+T + PG  A+  G L+  D IL VN++D+
Sbjct: 5   ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64

Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRD 132
           + +T   AV  L      + L V  R+ 
Sbjct: 65  REVTHSAAVEALKEAGSIVRLYVMRRKP 92

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           IF+ ++       A+    +L   D +L +N      ++   A + +  +   + L + R
Sbjct: 33  IFITKII---PGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 89

Query: 281 EVP 283
             P
Sbjct: 90  RKP 92

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            ++VND I+  N + +  V +  AV+ L+++GS V L V RR
Sbjct: 49  RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 90

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (145), Expect = 6e-12
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           ++       G RL GG    + + +++++ G  AS   ++ GD +L ++ +  +G+T  E
Sbjct: 9   VSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLE 68

Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           A   + +    +++ +Q R            G S
Sbjct: 69  AQNKIKACTGSLNMTLQ-RASAAAKSEPVSSGPS 101

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 8/53 (15%), Positives = 26/53 (49%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
           H+++ D ++S +G+S + + +  A   ++    ++ + ++R      S    +
Sbjct: 46  HVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSS 98

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 213 FGI-ILGNKIFVKEVTHRLDNNASPG-THQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 270
           +G  + G K F   +T     +        +  GDV+L I+     GM+  EA+  I + 
Sbjct: 17  WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76

Query: 271 KEKLSLTIRREVPRP 285
              L++T++R     
Sbjct: 77  TGSLNMTLQRASAAA 91

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (144), Expect = 9e-12
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 54  ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
           +        G RL+GG      + +T + PGS A+   L PGD IL ++    + +T  +
Sbjct: 9   VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 68

Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
           A   + +   Q+ L +  R +          G S
Sbjct: 69  AQDRIKAASYQLCLKID-RAETRLWSPQVSSGPS 101

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
           ++   D I++ +G   E++ +  A   ++ +   + LK+ R      SP+
Sbjct: 46  NLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWSPQ 95

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 213 FGI-ILGNKIFVKEVTHRLDNNASP-GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 270
           +G  + G   F + +        S      L  GDV+L I+   T+ M+  +A+  I ++
Sbjct: 17  WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76

Query: 271 KEKLSLTIRREVPRP 285
             +L L I R   R 
Sbjct: 77  SYQLCLKIDRAETRL 91

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 51  PRFITFQK-EGSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGL-QPGDKILKVN 100
                  + E  +G  + GG           GIFV+ +  G  A   G  Q GD++L +N
Sbjct: 8   RHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN 67

Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQ 128
            +D+     + AV  L +    I L+++
Sbjct: 68  GVDVTEARHDHAVSLLTAASPTIALLLE 95

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 186 RRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGD 245
           R    L  S       +   K       G      IFV  +       A+     L  GD
Sbjct: 8   RHVACLARSERGLGFSIAGGKGSTPYRAG---DAGIFVSRIAE---GGAAHRAGTLQVGD 61

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
            +L IN           A  L+ ++   ++L + RE   
Sbjct: 62  RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGS 100

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            ++V DR++S NG+ +    +  AV +L  +  T+ L + R 
Sbjct: 56  TLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE 97

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 2e-11
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 37  GSPDLFSIFFVEPDPRFITFQ---KEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-L 90
           GS  LF+    +    F++          G  + GG      + V +V P  PA+  G +
Sbjct: 4   GSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKM 63

Query: 91  QPGDKILKVNDMDMKGITREEAVLFLLSLQ--DQIHLIVQNRRDE 133
           + GD I+ +N++ + G T  + V    S+     ++L++      
Sbjct: 64  ETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL 108

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 13/110 (11%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPGTHQLAEGD 245
            +  +   L   L KS     FG  +         + VK V   + +  +    ++  GD
Sbjct: 13  ASQLKGTFLSTTLKKSNM--GFGFTIIGGDEPDEFLQVKSV---IPDGPAAQDGKMETGD 67

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 293
           V++ IN     G +  +  KL  S    + ++L + R  P P   ++   
Sbjct: 68  VIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRRRIVLPASPEP 197
            ++  D I+  N + +    +   V++ +    G +V L + R   LP  PE 
Sbjct: 62  KMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPED 114

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 49  PDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG-LQPGD 94
           P  R +  QK     +GI + GG              GIF++ V P   A   G L+ G 
Sbjct: 8   PGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67

Query: 95  KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           ++L+VN   + G+T  EAV  L S+ D + ++V +  +
Sbjct: 68  RLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE 105

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            ++V  R++  N  SL  + +G AVQ+LR  G T+T+ V   
Sbjct: 62  RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 19/108 (17%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------------IFVKEVTHRLDNNASP 236
             S  P    + + K+   +  GI I G                IF+ +V       A+ 
Sbjct: 3   SGSSGPGLRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKV---SPTGAAG 58

Query: 237 GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
              +L  G  LL++N     G++  EA +L+ S  + L++ +      
Sbjct: 59  RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFES 106

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 2e-11
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 49  PDPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
            DPR IT  K+  G VG            +T++   S A+  GL     I ++N  ++ G
Sbjct: 3   MDPRTITMHKDSTGHVGFIFKN-----GKITSIVKDSSAARNGLLTEHNICEINGQNVIG 57

Query: 107 ITREEAVLFLLSLQDQIHLIV 127
           +   +    L +    + + +
Sbjct: 58  LKDSQIADILSTSGTVVTITI 78

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 144 DSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
               +     I   NG ++  ++      +L  SG+ VT+ +
Sbjct: 37  ARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
           + +P+T+ +       KD  G  +G      ++T  + ++++     L     + +IN  
Sbjct: 2   AMDPRTITMH------KDSTGH-VGFIFKNGKITSIVKDSSAARNGLLT-EHNICEINGQ 53

Query: 254 PTDGMSVKEARKLIDSSKEKLSLTI 278
              G+   +   ++ +S   +++TI
Sbjct: 54  NVIGLKDSQIADILSTSGTVVTITI 78

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 3e-11
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 54  ITFQK-EGSVGIRLTGG-------NKVGIFVTAVQPGSPASLQGL-QPGDKILKVNDMDM 104
           +   K    +G  + GG           I++T +  G  A   G  Q GD++L VN+ ++
Sbjct: 5   VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 64

Query: 105 KGITREEAVLFLLSLQDQIHLIVQ 128
           + +  EEAV  L +  D ++L V 
Sbjct: 65  QDVRHEEAVASLKNTSDMVYLKVA 88

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 12/42 (28%), Positives = 26/42 (61%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
            +++ DR+++ N  +L++V +  AV  L+++   V LKV + 
Sbjct: 49  RLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP 90

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 200 LRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
           + V L K  K   F I  G         N I++ ++   ++  A+    +L  GD LL +
Sbjct: 3   MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKI---IEGGAAQKDGRLQIGDRLLAV 59

Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
           NN     +  +EA   + ++ + + L + +
Sbjct: 60  NNTNLQDVRHEEAVASLKNTSDMVYLKVAK 89

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 59  EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
              +G  +  G      + ++  G  A   G++ G +I+++N   +     E+ V  L +
Sbjct: 12  RYQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN 66

Query: 119 LQDQIHLIV 127
              +IH+  
Sbjct: 67  AVGEIHMKT 75

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 7/78 (8%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 202 VQLSKSRKKDDFGI-ILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
           V + +   +   G  +    I        L          +  G  +++IN         
Sbjct: 4   VLIRRPDLRYQLGFSVQNGII------CSLMRGGIAERGGVRVGHRIIEINGQSVVATPH 57

Query: 261 KEARKLIDSSKEKLSLTI 278
           ++   ++ ++  ++ +  
Sbjct: 58  EKIVHILSNAVGEIHMKT 75

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
           ++V  RI+  NG S+    +   V +L ++   + +K      +PA+
Sbjct: 38  VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK-----TMPAA 79

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (141), Expect = 3e-11
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 51  PRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
           PR I F   EG +G  L G     + V  + P   ASL G + GD I+ +  +D K +T 
Sbjct: 16  PRGIHFTVEEGDLGFTLRGNTP--VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTV 73

Query: 110 EEAVLFLLSL-QDQIHLIVQNRRDE 133
            E +  L S   +++ + V +  D 
Sbjct: 74  SEVMKLLKSFGGEEVEMKVVSLLDS 98

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (86), Expect = 9e-04
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 196 EPQTLRVQLSKSRKKDDFGIIL--GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
            P+ +        ++ D G  L     + V  +      + S       EGD ++ I   
Sbjct: 15  PPRGIHFT----VEEGDLGFTLRGNTPVQVHFLDP----HCSASLAGAKEGDYIVSIQGV 66

Query: 254 PTDGMSVKEARKLIDSSK-EKLSLTIRREVPRPTA 287
               ++V E  KL+ S   E++ + +   +   ++
Sbjct: 67  DCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSS 101

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 4e-11
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 12/95 (12%)

Query: 49  PDPRFITFQKE-GSVGIRLTGG----------NKVGIFVTAVQPGSPASLQG-LQPGDKI 96
                +   ++ GS+G  + GG          +  GIFV+ +    PA+ +G LQ  D+I
Sbjct: 7   GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66

Query: 97  LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
           ++VN  D+   T ++AV    + ++ I + V  R 
Sbjct: 67  IEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRT 101

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
            ++++DRI+  NG  L    +  AV+  + +   + ++V RR   P+S
Sbjct: 59  GLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS 106

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 177 SGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNK-IFVKEVTHRLDNNAS 235
           SG ++TL + R        +  +L   +   R   D      ++ IFV ++    D+  +
Sbjct: 6   SGKSLTLVLHR--------DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIV---DSGPA 54

Query: 236 PGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
                L   D ++++N       +  +A +   ++KE + + + R    P+
Sbjct: 55  AKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPS 105

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (137), Expect = 7e-11
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 35  QPGSPDLFSIFFVEPDPRF-ITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQP 92
           +PG  D F +   + D    I+       G   T     GI+V A+ P   A   G +  
Sbjct: 1   KPG--DTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHK 58

Query: 93  GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           GD++L VN + ++G T ++AV  L +    +HL+++  + 
Sbjct: 59  GDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV 98

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
              I   DR+++ NG+SLE   +  AV+ LR++G  V L + + 
Sbjct: 53  DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 16/100 (16%)

Query: 197 PQTLRVQLSKSRKKDDFGIILGNK------------IFVKEVTHRLDNNASPGTHQLAEG 244
             T  V+L+K+       + +               I+VK +   +   A+    ++ +G
Sbjct: 3   GDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAI---IPKGAAESDGRIHKG 59

Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR-EVP 283
           D +L +N    +G + K+A + + ++ + + L + + +VP
Sbjct: 60  DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 99

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 54  ITFQKEGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGL-QPGDKILKVNDMDMKGITREE 111
           +  +K G +G  +    +K  + ++ +  G  A   GL Q GD IL VND  +  ++ + 
Sbjct: 7   LFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDS 66

Query: 112 AVLFLLSLQDQIHLIVQNRRDE 133
           A+  L  +  + H+++  R  E
Sbjct: 67  ALEVLRGIASETHVVLILRGPE 88

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQL 204
           S  I+  D I++ N   L ++ Y +A++VLR   S   + +  R     +   +T     
Sbjct: 42  SGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGD 101

Query: 205 SKSR 208
              +
Sbjct: 102 GTPK 105

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 199 TLRVQLSKSRKKDDFGIILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
            + V+L K RK    G ++  +     + + ++   +   A+  +  +  GD++L +N+ 
Sbjct: 2   VISVRLFK-RKVGGLGFLVKERVSKPPVIISDL---IRGGAAEQSGLIQAGDIILAVNDR 57

Query: 254 PTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
           P   +S   A +++     +  + +    P        TT  G
Sbjct: 58  PLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 100

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 54  ITFQKEGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
           +       +G+++ GG      ++G F+T V+ GS A + G L+ GD++L+ N   + G 
Sbjct: 24  MPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGA 83

Query: 108 TREEAVLFLLSL--QDQIHLIVQ 128
           T EE    +L    + Q+ +IV 
Sbjct: 84  TNEEVYNIILESKSEPQVEIIVS 106

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 186 RRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGD 245
           +R  +   S     L+V   K       G       F+ +V      + +     L  GD
Sbjct: 20  KRTTMPKDSGALLGLKVVGGKMTDLGRLGA------FITKVK---KGSLADVVGHLRAGD 70

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRR 280
            +L+ N  P  G + +E   +I  SK   ++ + + R
Sbjct: 71  EVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 107

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRR 187
           ++  D ++  NG  L          ++ +S     V + V R
Sbjct: 66  LRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 107

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 12/82 (14%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 49  PDPRFITFQK--EGSVGIRLTGGNKVGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMK 105
              + +  +K  +  +G  +       + ++ +  G  A     L  GD++L++N ++++
Sbjct: 17  ETVKIVRIEKARDIPLGATVRNEMD-SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 75

Query: 106 GITREEAVLFLLSLQDQIHLIV 127
           G    E    L  +   +  ++
Sbjct: 76  GKDVNEVFDLLSDMHGTLTFVL 97

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 202 VQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGM 258
           V++ K+R     G  +    + + +  +   +   A+  +  L EGD +L+IN     G 
Sbjct: 22  VRIEKARDIP-LGATVRNEMDSVIISRI---VKGGAAEKSGLLHEGDEVLEINGIEIRGK 77

Query: 259 SVKEARKLIDSSKEKLSLTI 278
            V E   L+      L+  +
Sbjct: 78  DVNEVFDLLSDMHGTLTFVL 97

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
            +   D ++  NG+ +   +      +L D   T+T  +
Sbjct: 59  LLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 97

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 53  FITFQKEGSVGIRLTGGNK----VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
           FI  QK   +G+ +           + +  +  G PA   G L  GD+I+ +N   + G+
Sbjct: 3   FIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGL 62

Query: 108 TREEAVLFLLSLQDQIHLIV 127
                   +  L++Q  + +
Sbjct: 63  PLSTCQSIIKGLKNQSRVKL 82

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKV 185
            + + D+IMS NG SL  +   T   +++   + S V L +
Sbjct: 44  KLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI 84

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 202 VQLSKSRKKDDFGIIL--------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
           V + K +K +  G+++           + +  + H      +  + +L  GD ++ IN  
Sbjct: 2   VFIEK-QKGEILGVVIVESGWGSILPTVIIANMMH---GGPAEKSGKLNIGDQIMSINGT 57

Query: 254 PTDGMSVKEARKLIDSSKEKLSLTIR 279
              G+ +   + +I   K +  + + 
Sbjct: 58  SLVGLPLSTCQSIIKGLKNQSRVKLN 83

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 50  DPRFITFQKEG-SVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
               +  +K   ++GI + GG    +    +  +Q G  A   G L+ G  IL+VN + +
Sbjct: 6   SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTL 65

Query: 105 KGITREEAVLFLLS-----LQDQIHLIVQNRR 131
           +G    EA   +        +D I  +V    
Sbjct: 66  RGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGST-----VTLKVRRRIVLPAS 194
            +KV   I+  NGL+L   E+  A +++ ++  T     +   V      P+S
Sbjct: 50  QLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGPSS 102

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
           +S    TL V++ KS       I  G   +  +  +       ++    QL  G V+L++
Sbjct: 2   SSGSSGTL-VRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60

Query: 251 NNHPTDGMSVKEARKLIDSS-----KEKLSLTIRREVPRPTA 287
           N     G   +EA ++I  +     ++ +   +      P++
Sbjct: 61  NGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGPSS 102

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 54  ITFQKEGS-VGIRLTGGNKVG--IFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
           +  ++  S  G R+ GG++ G  I + AV     A   G L PGD+++ V+ + + G T 
Sbjct: 13  VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72

Query: 110 EEAVLFLLSLQDQIHLIVQNRRD 132
              +  +        + +  RR 
Sbjct: 73  RYVIDLMHHAARNGQVNLTVRRK 95

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 5e-08
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGN----KIFVKEVTHRLDNNASPGTHQLAEGDVLL 248
            S   + L V L +      F I+ G+     I +  V   +   ++    +L  GD L+
Sbjct: 4   GSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAV---IAMGSADRDGRLHPGDELV 60

Query: 249 KINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREVP 283
            ++  P  G + +    L+  +    +++LT+RR+V 
Sbjct: 61  YVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRRRIV 190
            +   D ++  +G+ +    +   + ++  +     V L VRR+++
Sbjct: 52  RLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 48  EPDPRFITFQKE-GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
           E     +T +K    +G  L GG         + +  +  G+ +     +QPGD+IL++ 
Sbjct: 27  EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86

Query: 101 DMDMKGITREEAVLFLLSLQD-QIHLIVQNRRDEYEHVVASQRGDS 145
              M+G+TR EA   + +L D  + +++  RR   +    +  GDS
Sbjct: 87  GTAMQGLTRFEAWNIIKALPDGPVTIVI--RRKSLQSKETTAAGDS 130

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 15/93 (16%)

Query: 51  PRFITFQKEGS---VGIRLTGGNKV-----------GIFVTAVQPGSPASL-QGLQPGDK 95
            R +   K GS   +G  +  G  V           GIF++ + PG  A     L   D+
Sbjct: 3   HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDE 62

Query: 96  ILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
           +++VN +++ G T ++    +++    + + V+
Sbjct: 63  VIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK 95

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 18/95 (18%)

Query: 201 RVQLSKSRKKDDFGI-ILGNK--------------IFVKEVTHRLDNNASPGTHQLAEGD 245
           RV+L K       G  I                  IF+  +        +  T  LA  D
Sbjct: 5   RVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVP---GGLAESTGLLAVND 61

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
            ++++N     G ++ +   ++ ++   L +T++ 
Sbjct: 62  EVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKP 96

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 7/43 (16%), Positives = 19/43 (44%)

Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
           +  + VND ++  NG+ +          ++  + S + + V+ 
Sbjct: 54  TGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKP 96

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (133), Expect = 5e-10
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 18/116 (15%)

Query: 35  QPGSPDLFSIFFVEPDPR--FITFQKEGS--VGIRLTGG------NKVGIFVTAVQPGSP 84
             G PD +++     +     I     GS  +G+ L G         +GIF+ ++  G  
Sbjct: 8   LKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGA 67

Query: 85  ASLQG-LQPGDKILKVNDMDMKGITREEAVLFL-------LSLQDQIHLIVQNRRD 132
           A   G L+  D+++ VN   + G +  EA+  L        +++  I L++  R  
Sbjct: 68  AFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK---------IFVKEVTHRLDNNASPGTHQL 241
             S E  TL + L+ S      G+ + GNK         IF+K +   +   A+    +L
Sbjct: 19  LESSEQLTLEIPLNDSGSAG-LGVSLKGNKSRETGTDLGIFIKSI---IHGGAAFKDGRL 74

Query: 242 AEGDVLLKINNHPTDGMSVKEARKLIDSS-------KEKLSLTIRRE 281
              D L+ +N     G S  EA + +  S       +  + L I R 
Sbjct: 75  RMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-------TVTLKVRRR 188
            +++ND++++ NG +L       A++ LR S S        + L + RR
Sbjct: 73  RLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 53.8 bits (129), Expect = 7e-10
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 60  GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
            S+G+++T   + +G  +  V  G  A+  G+  G  + KV+D  +       A +   +
Sbjct: 3   ASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKA 62

Query: 119 LQDQIHLIVQNRRDEYEHVV 138
               + L  Q         V
Sbjct: 63  PGATVALTFQ-DPSGGSRTV 81

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS 207
           +     +   +   + + +   A    +  G+TV L  +       S   +T++V L K+
Sbjct: 34  VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDP-----SGGSRTVQVTLGKA 88

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 53.7 bits (129), Expect = 8e-10
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 54  ITFQKEGSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGIT 108
           +  +K   +GI + G        GI++ ++  G   +  G ++PGD +L+VND++ + ++
Sbjct: 7   LNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMS 66

Query: 109 REEAVLFLLSLQDQ---IHLIVQNRRDE 133
            ++AV  L  +  +   I L V   + E
Sbjct: 67  NDDAVRVLRDIVHKPGPIVLTV--AKLE 92

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGST---VTLKVRRR 188
            I+  D ++  N ++ EN+    AV+VLRD       + L V + 
Sbjct: 47  RIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL 91

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 13/105 (12%)

Query: 51  PRFITFQKE--GSVGIRLTGG---------NKVGIFVTAVQPGSPASL-QGLQPGDKILK 98
              +   ++     G  +              V   +  +  GSPA     L+ GD+IL 
Sbjct: 11  TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70

Query: 99  VNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRG 143
           VN   +  +   + V  +      + L +   ++E         G
Sbjct: 71  VNGQSIINMPHADIVKLIKDAGLSVTLRII-PQEELNSPSGPSSG 114

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 177 SGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASP 236
           SGS+ +L+    +V+      +     +  S  + + G  +     +  +   +D + + 
Sbjct: 3   SGSSGSLQTSD-VVIHRKEN-EGFGFVIISSLNRPESGSTITVPHKIGRI---IDGSPAD 57

Query: 237 GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
              +L  GD +L +N      M   +  KLI  +   ++L I  +    
Sbjct: 58  RCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELN 106

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 33/50 (66%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
           +KV DRI++ NG S+ N+ +   V++++D+G +VTL++  +  L +   P
Sbjct: 62  LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGP 111

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 17/107 (15%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 48  EPDPRFITFQK---EGSVGIRLTGG----NKVGIFVTAVQPGSPASL-QGLQPGDKILKV 99
           E +   +   +   +  +G+ +       + +GI+++ + P S A+    ++ GD+I+++
Sbjct: 17  ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQI 76

Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY-EHVVASQRGDS 145
           N ++++      A+L          L++     +  E  +    G S
Sbjct: 77  NGIEVQNREEAVALLTSEE-NKNFSLLIARPELQLDEGWMDDDSGPS 122

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-------IFVKEVTHRLDNNASPGTHQLAEGD 245
             E +   V L +   +D  G+ +           I++ E+     N+ +    ++ EGD
Sbjct: 15  REELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEI---DPNSIAAKDGRIREGD 71

Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
            +++IN         +    L     +  SL I R   +  
Sbjct: 72  RIIQINGIEVQNRE-EAVALLTSEENKNFSLLIARPELQLD 111

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 62  VGIRLTGGNKV--GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
           VG+ +T        + V    PG PA   G + GD I+ V+   +KG++  +  
Sbjct: 7   VGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVS 60

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 48  EPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
           + +   +T  K     G  +            +         GL  GD I+++N  +++ 
Sbjct: 8   QAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQN 64

Query: 107 ITREEAVLFLLSL--QDQIHLIVQ 128
           ++  E V  L       +  LI+ 
Sbjct: 65  LSHTEVVDILKDCPIGSETSLIIH 88

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
           +S + + + + + K      FG  + +    + V   LD    PG   L EGD++++IN 
Sbjct: 5   SSGQAELMTLTIVKG--AQGFGFTIADSPTGQRVKQILDIQGCPG---LCEGDLIVEINQ 59

Query: 253 HPTDGMSVKEARKLIDSSK--EKLSLTIRREVP 283
                +S  E   ++       + SL I R   
Sbjct: 60  QNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIVLPAS 194
           +   D I+  N  +++N+ +   V +L+D   GS  +L + R    P+S
Sbjct: 48  LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG-SGPSS 95

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (109), Expect = 8e-07
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 58  KEGSVGIRLT-GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLF 115
             G++G+ L    N   + ++ +     A+  G LQPGD ++ V   ++ G T  E +  
Sbjct: 34  TVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKL 93

Query: 116 LLSLQDQIHLIVQNRRD 132
           L ++     L ++  R 
Sbjct: 94  LQNITIGTVLQIKAYRG 110

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 177 SGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDNN 233
           SGS    +   +     S   + ++ +L+        G+++   G  + +  +   ++  
Sbjct: 6   SGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNL--GLGLVVIQNGPYLQISHL---INKG 60

Query: 234 ASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE-VPRPTAYQE 290
           A+     L  GDVL+ + +    G +++E  KL+ +      L +   R  +  P  +Q+
Sbjct: 61  AAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQD 120

Query: 291 S 291
           S
Sbjct: 121 S 121

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 60  GSVGIRLTG-GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
           G  G  ++  G   G+ V  V+ G+PA+  GL+ GD I+  N   +K I   E    L S
Sbjct: 12  GIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDS 69

Query: 119 LQDQIHLIVQNRRDEYEHVV 138
               + L +Q R D   +++
Sbjct: 70  KPSVLALNIQ-RGDSTIYLL 88

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 68  GGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
               +G  V+  +        GLQ GD  + +N +D+        +   ++   ++ L V
Sbjct: 15  DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 74

Query: 128 Q 128
           +
Sbjct: 75  E 75

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
           G+ + +V PGSPAS + L PG  I  +N M    +T   A L  +S+ + I++     + 
Sbjct: 4   GVQIDSVVPGSPAS-KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTD--QG 60

Query: 133 EYEHVVA 139
            +     
Sbjct: 61  TFHLKTG 67

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 73  GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
           G+ +  V  GSPA   GL+PGD IL + +  ++     E V   +  Q Q+ + ++
Sbjct: 32  GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA---EDVYEAVRTQSQLAVQIR 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	627
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	100.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.91
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.87
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.84
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.83
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.79
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.58
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.57
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.55
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.54
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.54
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.53
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.5
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.5
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.5
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.5
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.49
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.49
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.48
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.47
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.47
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.46
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.45
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.45
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.43
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.43
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.42
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.42
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.42
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.41
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.4
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.39
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.38
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.37
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.37
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.36
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.35
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.35
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.34
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.34
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.33
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.33
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.33
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.33
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.33
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.32
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.32
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.32
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.3
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.29
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.29
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.29
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.29
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.28
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.28
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.27
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.27
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.26
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.25
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.25
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.25
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.25
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.24
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.24
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.23
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.23
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.22
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.22
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.22
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.22
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.21
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.21
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.2
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.2
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.19
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.18
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.17
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.16
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.15
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.15
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.14
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.13
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.13
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.13
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.12
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.12
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.11
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.11
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.07
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.07
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.07
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.07
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.06
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.05
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.03
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.02
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.02
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.02
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.0
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.98
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.98
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.98
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.98
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.98
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.97
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.96
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.95
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.95
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.93
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.92
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.92
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.91
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.9
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.87
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.86
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.86
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.85
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.85
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.82
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.79
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.75
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.73
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.64
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.63
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.63
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.57
d1t0hb_	219	Guanylate kinase-like domain of the L-type calcium	98.4
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.34
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.25
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.11
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.08
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.03
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.99
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	97.97
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.81
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	97.5
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	97.28
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	97.18
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	97.04
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	97.01
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	97.0
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	96.97
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	96.9
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	96.84
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	96.79
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	96.75
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	96.71
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	96.69
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.63
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.61
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	96.59
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	96.53
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	96.43
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.42
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	96.32
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	96.31
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	96.28
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	96.25
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	95.9
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	95.71
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	95.64
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.58
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	95.39
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	95.37
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	95.31
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	94.77
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	94.61
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	94.61
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	94.58
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	94.48
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	94.45
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	94.31
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	93.93
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	93.56
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	93.09
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	93.05
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	92.17
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	91.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	91.3
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	90.91
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	90.27
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	90.16
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	88.97
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	87.92
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	87.87
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	87.83
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	87.83
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	86.36
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	86.22
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	82.81
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	82.67
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	82.54
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	81.65

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-33  Score=271.77  Aligned_cols=165  Identities=21%  Similarity=0.413  Sum_probs=145.5

Q ss_pred             hhccCCCCCceEEEeCccHHHHHHHHhhhCCCCcccCCC--------C-------CCC-CHHHHHHHHhccccc-----C
Q psy9827         446 VSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRK--------F-------NFI-LWATIKDTAMYQSSK-----E  504 (627)
Q Consensus       446 V~~~~~~~~RpvVl~Gp~k~~l~~~Ll~~~p~~f~~~~~--------~-------~Fv-s~e~f~~~i~~~~~~-----~  504 (627)
                      |+++++.++|||||+||+|++++++|++++|+.|..+++        +       ||| ++|+|+++++.|+|.     .
T Consensus         1 v~~~~~~~~Rpivi~Gp~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~   80 (199)
T d1kjwa2           1 VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYN   80 (199)
T ss_dssp             EEEEECCSCCCEEEESTTHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEET
T ss_pred             CccccCCCCCCEEEECcCHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeec
Confidence            677889999999999999999999999999999976322        1       798 689999999877654     5


Q ss_pred             Ccee-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC----CCCCHHHHHHHHHHHHHHHHH
Q psy9827         505 PGMY-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG----KDIKKEVKIKLFEQSQKLEKV  573 (627)
Q Consensus       505 ~~~Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~----~~~~e~~~~~~~~~~~~~e~~  573 (627)
                      |++|     +|++++++|++||||++ +++ .++...+.|+  +|||.|||++.+    ++.++++++++++++.++|++
T Consensus        81 g~~YGt~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~~i--~IfI~pps~e~l~~l~kr~~~~~i~~r~~~~~~~e~~  158 (199)
T d1kjwa2          81 SHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPI--AIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQE  158 (199)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCE--EEEECCSSHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccceeeeEEEehhcCCCcccccccchHHhhhhhhcccee--EEeeccccHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence            8899     89999999999999999 655 5555577889  999999996544    778888899999999999999


Q ss_pred             hcCcccEEEECCCHHHHHHHHHHHHHhhCCCCeeEeCCC
Q psy9827         574 WSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETK  612 (627)
Q Consensus       574 ~~~~fd~vi~n~~l~~~~~~l~~~i~~~~~~~~Wvp~~~  612 (627)
                      +.++||++|+|||+++|+++|+++|++++++|+|||+..
T Consensus       159 ~~~~fd~vI~Nddle~a~~~l~~iI~~~~~~~~WvP~~~  197 (199)
T d1kjwa2         159 FTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARE  197 (199)
T ss_dssp             HGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred             hhccCCEEEECcCHHHHHHHHHHHHHHhcCCCeeecCcc
Confidence            999999999999999999999999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=205.99  Aligned_cols=145  Identities=19%  Similarity=0.269  Sum_probs=123.2

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCC---------------CCCCHHHHHHHHhccccc-----CCcee-
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKF---------------NFILWATIKDTAMYQSSK-----EPGMY-  508 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~---------------~Fvs~e~f~~~i~~~~~~-----~~~~Y-  508 (627)
                      .+|||||+|||   |++|.++|++++|+.|..++++               ||||.++|+++++.|+|+     .|++| 
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YG   81 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeeccccee
Confidence            46899999999   9999999999999998764321               699999999999887754     48888 


Q ss_pred             ----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccCCCCCHHHHHHHHHHHHHHHHHhcCcccEEE
Q psy9827         509 ----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTI  582 (627)
Q Consensus       509 ----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi  582 (627)
                          +|++++++|++||||++ +++ .+++....|+  +|||.|||++.+... ++..+++.+++..+|..+.|+||++|
T Consensus        82 t~~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~~~--~IfI~pps~~~~~~~-~~~~~r~~~~~~~~e~~~~~~fD~vI  158 (178)
T d1kgda_          82 TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPF--VVFIAAPTITPGLNE-DESLQRLQKESDILQRTYAHYFDLTI  158 (178)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEE--EEEEECCSCCTTSCC-SHHHHHHHHHHHHHHHHHGGGCSEEE
T ss_pred             eeeecccchhccCceEEeccchhhhhhhhccccccc--eeeEeccccccccch-HHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence                88999999999999999 666 6665667788  999999998765333 34367777888788999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHh
Q psy9827         583 TLSGVDVWYRKTRELIEK  600 (627)
Q Consensus       583 ~n~~l~~~~~~l~~~i~~  600 (627)
                      +|+|+|+|+++|+++|+.
T Consensus       159 vNddle~a~~el~~iI~~  176 (178)
T d1kgda_         159 INNEIDETIRHLEEAVEL  176 (178)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHH
Confidence            999999999999999974

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.3e-22  Score=194.04  Aligned_cols=145  Identities=14%  Similarity=0.044  Sum_probs=115.8

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCC-CcccC--------CCC-------CCCCHHHHHHHHhccccc-----CCcee-
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPD-KFSAP--------RKF-------NFILWATIKDTAMYQSSK-----EPGMY-  508 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~-~f~~~--------~~~-------~Fvs~e~f~~~i~~~~~~-----~~~~Y-  508 (627)
                      .+.|||+|||   |++|+++|++.+|. .|..+        +++       ||||+++|+++++.|+|.     .||+| 
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            4789999999   99999999999995 45532        222       799999999999887654     59999 


Q ss_pred             ----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHHHhc
Q psy9827         509 ----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEKVWS  575 (627)
Q Consensus       509 ----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~~~~  575 (627)
                          +|+.++++|++||||++ +.+ .+++....|+  +|||.|||.+++     +|  .+++..++++.++ +.|..+.
T Consensus        82 t~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~--~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a-~~E~~~~  158 (205)
T d1s96a_          82 TSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHAR--SIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQA-VAEMSHY  158 (205)
T ss_dssp             EEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCE--EEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHHTTG
T ss_pred             cccchHHHHHhcCCceeecCcHHHHHHHHhhhcccc--eeeeeccchHHHHHHHHhcCCchHHHHHHHHHHH-HHHHHHH
Confidence                79999999999999999 555 4444455567  999999995543     44  3445455556555 4588889


Q ss_pred             CcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827         576 HVFTGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       576 ~~fd~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                      +.||+||+|||+++|+.+|+++|..+
T Consensus       159 ~~fD~vIvNddl~~a~~el~~iI~~e  184 (205)
T d1s96a_         159 AEYDYLIVNDDFDTALTDLKTIIRAE  184 (205)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.3e-21  Score=183.23  Aligned_cols=146  Identities=18%  Similarity=0.210  Sum_probs=117.2

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCcccCC--------CC-------CCCCHHHHHHHHhccccc-----CCcee--
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPR--------KF-------NFILWATIKDTAMYQSSK-----EPGMY--  508 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~--------~~-------~Fvs~e~f~~~i~~~~~~-----~~~~Y--  508 (627)
                      .|||||+||+   |+||+++|++++|+.|..++        ++       ||+|+++|+++++.|++.     .|++|  
T Consensus         1 ~rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~   80 (186)
T d1gkya_           1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS   80 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeec
Confidence            4899999999   99999999999999887632        21       799999999999877643     58888  


Q ss_pred             ---hHHhHHhCCCcEEEecC-Cce-eccc-cCCCCceeEEEEcCCCcccC-------CCCCHHHHHHHHHHHH-HHHHHh
Q psy9827         509 ---QGKDSMYQGKDSMYQGK-ESM-YQGK-DSMYQGKDSMYQGKDSMYQG-------KDIKKEVKIKLFEQSQ-KLEKVW  574 (627)
Q Consensus       509 ---~V~~v~~~gk~ciLdi~-~~l-~~~~-~~~~P~~~vIFI~ppsl~~~-------~~~~e~~~~~~~~~~~-~~e~~~  574 (627)
                         +|..++.+|++||+|++ +.+ .++. ..+.|+  +||+.|||.+.+       .+.+++++.++++++. +++..+
T Consensus        81 ~~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~--~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~~~  158 (186)
T d1gkya_          81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNAR--FLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE  158 (186)
T ss_dssp             EHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCE--EEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHhcCCCeEEecchHHHHHHHHHhhcccce--EEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh
Confidence               88999999999999999 555 3332 345678  999999995443       3455666766666654 366667


Q ss_pred             cCcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827         575 SHVFTGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       575 ~~~fd~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                      .++||+||+|+|++.|+++|.++|..+
T Consensus       159 ~~~fd~vI~N~dle~a~~~l~~iI~~e  185 (186)
T d1gkya_         159 TGAHDKVIVNDDLDKAYKELKDFIFAE  185 (186)
T ss_dssp             TTCSSEEEECSSHHHHHHHHHHHHHTC
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHHhc
Confidence            789999999999999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.8e-21  Score=182.75  Aligned_cols=147  Identities=14%  Similarity=0.152  Sum_probs=119.4

Q ss_pred             ceEEEeCcc---HHHHHHHHhhhCCCCcccCCCC---------------CCCCHHHHHHHHhccccc-----CCcee---
Q psy9827         455 RPVVLFGPV---ADLARDKLLKDFPDKFSAPRKF---------------NFILWATIKDTAMYQSSK-----EPGMY---  508 (627)
Q Consensus       455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~---------------~Fvs~e~f~~~i~~~~~~-----~~~~Y---  508 (627)
                      |||||+||+   |+||.++|++.+|+.|..++++               +|||+++|+++++.|++.     .|++|   
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~   80 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS   80 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecc
Confidence            899999999   9999999999999998764321               699999999999877653     58888   


Q ss_pred             --hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-------CCCCHHHHHHHHHHHHH-H-HHHhc
Q psy9827         509 --QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-------KDIKKEVKIKLFEQSQK-L-EKVWS  575 (627)
Q Consensus       509 --~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-------~~~~e~~~~~~~~~~~~-~-e~~~~  575 (627)
                        +|++++..|++|+++++ ..+ .++.....|+  +||+.|||.+.+       .+.++++..+++.++.. + +..+.
T Consensus        81 ~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~--~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~~~~~~~~~~~  158 (190)
T d1lvga_          81 KEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPI--YIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEP  158 (190)
T ss_dssp             HHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCE--EEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGST
T ss_pred             cchhhhhhcCCCceeecchHhhhhhhhhccccce--EEEEecchHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhc
Confidence              89999999999999999 555 5555577788  999999995433       34566667777776654 2 24456


Q ss_pred             CcccEEEECCCHHHHHHHHHHHHHhhCC
Q psy9827         576 HVFTGTITLSGVDVWYRKTRELIEKQQS  603 (627)
Q Consensus       576 ~~fd~vi~n~~l~~~~~~l~~~i~~~~~  603 (627)
                      |+||++|+|+|+|+|+++|+++|.++-.
T Consensus       159 ~~fd~iI~N~dle~a~~~l~~iI~~~~~  186 (190)
T d1lvga_         159 GLFDLVIINDDLDKAYATLKQALSEEIK  186 (190)
T ss_dssp             TTCSEEEECSSHHHHHHHHHHHTHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999887543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=1.3e-19  Score=171.16  Aligned_cols=142  Identities=14%  Similarity=0.076  Sum_probs=113.0

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCCC-------CCCCHHHHHHHHhccccc-----CCcee---
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRKF-------NFILWATIKDTAMYQSSK-----EPGMY---  508 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~~-------~Fvs~e~f~~~i~~~~~~-----~~~~Y---  508 (627)
                      .+.|||+||+   |+||+++|++++|..+.+       |+++       ||+|.++|+++++.+.+.     .+|+|   
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            4789999999   999999999999975554       2222       699999999999876643     24443   


Q ss_pred             ----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CCC--CHHHHHHHHHHHHHHHHHhc
Q psy9827         509 ----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDI--KKEVKIKLFEQSQKLEKVWS  575 (627)
Q Consensus       509 ----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~--~e~~~~~~~~~~~~~e~~~~  575 (627)
                          ++..+++.|++|+++++ ..+ .++.....|+  +|||.|||++.+     +|.  ++++.+++++++ ++|..+.
T Consensus        82 ~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~~~--~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl~~~-~~e~~~~  158 (182)
T d1znwa1          82 TLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAV--TVFLAPPSWQDLQARLIGRGTETADVIQRRLDTA-RIELAAQ  158 (182)
T ss_dssp             EEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSE--EEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHHHGG
T ss_pred             cccchhhhhhhcCCccccccccchhhhhhhcCccee--EEeeecccHHHHHHHhhhcCcchHHHHHHHHHHH-HHHHhhH
Confidence                89999999999999999 555 4444456677  999999995543     443  466677777765 5788999


Q ss_pred             CcccEEEECCCHHHHHHHHHHHH
Q psy9827         576 HVFTGTITLSGVDVWYRKTRELI  598 (627)
Q Consensus       576 ~~fd~vi~n~~l~~~~~~l~~~i  598 (627)
                      ++||+||+|||+++|+++|+++|
T Consensus       159 ~~fD~vI~Nddle~a~~~l~~iI  181 (182)
T d1znwa1         159 GDFDKVVVNRRLESACAELVSLL  181 (182)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHH
T ss_pred             hcCCEEEECcCHHHHHHHHHHHh
Confidence            99999999999999999999987

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.9e-15  Score=127.49  Aligned_cols=89  Identities=30%  Similarity=0.501  Sum_probs=80.9

Q ss_pred             CCceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      .+++.+.+.|. .+|||+|.++.+.|+||+.|.+||||+++||++||+|++|||.++.++++.+++.+++.++..|+|+|
T Consensus        18 ~~~r~v~l~k~~~glG~~i~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v   97 (117)
T d1uita_          18 EEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA   97 (117)
T ss_dssp             CCCEEEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEE
T ss_pred             CCCEEEEEEeCCCccCEEEEccCCCCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEE
Confidence            46788999886 48999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCccccee
Q psy9827         128 QNRRDEYEHV  137 (627)
Q Consensus       128 ~r~~~~~~~~  137 (627)
                      .+++..+...
T Consensus        98 ~~~p~~~~~~  107 (117)
T d1uita_          98 QYNPHVHQLS  107 (117)
T ss_dssp             CCCSCCCCCC
T ss_pred             EECCcceeee
Confidence            9877655443

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.1e-15  Score=121.66  Aligned_cols=81  Identities=25%  Similarity=0.421  Sum_probs=74.2

Q ss_pred             ceEEEeccCCceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          51 PRFITFQKEGSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        51 ~r~v~l~k~g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      |..|.+.+.++|||+|.++.  ..+++|..|.+||||+++||++||+|++|||.++.+++|.+++.+++.+++.++|+|.
T Consensus         2 p~~V~l~~~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~V~   81 (85)
T d1rgwa_           2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQ   81 (85)
T ss_dssp             EEEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEE
T ss_pred             CEEEEecCCCCCCEEEEeecCCCCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEE
Confidence            56788888889999999875  3579999999999999999999999999999999999999999999999999999999


Q ss_pred             eCC
Q psy9827         129 NRR  131 (627)
Q Consensus       129 r~~  131 (627)
                      |.+
T Consensus        82 R~~   84 (85)
T d1rgwa_          82 KSK   84 (85)
T ss_dssp             SCC
T ss_pred             ECC
Confidence            754

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=6.8e-15  Score=122.62  Aligned_cols=83  Identities=31%  Similarity=0.528  Sum_probs=74.1

Q ss_pred             CceEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      +.+.|.|.|. .+|||+|.|+.       ..|+||+.|.+||||+++| |++||+|++|||.++.++++.+++.+++.++
T Consensus         1 E~~~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~   80 (93)
T d1rgra_           1 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG   80 (93)
T ss_dssp             CEEEEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3567888876 48999998763       3589999999999999999 9999999999999999999999999999999


Q ss_pred             CeeEEEEEeCCc
Q psy9827         121 DQIHLIVQNRRD  132 (627)
Q Consensus       121 ~~V~L~v~r~~~  132 (627)
                      +.|+|+|.|..+
T Consensus        81 ~~v~L~v~R~~p   92 (93)
T d1rgra_          81 SIVRLYVMRRKP   92 (93)
T ss_dssp             TEEEEEEECSCC
T ss_pred             CEEEEEEEeCCC
Confidence            999999998653

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=120.79  Aligned_cols=83  Identities=27%  Similarity=0.542  Sum_probs=74.1

Q ss_pred             CCceEEEeccCCceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          49 PDPRFITFQKEGSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        49 ~~~r~v~l~k~g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      |+...+.+.+..+|||++.++.     ..|+||+.|.|||||+++| |++||+|++|||.++.++++.+++.+++.++..
T Consensus         3 pei~~v~l~~~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~   82 (92)
T d1t2ma1           3 PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSV   82 (92)
T ss_dssp             CEEEEEEEECSSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             CeEEEEEEeCCCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCe
Confidence            4556677777778999998863     2479999999999999999 999999999999999999999999999999999


Q ss_pred             eEEEEEeCC
Q psy9827         123 IHLIVQNRR  131 (627)
Q Consensus       123 V~L~v~r~~  131 (627)
                      |+|+|.|..
T Consensus        83 v~L~v~R~g   91 (92)
T d1t2ma1          83 VTLEVAKQG   91 (92)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence            999999854

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.8e-14  Score=118.05  Aligned_cols=81  Identities=30%  Similarity=0.551  Sum_probs=74.3

Q ss_pred             CceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      -||.+.+.|+ .+|||++.++. ..++||..|.+||||+++||++||+|++|||.++.+++|.+++.+++.+++.++|+|
T Consensus         3 ~Pr~v~l~k~~~g~Gf~i~~~~~~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~v   82 (91)
T d1g9oa_           3 LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV   82 (91)
T ss_dssp             CCEEEEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             CCEEEEEEECCCeeeEEEEecCCCCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            5899999886 48999999874 468999999999999999999999999999999999999999999999999999999


Q ss_pred             EeC
Q psy9827         128 QNR  130 (627)
Q Consensus       128 ~r~  130 (627)
                      .+.
T Consensus        83 ~~~   85 (91)
T d1g9oa_          83 VDP   85 (91)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            863

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.2e-14  Score=122.96  Aligned_cols=88  Identities=33%  Similarity=0.663  Sum_probs=80.0

Q ss_pred             CCCceEEEeccC-CceeEEEEccC-CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~~-~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      .+++|.|.+.|. ++|||+|.++. ..|+||+.|.+||+|+++| |++||+|++|||.++.++++.+++.+++.+++.++
T Consensus         7 ~~~~r~V~l~k~~~glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~   86 (102)
T d1tp5a1           7 PREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT   86 (102)
T ss_dssp             CCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEE
T ss_pred             CCCCEEEEEEeCCCcccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEE
Confidence            468899999886 58999999874 5699999999999999999 99999999999999999999999999999999999


Q ss_pred             EEEEeCCcccc
Q psy9827         125 LIVQNRRDEYE  135 (627)
Q Consensus       125 L~v~r~~~~~~  135 (627)
                      |+|.++++.|.
T Consensus        87 L~v~~~~~~~~   97 (102)
T d1tp5a1          87 IIAQYKPEEYS   97 (102)
T ss_dssp             EEEEECHHHHH
T ss_pred             EEEEECCcccc
Confidence            99998776554

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.9e-14  Score=120.62  Aligned_cols=80  Identities=36%  Similarity=0.662  Sum_probs=71.5

Q ss_pred             CceEEEeccC--CceeEEEEccC-----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHH
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN-----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLF  115 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~-----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~  115 (627)
                      +||.|.+.|.  ++|||+|.|+.           ..|+||+.|.+||||+++| |++||+|++|||.++.++++.+++.+
T Consensus         1 qpr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           1 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            4789999886  38999998763           2479999999999999999 99999999999999999999999999


Q ss_pred             HhcCCCeeEEEEEe
Q psy9827         116 LLSLQDQIHLIVQN  129 (627)
Q Consensus       116 l~~~g~~V~L~v~r  129 (627)
                      ++++++.|+|+|+|
T Consensus        81 lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          81 IRKAGNPVVFMVQS   94 (96)
T ss_dssp             HHTCCSSEEEEEEC
T ss_pred             HHcCCCeEEEEEEE
Confidence            99999999999986

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.2e-14  Score=116.01  Aligned_cols=82  Identities=22%  Similarity=0.486  Sum_probs=73.8

Q ss_pred             CceEEEeccC---CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          50 DPRFITFQKE---GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        50 ~~r~v~l~k~---g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      +.+.+.+.|.   ++|||+|.++. +.|+||+.|.+||||+++||++||+|++|||.++.++++.+++.+++.+++.|+|
T Consensus         6 e~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L   85 (91)
T d1m5za_           6 ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDL   85 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEE
T ss_pred             ceEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
Confidence            4567778774   37999999764 5799999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy9827         126 IVQNRR  131 (627)
Q Consensus       126 ~v~r~~  131 (627)
                      +|.|++
T Consensus        86 ~v~R~P   91 (91)
T d1m5za_          86 VISRNP   91 (91)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            999853

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.9e-14  Score=112.81  Aligned_cols=74  Identities=27%  Similarity=0.332  Sum_probs=67.6

Q ss_pred             EEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827          54 ITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN  129 (627)
Q Consensus        54 v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r  129 (627)
                      +++.|. ++|||++.++  .+++|+.|.+||||+++||++||+|++|||.++.++++.+++..+++++++++|+|.|
T Consensus         1 v~l~r~~~g~Gf~l~~~--~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R   75 (77)
T d2f5ya1           1 ITIPRGKDGFGFTICCD--SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR   75 (77)
T ss_dssp             EEEECBTTBTSEEEECS--SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEE
T ss_pred             CEEecCCCcccEEEECC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEE
Confidence            355664 5899999864  5799999999999999999999999999999999999999999999999999999987

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6e-14  Score=119.87  Aligned_cols=82  Identities=30%  Similarity=0.537  Sum_probs=73.8

Q ss_pred             CceEEEeccC-CceeEEEEccC----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL  117 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~  117 (627)
                      ....|.|.|. ++|||+|.|+.          +.++||+.|.|||||+++| |++||+|++|||.++.+++|.+|+.+++
T Consensus         8 ~~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk   87 (107)
T d1uhpa_           8 KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK   87 (107)
T ss_dssp             EEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CEEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHH
Confidence            4567888876 58999999862          4579999999999999999 9999999999999999999999999999


Q ss_pred             cCCCeeEEEEEeCC
Q psy9827         118 SLQDQIHLIVQNRR  131 (627)
Q Consensus       118 ~~g~~V~L~v~r~~  131 (627)
                      .++..+.|+|.|+.
T Consensus        88 ~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          88 TAKEPIVVQVLRRT  101 (107)
T ss_dssp             HCCSSEEEEEEECC
T ss_pred             hCCCcEEEEEEECC
Confidence            99999999998754

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.8e-14  Score=117.33  Aligned_cols=79  Identities=32%  Similarity=0.563  Sum_probs=71.0

Q ss_pred             eEEEeccC-CceeEEEEccC--------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          52 RFITFQKE-GSVGIRLTGGN--------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~~--------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..+.+.|. ++|||+|.++.        +.++||+.|.+||||+++||++||+|++|||.++.++++.+++.+++.++..
T Consensus        10 ~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~   89 (97)
T d1x5qa1          10 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA   89 (97)
T ss_dssp             EEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             EEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHHhCCCCE
Confidence            45666665 58999999763        3579999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeC
Q psy9827         123 IHLIVQNR  130 (627)
Q Consensus       123 V~L~v~r~  130 (627)
                      ++|+|.|.
T Consensus        90 v~l~v~R~   97 (97)
T d1x5qa1          90 VQMRVWRE   97 (97)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99999873

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.7e-14  Score=117.53  Aligned_cols=82  Identities=32%  Similarity=0.513  Sum_probs=73.4

Q ss_pred             CceEEEeccC-CceeEEEEccC----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL  117 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~  117 (627)
                      +...|.|.|. ++|||+|.+..          ..++||+.|.+||||+++| |++||+|++|||.++.++++.+++.+++
T Consensus         4 ~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk   83 (99)
T d1ozia_           4 DTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR   83 (99)
T ss_dssp             CEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHH
Confidence            5678888886 58999998642          2479999999999999999 9999999999999999999999999999


Q ss_pred             cCCCeeEEEEEeCC
Q psy9827         118 SLQDQIHLIVQNRR  131 (627)
Q Consensus       118 ~~g~~V~L~v~r~~  131 (627)
                      .++..|+|+|.|.+
T Consensus        84 ~~~~~v~L~v~R~~   97 (99)
T d1ozia_          84 NTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HSCSEEEEEEECCC
T ss_pred             CCCCeEEEEEEeCC
Confidence            99999999999854

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.1e-14  Score=116.05  Aligned_cols=80  Identities=30%  Similarity=0.479  Sum_probs=71.4

Q ss_pred             eEEEeccC-CceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          52 RFITFQKE-GSVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..|.|.|. .+|||+|.++.       ..|+||+.|.|||||+++| |++||+|++|||.++.++++.+++.+++.+++.
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~   82 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDM   82 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSE
T ss_pred             EEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCE
Confidence            35677775 48999999762       4689999999999999999 999999999999999999999999999999999


Q ss_pred             eEEEEEeCC
Q psy9827         123 IHLIVQNRR  131 (627)
Q Consensus       123 V~L~v~r~~  131 (627)
                      |+|+|.|.+
T Consensus        83 v~L~v~Rpg   91 (92)
T d2fe5a1          83 VYLKVAKPG   91 (92)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCC
Confidence            999999753

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.3e-14  Score=115.73  Aligned_cols=79  Identities=25%  Similarity=0.376  Sum_probs=73.4

Q ss_pred             ceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          51 PRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        51 ~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      +|.|.++|.  ++|||++.++.+.+++|+.|.+||||+++| |++||+|++|||.++.++++.++..+++.++..|+|++
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i   81 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI   81 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence            688999885  489999998877899999999999999999 99999999999999999999999999999888999998


Q ss_pred             Ee
Q psy9827         128 QN  129 (627)
Q Consensus       128 ~r  129 (627)
                      ..
T Consensus        82 ~p   83 (88)
T d1kwaa_          82 VP   83 (88)
T ss_dssp             EC
T ss_pred             Ee
Confidence            74

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=6.2e-14  Score=115.72  Aligned_cols=82  Identities=33%  Similarity=0.458  Sum_probs=74.0

Q ss_pred             CCceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      .+.++|.+.|.  ++|||++.++.  +.++||+.|.|||||+++| |++||+|++|||.++.++++.+++.+++.++..|
T Consensus         3 ~q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v   82 (90)
T d1qava_           3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV   82 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             ceEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            35688998875  47999999863  4579999999999999999 9999999999999999999999999999999999


Q ss_pred             EEEEEeC
Q psy9827         124 HLIVQNR  130 (627)
Q Consensus       124 ~L~v~r~  130 (627)
                      +|+|+|.
T Consensus        83 ~l~v~~~   89 (90)
T d1qava_          83 VLEVKYM   89 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999863

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=113.08  Aligned_cols=80  Identities=38%  Similarity=0.655  Sum_probs=70.9

Q ss_pred             CceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCeeEEE
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS-LQDQIHLI  126 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~-~g~~V~L~  126 (627)
                      ++|.+.+.|.  ++|||++.+.+ .|++|..|.+||||+++||++||+|++|||.++.++++.++..+++. .+..++|+
T Consensus         2 ~pr~v~l~k~~~~~lG~~l~~~~-~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~   80 (85)
T d1w9ea1           2 DPREVILCKDQDGKIGLRLKSID-NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMT   80 (85)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEET-TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred             CCEEEEEEeCCCCCEeEEEEeCC-CCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEE
Confidence            5788888875  57999999874 58999999999999999999999999999999999999999999974 46789998


Q ss_pred             EEeC
Q psy9827         127 VQNR  130 (627)
Q Consensus       127 v~r~  130 (627)
                      |+++
T Consensus        81 v~~r   84 (85)
T d1w9ea1          81 IRDR   84 (85)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            8753

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8e-14  Score=112.84  Aligned_cols=75  Identities=25%  Similarity=0.423  Sum_probs=69.6

Q ss_pred             CCceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      .++|.|++.|.  ++|||++.++     +|+.|.+||||+++||++||+|++|||.++.+++|.+++.++++++..|+|+
T Consensus         3 ~~pr~V~l~k~~~g~~Gf~i~~g-----~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~   77 (82)
T d1r6ja_           3 MDPRTITMHKDSTGHVGFIFKNG-----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT   77 (82)
T ss_dssp             TCCEEEEEECCTTSCCCEEEETT-----EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CCCEEEEEEeCCCCCcCEEEEEE-----EEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEE
Confidence            47899999985  4699999865     6999999999999999999999999999999999999999999999999999


Q ss_pred             EE
Q psy9827         127 VQ  128 (627)
Q Consensus       127 v~  128 (627)
                      |.
T Consensus        78 v~   79 (82)
T d1r6ja_          78 IM   79 (82)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.4e-13  Score=116.82  Aligned_cols=82  Identities=37%  Similarity=0.624  Sum_probs=72.9

Q ss_pred             CCCceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          48 EPDPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        48 ~~~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      ...+|+|.+.|.  ++|||+|.++.  ..|+||+.|.++|||+++||++||+|++|||+++.+++|.+++.+++.++ .+
T Consensus        13 ~~~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~v   91 (104)
T d1wi2a_          13 QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EI   91 (104)
T ss_dssp             SSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHSS-SE
T ss_pred             cCcCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcCC-eE
Confidence            446799999886  48999999874  45899999999999999999999999999999999999999999998765 68


Q ss_pred             EEEEEeC
Q psy9827         124 HLIVQNR  130 (627)
Q Consensus       124 ~L~v~r~  130 (627)
                      +|+|++.
T Consensus        92 ~l~V~~~   98 (104)
T d1wi2a_          92 SMRVRFF   98 (104)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            9998764

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.4e-14  Score=117.79  Aligned_cols=80  Identities=26%  Similarity=0.527  Sum_probs=71.1

Q ss_pred             eEEEeccC-CceeEEEEcc--------CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy9827          52 RFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQD  121 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~--------~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~  121 (627)
                      ..|.|.|. ++|||++.|+        ...|+||+.|.+||||+++| |++||+|++|||.++.++++.+++.+++.++.
T Consensus         4 ~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~   83 (94)
T d1wf8a1           4 FPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKG   83 (94)
T ss_dssp             EEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCS
T ss_pred             EEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45677775 5899999874        23479999999999999999 99999999999999999999999999999999


Q ss_pred             eeEEEEEeCC
Q psy9827         122 QIHLIVQNRR  131 (627)
Q Consensus       122 ~V~L~v~r~~  131 (627)
                      .|+|+|.|+.
T Consensus        84 ~v~L~V~R~k   93 (94)
T d1wf8a1          84 NVRFVIGREK   93 (94)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEeCC
Confidence            9999998854

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=7.9e-14  Score=116.30  Aligned_cols=79  Identities=33%  Similarity=0.566  Sum_probs=70.6

Q ss_pred             ceEEEeccC--CceeEEEEccC--------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          51 PRFITFQKE--GSVGIRLTGGN--------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        51 ~r~v~l~k~--g~lG~~i~g~~--------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      .+.+.|.|.  ++|||+|.++.        ..|+||+.|.|||||+++| |++||+|++|||.++.++++.+++.+++++
T Consensus         4 i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   83 (94)
T d1ihja_           4 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   83 (94)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            356778775  37999999862        2469999999999999999 999999999999999999999999999999


Q ss_pred             CCeeEEEEEe
Q psy9827         120 QDQIHLIVQN  129 (627)
Q Consensus       120 g~~V~L~v~r  129 (627)
                      +..|+|+|+|
T Consensus        84 ~~~v~L~V~R   93 (94)
T d1ihja_          84 DFKIELEIQT   93 (94)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            9999999986

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.7e-14  Score=115.52  Aligned_cols=80  Identities=34%  Similarity=0.579  Sum_probs=72.7

Q ss_pred             CCceEEEeccC-CceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQD  121 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~  121 (627)
                      |+.+.|.+.|. ++|||+|.++.     ..++||..|.++|+|+++| |++||+|++|||.++.+++|.+++.+++++++
T Consensus         1 P~~~~V~l~K~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~   80 (88)
T d2fnea1           1 PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG   80 (88)
T ss_dssp             CEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CeEEEEEEEeCCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            56789999886 48999998753     3479999999999999999 99999999999999999999999999999999


Q ss_pred             eeEEEEE
Q psy9827         122 QIHLIVQ  128 (627)
Q Consensus       122 ~V~L~v~  128 (627)
                      .++|+|.
T Consensus        81 ~v~L~Vl   87 (88)
T d2fnea1          81 TVTLMVL   87 (88)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEEE
Confidence            9999885

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=118.48  Aligned_cols=86  Identities=26%  Similarity=0.447  Sum_probs=76.3

Q ss_pred             CCCceEEEeccC-CceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          48 EPDPRFITFQKE-GSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        48 ~~~~r~v~l~k~-g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      ..+.+.|.|.|. .+|||+|.++.     ..++||..|.++|||+++| |++||+|++|||.++.+++|.+++.+|+.++
T Consensus         6 ~g~~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~   85 (110)
T d1um1a_           6 SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CCCEEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            346788899886 48999999863     3579999999999999999 9999999999999999999999999999999


Q ss_pred             CeeEEEEEeCCcc
Q psy9827         121 DQIHLIVQNRRDE  133 (627)
Q Consensus       121 ~~V~L~v~r~~~~  133 (627)
                      ..|.|+|.|....
T Consensus        86 ~~v~l~v~r~~~~   98 (110)
T d1um1a_          86 KKMRFLVAKSDVE   98 (110)
T ss_dssp             SEEEEEEECCCHH
T ss_pred             CeEEEEEEeCCCC
Confidence            9999999876543

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-13  Score=115.94  Aligned_cols=77  Identities=39%  Similarity=0.647  Sum_probs=69.0

Q ss_pred             EEEeccCCceeEEEEccC----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          53 FITFQKEGSVGIRLTGGN----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        53 ~v~l~k~g~lG~~i~g~~----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      .+.+.+.++|||+|.|+.          +.|+||+.|.|||||+++ |++||+|++|||.++.+++|.+|+.+++.+++.
T Consensus        14 ~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~   92 (103)
T d2h3la1          14 RVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT   92 (103)
T ss_dssp             EEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHHHCCSE
T ss_pred             EEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            455666779999999873          358999999999999875 999999999999999999999999999999999


Q ss_pred             eEEEEEeC
Q psy9827         123 IHLIVQNR  130 (627)
Q Consensus       123 V~L~v~r~  130 (627)
                      ++|+|.|+
T Consensus        93 v~L~V~R~  100 (103)
T d2h3la1          93 VELIIVRE  100 (103)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999974

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=8.1e-15  Score=129.64  Aligned_cols=69  Identities=13%  Similarity=0.070  Sum_probs=59.4

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCC--CCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHH
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRS--RNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELA  389 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~--~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~  389 (627)
                      ..++|||+|+|   ++.+|+..||+++||+  +||||+| ++++|.    .||||+.+++++   ..|+|||+.+.|.++
T Consensus        22 ~~~~vra~~~Y---~~~~d~~~P~~~~~LsF~~gdil~v-~~~~d~----~WW~~r~~~~~~---~~G~iPs~~~lE~~r   90 (136)
T d1vyua1          22 VAFAVRTNVSY---CGVLDEECPVQGSGVNFEAKDFLHI-KEKYSN----DWWIGRLVKEGG---DIAFIPSPQRLESIR   90 (136)
T ss_dssp             CCEEEEESSCE---EGGGCTTCSSTTCBCEECTTCEEEE-EEECSS----SEEEEEESSTTC---CCEEEECHHHHHHHH
T ss_pred             ceEEEEEeecc---CCCCCCCCcccCcccCCCCCCEEEE-EeccCC----CcEEEEeccCCC---ceeccCchHHHhhhh
Confidence            36889999999   8889999999999887  9999999 888886    899999887654   689999998888665


Q ss_pred             HH
Q psy9827         390 TA  391 (627)
Q Consensus       390 ~~  391 (627)
                      ..
T Consensus        91 ~~   92 (136)
T d1vyua1          91 LK   92 (136)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-13  Score=117.49  Aligned_cols=82  Identities=27%  Similarity=0.539  Sum_probs=73.9

Q ss_pred             CceEEEeccC-CceeEEEEccC--------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGN--------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~--------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      .++.+.+.|. ++|||+|.++.        +.++||..|.|+|||+++| |++||+|++|||.++.++++.+++.+++.+
T Consensus         7 ~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~   86 (105)
T d1whaa_           7 GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA   86 (105)
T ss_dssp             EEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred             CCEEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcC
Confidence            4677888886 47999999863        4579999999999999999 999999999999999999999999999999


Q ss_pred             CCeeEEEEEeCC
Q psy9827         120 QDQIHLIVQNRR  131 (627)
Q Consensus       120 g~~V~L~v~r~~  131 (627)
                      +..|+|+|.|..
T Consensus        87 ~~~v~l~v~R~~   98 (105)
T d1whaa_          87 SPTIALLLEREA   98 (105)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCeEEEEEEECC
Confidence            999999999854

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=9.3e-14  Score=115.66  Aligned_cols=81  Identities=22%  Similarity=0.327  Sum_probs=71.9

Q ss_pred             ceEEEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          51 PRFITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        51 ~r~v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      ..++.+...++|||+|.++.+  .+++|..|.|+|||+++||++||+|++|||.++.++++.+++.+++.++..|.|+|.
T Consensus         7 ~~tv~~~g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~   86 (94)
T d1vb7a_           7 GLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLD   86 (94)
T ss_dssp             CEEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEE
T ss_pred             eEEEEEECCCcCCEEEEeeccCCCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            345556555689999998754  468999999999999999999999999999999999999999999999999999999


Q ss_pred             eCC
Q psy9827         129 NRR  131 (627)
Q Consensus       129 r~~  131 (627)
                      |..
T Consensus        87 R~~   89 (94)
T d1vb7a_          87 RSS   89 (94)
T ss_dssp             CCC
T ss_pred             ECC
Confidence            854

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.6e-13  Score=114.44  Aligned_cols=81  Identities=20%  Similarity=0.291  Sum_probs=71.7

Q ss_pred             CceEEEeccC--CceeEEEEccC--------------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHH
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN--------------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV  113 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~--------------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~  113 (627)
                      +.+++.+.|.  ++|||++.++.              ..+++|..|.+||||+++||++||+|++|||.++.+++|.+++
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHHH
Confidence            3567778774  48999999863              2368999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeeEEEEEeC
Q psy9827         114 LFLLSLQDQIHLIVQNR  130 (627)
Q Consensus       114 ~~l~~~g~~V~L~v~r~  130 (627)
                      .+++.++..|+|+|.+.
T Consensus        85 ~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          85 NMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHTTTEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEEec
Confidence            99999999999999863

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.9e-14  Score=120.31  Aligned_cols=85  Identities=34%  Similarity=0.572  Sum_probs=75.9

Q ss_pred             CCCceEEEeccC--CceeEEEEccC-----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHH
Q psy9827          48 EPDPRFITFQKE--GSVGIRLTGGN-----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV  113 (627)
Q Consensus        48 ~~~~r~v~l~k~--g~lG~~i~g~~-----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~  113 (627)
                      .|..+.|.+.|.  ++|||+|.++.           ..++||+.|.|+|||+++| |++||+|++|||+++.+++|.+++
T Consensus         7 g~~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~   86 (111)
T d1ujua_           7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV   86 (111)
T ss_dssp             SCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred             CCCeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHH
Confidence            467788998886  38999999763           3579999999999999999 999999999999999999999999


Q ss_pred             HHHhcCCCeeEEEEEeCCc
Q psy9827         114 LFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus       114 ~~l~~~g~~V~L~v~r~~~  132 (627)
                      .+|+.+++.|+|+|.|..+
T Consensus        87 ~~lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          87 QLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HHHSSCSSEEEECCCCCCC
T ss_pred             HHHHcCCCeEEEEEEECCC
Confidence            9999999999999987543

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3.3e-13  Score=112.71  Aligned_cols=82  Identities=28%  Similarity=0.518  Sum_probs=71.4

Q ss_pred             CCCceEEEeccCCceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC---
Q psy9827          48 EPDPRFITFQKEGSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL---  119 (627)
Q Consensus        48 ~~~~r~v~l~k~g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~---  119 (627)
                      .+..+++.+.+.++|||+|.++.    ..++||+.|.|||+|+++| |++||+|++|||.++.++++.+++.+++.+   
T Consensus         6 ~~~~~~v~~~~~~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1           6 DPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             CTTEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             CCcEEEEEecCCCccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            35678888888889999999874    3579999999999999999 999999999999999999999999999854   


Q ss_pred             -CCeeEEEEEe
Q psy9827         120 -QDQIHLIVQN  129 (627)
Q Consensus       120 -g~~V~L~v~r  129 (627)
                       +..+.|.+.|
T Consensus        86 ~~~~vel~~~R   96 (96)
T d1wi4a1          86 SESPWEIAFIR   96 (96)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence             4667777654

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.9e-13  Score=111.50  Aligned_cols=82  Identities=24%  Similarity=0.468  Sum_probs=72.9

Q ss_pred             ceEEEeccC-CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          51 PRFITFQKE-GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        51 ~r~v~l~k~-g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      ..+|.+.|. ++|||+|.++.+  .++||..|.+||||+++| |++||+|++|||.++.++++.+++.+++.+++.+.|+
T Consensus         4 i~tV~l~k~~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~   83 (95)
T d1n7ea_           4 IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK   83 (95)
T ss_dssp             EEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             EEEEEEEECCCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            345677775 589999998743  579999999999999999 9999999999999999999999999999999999999


Q ss_pred             EEeCCc
Q psy9827         127 VQNRRD  132 (627)
Q Consensus       127 v~r~~~  132 (627)
                      |.|..+
T Consensus        84 v~r~~~   89 (95)
T d1n7ea_          84 IKKQTD   89 (95)
T ss_dssp             EECCCC
T ss_pred             EEECCC
Confidence            998543

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=4.5e-13  Score=112.69  Aligned_cols=82  Identities=22%  Similarity=0.422  Sum_probs=72.7

Q ss_pred             CceEEEeccC--CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ....+.+.|.  ++|||++.++.    ..++||+.|.|||+|+++| |++||+|++|||.++.++++.++..+++.+++.
T Consensus        10 ~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~   89 (99)
T d1p1da2          10 GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL   89 (99)
T ss_dssp             SCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC
T ss_pred             CcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCe
Confidence            4567778764  37999998763    3479999999999999999 999999999999999999999999999999999


Q ss_pred             eEEEEEeCC
Q psy9827         123 IHLIVQNRR  131 (627)
Q Consensus       123 V~L~v~r~~  131 (627)
                      |+|+|.|..
T Consensus        90 v~L~V~r~~   98 (99)
T d1p1da2          90 VKLKIRKDE   98 (99)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            999999754

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=5.1e-13  Score=112.02  Aligned_cols=79  Identities=23%  Similarity=0.473  Sum_probs=70.1

Q ss_pred             ceEEEeccC---CceeEEEEccC-----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHH
Q psy9827          51 PRFITFQKE---GSVGIRLTGGN-----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLF  115 (627)
Q Consensus        51 ~r~v~l~k~---g~lG~~i~g~~-----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~  115 (627)
                      .|.|.|.+.   .+|||++.++.           ..|+||+.|.|||||+++| |++||+|++|||.++.++++.+++.+
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            467777664   37999999763           2479999999999999999 99999999999999999999999999


Q ss_pred             HhcCCCeeEEEEEe
Q psy9827         116 LLSLQDQIHLIVQN  129 (627)
Q Consensus       116 l~~~g~~V~L~v~r  129 (627)
                      ++.++..++|+|..
T Consensus        83 l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          83 MVANSSNLIITVKP   96 (98)
T ss_dssp             HHHTCTEEEEEEEC
T ss_pred             HHcCCCeEEEEEEe
Confidence            99999999999874

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.39  E-value=6.3e-13  Score=110.08  Aligned_cols=78  Identities=28%  Similarity=0.557  Sum_probs=67.7

Q ss_pred             eEEEeccC--CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc---CCC
Q psy9827          52 RFITFQKE--GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS---LQD  121 (627)
Q Consensus        52 r~v~l~k~--g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~---~g~  121 (627)
                      .+|.+.+.  ++|||++.|+.    +.|+||+.|.|||||+++| |++||+|++|||.++.+++|.+|+.+++.   ...
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~   82 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPG   82 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSS
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCC
Confidence            35667774  58999999873    3589999999999999999 99999999999999999999999999874   345


Q ss_pred             eeEEEEEe
Q psy9827         122 QIHLIVQN  129 (627)
Q Consensus       122 ~V~L~v~r  129 (627)
                      .|+|+|.|
T Consensus        83 ~v~L~V~R   90 (92)
T d2f0aa1          83 PIVLTVAK   90 (92)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEEe
Confidence            79999886

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-12  Score=115.05  Aligned_cols=84  Identities=35%  Similarity=0.542  Sum_probs=72.9

Q ss_pred             CCCCceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          47 VEPDPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        47 ~~~~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ...+.+.|.+.+.  ++|||+|.|+.+  .|+||..|.+|++|+++||++||+|++|||+++.++++.+++.+++.. ..
T Consensus        17 ~~~~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~-~~   95 (128)
T d1uf1a_          17 QGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS-RH   95 (128)
T ss_dssp             CCSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SE
T ss_pred             CCCCeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-Cc
Confidence            3456688888775  379999998753  589999999999999999999999999999999999999999999875 47


Q ss_pred             eEEEEEeCC
Q psy9827         123 IHLIVQNRR  131 (627)
Q Consensus       123 V~L~v~r~~  131 (627)
                      +.|+|.+..
T Consensus        96 v~l~v~~~~  104 (128)
T d1uf1a_          96 LILTVKDVG  104 (128)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEEECC
Confidence            889888654

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.9e-13  Score=118.28  Aligned_cols=81  Identities=25%  Similarity=0.483  Sum_probs=71.1

Q ss_pred             ceEEEeccC-CceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC-Ce
Q psy9827          51 PRFITFQKE-GSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ-DQ  122 (627)
Q Consensus        51 ~r~v~l~k~-g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g-~~  122 (627)
                      .+.|.+.|. ++|||+|.|+.     +.++||..|.+||+|+++| |++||+|++|||.++.+++|.+++.+|+..+ ..
T Consensus        30 ~~~V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~  109 (130)
T d1i16a_          30 VCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGP  109 (130)
T ss_dssp             EEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSE
T ss_pred             EEEEEEEeCCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCe
Confidence            456777776 47999999873     3579999999999999999 9999999999999999999999999999764 48


Q ss_pred             eEEEEEeCC
Q psy9827         123 IHLIVQNRR  131 (627)
Q Consensus       123 V~L~v~r~~  131 (627)
                      |+|+|.|..
T Consensus       110 v~l~v~r~~  118 (130)
T d1i16a_         110 VTIVIRRKS  118 (130)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEcCC
Confidence            999998754

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=9.2e-13  Score=111.40  Aligned_cols=83  Identities=19%  Similarity=0.366  Sum_probs=74.1

Q ss_pred             ceEEEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          51 PRFITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        51 ~r~v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      ...+.+....+|||+|.++.+  .+++|..|.++++|++++|++||+|++|||+++.+++|.+++.+++.+++.|.|+|.
T Consensus         6 ~~~v~~~g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~   85 (103)
T d1wf7a_           6 SGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQ   85 (103)
T ss_dssp             CEEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEEC
T ss_pred             eeEEEEECCCCccEEEEcccCCCCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            355677777799999999864  469999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcc
Q psy9827         129 NRRDE  133 (627)
Q Consensus       129 r~~~~  133 (627)
                      |....
T Consensus        86 R~~~~   90 (103)
T d1wf7a_          86 RASAA   90 (103)
T ss_dssp             CCSCC
T ss_pred             ECCCC
Confidence            86543

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3e-12  Score=111.75  Aligned_cols=79  Identities=25%  Similarity=0.442  Sum_probs=69.3

Q ss_pred             EEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEEE
Q psy9827          53 FITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHLI  126 (627)
Q Consensus        53 ~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L~  126 (627)
                      .+.+.+. .+|||++.++.  ..++||..|.+|++|+++| |++||+|++|||.++.++++.+++.+|+.+  +..|.|+
T Consensus        22 ~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~  101 (123)
T d1ueqa_          22 STTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV  101 (123)
T ss_dssp             EEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE
T ss_pred             EEEEEECCCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence            4556665 48999999964  4579999999999999999 999999999999999999999999999865  6889999


Q ss_pred             EEeCC
Q psy9827         127 VQNRR  131 (627)
Q Consensus       127 v~r~~  131 (627)
                      |.|..
T Consensus       102 v~R~~  106 (123)
T d1ueqa_         102 LCRGY  106 (123)
T ss_dssp             EEESC
T ss_pred             EEcCC
Confidence            98854

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.1e-13  Score=115.99  Aligned_cols=79  Identities=32%  Similarity=0.493  Sum_probs=69.4

Q ss_pred             CceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeeEEEE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL-QDQIHLIV  127 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-g~~V~L~v  127 (627)
                      .+|.|.|.|. ++|||+|.++  .+++|..|.++|||+++||++||+|++|||.++.+++|.+++.+++.+ +..|+|+|
T Consensus        15 ~pr~v~l~k~~~g~Gf~i~g~--~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v   92 (111)
T d1vaea_          15 PPRGIHFTVEEGDLGFTLRGN--TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV   92 (111)
T ss_dssp             CCCCCCEECCSSCCSCCEESS--SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEE
T ss_pred             CCEEEEEEECCCccCEEEECC--ccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEE
Confidence            4577788775 5899999875  479999999999999999999999999999999999999999999866 56888888


Q ss_pred             EeC
Q psy9827         128 QNR  130 (627)
Q Consensus       128 ~r~  130 (627)
                      .+.
T Consensus        93 ~~~   95 (111)
T d1vaea_          93 VSL   95 (111)
T ss_dssp             ECE
T ss_pred             ECC
Confidence            753

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.7e-12  Score=104.10  Aligned_cols=71  Identities=18%  Similarity=0.367  Sum_probs=63.9

Q ss_pred             EEEeccC---CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827          53 FITFQKE---GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ  128 (627)
Q Consensus        53 ~v~l~k~---g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~  128 (627)
                      ++.+.+.   .+|||++.++     +|..|.|||+|+++||++||+|++|||.++.++++.++..++++++..++|++.
T Consensus         3 tv~l~r~~~~~~lGf~i~~g-----~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~vi   76 (79)
T d1y7na1           3 TVLIRRPDLRYQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTM   76 (79)
T ss_dssp             EEEEEESSTTSCCCEEEETT-----EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             EEEEEcCCCCCCcCEEEECC-----EEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEE
Confidence            4556553   3899999865     699999999999999999999999999999999999999999999999999886

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-12  Score=110.00  Aligned_cols=80  Identities=28%  Similarity=0.471  Sum_probs=69.1

Q ss_pred             CCceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH  124 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~  124 (627)
                      ...+.+.+.+.  .+|||+|.++.+  .|+||..|.+||||+++||++||+|++|||.++.++++.+++.+++.++ .++
T Consensus         7 ~~~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~-~~~   85 (101)
T d1x5na1           7 NKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR-SLT   85 (101)
T ss_dssp             CSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCS-SEE
T ss_pred             CccEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCC-CEE
Confidence            45678887764  389999998753  5899999999999999999999999999999999999999999999876 466


Q ss_pred             EEEEe
Q psy9827         125 LIVQN  129 (627)
Q Consensus       125 L~v~r  129 (627)
                      +++.+
T Consensus        86 l~v~~   90 (101)
T d1x5na1          86 ISIVA   90 (101)
T ss_dssp             EEECS
T ss_pred             EEEEE
Confidence            66664

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.5e-13  Score=123.80  Aligned_cols=68  Identities=16%  Similarity=0.109  Sum_probs=59.3

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCC--CCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHH
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRS--RNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELA  389 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~--~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~  389 (627)
                      ..+||||+|+|   ++.+|+.+||+++||+  +||||+| ++++|.    .||++++.+.+|   +.|+|||+.++|...
T Consensus        22 ~~f~vra~~dy---~~~~d~~~p~~~~~LsF~kGDii~V-~~~~d~----~WW~gr~~~~~g---~~G~iPS~~~~e~~~   90 (145)
T d1vyva1          22 VAFAVKTNVSY---CGALDEDVPVPSSAVSFDAKDFLHI-KEKYNN----DWWIGRLVKEGC---EIGFIPSPLRLENIR   90 (145)
T ss_dssp             CCEEEEESSCB---CTTSCCSCSSTTCBCCBCTTCEEEE-EEEEET----TEEEEEESSTTC---CCEEEECHHHHHHHH
T ss_pred             ccEEEEEeeee---CCccCCcCCcccccccCcCCCEEEE-eeccCC----CcEEEEEcCCCC---ceeEeCCchhhhccc
Confidence            46799999999   8889999999998887  9999999 888776    899999877654   789999998888765


Q ss_pred             H
Q psy9827         390 T  390 (627)
Q Consensus       390 ~  390 (627)
                      .
T Consensus        91 ~   91 (145)
T d1vyva1          91 I   91 (145)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-12  Score=111.52  Aligned_cols=82  Identities=28%  Similarity=0.468  Sum_probs=70.4

Q ss_pred             CCceEEEeccC--CceeEEEEccC---CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN---KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~---~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      .+.+.+.+.|.  ++|||+|.++.   ..++||..|.+||||+++| |++||+|++|||.++.++++.+++.+|+.++..
T Consensus         7 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   86 (107)
T d1x6da1           7 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP   86 (107)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred             CCcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCC
Confidence            35677778765  48999999873   3589999999999999999 999999999999999999999999999988777


Q ss_pred             eEEEEEeC
Q psy9827         123 IHLIVQNR  130 (627)
Q Consensus       123 V~L~v~r~  130 (627)
                      +.+++.++
T Consensus        87 ~~l~v~~r   94 (107)
T d1x6da1          87 RQAVIVTR   94 (107)
T ss_dssp             SEEEEEEE
T ss_pred             EEEEEEEC
Confidence            76666543

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.6e-12  Score=110.55  Aligned_cols=78  Identities=23%  Similarity=0.384  Sum_probs=66.0

Q ss_pred             eEEEeccC--CceeEEEEccC-CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827          52 RFITFQKE--GSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV  127 (627)
Q Consensus        52 r~v~l~k~--g~lG~~i~g~~-~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v  127 (627)
                      ..|.+.|.  ++|||++.++. ..++||+.|.+||||+++| |++||+|++|||.++.++++.++..+|+.+...+.+.+
T Consensus         3 ~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l   82 (112)
T d1qaua_           3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL   82 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred             EEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEE
Confidence            45666654  58999999864 5689999999999999999 99999999999999999999999999997766555554


Q ss_pred             Ee
Q psy9827         128 QN  129 (627)
Q Consensus       128 ~r  129 (627)
                      .+
T Consensus        83 ~~   84 (112)
T d1qaua_          83 IL   84 (112)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.3e-12  Score=109.96  Aligned_cols=82  Identities=35%  Similarity=0.620  Sum_probs=70.9

Q ss_pred             CCceEEEeccC---CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827          49 PDPRFITFQKE---GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI  123 (627)
Q Consensus        49 ~~~r~v~l~k~---g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V  123 (627)
                      .+.+.|.+.+.   .+|||+|.++.+  .++||..|.+|+||+++||++||+|++|||.++.++++.+++.+++..+ .+
T Consensus         7 ~~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~-~~   85 (101)
T d1ueza_           7 GEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK-KL   85 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSS-SC
T ss_pred             CCEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCC-CE
Confidence            47788888775   279999998743  5799999999999999999999999999999999999999999999876 46


Q ss_pred             EEEEEeCC
Q psy9827         124 HLIVQNRR  131 (627)
Q Consensus       124 ~L~v~r~~  131 (627)
                      .|+|.++.
T Consensus        86 ~l~V~~~~   93 (101)
T d1ueza_          86 VLSVYSAG   93 (101)
T ss_dssp             CEEECCCC
T ss_pred             EEEEEECC
Confidence            67777644

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2.6e-12  Score=107.92  Aligned_cols=79  Identities=16%  Similarity=0.409  Sum_probs=71.5

Q ss_pred             CCceEEEeccC--CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      ...+.+.+.|.  ++|||++.+. ..+++|+.|.+||+|+++| |++||+|++|||.++.++++.+++.+++.++..|+|
T Consensus        17 ~~i~~V~l~k~~~~~lG~~v~~~-~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L   95 (100)
T d1va8a1          17 ETVKIVRIEKARDIPLGATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTF   95 (100)
T ss_dssp             EECEEEEEEECTTCCCCEEEEEC-SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEE
T ss_pred             ceEEEEEEEeCCCCCccEEEEec-CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEE
Confidence            45678888875  4799999887 4589999999999999999 999999999999999999999999999988889999


Q ss_pred             EEE
Q psy9827         126 IVQ  128 (627)
Q Consensus       126 ~v~  128 (627)
                      +|.
T Consensus        96 ~v~   98 (100)
T d1va8a1          96 VLI   98 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.1e-12  Score=110.02  Aligned_cols=84  Identities=27%  Similarity=0.449  Sum_probs=75.1

Q ss_pred             CCceEEEeccC--CceeEEEEccC---CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827          49 PDPRFITFQKE--GSVGIRLTGGN---KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ  122 (627)
Q Consensus        49 ~~~r~v~l~k~--g~lG~~i~g~~---~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~  122 (627)
                      ..++.|.+.|.  ++|||+|.++.   ..++||..|.|+|+|+++| |++||+|++|||.++.++++.+++.+++.++..
T Consensus        14 ~~p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~   93 (117)
T d1v62a_          14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEK   93 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSE
T ss_pred             CCCEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCc
Confidence            46788888875  37999999753   4679999999999999998 999999999999999999999999999999999


Q ss_pred             eEEEEEeCCc
Q psy9827         123 IHLIVQNRRD  132 (627)
Q Consensus       123 V~L~v~r~~~  132 (627)
                      |+|+|.+.+.
T Consensus        94 v~l~v~~~~~  103 (117)
T d1v62a_          94 VRLEILPVPQ  103 (117)
T ss_dssp             EEEEECCBTT
T ss_pred             EEEEEEECCC
Confidence            9999987554

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.33  E-value=3.2e-13  Score=111.23  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=59.3

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCC--CCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHH
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRS--RNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEEL  388 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~--~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~  388 (627)
                      +..+||||+|+|   ++.+|+.+||+++||+  +||||+| ++++|.    .||+++.++.++   +.|+|||+.+.|.+
T Consensus        19 p~~~~vrAlydY---~~~~dd~~P~~~~~LsF~~GDii~v-~~~~d~----~WW~gr~~~~~g---~~G~~PS~~~~e~~   87 (96)
T d1t0ha_          19 PVAFAVRTNVRY---SAAQEDDVPVPGMAISFEAKDFLHV-KEKFNN----DWWIGRLVKEGC---EIGFIPSPVKLENM   87 (96)
T ss_dssp             CCCEEEEESSCB---CCCGGGCCSSTTCBCCBCTTCEEEE-EEECSS----SEEEEEESSTTC---CCEEEECHHHHHHH
T ss_pred             CccEEEEEeecc---CCCCCCCCccccccccCCCCCEEEE-eeeeCC----CceEEEEcCCCC---CEEEecCcHHHHHH
Confidence            346899999999   8889999999999988  9999999 888876    899999887544   78999999888765


Q ss_pred             HH
Q psy9827         389 AT  390 (627)
Q Consensus       389 ~~  390 (627)
                      ..
T Consensus        88 ~~   89 (96)
T d1t0ha_          88 RL   89 (96)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.2e-12  Score=111.06  Aligned_cols=81  Identities=30%  Similarity=0.464  Sum_probs=71.0

Q ss_pred             CceEEEeccC--CceeEEEEccC--------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN--------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL  119 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~--------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  119 (627)
                      +.+++.+.|.  ++|||++.++.        ..++||+.|.+||||+ ++|++||+|++|||.++.++++.+++.+++.+
T Consensus         7 e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~   85 (104)
T d2csja1           7 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   85 (104)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3467788875  37999999863        2579999999999997 67999999999999999999999999999999


Q ss_pred             CCeeEEEEEeCC
Q psy9827         120 QDQIHLIVQNRR  131 (627)
Q Consensus       120 g~~V~L~v~r~~  131 (627)
                      +..+.|+|.|..
T Consensus        86 ~~~v~l~V~R~~   97 (104)
T d2csja1          86 GKIAAIVVKRPR   97 (104)
T ss_dssp             CSEEEEEEEEEE
T ss_pred             CCEEEEEEEeCC
Confidence            999999998753

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.3e-12  Score=111.59  Aligned_cols=83  Identities=33%  Similarity=0.414  Sum_probs=71.6

Q ss_pred             CceEEEeccCCceeEEEEccCC---CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc----CCC
Q psy9827          50 DPRFITFQKEGSVGIRLTGGNK---VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS----LQD  121 (627)
Q Consensus        50 ~~r~v~l~k~g~lG~~i~g~~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~----~g~  121 (627)
                      +.+.+.+.+.++|||+|.|+.+   .++||..|.|||+|+++| |++||+|++|||.++.++++.+++.+++.    .+.
T Consensus        18 ~v~~~~~~~~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~   97 (118)
T d1v6ba_          18 DVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGD   97 (118)
T ss_dssp             CEEEEEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCS
T ss_pred             eEEEEEecCCCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCC
Confidence            4455566667899999998853   369999999999999999 99999999999999999999999999974    477


Q ss_pred             eeEEEEEeCCc
Q psy9827         122 QIHLIVQNRRD  132 (627)
Q Consensus       122 ~V~L~v~r~~~  132 (627)
                      .|+|+|.|.++
T Consensus        98 ~V~L~v~r~pp  108 (118)
T d1v6ba_          98 WIDLVVAVCPP  108 (118)
T ss_dssp             EEEEEEECCCS
T ss_pred             EEEEEEEeCCC
Confidence            89999998653

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.9e-12  Score=106.09  Aligned_cols=80  Identities=25%  Similarity=0.363  Sum_probs=68.6

Q ss_pred             EEEEEeecCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         200 LRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      +.|+|.|+..+.||.+.++         .++||++|.+|   ++|++++.|++||+|++|||+++.+++++|++++|+++
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~   79 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEG---GAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   79 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECCC---CChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC
Confidence            5788998766666666543         47999999988   45666778999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy9827         271 KEKLSLTIRREV  282 (627)
Q Consensus       271 ~~~v~l~V~r~~  282 (627)
                      ++.++|+|.|++
T Consensus        80 ~~~v~L~v~Rpg   91 (92)
T d2fe5a1          80 SDMVYLKVAKPG   91 (92)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCEEEEEEECCC
Confidence            999999999864

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.8e-12  Score=109.60  Aligned_cols=79  Identities=24%  Similarity=0.446  Sum_probs=68.1

Q ss_pred             eEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEE
Q psy9827          52 RFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHL  125 (627)
Q Consensus        52 r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L  125 (627)
                      ..|.+.|. .+|||+|.++.  ..++||+.|.++|||+++| |++||+|++|||.++.++++.+++.+|+.+  +..|+|
T Consensus        11 ~~V~l~k~~~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l   90 (103)
T d1uepa_          11 LDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNL   90 (103)
T ss_dssp             ECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEE
T ss_pred             EEEEEEeCCceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEE
Confidence            34566665 47999999875  3569999999999999999 999999999999999999999999999865  457889


Q ss_pred             EEEeC
Q psy9827         126 IVQNR  130 (627)
Q Consensus       126 ~v~r~  130 (627)
                      +|.|.
T Consensus        91 ~v~r~   95 (103)
T d1uepa_          91 TVRRK   95 (103)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            88874

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.8e-12  Score=108.51  Aligned_cols=71  Identities=25%  Similarity=0.492  Sum_probs=65.2

Q ss_pred             ceeEEEEccC-------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827          61 SVGIRLTGGN-------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus        61 ~lG~~i~g~~-------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      +|||+|.++.       ..|+||..|.+||+|+++| |++||+|++|||.++.++++.+++.+++.++..|+|+|.|..
T Consensus        31 glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~~  109 (117)
T d1ujda_          31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDL  109 (117)
T ss_dssp             SCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSC
T ss_pred             ccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEECC
Confidence            7999999863       2379999999999999999 999999999999999999999999999999999999998743

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.8e-12  Score=109.18  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=72.5

Q ss_pred             CceEEEeccC--CceeEEEEccC---------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN---------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL  117 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~---------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~  117 (627)
                      +...|.|.|.  ++|||+|.++.         ..++||..|.|||||+++| |++||+|++|||+++.++++.+++.+++
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~   89 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             eeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHH
Confidence            4567777774  48999999863         2468999999999999998 9999999999999999999999999999


Q ss_pred             cCCCeeEEEEEeCC
Q psy9827         118 SLQDQIHLIVQNRR  131 (627)
Q Consensus       118 ~~g~~V~L~v~r~~  131 (627)
                      .++..|+|+|.|..
T Consensus        90 ~~~~~v~l~V~r~~  103 (114)
T d1uewa_          90 DAGLSVTLRIIPQE  103 (114)
T ss_dssp             HTTTEEEEEECCCS
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999998754

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=5.8e-12  Score=105.75  Aligned_cols=82  Identities=20%  Similarity=0.355  Sum_probs=69.6

Q ss_pred             ccEEEEEeecCCCCCeeeeeC------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHH
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARK  265 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~  265 (627)
                      ..+.|+|.|...++||++...            .++||.+|.++   ++|++++.|++||+|++|||+++.++++++++.
T Consensus         4 ~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~   80 (99)
T d1ozia_           4 DTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPK---GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE   80 (99)
T ss_dssp             CEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSS---SHHHHHTCCCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             CEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCC---ChHHhcCCCCccCEEEEECCEEcCCCCHHHHHH
Confidence            457899998766666666532            36999999988   456667779999999999999999999999999


Q ss_pred             HHHcCCCeEEEEEEeCC
Q psy9827         266 LIDSSKEKLSLTIRREV  282 (627)
Q Consensus       266 ~l~~~~~~v~l~V~r~~  282 (627)
                      +|++++..++|+|.|+.
T Consensus        81 ~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          81 TLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHHSCSEEEEEEECCC
T ss_pred             HHHCCCCeEEEEEEeCC
Confidence            99999999999999964

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.1e-12  Score=110.88  Aligned_cols=79  Identities=25%  Similarity=0.428  Sum_probs=70.3

Q ss_pred             EEeccCCceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827          54 ITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus        54 v~l~k~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      +.+...++|||+|.++.+  .+++|+.|.++++|++++|++||+|++|||.++.+++|.+++.+++.+++.|.|+|.|..
T Consensus         9 v~~~g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~   88 (103)
T d1v5la_           9 VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             CEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             EEEECCCCCCEEEEeecCCCCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            444555689999999753  469999999999999999999999999999999999999999999999999999999855


Q ss_pred             c
Q psy9827         132 D  132 (627)
Q Consensus       132 ~  132 (627)
                      .
T Consensus        89 ~   89 (103)
T d1v5la_          89 T   89 (103)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.7e-12  Score=109.66  Aligned_cols=82  Identities=21%  Similarity=0.442  Sum_probs=72.4

Q ss_pred             CceEEEeccC-CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      +...|.+.|. .+|||+|.++.+  .+++|+.|.++++|+++| |++||+|++|||.++.++++.+++.+++.++..|.|
T Consensus        11 e~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~l   90 (103)
T d1wfva_          11 DYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRL   90 (103)
T ss_dssp             CCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECE
T ss_pred             eEEEEEEEeCCCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEEEE
Confidence            4556667775 379999998643  479999999999999999 999999999999999999999999999988999999


Q ss_pred             EEEeCC
Q psy9827         126 IVQNRR  131 (627)
Q Consensus       126 ~v~r~~  131 (627)
                      +|.|..
T Consensus        91 ~v~R~~   96 (103)
T d1wfva_          91 LLKRGT   96 (103)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            999754

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.4e-12  Score=106.59  Aligned_cols=85  Identities=19%  Similarity=0.306  Sum_probs=71.1

Q ss_pred             CccEEEEEeecCCCCCeeeeeC------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      ...++|+|.|...+++|.+.++            .++||.+|.++   ++|++++.|++||+|++|||+++.+++++|++
T Consensus         7 g~~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~g---s~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav   83 (107)
T d1uhpa_           7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDS---GPAAKEGGLQIHDRIIEVNGRDLSRATHDQAV   83 (107)
T ss_dssp             SEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSS---SHHHHTTCCCSSCEEEEETTEECTTCCHHHHH
T ss_pred             CCEEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECCC---CHHHHhCCCcceeEEeEECCEECCCCCHHHHH
Confidence            3467888988766666666543            37999999988   45666778999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEeCCCC
Q psy9827         265 KLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ++|++++..++|+|.|....
T Consensus        84 ~~lk~~~~~v~l~v~r~~~~  103 (107)
T d1uhpa_          84 EAFKTAKEPIVVQVLRRTSG  103 (107)
T ss_dssp             HHHHHCCSSEEEEEEECCSS
T ss_pred             HHHHhCCCcEEEEEEECCCC
Confidence            99999999999999986543

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-11  Score=100.92  Aligned_cols=72  Identities=19%  Similarity=0.415  Sum_probs=60.6

Q ss_pred             EEeccC--CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827          54 ITFQKE--GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL  125 (627)
Q Consensus        54 v~l~k~--g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L  125 (627)
                      |.+.|.  .+|||++.++.    ..++||+.|.|||||+++| |++||+|++|||.++.++++.++..+++.++..+.+
T Consensus         2 V~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v   80 (85)
T d1x45a1           2 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRV   80 (85)
T ss_dssp             EEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEE
T ss_pred             eEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEE
Confidence            455554  48999997542    2479999999999999999 999999999999999999999999999977554433

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.7e-12  Score=107.93  Aligned_cols=70  Identities=34%  Similarity=0.642  Sum_probs=62.6

Q ss_pred             CceeEEEEccC-----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEEEEEe
Q psy9827          60 GSVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHLIVQN  129 (627)
Q Consensus        60 g~lG~~i~g~~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L~v~r  129 (627)
                      ++|||+|.|+.     +.|+||..|.+||+|+++| |++||+|++|||.++.++++.+++.+++.+  +..++|+|.|
T Consensus        30 ~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          30 ALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             SCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             CCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            48999999873     2489999999999999999 999999999999999999999999999854  5678888876

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.3e-12  Score=107.31  Aligned_cols=80  Identities=30%  Similarity=0.598  Sum_probs=67.3

Q ss_pred             CceEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhc--CCCCCCEEEEECCEeCCCCCHHHHHHHHhcC----
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQ--GLQPGDKILKVNDMDMKGITREEAVLFLLSL----  119 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~a--GL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~----  119 (627)
                      +..++.+.+.  ++|||++.++.  ..++||+.|.+||||+++  +|++||+|++|||.++.++++.+++.+++.+    
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~   87 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH   87 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCC
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            4567777774  57999999874  357999999999999986  6999999999999999999999999999754    


Q ss_pred             CCeeEEEEEe
Q psy9827         120 QDQIHLIVQN  129 (627)
Q Consensus       120 g~~V~L~v~r  129 (627)
                      ...|.|++++
T Consensus        88 ~~~v~L~vrp   97 (106)
T d2cs5a1          88 SGELMLLVRP   97 (106)
T ss_dssp             SSCEEEEEEC
T ss_pred             CcEEEEEECC
Confidence            3467777765

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=7.6e-12  Score=108.92  Aligned_cols=82  Identities=22%  Similarity=0.319  Sum_probs=69.4

Q ss_pred             CceEEEeccC--CceeEEEEccC------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ  120 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g  120 (627)
                      +.+.+.|.+.  ++|||+|.++.      ..++||+.|.|+|||+++| |++||+|++|||+++.++++.+++.+|+.++
T Consensus        15 ~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~   94 (122)
T d1v5qa_          15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   94 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred             eeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            5567778775  37999999873      3569999999999999999 9999999999999999999999999999777


Q ss_pred             CeeEEEEEeCC
Q psy9827         121 DQIHLIVQNRR  131 (627)
Q Consensus       121 ~~V~L~v~r~~  131 (627)
                      ..+.|++.+..
T Consensus        95 ~~~~l~l~~~~  105 (122)
T d1v5qa_          95 ITSKVTLEIEF  105 (122)
T ss_dssp             TTTCEEEEEEE
T ss_pred             CceEEEEEEec
Confidence            66666665433

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=104.88  Aligned_cols=87  Identities=23%  Similarity=0.290  Sum_probs=71.3

Q ss_pred             CccEEEEEeecCCCCCeeeeeC----------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG----------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~----------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      .....|.|.|...+++|.+..+          .++||.+|.++   ++|++.+.|++||+|++|||+++.+++++|++.+
T Consensus         6 ~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~g---s~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~   82 (105)
T d1whaa_           6 SGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEG---GAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSL   82 (105)
T ss_dssp             CEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTT---SSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCCEEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCC---CchhhcCCccCCCEEEEECCEEcCCCcHHHHHHH
Confidence            3456788888766666666543          37999999988   4566667799999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCCCCCC
Q psy9827         267 IDSSKEKLSLTIRREVPRPT  286 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~~~~~  286 (627)
                      |+++.+.++|+|.|.....+
T Consensus        83 l~~~~~~v~l~v~R~~~~~P  102 (105)
T d1whaa_          83 LTAASPTIALLLEREAGSGP  102 (105)
T ss_dssp             HTSCCSCEEEEEEECCCCCC
T ss_pred             HHcCCCeEEEEEEECCCCcC
Confidence            99999999999999765443

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.4e-12  Score=102.30  Aligned_cols=79  Identities=27%  Similarity=0.356  Sum_probs=64.9

Q ss_pred             cEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         199 TLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      +++|++.+ ..++||.+..+    .+++|..|.+|    ++|..++|++||+|++|||+++.++++++++++|+++++.+
T Consensus         2 p~~V~l~~-~~~~Gf~i~gg~~~~~~v~V~~v~~g----s~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v   76 (85)
T d1rgwa_           2 AYSVTLTG-PGPWGFRLQGGKDFNMPLTISRITPG----SKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNL   76 (85)
T ss_dssp             EEEEEECC-SSCCCEEECCCGGGTSCCBEEEECTT----SHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCE
T ss_pred             CEEEEecC-CCCCCEEEEeecCCCCCEEEEEecCC----ChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            46777765 34455555543    37999999987    35556899999999999999999999999999999999999


Q ss_pred             EEEEEeCC
Q psy9827         275 SLTIRREV  282 (627)
Q Consensus       275 ~l~V~r~~  282 (627)
                      +|+|.|.+
T Consensus        77 ~L~V~R~~   84 (85)
T d1rgwa_          77 SLTLQKSK   84 (85)
T ss_dssp             EEEEESCC
T ss_pred             EEEEEECC
Confidence            99999865

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.3e-12  Score=102.94  Aligned_cols=82  Identities=26%  Similarity=0.413  Sum_probs=68.6

Q ss_pred             CccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      |..++|++.+. .+.||++..+       .|+||++|.+|   ++|++++.|++||+|++|||+++.+++++|++.+|++
T Consensus         3 pei~~v~l~~~-~glG~~i~g~~~~~~~~~gi~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~   78 (92)
T d1t2ma1           3 PEIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKG---GAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR   78 (92)
T ss_dssp             CEEEEEEEECS-SSCCEEEEEECCSSCCSCEEEEEEECTT---SHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             CeEEEEEEeCC-CccCEEEEeecCCCCCCCCEEEEEEcCC---ChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHc
Confidence            45677777764 3566666553       27999999988   4566677899999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCC
Q psy9827         270 SKEKLSLTIRREV  282 (627)
Q Consensus       270 ~~~~v~l~V~r~~  282 (627)
                      +++.++|+|.|.+
T Consensus        79 ~~~~v~L~v~R~g   91 (92)
T d1t2ma1          79 TSSVVTLEVAKQG   91 (92)
T ss_dssp             CCSEEEEEEEECC
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999999864

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=7.4e-12  Score=103.83  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             EEEEEeecCCCCCeeeeeC---------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         200 LRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~---------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ..|+|.|...+.||.+.++         .++||++|.+|   ++|++.+.|++||+|++|||+++.++++++++++|+++
T Consensus         3 ~~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_           3 EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPG---GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             EEEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECTT---SHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECCC---ChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3677888765555555432         37999999988   45566677999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCC
Q psy9827         271 KEKLSLTIRREV  282 (627)
Q Consensus       271 ~~~v~l~V~r~~  282 (627)
                      ++.++|+|.|..
T Consensus        80 ~~~v~L~v~R~~   91 (93)
T d1rgra_          80 GSIVRLYVMRRK   91 (93)
T ss_dssp             TTEEEEEEECSC
T ss_pred             CCEEEEEEEeCC
Confidence            999999999854

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.1e-12  Score=105.81  Aligned_cols=80  Identities=26%  Similarity=0.438  Sum_probs=67.4

Q ss_pred             CceEEEeccC-CceeEEEEccCC---CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC----
Q psy9827          50 DPRFITFQKE-GSVGIRLTGGNK---VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ----  120 (627)
Q Consensus        50 ~~r~v~l~k~-g~lG~~i~g~~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g----  120 (627)
                      ....|.+.|. ++|||+|.++.+   .+++|..|.|+|||+++| |++||+|++|||.++.++++.+++.+|+.++    
T Consensus         6 ~~~vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~   85 (103)
T d1ufxa_           6 SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             SSEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             CCEEEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCc
Confidence            3466777776 489999998743   358999999999999999 9999999999999999999999999998642    


Q ss_pred             -CeeEEEEEe
Q psy9827         121 -DQIHLIVQN  129 (627)
Q Consensus       121 -~~V~L~v~r  129 (627)
                       ..+.|.+.+
T Consensus        86 ~~~~~l~v~~   95 (103)
T d1ufxa_          86 RDYIDFLVTE   95 (103)
T ss_dssp             CSEEEEEECC
T ss_pred             cceEEEEEeC
Confidence             566676654

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.24  E-value=2.2e-11  Score=100.66  Aligned_cols=73  Identities=23%  Similarity=0.413  Sum_probs=64.8

Q ss_pred             CceeEEEEccC--CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEEEEEeCCc
Q psy9827          60 GSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQNRRD  132 (627)
Q Consensus        60 g~lG~~i~g~~--~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L~v~r~~~  132 (627)
                      .++|+++....  ..+++|..|.+||||++|||++||+|++|||.++.++++.+++.+++ ..+..|+|++.|...
T Consensus         5 ~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3           5 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEEEcCCCCceEEEEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            47898887643  45799999999999999999999999999999999999999999988 678899999998654

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.4e-12  Score=103.67  Aligned_cols=81  Identities=23%  Similarity=0.296  Sum_probs=68.0

Q ss_pred             cEEEEEeecCCCCCeeeeeC----------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         199 TLRVQLSKSRKKDDFGIILG----------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~----------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      .+.|+|.|...+.||.+.++          .|+||++|.+|   ++|++++.|++||+|++|||+++.++++++++++|+
T Consensus         3 ~~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   79 (94)
T d1wf8a1           3 LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEG---GAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   79 (94)
T ss_dssp             EEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTT---CHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             EEEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCC---ChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            36788888766555555432          26999999988   456667789999999999999999999999999999


Q ss_pred             cCCCeEEEEEEeCC
Q psy9827         269 SSKEKLSLTIRREV  282 (627)
Q Consensus       269 ~~~~~v~l~V~r~~  282 (627)
                      ++++.++|+|.|..
T Consensus        80 ~~~~~v~L~V~R~k   93 (94)
T d1wf8a1          80 NTKGNVRFVIGREK   93 (94)
T ss_dssp             HCCSEEEEEEEEEC
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999998853

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.1e-11  Score=100.35  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             ccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .+..|+|.|+..+.||.+..+   .+++|..|.+|    ++|..+||++||+|++|||.++.++++++++++|+++++.+
T Consensus         3 ~Pr~v~l~k~~~g~Gf~i~~~~~~~~~~V~~V~~g----~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v   78 (91)
T d1g9oa_           3 LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPG----SPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAV   78 (91)
T ss_dssp             CCEEEEEECBTTBCCEEEEECTTCSSEEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE
T ss_pred             CCEEEEEEECCCeeeEEEEecCCCCCEEEEEEcCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            356788998866555655554   37999999987    34555679999999999999999999999999999999999


Q ss_pred             EEEEEeCC
Q psy9827         275 SLTIRREV  282 (627)
Q Consensus       275 ~l~V~r~~  282 (627)
                      +|+|.+..
T Consensus        79 ~L~v~~~~   86 (91)
T d1g9oa_          79 RLLVVDPE   86 (91)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99998743

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=9.6e-12  Score=109.06  Aligned_cols=93  Identities=24%  Similarity=0.399  Sum_probs=73.1

Q ss_pred             CCccccccCCCCceE----EEeccCC--ceeEEEEccC------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCC
Q psy9827          39 PDLFSIFFVEPDPRF----ITFQKEG--SVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK  105 (627)
Q Consensus        39 ~d~~~~~~~~~~~r~----v~l~k~g--~lG~~i~g~~------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~  105 (627)
                      ++|...++..+..+.    |.+.+.+  +|||+|.++.      +.++||+.|.|||+|+++| |++||+|++|||.++.
T Consensus        10 g~p~~~~~s~~~~~~~~~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~   89 (127)
T d1wg6a_          10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL   89 (127)
T ss_dssp             SCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred             CCCCccccCCCCCccEEEEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECC
Confidence            344444444444333    3344543  7999999753      2479999999999999999 9999999999999999


Q ss_pred             CCCHHHHHHHHhcC-------CCeeEEEEEeCC
Q psy9827         106 GITREEAVLFLLSL-------QDQIHLIVQNRR  131 (627)
Q Consensus       106 ~~~~~~~~~~l~~~-------g~~V~L~v~r~~  131 (627)
                      +++|.+++.+|+++       ...|+|+|.|..
T Consensus        90 ~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_          90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             CCCHHHHHHHHHhcccccCCCCCEEEEEEeeCC
Confidence            99999999999864       568999999854

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.9e-11  Score=100.79  Aligned_cols=80  Identities=29%  Similarity=0.366  Sum_probs=67.1

Q ss_pred             ccEEEEEeecCCCCCeeeee--C---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL--G---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~--~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      ....|+|.|.....+|||.+  +   .|+||..|.+++    +|..+||++||+|++|||+++.++++.+++.+|++++.
T Consensus         6 e~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g----~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~   81 (91)
T d1m5za_           6 ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAG----PGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGN   81 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTS----HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT
T ss_pred             ceEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCC----hhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC
Confidence            44678888876555666665  2   489999999873    44445699999999999999999999999999999999


Q ss_pred             eEEEEEEeC
Q psy9827         273 KLSLTIRRE  281 (627)
Q Consensus       273 ~v~l~V~r~  281 (627)
                      .++|+|.|+
T Consensus        82 ~v~L~v~R~   90 (91)
T d1m5za_          82 KLDLVISRN   90 (91)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            999999986

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.8e-11  Score=104.69  Aligned_cols=83  Identities=18%  Similarity=0.328  Sum_probs=71.3

Q ss_pred             CccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      ...+.|+|.|...+.+|++..+       .++||.+|.++   ++|++.+.|++||+|++|||+++.+++++|++++|++
T Consensus         7 g~~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~g---g~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~   83 (110)
T d1um1a_           7 GYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPG---SPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             CCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTT---SHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT
T ss_pred             CCEEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECCC---CHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3467899999877777777654       37999999988   4566677899999999999999999999999999999


Q ss_pred             CCCeEEEEEEeCC
Q psy9827         270 SKEKLSLTIRREV  282 (627)
Q Consensus       270 ~~~~v~l~V~r~~  282 (627)
                      ++..++|+|.|..
T Consensus        84 ~~~~v~l~v~r~~   96 (110)
T d1um1a_          84 GGKKMRFLVAKSD   96 (110)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999998854

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.3e-11  Score=98.39  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=66.4

Q ss_pred             EEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy9827         202 VQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  281 (627)
Q Consensus       202 V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~  281 (627)
                      |+|.|+..+.||.+..+.+++|..|.+|    ++|..+||++||+|++|||+++.++++.++..+++++++.++|.|.|-
T Consensus         1 v~l~r~~~g~Gf~l~~~~~~~V~~V~~g----spA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1           1 ITIPRGKDGFGFTICCDSPVRVQAVDSG----GPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             EEEECBTTBTSEEEECSSSCEEEEECTT----SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CEEecCCCcccEEEECCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            5677777777777777789999999887    355556799999999999999999999999999999999999999883

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=2.2e-11  Score=101.21  Aligned_cols=84  Identities=21%  Similarity=0.298  Sum_probs=68.7

Q ss_pred             cEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         199 TLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .++|.|.|...+.||.+..+    .++||.+|.++   ++|++++.|++||+|++|||+++.+++++|++.+|+++++.+
T Consensus         4 i~tV~l~k~~~~lG~~i~g~~~~~~~v~I~~I~~g---~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v   80 (95)
T d1n7ea_           4 IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKG---GLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETV   80 (95)
T ss_dssp             EEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             EEEEEEEECCCcEeEEEEecccCCCCEEEEEECCC---ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            36788877654445555433    47999999987   456667779999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy9827         275 SLTIRREVPRP  285 (627)
Q Consensus       275 ~l~V~r~~~~~  285 (627)
                      .|+|.|.....
T Consensus        81 ~l~v~r~~~~~   91 (95)
T d1n7ea_          81 TLKIKKQTDAQ   91 (95)
T ss_dssp             EEEEECCCCCC
T ss_pred             EEEEEECCCCc
Confidence            99999976544

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=2e-11  Score=102.72  Aligned_cols=83  Identities=16%  Similarity=0.268  Sum_probs=70.3

Q ss_pred             CccEEEEEeecCCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCe
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK  273 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~  273 (627)
                      +.+..|+|.|+..+.||.+..+   .|+||..|.+|   ++|++.+.|++||+|++|||+++.++++++++.+|+++++.
T Consensus         8 ~~~r~V~l~k~~~glG~~i~~~~~~~gv~V~~v~~g---s~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~   84 (102)
T d1tp5a1           8 REPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAG---GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   84 (102)
T ss_dssp             CSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTT---SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCCEEEEEEeCCCcccEEEEeccCCCCEEEEEecCC---chHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCe
Confidence            3568899998766666666554   48999999988   45666677999999999999999999999999999999999


Q ss_pred             EEEEEEeCC
Q psy9827         274 LSLTIRREV  282 (627)
Q Consensus       274 v~l~V~r~~  282 (627)
                      ++|+|.|..
T Consensus        85 v~L~v~~~~   93 (102)
T d1tp5a1          85 VTIIAQYKP   93 (102)
T ss_dssp             EEEEEEECH
T ss_pred             EEEEEEECC
Confidence            999998853

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.7e-11  Score=102.21  Aligned_cols=79  Identities=20%  Similarity=0.306  Sum_probs=63.2

Q ss_pred             cEEEEEeecC-CCCCeeeeeC-------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         199 TLRVQLSKSR-KKDDFGIILG-------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       199 ~~~V~L~k~~-~~~~~gi~~~-------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      +..|.|.|.. .+.||.+.++             .|+||++|.++   ++|++++.|++||+|++|||+++.+++++|++
T Consensus         2 pr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~---s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~   78 (96)
T d2fcfa1           2 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLED---SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV   78 (96)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSS---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCC---CHHHHcCCCcCCCEEEEECCEECCCCCHHHHH
Confidence            4577888763 2344444332             37999999988   45666677999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEe
Q psy9827         265 KLIDSSKEKLSLTIRR  280 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r  280 (627)
                      ++|+++++.++|+|.|
T Consensus        79 ~~lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          79 EAIRKAGNPVVFMVQS   94 (96)
T ss_dssp             HHHHTCCSSEEEEEEC
T ss_pred             HHHHcCCCeEEEEEEE
Confidence            9999999999999987

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.6e-11  Score=100.60  Aligned_cols=80  Identities=25%  Similarity=0.448  Sum_probs=67.2

Q ss_pred             CccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      |....|+|.|...+.||.+..+       .++||.+|.++   ++|++.+.|++||+|++|||+++.++++++++++|++
T Consensus         1 P~~~~V~l~K~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~---g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~   77 (88)
T d2fnea1           1 PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAK---GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKR   77 (88)
T ss_dssp             CEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CeEEEEEEEeCCCccCEEEEeccCCCCCCcCEEEEEEcCC---ChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            3567888988766566666543       27999999987   4666778899999999999999999999999999999


Q ss_pred             CCCeEEEEEE
Q psy9827         270 SKEKLSLTIR  279 (627)
Q Consensus       270 ~~~~v~l~V~  279 (627)
                      +++.++|+|.
T Consensus        78 ~~~~v~L~Vl   87 (88)
T d2fnea1          78 TKGTVTLMVL   87 (88)
T ss_dssp             CCSSEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9999999885

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=1.9e-11  Score=102.46  Aligned_cols=85  Identities=24%  Similarity=0.387  Sum_probs=70.7

Q ss_pred             CCCccEEEEEeecC-CCCCeeeeeC------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHH
Q psy9827         195 PEPQTLRVQLSKSR-KKDDFGIILG------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI  267 (627)
Q Consensus       195 ~~~~~~~V~L~k~~-~~~~~gi~~~------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l  267 (627)
                      +.+..++|+|.|.. .+.||++..+      .++||..|.+|   +.|++++.|++||+|++|||+++.+++++|+.++|
T Consensus         7 p~~~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll   83 (99)
T d1p1da2           7 PSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKG---SVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL   83 (99)
T ss_dssp             CCSSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSS---SHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHH
T ss_pred             CCCCcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCC---chhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHH
Confidence            34567889998853 4456666543      37999999988   45667778999999999999999999999999999


Q ss_pred             HcCCCeEEEEEEeCC
Q psy9827         268 DSSKEKLSLTIRREV  282 (627)
Q Consensus       268 ~~~~~~v~l~V~r~~  282 (627)
                      +++++.++|+|.|+.
T Consensus        84 ~~~~~~v~L~V~r~~   98 (99)
T d1p1da2          84 QQCEDLVKLKIRKDE   98 (99)
T ss_dssp             HHCTTCEEEEEECCC
T ss_pred             HcCCCeEEEEEEeCC
Confidence            999999999999864

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.6e-11  Score=101.57  Aligned_cols=79  Identities=29%  Similarity=0.440  Sum_probs=66.4

Q ss_pred             CceEEEeccC--CceeEEEEccC------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC-
Q psy9827          50 DPRFITFQKE--GSVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL-  119 (627)
Q Consensus        50 ~~r~v~l~k~--g~lG~~i~g~~------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-  119 (627)
                      +.+.+.+.+.  ++|||+|.++.      ..+++|+.|.++|||+++| |++||+|++|||.++.++++.+++.+++.+ 
T Consensus         8 e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~   87 (99)
T d1x5ra1           8 ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAA   87 (99)
T ss_dssp             EEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHH
T ss_pred             eeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4556777764  48999999863      3579999999999999999 999999999999999999999999999854 


Q ss_pred             -CCeeEEEEE
Q psy9827         120 -QDQIHLIVQ  128 (627)
Q Consensus       120 -g~~V~L~v~  128 (627)
                       ...+.|.+.
T Consensus        88 ~~~~l~l~v~   97 (99)
T d1x5ra1          88 LAHKVVLEVE   97 (99)
T ss_dssp             TTTCEEEEEE
T ss_pred             CCCEEEEEEE
Confidence             455666554

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.9e-11  Score=106.83  Aligned_cols=82  Identities=16%  Similarity=0.222  Sum_probs=71.1

Q ss_pred             CCceEEEeccCC-ceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeE
Q psy9827          49 PDPRFITFQKEG-SVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIH  124 (627)
Q Consensus        49 ~~~r~v~l~k~g-~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~  124 (627)
                      ++...+.+.+.. ||||++... +.+++|..|.|||||+++| |++||+|++|||.++.++++.+++.+|+..  +..|+
T Consensus        26 ~~~~~v~l~~g~~GlG~~i~~~-~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~  104 (126)
T d1wifa_          26 NKVIQTKLTVGNLGLGLVVIQN-GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQ  104 (126)
T ss_dssp             CCEEEEEEECCTTCCCCCEEEE-TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEE
T ss_pred             CcEEEEEEeeCCCcEEEEEEec-CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEE
Confidence            345566677754 899999876 4579999999999999999 999999999999999999999999999863  68999


Q ss_pred             EEEEeCC
Q psy9827         125 LIVQNRR  131 (627)
Q Consensus       125 L~v~r~~  131 (627)
                      |+|.|..
T Consensus       105 L~v~R~~  111 (126)
T d1wifa_         105 IKAYRGF  111 (126)
T ss_dssp             EEEESSS
T ss_pred             EEEEeCC
Confidence            9999854

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.8e-11  Score=99.09  Aligned_cols=83  Identities=20%  Similarity=0.305  Sum_probs=68.0

Q ss_pred             CCCccEEEEEeecCCCCCeeeeeC----------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         195 PEPQTLRVQLSKSRKKDDFGIILG----------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~~~~~gi~~~----------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      -....++|+|.|...+.||.+..+          .++||++|.+|+    +|..+||++||+|++|||+++.++++.+++
T Consensus         5 ~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg----~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~   80 (97)
T d1x5qa1           5 IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEG----PAARAGVRVGDKLLEVNGVALQGAEHHEAV   80 (97)
T ss_dssp             CCCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTS----HHHHHTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             cCCeEEEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCC----hhHhhcccCCCEEEEECCEECCCCCHHHHH
Confidence            345668889998766555555433          379999999873    444456999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEeC
Q psy9827         265 KLIDSSKEKLSLTIRRE  281 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~  281 (627)
                      .+|++++..++|+|.|+
T Consensus        81 ~~l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          81 EALRGAGTAVQMRVWRE   97 (97)
T ss_dssp             HHHHSCCSEEEEEEEEC
T ss_pred             HHHhCCCCEEEEEEEEC
Confidence            99999999999999984

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=5.2e-11  Score=97.83  Aligned_cols=81  Identities=21%  Similarity=0.266  Sum_probs=66.6

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE  272 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~  272 (627)
                      +..+|+|.|.. .++||.+..+    .++||..|.++   ++|++++.|++||+|++|||+++.++++++++.+|+++++
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~---~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~   80 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKG---LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGK   80 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTT---SHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCC---CceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45678888764 3344555432    47999999988   4566677899999999999999999999999999999999


Q ss_pred             eEEEEEEeC
Q psy9827         273 KLSLTIRRE  281 (627)
Q Consensus       273 ~v~l~V~r~  281 (627)
                      .++|+|.|-
T Consensus        81 ~v~l~v~~~   89 (90)
T d1qava_          81 EVVLEVKYM   89 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEEe
Confidence            999999873

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=4.2e-11  Score=100.04  Aligned_cols=79  Identities=20%  Similarity=0.376  Sum_probs=65.4

Q ss_pred             EEEEEeecCCCCCeeeee--C-------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         200 LRVQLSKSRKKDDFGIIL--G-------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~--~-------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      ..|.|.|.....+|||.+  +             .|+||+.|.+|   ++|++.+.|++||+|++|||+++.++++++++
T Consensus         4 r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~g---g~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~   80 (98)
T d1rzxa_           4 RRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPG---GLAESTGLLAVNDEVIEVNGIEVAGKTLDQVT   80 (98)
T ss_dssp             EEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTT---CHHHHHTCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             EEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCC---ChHHhcCcCCCCcEEeeECCEECCCCCHHHHH
Confidence            467788765555555554  2             26999999988   45666777999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEeC
Q psy9827         265 KLIDSSKEKLSLTIRRE  281 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~  281 (627)
                      .+|+.+++.++|+|.+.
T Consensus        81 ~~l~~~~~~v~l~v~p~   97 (98)
T d1rzxa_          81 DMMVANSSNLIITVKPA   97 (98)
T ss_dssp             HHHHHTCTEEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEeC
Confidence            99999999999999763

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.2e-11  Score=104.04  Aligned_cols=84  Identities=20%  Similarity=0.314  Sum_probs=69.9

Q ss_pred             ccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ..+.|+|.|...++||.+.++       .++||.+|.+|   ++|++.+.|++||+|++|||+++.+++++|++++|+.+
T Consensus        29 ~~~~V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~  105 (130)
T d1i16a_          29 TVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKG---AASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             EEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSS---CCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             eEEEEEEEeCCCccCEEEeeccCCCCCCCCEEEEEECCC---ChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcC
Confidence            456788888766666666653       37999999988   56777788999999999999999999999999999987


Q ss_pred             C-CeEEEEEEeCCCC
Q psy9827         271 K-EKLSLTIRREVPR  284 (627)
Q Consensus       271 ~-~~v~l~V~r~~~~  284 (627)
                      + ..++|+|.|....
T Consensus       106 ~~~~v~l~v~r~~~~  120 (130)
T d1i16a_         106 PDGPVTIVIRRKSLQ  120 (130)
T ss_dssp             CSSEEEEEEEEESSC
T ss_pred             CCCeEEEEEEcCCCC
Confidence            5 4899999986543

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.6e-11  Score=95.60  Aligned_cols=75  Identities=8%  Similarity=0.160  Sum_probs=62.9

Q ss_pred             EEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy9827         201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  280 (627)
Q Consensus       201 ~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r  280 (627)
                      +|.+.+.....+|||.+..+ +|.+|.+|+    +|..++|++||+|++|||+++.+++++++.++|+++++.++|+|.+
T Consensus         3 tv~l~r~~~~~~lGf~i~~g-~V~~V~~gs----~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~viP   77 (79)
T d1y7na1           3 TVLIRRPDLRYQLGFSVQNG-IICSLMRGG----IAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP   77 (79)
T ss_dssp             EEEEEESSTTSCCCEEEETT-EEEEECTTS----HHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             EEEEEcCCCCCCcCEEEECC-EEEEEcCCC----HHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEEc
Confidence            45666655667778777655 689999873    4445889999999999999999999999999999999999999976

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=4.8e-12  Score=105.59  Aligned_cols=70  Identities=17%  Similarity=0.144  Sum_probs=59.5

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHHHH
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATA  391 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~  391 (627)
                      +||||+|+|   ++.+|+..||.++.|.+||||+| +.+.|.    .||+++.++..+...+.|+|||+.++|+....
T Consensus         2 ~~vrAlydy---~~~~d~~~~~~eLsf~kGdil~V-~~~~d~----~WW~~~~~~~~~~~g~~G~~Psnyv~e~~~~~   71 (96)
T d1kjwa1           2 FYIRALFDY---DKTKDCGFLSQALSFRFGDVLHV-IDAGDE----EWWQARRVHSDSETDDIGFIPSKRRVERREWS   71 (96)
T ss_dssp             EEEEESSCB---CHHHHHCCCSSBCCBCTTCEEEE-EECCSS----SEEEEEECCSSCCCSCCEEEECHHHHHHHHHT
T ss_pred             EEEEEcccC---cCCcCCCCCCccceEcCCCEEEE-eeeccC----ceEEEEEccCCCCCCCEeEEeccceeeehhhh
Confidence            799999999   77788888999999999999999 777765    89999988765556799999999998866543

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7e-11  Score=95.18  Aligned_cols=78  Identities=15%  Similarity=0.252  Sum_probs=64.2

Q ss_pred             ccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT  277 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~  277 (627)
                      .+.+|+|.|...+ +|||.+..+ +|..|.+|+    +|..+||++||+|++|||+++.++++++++.+|+++++.++|+
T Consensus         4 ~pr~V~l~k~~~g-~~Gf~i~~g-~V~~v~~g~----~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~   77 (82)
T d1r6ja_           4 DPRTITMHKDSTG-HVGFIFKNG-KITSIVKDS----SAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT   77 (82)
T ss_dssp             CCEEEEEECCTTS-CCCEEEETT-EEEEECTTS----HHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CCEEEEEEeCCCC-CcCEEEEEE-EEEEECCCC----hHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEE
Confidence            4578889986543 577776555 689998873    4444569999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy9827         278 IRRE  281 (627)
Q Consensus       278 V~r~  281 (627)
                      |.+.
T Consensus        78 v~p~   81 (82)
T d1r6ja_          78 IMPA   81 (82)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            9863

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=4.9e-11  Score=98.82  Aligned_cols=82  Identities=28%  Similarity=0.378  Sum_probs=65.4

Q ss_pred             ccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCe
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK  273 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~  273 (627)
                      ..++|++. +..+++|.+..+    .+++|..|.++    ++|..++|++||+|++|||+++.++++++++.+|++++..
T Consensus         6 ~~~tv~~~-g~~~~Gf~i~gg~d~~~~i~V~~v~~g----s~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~   80 (94)
T d1vb7a_           6 SGLTVDVA-GPAPWGFRISGGRDFHTPIIVTKVTER----GKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASP   80 (94)
T ss_dssp             CCEEEEEC-SSSCCSBCCEEETTTTEEEECCCBCTT----SSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS
T ss_pred             ceEEEEEE-CCCcCCEEEEeeccCCCCEEEEeccCC----ChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            34566653 334555655553    37999999987    3445688999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCC
Q psy9827         274 LSLTIRREVPR  284 (627)
Q Consensus       274 v~l~V~r~~~~  284 (627)
                      ++|+|.|...+
T Consensus        81 v~L~V~R~~~p   91 (94)
T d1vb7a_          81 LRLQLDRSSGP   91 (94)
T ss_dssp             EEEEEECCCCC
T ss_pred             EEEEEEECCCC
Confidence            99999996553

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.9e-11  Score=104.68  Aligned_cols=87  Identities=22%  Similarity=0.290  Sum_probs=70.1

Q ss_pred             CCccEEEEEeecC-CCCCeeeeeC-------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHH
Q psy9827         196 EPQTLRVQLSKSR-KKDDFGIILG-------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVK  261 (627)
Q Consensus       196 ~~~~~~V~L~k~~-~~~~~gi~~~-------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~  261 (627)
                      .+....|+|.|.. ..++|.+..+             .++||..|.++   ++|++++.|++||+|++|||+++.+++++
T Consensus         7 g~~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~t~~   83 (111)
T d1ujua_           7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPT---GAAGRDGRLRVGLRLLEVNQQSLLGLTHG   83 (111)
T ss_dssp             SCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTT---SHHHHHSSCCTTCBCCBBSSCBCTTSCHH
T ss_pred             CCCeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCC---ChHHHcCCCccceeeeeeCCcccCCCCHH
Confidence            3455678888864 3445555432             37999999988   45666778999999999999999999999


Q ss_pred             HHHHHHHcCCCeEEEEEEeCCCCC
Q psy9827         262 EARKLIDSSKEKLSLTIRREVPRP  285 (627)
Q Consensus       262 e~~~~l~~~~~~v~l~V~r~~~~~  285 (627)
                      |++++|++++..++|+|.|.....
T Consensus        84 ea~~~lk~~~~~v~L~V~r~~~~~  107 (111)
T d1ujua_          84 EAVQLLRSVGDTLTVLVCDGFESG  107 (111)
T ss_dssp             HHHHHHSSCSSEEEECCCCCCCCS
T ss_pred             HHHHHHHcCCCeEEEEEEECCCCc
Confidence            999999999999999999876544

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=7.8e-11  Score=96.44  Aligned_cols=72  Identities=21%  Similarity=0.292  Sum_probs=61.3

Q ss_pred             CceeEEEEccC-CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827          60 GSVGIRLTGGN-KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR  131 (627)
Q Consensus        60 g~lG~~i~g~~-~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~  131 (627)
                      .+||+.+.... ..|++|..|.|+|||+++||++||+|++|||.++.++.+.........+++.+.|+|.|..
T Consensus         3 ~~LGv~~~~~~~~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~~~~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1           3 ASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             EECCEEEECCC-CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CEEeEEEEecCCCCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCCcHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            46899888753 4689999999999999999999999999999999988766655555578999999999843

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.4e-11  Score=99.51  Aligned_cols=84  Identities=24%  Similarity=0.381  Sum_probs=66.9

Q ss_pred             ccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC--
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~--  271 (627)
                      ..+.|.|.|...+++|.+..+    .+++|..|.++   ++|++++.|++||+|++|||+++.+++++|++++|+++.  
T Consensus         9 ~~~~V~l~k~~~glG~~i~gg~~~~~~i~V~~v~~g---~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~   85 (103)
T d1uepa_           9 KELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAM---GSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARN   85 (103)
T ss_dssp             EEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTT---STTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCceEeEEEEecccCCCcEEEEEECCC---ChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            456677887655555555443    36999999988   456667789999999999999999999999999999864  


Q ss_pred             CeEEEEEEeCCCC
Q psy9827         272 EKLSLTIRREVPR  284 (627)
Q Consensus       272 ~~v~l~V~r~~~~  284 (627)
                      ..++|+|.|....
T Consensus        86 ~~v~l~v~r~~~s   98 (103)
T d1uepa_          86 GQVNLTVRRKVLS   98 (103)
T ss_dssp             TEEEEEEEEECCC
T ss_pred             CEEEEEEEeCCCC
Confidence            5799999886543

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=7.3e-11  Score=97.88  Aligned_cols=77  Identities=25%  Similarity=0.339  Sum_probs=62.1

Q ss_pred             EEEEeecC-CCCCeeeeeC----------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         201 RVQLSKSR-KKDDFGIILG----------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       201 ~V~L~k~~-~~~~~gi~~~----------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      .|+|.|.. .++||.+..+          .|+||.+|.+|   ++|++++.|++||+|++|||+++.++++++++++|++
T Consensus         6 ~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~g---s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~   82 (94)
T d1ihja_           6 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPD---SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   82 (94)
T ss_dssp             EEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTT---SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCC---CHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHc
Confidence            46676643 2344444332          26999999988   4566677899999999999999999999999999999


Q ss_pred             CCCeEEEEEEe
Q psy9827         270 SKEKLSLTIRR  280 (627)
Q Consensus       270 ~~~~v~l~V~r  280 (627)
                      ++..++|+|.|
T Consensus        83 ~~~~v~L~V~R   93 (94)
T d1ihja_          83 ADFKIELEIQT   93 (94)
T ss_dssp             SCSEEEEEEEE
T ss_pred             CCCEEEEEEEe
Confidence            99999999987

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.5e-10  Score=99.35  Aligned_cols=86  Identities=27%  Similarity=0.306  Sum_probs=70.0

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-  270 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-  270 (627)
                      ....+.|.|.|...+.+|.+..+    .+++|.+|.++   +.|++++.|++||+|++|||+++.+++++|++++|+.+ 
T Consensus        17 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~g---g~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~   93 (123)
T d1ueqa_          17 KGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPD---GPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             CSEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTT---SHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCeEEEEEEEECCCeeCEEEEeecCCCCCEEEEEECCC---CHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34567788888766555655553    47999999988   56677788999999999999999999999999999986 


Q ss_pred             -CCeEEEEEEeCCCC
Q psy9827         271 -KEKLSLTIRREVPR  284 (627)
Q Consensus       271 -~~~v~l~V~r~~~~  284 (627)
                       +..+.|+|.|+...
T Consensus        94 ~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          94 IGQSVNLVLCRGYPL  108 (123)
T ss_dssp             TTCEEEEEEEESCCC
T ss_pred             CCCEEEEEEEcCCCC
Confidence             46899999996544

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.2e-10  Score=95.22  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=64.7

Q ss_pred             cEEEEEeecCC-CCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         199 TLRVQLSKSRK-KDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       199 ~~~V~L~k~~~-~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      +..|.|.|... +.||.+..+  .+++|.+|.+|   ++|++++.|++||+|++|||+++.++++++++++|+++++.++
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~g---g~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~   78 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHG---GMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT   78 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTT---SHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCCCCEEEEEECCC---CHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            35677777542 344444443  48999999988   4566677799999999999999999999999999999999999


Q ss_pred             EEEEeC
Q psy9827         276 LTIRRE  281 (627)
Q Consensus       276 l~V~r~  281 (627)
                      |+|.+.
T Consensus        79 L~i~p~   84 (88)
T d1kwaa_          79 FKIVPS   84 (88)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999853

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.9e-10  Score=95.65  Aligned_cols=77  Identities=26%  Similarity=0.359  Sum_probs=62.5

Q ss_pred             cEEEEEeecCCCCCeeeeeC------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         199 TLRVQLSKSRKKDDFGIILG------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      .+.|.+.+. .+.||++.++            .|+||+.|.++++   |+  +.|++||+|++|||+++.++++++++++
T Consensus        12 ~v~v~~~~~-~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~---A~--~~L~~GD~Il~VNg~~v~~~t~~eav~~   85 (103)
T d2h3la1          12 EIRVRVEKD-PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGP---AS--KLLQPGDKIIQANGYSFINIEHGQAVSL   85 (103)
T ss_dssp             EEEEEEECS-SSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTST---TT--TTCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             EEEEEEccC-CCCCEEEeeecCCCCCccccCCCCEEEEEeCCCCh---HH--hccCCCCEEEEECCEECCCCCHHHHHHH
Confidence            345555553 4567777654            2799999999843   32  3499999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeC
Q psy9827         267 IDSSKEKLSLTIRRE  281 (627)
Q Consensus       267 l~~~~~~v~l~V~r~  281 (627)
                      |+++++.++|+|.|.
T Consensus        86 l~~~~~~v~L~V~R~  100 (103)
T d2h3la1          86 LKTFQNTVELIIVRE  100 (103)
T ss_dssp             HHHCCSEEEEEEEEE
T ss_pred             HHhCCCeEEEEEEEE
Confidence            999999999999985

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.7e-10  Score=98.32  Aligned_cols=82  Identities=21%  Similarity=0.277  Sum_probs=68.7

Q ss_pred             ccEEEEEeecCCCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         198 QTLRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      .+..|+|.|...+++|.+..+  .|+||..|.+++    +|..++|++||+|++|||+++.++++++++.+|+.++..++
T Consensus        19 ~~r~v~l~k~~~glG~~i~gg~~~gi~V~~V~~gs----~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~   94 (117)
T d1uita_          19 EPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGS----IAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT   94 (117)
T ss_dssp             CCEEEEEECSSCCCCEEEEECTTSCEEEEEECTTS----HHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred             CCEEEEEEeCCCccCEEEEccCCCCEEEEEEecCC----hHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEE
Confidence            456888888766666666654  489999999873    44567899999999999999999999999999999999999


Q ss_pred             EEEEeCCC
Q psy9827         276 LTIRREVP  283 (627)
Q Consensus       276 l~V~r~~~  283 (627)
                      |+|.|...
T Consensus        95 l~v~~~p~  102 (117)
T d1uita_          95 ILAQYNPH  102 (117)
T ss_dssp             EEECCCSC
T ss_pred             EEEEECCc
Confidence            99987644

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5e-10  Score=96.19  Aligned_cols=85  Identities=20%  Similarity=0.195  Sum_probs=68.4

Q ss_pred             CccEEEEEeecCC-CCCeeeeeC-----------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHH
Q psy9827         197 PQTLRVQLSKSRK-KDDFGIILG-----------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEAR  264 (627)
Q Consensus       197 ~~~~~V~L~k~~~-~~~~gi~~~-----------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~  264 (627)
                      .....|.|.|... +++|.+..+           .++||..|.+|   ++|++.+.|++||+|++|||+++.++++++++
T Consensus         9 ~~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~   85 (114)
T d1uewa_           9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDG---SPADRCAKLKVGDRILAVNGQSIINMPHADIV   85 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTT---CTTGGGSSCCTTCBEEEETTBCTTTSCHHHHH
T ss_pred             ceeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCC---CHHHhhccCCcCcEEeEeCCcccCCCcHHHHH
Confidence            4567888887542 344444432           26899999988   45666788999999999999999999999999


Q ss_pred             HHHHcCCCeEEEEEEeCCCC
Q psy9827         265 KLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       265 ~~l~~~~~~v~l~V~r~~~~  284 (627)
                      ++|++++..++|+|.|....
T Consensus        86 ~ll~~~~~~v~l~V~r~~~~  105 (114)
T d1uewa_          86 KLIKDAGLSVTLRIIPQEEL  105 (114)
T ss_dssp             HHHHHTTTEEEEEECCCSCC
T ss_pred             HHHHcCCCeEEEEEEeCCCc
Confidence            99999999999999986543

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.5e-11  Score=100.26  Aligned_cols=87  Identities=22%  Similarity=0.326  Sum_probs=71.9

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ....++|.|.|...++||.+..+    .+++|..|.++   ++|++.+.|++||+|++|||+++.+++++|++++|+.++
T Consensus         9 ~~e~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~g---g~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~   85 (103)
T d1wfva_           9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAED---GPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG   85 (103)
T ss_dssp             CSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTT---SHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred             CceEEEEEEEeCCCccCEEEEeeccCCCCEEEEEEcCC---ChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC
Confidence            45678888988765555555443    27999999987   466777889999999999999999999999999999999


Q ss_pred             CeEEEEEEeCCCCC
Q psy9827         272 EKLSLTIRREVPRP  285 (627)
Q Consensus       272 ~~v~l~V~r~~~~~  285 (627)
                      ..++|+|.|.....
T Consensus        86 ~~v~l~v~R~~~s~   99 (103)
T d1wfva_          86 RRVRLLLKRGTGSG   99 (103)
T ss_dssp             SEECEEEECTTCSS
T ss_pred             CEEEEEEEECCCCc
Confidence            99999999976543

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.8e-10  Score=100.54  Aligned_cols=81  Identities=21%  Similarity=0.463  Sum_probs=64.1

Q ss_pred             ceEEEeccC---CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc-CCC
Q psy9827          51 PRFITFQKE---GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS-LQD  121 (627)
Q Consensus        51 ~r~v~l~k~---g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~-~g~  121 (627)
                      .+.|.|.+.   ++|||+|.++.    ..||||+.|.|||||+++| |++||+|++|||.++.+++  ++..+++. .+.
T Consensus        20 ~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~--~~~~~l~~~~~~   97 (124)
T d1wh1a_          20 LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVALLTSEENK   97 (124)
T ss_dssp             ECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHH--HHHHHHTCSSCC
T ss_pred             eEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCHH--HHHHHHhhCCCC
Confidence            345666663   37999999863    4689999999999999999 9999999999999998654  45555664 577


Q ss_pred             eeEEEEEeCCcc
Q psy9827         122 QIHLIVQNRRDE  133 (627)
Q Consensus       122 ~V~L~v~r~~~~  133 (627)
                      .|.|++.|....
T Consensus        98 ~v~l~v~r~~~~  109 (124)
T d1wh1a_          98 NFSLLIARPELQ  109 (124)
T ss_dssp             SCCEEEEECSSC
T ss_pred             cEEEEEEeCCCc
Confidence            899999875543

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.2e-10  Score=93.48  Aligned_cols=80  Identities=18%  Similarity=0.231  Sum_probs=63.7

Q ss_pred             CCceEEEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEE
Q psy9827          49 PDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHL  125 (627)
Q Consensus        49 ~~~r~v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L  125 (627)
                      .+...|.+.|. .+|||+|.++.....++..   ..++..++|++||+|++|||.++.+++|.+++.+|+.+  +..|+|
T Consensus         9 ~e~~~v~l~k~~~glGf~i~g~~~~~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l   85 (96)
T d1ujva_           9 AELMTLTIVKGAQGFGFTIADSPTGQRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSL   85 (96)
T ss_dssp             CCCEEEEEECCSSSSSEEEEEETTEEEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEE
T ss_pred             ceEEEEEEEeCCCcccEEEEeeCCCceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            45677888886 4899999987554333333   23555577999999999999999999999999999864  689999


Q ss_pred             EEEeCC
Q psy9827         126 IVQNRR  131 (627)
Q Consensus       126 ~v~r~~  131 (627)
                      +|.|..
T Consensus        86 ~v~R~~   91 (96)
T d1ujva_          86 IIHRGS   91 (96)
T ss_dssp             EEECCS
T ss_pred             EEEECC
Confidence            999854

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.05  E-value=1.3e-10  Score=95.88  Aligned_cols=79  Identities=19%  Similarity=0.332  Sum_probs=64.2

Q ss_pred             EEEEEeecC-CCCCeeeeeC------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--
Q psy9827         200 LRVQLSKSR-KKDDFGIILG------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--  270 (627)
Q Consensus       200 ~~V~L~k~~-~~~~~gi~~~------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--  270 (627)
                      ++|+|.+.. .++||.+.++      .|+||++|.+|   ++|++++.|++||+|++|||+++.++++++++++|+.+  
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~g---g~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~   79 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKG---GAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVH   79 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCC---CcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccC
Confidence            467777753 3456666544      38999999988   46667788999999999999999999999999999863  


Q ss_pred             -CCeEEEEEEeC
Q psy9827         271 -KEKLSLTIRRE  281 (627)
Q Consensus       271 -~~~v~l~V~r~  281 (627)
                       .+.++|+|.|.
T Consensus        80 ~~~~v~L~V~R~   91 (92)
T d2f0aa1          80 KPGPIVLTVAKL   91 (92)
T ss_dssp             SSSCEEEEEECC
T ss_pred             CCCcEEEEEEeC
Confidence             56799999884

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=8.8e-10  Score=92.26  Aligned_cols=82  Identities=23%  Similarity=0.290  Sum_probs=63.7

Q ss_pred             CCCccEEEEEeec-CCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         195 PEPQTLRVQLSKS-RKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       195 ~~~~~~~V~L~k~-~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      .......|.+.+. ..+.||++..+    .|+||..|.+++    +|..++|++||+|++|||+++.++++++++++|+.
T Consensus         5 ~~~~~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs----~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~   80 (101)
T d1x5na1           5 RENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGS----LSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS   80 (101)
T ss_dssp             CCCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTS----TTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH
T ss_pred             cCCccEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCC----hHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhC
Confidence            3445677777663 44566666654    389999999873    34457899999999999999999999999999998


Q ss_pred             CCCeEEEEEEeC
Q psy9827         270 SKEKLSLTIRRE  281 (627)
Q Consensus       270 ~~~~v~l~V~r~  281 (627)
                      ++ .+++.|.+.
T Consensus        81 ~~-~~~l~v~~~   91 (101)
T d1x5na1          81 SR-SLTISIVAA   91 (101)
T ss_dssp             CS-SEEEEECSS
T ss_pred             CC-CEEEEEEEC
Confidence            76 477777663

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3e-10  Score=98.06  Aligned_cols=85  Identities=22%  Similarity=0.258  Sum_probs=69.9

Q ss_pred             CccEEEEEeecCC-CCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         197 PQTLRVQLSKSRK-KDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       197 ~~~~~V~L~k~~~-~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ..++.|.|.|... ++||++..+     .++||.+|.++   +.|++.+.|++||+|++|||+++.++++++++.+|+++
T Consensus        14 ~~p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~   90 (117)
T d1v62a_          14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPA---SVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI   90 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTT---SHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC
T ss_pred             CCCEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCC---CHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcC
Confidence            3567788888643 456666543     47999999988   45666788999999999999999999999999999999


Q ss_pred             CCeEEEEEEeCCCC
Q psy9827         271 KEKLSLTIRREVPR  284 (627)
Q Consensus       271 ~~~v~l~V~r~~~~  284 (627)
                      ...++|+|.|....
T Consensus        91 ~~~v~l~v~~~~~~  104 (117)
T d1v62a_          91 SEKVRLEILPVPQS  104 (117)
T ss_dssp             SSEEEEEECCBTTB
T ss_pred             CCcEEEEEEECCCC
Confidence            99999999886543

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.5e-09  Score=90.04  Aligned_cols=83  Identities=22%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             CCCccEEEEEeecCCCCCeeeeeC-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--C
Q psy9827         195 PEPQTLRVQLSKSRKKDDFGIILG-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--K  271 (627)
Q Consensus       195 ~~~~~~~V~L~k~~~~~~~gi~~~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~  271 (627)
                      .....++|+|.|+..+.+|.+..+ .+..+..+.      .++..++|++||+|++|||+++.+++|+|++++|+++  +
T Consensus         7 ~~~e~~~v~l~k~~~glGf~i~g~~~~~~~~~~~------~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g   80 (96)
T d1ujva_           7 GQAELMTLTIVKGAQGFGFTIADSPTGQRVKQIL------DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIG   80 (96)
T ss_dssp             CCCCCEEEEEECCSSSSSEEEEEETTEEEEEEES------CGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTT
T ss_pred             CCceEEEEEEEeCCCcccEEEEeeCCCceEeecc------CcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCC
Confidence            344568899999876555555554 344444442      3555689999999999999999999999999999985  4


Q ss_pred             CeEEEEEEeCCC
Q psy9827         272 EKLSLTIRREVP  283 (627)
Q Consensus       272 ~~v~l~V~r~~~  283 (627)
                      ..++|+|.|...
T Consensus        81 ~~v~l~v~R~~~   92 (96)
T d1ujva_          81 SETSLIIHRGSG   92 (96)
T ss_dssp             SEEEEEEECCSS
T ss_pred             CEEEEEEEECCC
Confidence            689999999643

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=4.6e-10  Score=94.66  Aligned_cols=81  Identities=22%  Similarity=0.281  Sum_probs=63.3

Q ss_pred             CccEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ..+..|+|.|.. .+++|.+..+    .|+||..|.+++    +|..++|++||+|++|||+++.++++++++.+|+.+.
T Consensus        14 ~~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s----~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~~   89 (104)
T d1wi2a_          14 FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDS----DAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR   89 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTS----HHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHSS
T ss_pred             CcCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCC----hhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            345778888864 3445555543    379999999873    3344569999999999999999999999999999875


Q ss_pred             CeEEEEEEeCC
Q psy9827         272 EKLSLTIRREV  282 (627)
Q Consensus       272 ~~v~l~V~r~~  282 (627)
                       .++|+|.|..
T Consensus        90 -~v~l~V~~~~   99 (104)
T d1wi2a_          90 -EISMRVRFFS   99 (104)
T ss_dssp             -SEEEEEECCC
T ss_pred             -eEEEEEEECC
Confidence             6899997754

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=4.4e-10  Score=93.34  Aligned_cols=81  Identities=23%  Similarity=0.367  Sum_probs=62.2

Q ss_pred             CCccEEEEEeecCCCCCeeeeeC------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827         196 EPQTLRVQLSKSRKKDDFGIILG------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS  269 (627)
Q Consensus       196 ~~~~~~V~L~k~~~~~~~gi~~~------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~  269 (627)
                      .+....+++.+. .+.||.+.++      .++||+.|.+|   ++|++++.|++||+|++|||+++.++++++++++|++
T Consensus         6 ~~~~~~v~~~~~-~glG~~i~gg~~~~~~~~i~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~   81 (96)
T d1wi4a1           6 DPAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPG---GDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR   81 (96)
T ss_dssp             CTTEEEEEECCS-SCCCEEEEECSSSSSCSSEEEEEECTT---SHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEEecCC-CccCEEEEeccCCCCCCCEEEEEEeCC---CccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            344455555553 3556666543      37999999988   4566677799999999999999999999999999998


Q ss_pred             CC----CeEEEEEEe
Q psy9827         270 SK----EKLSLTIRR  280 (627)
Q Consensus       270 ~~----~~v~l~V~r  280 (627)
                      +.    ..+.|.+.|
T Consensus        82 ~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          82 AKLRSESPWEIAFIR   96 (96)
T ss_dssp             SCCSSSSCEEEEEEC
T ss_pred             ccCCCCCeEEEEEEC
Confidence            63    568887765

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.9e-10  Score=95.69  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=59.9

Q ss_pred             EEEEeecC-CCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827         201 RVQLSKSR-KKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL  274 (627)
Q Consensus       201 ~V~L~k~~-~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v  274 (627)
                      .|.|.|.. .++||.+.++     .++||.+|.+|   ++|++++.|++||+|++|||+++.++++++++++|+.+...+
T Consensus        11 ~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~g---s~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~   87 (107)
T d1x6da1          11 VTILHKEEGAGLGFSLAGGADLENKVITVHRVFPN---GLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR   87 (107)
T ss_dssp             EEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSS---SHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSS
T ss_pred             EEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCC---CHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCE
Confidence            44555542 2344444433     48999999988   456667789999999999999999999999999999988776


Q ss_pred             EEEEEeC
Q psy9827         275 SLTIRRE  281 (627)
Q Consensus       275 ~l~V~r~  281 (627)
                      .+++.+.
T Consensus        88 ~l~v~~r   94 (107)
T d1x6da1          88 QAVIVTR   94 (107)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            6666553

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=9.3e-10  Score=92.85  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  281 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~  281 (627)
                      +++|..|.+|    ++|..+||++||+|++|||+++.++++++++.+|++++..++|+|.+.
T Consensus        44 ~~~I~~v~~g----~~A~~aGL~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          44 LQYLESVDEG----GVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             SEEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CEEEEEECCC----CHHHHcCCCCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            5899999987    355567899999999999999999999999999999999999999874

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.1e-10  Score=99.73  Aligned_cols=79  Identities=16%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             EEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC-CeEEEEE
Q psy9827         200 LRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTI  278 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~-~~v~l~V  278 (627)
                      ..|+|.|...+.||.+..+.+++|..|.+++    +|..++|++||+|++|||+++.+++++|++++|+.++ ..++|+|
T Consensus        17 r~v~l~k~~~g~Gf~i~g~~~v~V~~V~~~s----pA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v   92 (111)
T d1vaea_          17 RGIHFTVEEGDLGFTLRGNTPVQVHFLDPHC----SASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV   92 (111)
T ss_dssp             CCCCEECCSSCCSCCEESSSSCEECCCCTTS----SHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEE
T ss_pred             EEEEEEECCCccCEEEECCccEEEEEEcCCC----hHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEE
Confidence            4677888766666666656789999999873    4444569999999999999999999999999999875 5788988


Q ss_pred             EeCC
Q psy9827         279 RREV  282 (627)
Q Consensus       279 ~r~~  282 (627)
                      .+..
T Consensus        93 ~~~~   96 (111)
T d1vaea_          93 VSLL   96 (111)
T ss_dssp             ECEE
T ss_pred             ECCC
Confidence            7643

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=3.2e-10  Score=95.35  Aligned_cols=75  Identities=24%  Similarity=0.373  Sum_probs=62.9

Q ss_pred             ecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy9827         206 KSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  281 (627)
Q Consensus       206 k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~  281 (627)
                      ++...++|.+..+    .+++|+.|.++    .+|..++|++||+|++|||+++.+++++|++.+|+.+...++|+|.|.
T Consensus        12 ~g~~~~Gf~l~gg~d~~~~i~V~~v~~g----~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~   87 (103)
T d1v5la_          12 PGPAPWGFRLSGGIDFNQPLVITRITPG----SKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA   87 (103)
T ss_dssp             ESSSCCSBCCEEETTTTEEEECSCBCTT----STTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCC
T ss_pred             ECCCCCCEEEEeecCCCCCEEEEEccCC----ChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence            4445566666654    37999999887    355578899999999999999999999999999999999999999997


Q ss_pred             CCC
Q psy9827         282 VPR  284 (627)
Q Consensus       282 ~~~  284 (627)
                      ...
T Consensus        88 ~~~   90 (103)
T d1v5la_          88 ETR   90 (103)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            654

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=3.8e-10  Score=95.00  Aligned_cols=79  Identities=22%  Similarity=0.316  Sum_probs=63.7

Q ss_pred             EEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEE
Q psy9827         201 RVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL  276 (627)
Q Consensus       201 ~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l  276 (627)
                      .|++.. ..+++|.+..+    .+++|..|.++    ++|..++|++||+|++|||+++.+++++|++++|++++..+.|
T Consensus         8 ~v~~~g-~~g~Gf~i~gg~d~~~~v~V~~v~~g----~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L   82 (103)
T d1wf7a_           8 SVSLVG-PAPWGFRLQGGKDFNMPLTISSLKDG----GKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM   82 (103)
T ss_dssp             EEEEES-SSCCSCCEEEETTTTEEEEECCCCTT----CHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEE
T ss_pred             EEEEEC-CCCccEEEEcccCCCCCEEEEecCCC----ChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            344433 33455555554    37999999876    4566789999999999999999999999999999999999999


Q ss_pred             EEEeCCCC
Q psy9827         277 TIRREVPR  284 (627)
Q Consensus       277 ~V~r~~~~  284 (627)
                      +|.|....
T Consensus        83 ~v~R~~~~   90 (103)
T d1wf7a_          83 TLQRASAA   90 (103)
T ss_dssp             EECCCSCC
T ss_pred             EEEECCCC
Confidence            99987654

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.3e-10  Score=93.75  Aligned_cols=82  Identities=18%  Similarity=0.258  Sum_probs=63.1

Q ss_pred             CccEEEEEeecCC-CCCeeeeeC----CcEEEEEeccCCCCCCCCC-CCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827         197 PQTLRVQLSKSRK-KDDFGIILG----NKIFVKEVTHRLDNNASPG-THQLAEGDVLLKINNHPTDGMSVKEARKLIDSS  270 (627)
Q Consensus       197 ~~~~~V~L~k~~~-~~~~gi~~~----~gi~V~~V~~g~~~~~~a~-~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~  270 (627)
                      ...+.|.+.+... ++||.+..+    .++||.+|.+|+   +|++ .++|++||+|++|||+++.++++++++++|+++
T Consensus         7 ~~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~---~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~   83 (106)
T d2cs5a1           7 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGT---PADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   83 (106)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSS---TTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             CcEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCC---cchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3456777877543 355555543    379999999883   4555 579999999999999999999999999999864


Q ss_pred             ----CCeEEEEEEeC
Q psy9827         271 ----KEKLSLTIRRE  281 (627)
Q Consensus       271 ----~~~v~l~V~r~  281 (627)
                          ...+.|+|.|.
T Consensus        84 ~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          84 CERHSGELMLLVRPN   98 (106)
T ss_dssp             HHCCSSCEEEEEECC
T ss_pred             CCCCCcEEEEEECCC
Confidence                34688888764

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.3e-09  Score=94.98  Aligned_cols=85  Identities=16%  Similarity=0.255  Sum_probs=68.5

Q ss_pred             CccEEEEEeecCCCCCeeeeeC-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCe
Q psy9827         197 PQTLRVQLSKSRKKDDFGIILG-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEK  273 (627)
Q Consensus       197 ~~~~~V~L~k~~~~~~~gi~~~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~  273 (627)
                      ...+.+.|.++..+.+|.+..+ .+++|.+|.++   ++|++.+.|++||+|++|||+++.++++++++++|+.+  +..
T Consensus        26 ~~~~~v~l~~g~~GlG~~i~~~~~~i~V~~v~~g---g~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~  102 (126)
T d1wifa_          26 NKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINK---GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV  102 (126)
T ss_dssp             CCEEEEEEECCTTCCCCCEEEETTEEEECCCCTT---SSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCE
T ss_pred             CcEEEEEEeeCCCcEEEEEEecCCcEEEEEECCC---ChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCE
Confidence            4567888888765544444433 56999999988   45666677999999999999999999999999999985  469


Q ss_pred             EEEEEEeCCCC
Q psy9827         274 LSLTIRREVPR  284 (627)
Q Consensus       274 v~l~V~r~~~~  284 (627)
                      |+|+|.|+...
T Consensus       103 v~L~v~R~~~~  113 (126)
T d1wifa_         103 LQIKAYRGFLE  113 (126)
T ss_dssp             EEEEEESSSSC
T ss_pred             EEEEEEeCCCC
Confidence            99999997544

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=6e-10  Score=93.98  Aligned_cols=79  Identities=23%  Similarity=0.336  Sum_probs=64.0

Q ss_pred             cEEEEEeecCCCCCeeeee--C----------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHH
Q psy9827         199 TLRVQLSKSRKKDDFGIIL--G----------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKL  266 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~--~----------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~  266 (627)
                      ..+|+|.|.. ..+|||.+  +          .++||.+|.+|+    +| .++|++||+|++|||+++.++++++++++
T Consensus         8 ~~tV~l~k~~-~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs----~A-~~~L~~GD~Il~INg~~v~~~~~~ev~~l   81 (104)
T d2csja1           8 QYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGG----PA-DGLLQENDRVVMVNGTPMEDVLHSFAVQQ   81 (104)
T ss_dssp             EEEEEEECCS-SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTS----SH-HHHBCTTCEEEEESSCBCBTCCHHHHHHH
T ss_pred             cEEEEEEeCC-CCCcCEEEEcccCCCccccCCCCEEEEEECCCC----hh-hcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4577888753 33455554  2          369999999884    33 37899999999999999999999999999


Q ss_pred             HHcCCCeEEEEEEeCCC
Q psy9827         267 IDSSKEKLSLTIRREVP  283 (627)
Q Consensus       267 l~~~~~~v~l~V~r~~~  283 (627)
                      |++++..++|+|.|...
T Consensus        82 l~~~~~~v~l~V~R~~~   98 (104)
T d2csja1          82 LRKSGKIAAIVVKRPRK   98 (104)
T ss_dssp             HHHSCSEEEEEEEEEEE
T ss_pred             HHcCCCEEEEEEEeCCC
Confidence            99999999999998644

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=8.1e-10  Score=95.20  Aligned_cols=81  Identities=19%  Similarity=0.246  Sum_probs=66.2

Q ss_pred             cEEEEEeecCCCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC---
Q psy9827         199 TLRVQLSKSRKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS---  270 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~---  270 (627)
                      .+.+...+...++||++.++     .+++|.+|.++   +.|++++.|++||+|++|||+++.++++++++.+|+++   
T Consensus        18 ~v~~~~~~~~~~lG~~i~gg~d~~~~~v~I~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~   94 (118)
T d1v6ba_          18 DVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEG---GAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQ   94 (118)
T ss_dssp             CEEEEEEESCSCCCCEEEEBTTSSSCSEEEEECCTT---SHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCCCCCCEEEEeeecCCCCCEEEEEECCC---ChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccC
Confidence            34455555556778888765     27999999988   45666788999999999999999999999999999864   


Q ss_pred             -CCeEEEEEEeCC
Q psy9827         271 -KEKLSLTIRREV  282 (627)
Q Consensus       271 -~~~v~l~V~r~~  282 (627)
                       +..|+|+|.|..
T Consensus        95 ~~~~V~L~v~r~p  107 (118)
T d1v6ba_          95 GGDWIDLVVAVCP  107 (118)
T ss_dssp             TCSEEEEEEECCC
T ss_pred             CCCEEEEEEEeCC
Confidence             568999999864

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=7.8e-10  Score=92.45  Aligned_cols=77  Identities=22%  Similarity=0.357  Sum_probs=63.3

Q ss_pred             EEEEEeecCCCCCeeeee--C-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEE
Q psy9827         200 LRVQLSKSRKKDDFGIIL--G-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL  276 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~--~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l  276 (627)
                      ..|.+.|.. ..+||+++  + .+++|.+|.+|   +.|++.+.|++||+|++|||+++.++++++++++|+++.+.++|
T Consensus        20 ~~V~l~k~~-~~~lG~~v~~~~~~i~I~~V~~g---s~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L   95 (100)
T d1va8a1          20 KIVRIEKAR-DIPLGATVRNEMDSVIISRIVKG---GAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTF   95 (100)
T ss_dssp             EEEEEEECT-TCCCCEEEEECSSSEEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEE
T ss_pred             EEEEEEeCC-CCCccEEEEecCCCEEEEEECCC---ChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEE
Confidence            456677653 34455554  3 58999999988   45566677999999999999999999999999999999999999


Q ss_pred             EEEe
Q psy9827         277 TIRR  280 (627)
Q Consensus       277 ~V~r  280 (627)
                      +|.+
T Consensus        96 ~v~P   99 (100)
T d1va8a1          96 VLIP   99 (100)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9976

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.6e-09  Score=93.43  Aligned_cols=83  Identities=23%  Similarity=0.250  Sum_probs=64.4

Q ss_pred             CccEEEEEeecC-CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         197 PQTLRVQLSKSR-KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       197 ~~~~~V~L~k~~-~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      .....|.|.+.. .++||.+.++    .|+||..|.+|    .+|..++|++||+|++|||+++.++++++++++|+.+ 
T Consensus        19 ~~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g----~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~-   93 (128)
T d1uf1a_          19 GDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPG----SEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS-   93 (128)
T ss_dssp             SSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTT----CHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-
T ss_pred             CCeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCC----ChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-
Confidence            345678888764 3345555543    38999999987    3445557999999999999999999999999999876 


Q ss_pred             CeEEEEEEeCCCC
Q psy9827         272 EKLSLTIRREVPR  284 (627)
Q Consensus       272 ~~v~l~V~r~~~~  284 (627)
                      ..+.|+|.+....
T Consensus        94 ~~v~l~v~~~~~~  106 (128)
T d1uf1a_          94 RHLILTVKDVGRL  106 (128)
T ss_dssp             SEEEEEEECCSCC
T ss_pred             CcEEEEEEECCcC
Confidence            4788999876543

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.2e-09  Score=88.39  Aligned_cols=74  Identities=19%  Similarity=0.344  Sum_probs=56.9

Q ss_pred             EEEeecCC-CCCeeeeeC------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC--
Q psy9827         202 VQLSKSRK-KDDFGIILG------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--  272 (627)
Q Consensus       202 V~L~k~~~-~~~~gi~~~------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~--  272 (627)
                      |.|.|... ++||.+..+      .++||.+|.++   ++|++++.|++||+|++|||+++.+++++++.++|++++.  
T Consensus         2 V~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~g---g~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~   78 (85)
T d1x45a1           2 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHG---GPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQS   78 (85)
T ss_dssp             EEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTT---CHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCS
T ss_pred             eEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCC---CHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            55666532 344444322      37999999988   4566678899999999999999999999999999998765  


Q ss_pred             eEEEEE
Q psy9827         273 KLSLTI  278 (627)
Q Consensus       273 ~v~l~V  278 (627)
                      .++|.|
T Consensus        79 ~v~L~V   84 (85)
T d1x45a1          79 RVKLNI   84 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455554

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.2e-09  Score=94.09  Aligned_cols=62  Identities=16%  Similarity=0.302  Sum_probs=55.9

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  284 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~  284 (627)
                      |+||..|.++   +.|++.+.|++||+|++|||+++.+++++|++++|+++...++|+|.|....
T Consensus        50 gi~I~~V~~g---s~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~~~~  111 (117)
T d1ujda_          50 GAYIAKILPG---GSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             EEEEEEECTT---CHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCCC
T ss_pred             CEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            6999999988   4566677799999999999999999999999999999999999999987654

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=7.1e-11  Score=97.94  Aligned_cols=78  Identities=24%  Similarity=0.337  Sum_probs=63.0

Q ss_pred             cCCceeEEEEcc-----------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827          58 KEGSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI  126 (627)
Q Consensus        58 k~g~lG~~i~g~-----------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~  126 (627)
                      ++|+||+++...           ...|++|..|.++|||+++||++||+|++|||.++.++.+..........++.+.|+
T Consensus         2 ~Rg~lGi~~~~l~~~~~~~~gl~~~~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~~~~~l~~~l~~~~~g~~v~l~   81 (94)
T d1ky9a1           2 KRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLG   81 (94)
T ss_dssp             CBCCCCCSCCCTTSHHHHTSCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEE
T ss_pred             eeeeeeEEEEECCHHHHHHcCCCCCCCcEEEECCCChhHHHhCCCcccEEEEECCEEeCCHHHHHHHHHhCCCCCEEEEE
Confidence            446667666543           135899999999999999999999999999999999998766554444678999999


Q ss_pred             EEeCCcccc
Q psy9827         127 VQNRRDEYE  135 (627)
Q Consensus       127 v~r~~~~~~  135 (627)
                      |.|++..+.
T Consensus        82 v~R~g~~~~   90 (94)
T d1ky9a1          82 LLRDGKQVN   90 (94)
T ss_dssp             EESSSCEEE
T ss_pred             EEECCEEEE
Confidence            999876544

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=1.5e-09  Score=92.76  Aligned_cols=78  Identities=15%  Similarity=0.272  Sum_probs=59.9

Q ss_pred             EEEEEeecC-CCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827         200 LRVQLSKSR-KKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  275 (627)
Q Consensus       200 ~~V~L~k~~-~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~  275 (627)
                      ++|.|.|.. .+.||.+..+   .++||..|.+|   ++|++.+.|++||+|++|||+++.++++++++.+|+.+...+.
T Consensus         3 ~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~g---gpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~   79 (112)
T d1qaua_           3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRG---GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH   79 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSSSSCEEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSE
T ss_pred             EEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCC---CHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcE
Confidence            578888854 2344444433   47999999988   4455556699999999999999999999999999999876655


Q ss_pred             EEEEe
Q psy9827         276 LTIRR  280 (627)
Q Consensus       276 l~V~r  280 (627)
                      +.+.+
T Consensus        80 ~~l~~   84 (112)
T d1qaua_          80 VVLIL   84 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.8e-09  Score=90.35  Aligned_cols=65  Identities=26%  Similarity=0.421  Sum_probs=54.6

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      ..|++|..|.++|||+++||++||+|++|||.++.++.+.  ...+ ..++.+.++|.|++......+
T Consensus        30 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~V~s~~dl--~~~l-~~g~~v~l~v~R~g~~~~~~v   94 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDV--YEAV-RTQSQLAVQIRRGRETLTLYV   94 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHH--HHHH-TTCSSEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEECCCchHhhcCCCCCcEEEEECCEEcCCHHHH--HHHh-cCCCEEEEEEEECCEEEEEEE
Confidence            3589999999999999999999999999999999876543  3334 578999999999887665544

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.1e-09  Score=86.03  Aligned_cols=77  Identities=32%  Similarity=0.442  Sum_probs=61.0

Q ss_pred             cEEEEEeecCCCCCeeeee---CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC-CeE
Q psy9827         199 TLRVQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKL  274 (627)
Q Consensus       199 ~~~V~L~k~~~~~~~gi~~---~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~-~~v  274 (627)
                      +..|.+.|... .+||+.+   ..+++|.+|.+|+    +|..++|++||+|++|||+++.+++++++..+|+++. ..+
T Consensus         3 pr~v~l~k~~~-~~lG~~l~~~~~g~~V~~v~~gs----pA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v   77 (85)
T d1w9ea1           3 PREVILCKDQD-GKIGLRLKSIDNGIFVQLVQANS----PASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKI   77 (85)
T ss_dssp             CEEEEEECCTT-SCCSEEEEEETTEEEEEEECTTS----HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEE
T ss_pred             CEEEEEEeCCC-CCEeEEEEeCCCCEEEEEECCCC----HHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEE
Confidence            35677887643 3455554   3689999999873    4455679999999999999999999999999999865 578


Q ss_pred             EEEEEe
Q psy9827         275 SLTIRR  280 (627)
Q Consensus       275 ~l~V~r  280 (627)
                      +|+|.+
T Consensus        78 ~l~v~~   83 (85)
T d1w9ea1          78 TMTIRD   83 (85)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            888865

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.5e-09  Score=92.05  Aligned_cols=59  Identities=22%  Similarity=0.371  Sum_probs=52.3

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRRE  281 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~  281 (627)
                      |+||.+|.+|   +.|++++.|++||+|++|||+++.+++++|++.+|+++  ...++|+|.|+
T Consensus        48 gi~V~~v~~g---g~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~RP  108 (108)
T d2cssa1          48 GAFITKVKKG---SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRP  108 (108)
T ss_dssp             EEEEEEECTT---SHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEEC
T ss_pred             CEEEEEECCC---CchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeCc
Confidence            7999999988   45666788999999999999999999999999999975  45799998874

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.5e-09  Score=94.68  Aligned_cols=61  Identities=28%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-------CCeEEEEEEeCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-------KEKLSLTIRREVP  283 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-------~~~v~l~V~r~~~  283 (627)
                      ++||..|.+|   +.|++++.|++||+|++|||+++.+++++|++++|+++       ...|+|+|.|...
T Consensus        56 ~i~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~~  123 (127)
T d1wg6a_          56 GIFIKSIIHG---GAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             EEEEEECCSS---SSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred             CEEEEEECCC---CchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeCCC
Confidence            7999999988   56677788999999999999999999999999999975       5689999999643

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.1e-09  Score=91.78  Aligned_cols=81  Identities=25%  Similarity=0.371  Sum_probs=62.5

Q ss_pred             ccEEEEEeecCCCCCeeeee--C----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827         198 QTLRVQLSKSRKKDDFGIIL--G----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK  271 (627)
Q Consensus       198 ~~~~V~L~k~~~~~~~gi~~--~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~  271 (627)
                      ....|.|.+.....+|||.+  +    .++||..|.++    .+|..++|++||+|++|||+++.++++++++++|+.++
T Consensus         8 ~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~g----g~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~   83 (101)
T d1ueza_           8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPG----SLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK   83 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTT----SHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSS
T ss_pred             CEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCC----ChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            44567777765545566655  2    37999999987    34455569999999999999999999999999999875


Q ss_pred             CeEEEEEEeCCC
Q psy9827         272 EKLSLTIRREVP  283 (627)
Q Consensus       272 ~~v~l~V~r~~~  283 (627)
                       .+.|+|.+...
T Consensus        84 -~~~l~V~~~~~   94 (101)
T d1ueza_          84 -KLVLSVYSAGR   94 (101)
T ss_dssp             -SCCEEECCCCC
T ss_pred             -CEEEEEEECCC
Confidence             46677777553

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.3e-09  Score=89.98  Aligned_cols=80  Identities=19%  Similarity=0.240  Sum_probs=62.5

Q ss_pred             EEEEEeecCCCCCeeeeeC-----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC----
Q psy9827         200 LRVQLSKSRKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS----  270 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~~-----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~----  270 (627)
                      ..|.+.|...+++|.+..+     .+++|..|.++   ++|++++.|++||+|++|||+++.+++++|++.+|+++    
T Consensus         8 ~vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~   84 (103)
T d1ufxa_           8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRG---GSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTK   84 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTT---SHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCS
T ss_pred             EEEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCC---cchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCC
Confidence            4466666655566666543     25899999988   45666788999999999999999999999999999974    


Q ss_pred             -CCeEEEEEEeCC
Q psy9827         271 -KEKLSLTIRREV  282 (627)
Q Consensus       271 -~~~v~l~V~r~~  282 (627)
                       ...+.|.|.+..
T Consensus        85 ~~~~~~l~v~~~~   97 (103)
T d1ufxa_          85 DRDYIDFLVTEFN   97 (103)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             ccceEEEEEeCCC
Confidence             356788776643

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.4e-10  Score=95.65  Aligned_cols=69  Identities=22%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA  139 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~  139 (627)
                      ..|++|.+|.++|||+++||++||+|++|||.++.++.+......-...++.+.|++.|++......++
T Consensus        25 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   93 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVT   93 (99)
T ss_dssp             --CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCCCSHHHHHHHHHSCTTCEEEECC-----CCCEEEE
T ss_pred             CCccEEEEecCCCCHHHcCCCcceEEEEECCEecccHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEE
Confidence            358999999999999999999999999999999999887766655567899999999998877665553

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.6e-09  Score=93.81  Aligned_cols=80  Identities=19%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      ....|+|.+.. .++||.+..+        .++||.+|.++   ++|++++.|++||+|++|||+++.+++++|++++|+
T Consensus        15 ~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~g---g~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk   91 (122)
T d1v5qa_          15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEAD---SPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR   91 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTT---SHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHH
T ss_pred             eeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCC---CHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHH
Confidence            44677787754 3344444433        36999999988   466677889999999999999999999999999999


Q ss_pred             cCCCeEEEEEEe
Q psy9827         269 SSKEKLSLTIRR  280 (627)
Q Consensus       269 ~~~~~v~l~V~r  280 (627)
                      .+...+.|++.+
T Consensus        92 ~~~~~~~l~l~~  103 (122)
T d1v5qa_          92 DSSITSKVTLEI  103 (122)
T ss_dssp             HHTTTTCEEEEE
T ss_pred             cCCCceEEEEEE
Confidence            876554444433

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.3e-09  Score=88.96  Aligned_cols=70  Identities=30%  Similarity=0.458  Sum_probs=56.1

Q ss_pred             eEEEEc-cCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccc
Q psy9827          63 GIRLTG-GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY  134 (627)
Q Consensus        63 G~~i~g-~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~  134 (627)
                      |+.+.. ....|++|..|.|||||+++||++||+|++|||.++.++  .++...+...+..+.|+|.|+...+
T Consensus        15 g~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~~~~~   85 (88)
T d1ky9b2          15 GAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRGDSTI   85 (88)
T ss_dssp             --CBCCCTTTSCCCBCCCCSSCTTGGGTCCSSCEEEEETTEECSSH--HHHHHHTTTCCSCCCEEEESSSCEE
T ss_pred             EEEEeecCCCCeEEEEEECCCCHHHHcCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCEEEEEEEECCEEE
Confidence            444433 235689999999999999999999999999999999865  4556667788889999999877654

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.6e-09  Score=86.15  Aligned_cols=80  Identities=21%  Similarity=0.233  Sum_probs=61.4

Q ss_pred             ccEEEEEeecC-CCCCeeeeeC--------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827         198 QTLRVQLSKSR-KKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID  268 (627)
Q Consensus       198 ~~~~V~L~k~~-~~~~~gi~~~--------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~  268 (627)
                      ....|.|.+.. .++||.+.++        .+++|+.|.++   ++|++++.|++||+|++|||+++.++++++++++|+
T Consensus         8 e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~---s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr   84 (99)
T d1x5ra1           8 ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPD---SPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLR   84 (99)
T ss_dssp             EEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTT---SHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHH
T ss_pred             eeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34567787754 3445555432        37999999988   456667889999999999999999999999999999


Q ss_pred             cCC--CeEEEEEEe
Q psy9827         269 SSK--EKLSLTIRR  280 (627)
Q Consensus       269 ~~~--~~v~l~V~r  280 (627)
                      ++.  ..++|.+.+
T Consensus        85 ~~~~~~~l~l~v~~   98 (99)
T d1x5ra1          85 DAALAHKVVLEVEF   98 (99)
T ss_dssp             HHHTTTCEEEEEEE
T ss_pred             hCCCCCEEEEEEEc
Confidence            754  456666654

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.73  E-value=1.9e-08  Score=82.19  Aligned_cols=71  Identities=13%  Similarity=0.133  Sum_probs=57.5

Q ss_pred             CceeEEEEccCCCCEEEEEeCCC--------ChhhhcCC-CCCCEEEEECCEeCCCCCHHHHHHHH-hcCCCeeEEEEEe
Q psy9827          60 GSVGIRLTGGNKVGIFVTAVQPG--------SPASLQGL-QPGDKILKVNDMDMKGITREEAVLFL-LSLQDQIHLIVQN  129 (627)
Q Consensus        60 g~lG~~i~g~~~~gi~V~~V~~g--------spA~~aGL-~~GD~Il~VnG~~v~~~~~~~~~~~l-~~~g~~V~L~v~r  129 (627)
                      |+||+.+.-. +.+..|..|.+|        |||+++|| ++||+|++|||.++.++..  +..++ ...+..|.|+|.|
T Consensus         1 G~lG~d~~~~-~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~~--~~~~l~g~~G~~V~L~i~R   77 (91)
T d1k32a1           1 GRIACDFKLD-GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSN--IYRVLSEKAGTSARIRLSG   77 (91)
T ss_dssp             CBCSEEEEEE-TTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTBC--HHHHHHTTTTSEEEEEEEC
T ss_pred             CcccEEEEEE-CCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcce--eEEEEecCCCCEEEEEEEe
Confidence            4678776654 347899999988        99999998 8999999999999998764  33444 4789999999998


Q ss_pred             CCcc
Q psy9827         130 RRDE  133 (627)
Q Consensus       130 ~~~~  133 (627)
                      .+..
T Consensus        78 ~g~~   81 (91)
T d1k32a1          78 KGGD   81 (91)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            6544

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.7e-08  Score=87.70  Aligned_cols=80  Identities=24%  Similarity=0.397  Sum_probs=61.1

Q ss_pred             EEEEEeecCCCCCeeeee--C------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-
Q psy9827         200 LRVQLSKSRKKDDFGIIL--G------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-  270 (627)
Q Consensus       200 ~~V~L~k~~~~~~~gi~~--~------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-  270 (627)
                      ..|.|.|.....+|||.+  +      .|+||.+|.+|   ++|++++.|++||+|++|||.++.  ++.++..+|+.+ 
T Consensus        21 ~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~g---g~A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~l~~~~   95 (124)
T d1wh1a_          21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPN---SIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEE   95 (124)
T ss_dssp             CCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSS---SHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSS
T ss_pred             EEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCC---ChhhhhcccCCCCEEEEECCEECC--CHHHHHHHHhhCC
Confidence            456677754444445444  2      37999999988   466677889999999999999998  788899988875 


Q ss_pred             CCeEEEEEEeCCCC
Q psy9827         271 KEKLSLTIRREVPR  284 (627)
Q Consensus       271 ~~~v~l~V~r~~~~  284 (627)
                      ...+.|+|.|....
T Consensus        96 ~~~v~l~v~r~~~~  109 (124)
T d1wh1a_          96 NKNFSLLIARPELQ  109 (124)
T ss_dssp             CCSCCEEEEECSSC
T ss_pred             CCcEEEEEEeCCCc
Confidence            56899999885443

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.63  E-value=1.7e-08  Score=81.86  Aligned_cols=68  Identities=16%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV  138 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v  138 (627)
                      ..|..|..+.++|+|+++||++||+|++|||.++.+..+..........++.++|+|.|++......+
T Consensus        18 ~~G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~~~~~~~~~~~~~~~~~~~l~v~R~g~~~~i~v   85 (87)
T d2i6va1          18 VLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYI   85 (87)
T ss_dssp             EEEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEecCCCCCHHHHCCCCCCCEEEEECCEEeecHHHHHHHHHhhccccccEEEEEECCEEEEEEE
Confidence            45788999999999999999999999999999999887766655555789999999999887655443

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.63  E-value=2.8e-08  Score=81.51  Aligned_cols=61  Identities=13%  Similarity=0.304  Sum_probs=52.9

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~  283 (627)
                      .+++|..|.++    ++|..+||++||+|++|||.++.++++++++.+|+. .+..++|+|.|++.
T Consensus        19 ~~v~V~~v~~g----sPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3          19 KDVVVLTPAPG----GPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             SCEEEEEECTT----SHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             ceEEEEEecCC----CChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            36899999876    456668899999999999999999999999999985 55689999999653

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.57  E-value=3e-08  Score=83.06  Aligned_cols=61  Identities=31%  Similarity=0.404  Sum_probs=50.6

Q ss_pred             CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827          71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD  132 (627)
Q Consensus        71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~  132 (627)
                      ..|++|..|.+||||+++ |++||+|++|||..+.++.+.........+|+.|+|++.|+..
T Consensus         2 p~Gv~V~~V~~~sPA~~~-L~~GD~I~~ing~~v~~~~~l~~~i~~~~~G~~v~l~v~R~~~   62 (103)
T d2hgaa1           2 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGTF   62 (103)
T ss_dssp             CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEETTEEE
T ss_pred             CCcEEEEEECCCChHHhc-CCCCCEEEEECCEEcCCHHHHHHHHhhCCCCCEEEEEEEECCE
Confidence            358999999999999875 9999999999999999776555444444679999999988653

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.40  E-value=9.9e-07  Score=78.97  Aligned_cols=86  Identities=12%  Similarity=-0.001  Sum_probs=59.1

Q ss_pred             hHHhCCCcEEEecC-----CceeccccCCCCceeEEEEcCCCcccC----CCCCHHH---HHHHHHHHHHHHHHhc-Ccc
Q psy9827         512 DSMYQGKDSMYQGK-----ESMYQGKDSMYQGKDSMYQGKDSMYQG----KDIKKEV---KIKLFEQSQKLEKVWS-HVF  578 (627)
Q Consensus       512 ~v~~~gk~ciLdi~-----~~l~~~~~~~~P~~~vIFI~ppsl~~~----~~~~e~~---~~~~~~~~~~~e~~~~-~~f  578 (627)
                      +...+.+-|+||.|     ..|  ....+.||  +|||+-.|.+-+    |...+++   .-..+-.+.++.|... +.|
T Consensus       102 elar~lqLvvLD~dtInhP~ql--~ktsLaPI--ivyikiss~kVLqrLIKsrGksq~k~~nvq~vaa~kl~Qc~p~e~f  177 (219)
T d1t0hb_         102 ELARTLQLVVLDADTINHPAQL--SKTSLAPI--IVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPQESF  177 (219)
T ss_dssp             HHHTTCCEEEEEETTCCSGGGT--TTSSCCCE--EEEECCSCHHHHHHHHHHC------CHHHHHHHHHHHHTSCHHHHC
T ss_pred             HHhhcccEEEeccCccCCHHHh--cccCCcce--EEEEEeCcHHHHHHHHHhcChhhhhcccHHHHHHHHHhccCchhcc
Confidence            34557999999999     344  22389999  999999984433    2111222   2233444556665533 689


Q ss_pred             cEEEECCCHHHHHHHHHHHHHhh
Q psy9827         579 TGTITLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       579 d~vi~n~~l~~~~~~l~~~i~~~  601 (627)
                      |.|+.-+.|++||+.|-+.++..
T Consensus       178 D~iLden~Le~Acehla~yLE~Y  200 (219)
T d1t0hb_         178 DVILDENQLEDACEHLADYLEAY  200 (219)
T ss_dssp             SEEECCSSHHHHHHHHHHHHHHH
T ss_pred             ceeecccchHHHHHHHHHHHHHH
Confidence            99999889999999999999864

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1e-07  Score=77.30  Aligned_cols=59  Identities=27%  Similarity=0.443  Sum_probs=52.7

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +.+++..++++.++.+.|+|.|++.
T Consensus        25 ~Gv~V~~V~~~----spA~~aGl~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~   83 (88)
T d1ky9b2          25 QGVVVNNVKTG----TPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDS   83 (88)
T ss_dssp             SCCCBCCCCSS----CTTGGGTCCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSC
T ss_pred             CeEEEEEECCC----CHHHHcCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCE
Confidence            47899999887    56667899999999999999998  8999999999988899999999764

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=1.7e-06  Score=69.88  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=49.2

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  282 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~  282 (627)
                      .|++|.+|.++    ++|..+||++||+|++|||+++.  +..++...+..  .+..+.|+|.|..
T Consensus        16 ~Gv~V~~V~~~----spA~~aGl~~GD~I~~ing~~i~--~~~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1          16 LGAKIVEVVAG----GAAANAGVPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             CSEEEEEECTT----STTGGGTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CcEEEEEECCC----CHHHHcCCCCCCEEEEeCCCcCC--cHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            48999999987    45667889999999999999998  78888888875  3579999999853

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.6e-06  Score=71.78  Aligned_cols=58  Identities=19%  Similarity=0.375  Sum_probs=51.2

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  283 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~  283 (627)
                      .|++|..|.++    ++|..+||++||+|++|||+++.  +.+++.+.++ .++.+.+.|.|++.
T Consensus        31 ~Gv~V~~V~~~----spA~~aGl~~GDiI~~ing~~V~--s~~dl~~~l~-~g~~v~l~v~R~g~   88 (100)
T d1lcya1          31 HGVLIHKVILG----SPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVR-TQSQLAVQIRRGRE   88 (100)
T ss_dssp             SCEEEEEECTT----SHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHT-TCSSEEEEEEETTE
T ss_pred             CcEEEEEECCC----chHhhcCCCCCcEEEEECCEEcC--CHHHHHHHhc-CCCEEEEEEEECCE
Confidence            58899999886    56777899999999999999999  8999999985 67789999999865

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=7.1e-07  Score=73.13  Aligned_cols=65  Identities=23%  Similarity=0.348  Sum_probs=54.3

Q ss_pred             eeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827         213 FGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  283 (627)
Q Consensus       213 ~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~  283 (627)
                      ||+....|++|..|.++    ++|..+||++||+|++|||+++.  +.+++..++..  .++.+.|.|.|++.
T Consensus        21 ~gl~~~~Gv~V~~V~~~----spA~~aGl~~gDvI~~i~g~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          21 MKVDAQRGAFVSQVLPN----SSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             SCCTTCCSEECCCCTTC----SSSTTTTCCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             cCCCCCCCcEEEECCCC----hhHHHhCCCcccEEEEECCEEeC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            44444468999999876    56777899999999999999999  88999999876  45789999999764

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=9.9e-07  Score=72.97  Aligned_cols=67  Identities=18%  Similarity=0.264  Sum_probs=46.8

Q ss_pred             CeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCCC
Q psy9827         212 DFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPR  284 (627)
Q Consensus       212 ~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~~  284 (627)
                      .+|+....|++|.+|.++    ++|..+||++||+|++|||+++.  +..++...+.+  .++.+.|+|.|++..
T Consensus        19 ~~gl~~~~Gv~V~~V~~~----spA~~aGl~~GDiI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~   87 (99)
T d1sota1          19 GGGIDQLQGIVVNEVSPD----GPAANAGIQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQ   87 (99)
T ss_dssp             --------CEECCCCCSS----STTTSSSCCTTCEECBSSSSBCC--CSHHHHHHHHHSCTTCEEEECC-----C
T ss_pred             HcCCCCCCccEEEEecCC----CCHHHcCCCcceEEEEECCEecc--cHHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            456665678999999876    56778899999999999999999  78888888865  457899999998754

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.99  E-value=4.7e-06  Score=69.24  Aligned_cols=57  Identities=18%  Similarity=0.257  Sum_probs=48.8

Q ss_pred             CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy9827         219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  282 (627)
Q Consensus       219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~  282 (627)
                      .|++|..|.+++    +|..+ |++||+|++|||+.+.  +.+++...|..  .++.++|.|.|+.
T Consensus         3 ~Gv~V~~V~~~s----PA~~~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           3 DGVQIDSVVPGS----PASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCEEEEEECSSS----GGGGT-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CcEEEEEECCCC----hHHhc-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECC
Confidence            478999999873    44455 9999999999999999  99999999986  3678999998864

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.97  E-value=6.9e-06  Score=66.50  Aligned_cols=64  Identities=6%  Similarity=0.077  Sum_probs=51.5

Q ss_pred             CCcEEEEEeccCCCC----CCCCCCCCC-CCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827         218 GNKIFVKEVTHRLDN----NASPGTHQL-AEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP  283 (627)
Q Consensus       218 ~~gi~V~~V~~g~~~----~~~a~~~~L-~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~  283 (627)
                      +.++.|.+|.+|.++    .++|..+|| ++||+|++|||+++.  +..++.++|+. .+..|.|+|.|.+.
T Consensus        11 ~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~--~~~~~~~~l~g~~G~~V~L~i~R~g~   80 (91)
T d1k32a1          11 GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVG--AGSNIYRVLSEKAGTSARIRLSGKGG   80 (91)
T ss_dssp             TTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECB--TTBCHHHHHHTTTTSEEEEEEECSSS
T ss_pred             CCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeec--CcceeEEEEecCCCCEEEEEEEeCCC
Confidence            357889999988433    256667788 899999999999998  56688899987 55699999999654

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.81  E-value=8.8e-06  Score=65.32  Aligned_cols=59  Identities=19%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCCC
Q psy9827         220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPR  284 (627)
Q Consensus       220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~~  284 (627)
                      |+.|..+.++    +++..+||++||+|++|||+++.  +.+++..++..  .+..+++.|.|++..
T Consensus        20 G~~v~~v~~~----s~~~~aGl~~GDiI~~ing~~v~--~~~~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          20 GYRVSPGKDP----VLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEECSCH----HHHHHTTCCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEecCCCC----CHHHHCCCCCCCEEEEECCEEee--cHHHHHHHHHhhccccccEEEEEECCEE
Confidence            5667777654    67778999999999999999999  89999999986  567999999997653

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=8.3e-06  Score=59.86  Aligned_cols=53  Identities=11%  Similarity=0.097  Sum_probs=38.7

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      -||||+++|.+   .++     -++.|.+||++.| +++.|.    .||+++..  +   .+.|++|+...
T Consensus         2 ~~v~Alydy~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~--~---g~~G~vP~~yv   54 (57)
T d1ckaa_           2 EYVRALFDFNG---NDE-----EDLPFKKGDILRI-RDKPEE----QWWNAEDS--E---GKRGMIPVPYV   54 (57)
T ss_dssp             CEEEESSCBCC---SST-----TBCCBCTTCEEEE-EECSSS----SEEEEECT--T---SCEEEEEGGGE
T ss_pred             CEEEECCCCCc---CCc-----CCcCCCCCCEEEE-EEEcCC----CeEEEEEC--C---CCEEEEcHHHe
Confidence            38999999943   322     2457789999999 666664    89999643  2   37899999754

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=5.6e-05  Score=58.48  Aligned_cols=60  Identities=10%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...++||+++|   .+.++     -++.|..||++.| +.+.+.    .||.++.........+.|+||+...
T Consensus         6 ~g~~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-l~~~~~----~Ww~v~~~~~~~~~g~~G~vP~~yv   65 (74)
T d1wfwa_           6 SGSTMTVIKDY---YALKE-----NEICVSQGEVVQV-LAVNQQ----NMCLVYQPASDHSPAAEGWVPGSIL   65 (74)
T ss_dssp             CSCEEECCSCB---CCCSS-----SCCCBCTTCEEEE-EEECTT----SEEEEEECSCSSSSSEEEEEEGGGC
T ss_pred             CCCEEEEeEEE---CCCCC-----CCccCccCCEEEE-EEEcCC----CCEEEEeCccCCcCCeeeEEchHHe
Confidence            45688999999   33322     2557779999999 766554    8999987654333358999999864

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00019  Score=55.65  Aligned_cols=55  Identities=13%  Similarity=0.024  Sum_probs=40.3

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      +..+.|||+|+|   .+.++     -++.|.+||++.| +.+.|.    .||.+..   +   .+.|++|+...
T Consensus         8 ~~~~~~rAlydy---~a~~~-----~eLs~~~Gd~i~v-~~~~~~----~W~~g~~---~---g~~G~~P~~yv   62 (76)
T d1ujya_           8 SHQLIVKARFNF---KQTNE-----DELSVCKGDIIYV-TRVEEG----GWWEGTL---N---GRTGWFPSNYV   62 (76)
T ss_dssp             CCCEEEECCSCB---CCSST-----TSCCBCSSCCEEE-SSCCSS----SCEEEEE---T---TEEEEECTTTS
T ss_pred             CCCEEEEECccC---CCCCC-----CCccCCCCCEEEE-eEEcCC----CEEEEEE---C---CcEEEEchHHE
Confidence            346789999999   33332     2567889999999 666554    7999954   2   37899999864

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00025  Score=53.51  Aligned_cols=55  Identities=13%  Similarity=-0.057  Sum_probs=39.2

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+|+|+++|   .+.++     -++.|..||++.| +.+.|.    .||.++..  +   .+.|++|+...
T Consensus         7 ~~~~v~Alydy---~a~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~--~---g~~G~vP~~yv   61 (67)
T d1awwa_           7 ELKKVVALYDY---MPMNA-----NDLQLRKGDEYFI-LEESNL----PWWRARDK--N---GQEGYIPSNYV   61 (67)
T ss_dssp             CCCEEEBSSCC---CCSSS-----SSCCCCSSCEEEC-CCCCSS----SEECCBCT--T---SCBCCEETTTB
T ss_pred             CCEEEEECcCC---CCCCc-----CCcCCCCCCEEEE-EEEcCC----CeEEEEEC--C---CCEEEEcHHHe
Confidence            34568999999   33332     2567889999999 666554    79998642  3   37899999754

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=97.01  E-value=9.3e-05  Score=53.15  Aligned_cols=51  Identities=10%  Similarity=-0.057  Sum_probs=35.5

Q ss_pred             eCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         316 VQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       316 vra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      |.|+++|   .+.++     -++.|.+||++.| +.+.|.    .||.++..  +   .+.|+||+...
T Consensus         1 V~Alydy---~a~~~-----~eLs~~~Gd~~~v-l~~~~~----~Ww~~~~~--~---g~~G~vP~~yv   51 (53)
T d2rn8a1           1 VIALYDY---QTNDP-----QELALRCDEEYYL-LDSSEI----HWWRVQDK--N---GHEGYAPSSYL   51 (53)
T ss_dssp             EEESSCC---CCSST-----TBCCCCTTCEEEE-CCCSCS----SCEEEECT--T---SCEEEECGGGE
T ss_pred             CEEeeeE---CCCCC-----CeeeECCCCEEEE-eEEcCC----CeEEEEeC--C---CCEEEEeHHHE
Confidence            5677888   33221     3567789999999 666654    89999532  2   37899999753

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00012  Score=53.16  Aligned_cols=51  Identities=24%  Similarity=0.216  Sum_probs=37.4

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .||||+++|   .+.++     -++.|.+||++.| +.+.+.    .||.++.   +   .+.|++|+..
T Consensus         2 tyv~Alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~W~~g~~---~---g~~G~~P~~y   52 (56)
T d1gcqa_           2 TYVQALFDF---DPQED-----GELGFRRGDFIHV-MDNSDP----NWWKGAC---H---GQTGMFPRNY   52 (56)
T ss_dssp             EEEEESSCB---CCCST-----TBCCBCTTCEEEE-EECCSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             EEEEECcCC---CcCCc-----CCcCCCCCCEEEE-EEecCC----CEEEEEE---C---CeEEEEEHhH
Confidence            589999999   33322     2567889999999 554443    7999865   2   3799999974

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00027  Score=53.99  Aligned_cols=55  Identities=7%  Similarity=-0.076  Sum_probs=39.6

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..++|||+|+|   .+.++     -++.|.+||++.| +.+.|.    .||.++..+     ...|++|+...
T Consensus         5 ~~~~v~Aly~f---~a~~~-----~eLsf~~Gd~i~v-~~~~~~----~Ww~g~~~~-----~~~G~fP~~yv   59 (71)
T d2hspa_           5 FKCAVKALFDY---KAQRE-----DELTFIKSAIIQN-VEKQEG----GWWRGDYGG-----KKQLWFPSNYV   59 (71)
T ss_dssp             SSSCEECCSCC---CCSSS-----SSCCCCTTCEEBS-CCCBTT----TEECCBCSS-----CCSCCEETTTC
T ss_pred             CcEEEEEcccC---CcCCc-----CCccCCCCCEEEE-EEecCC----CEEEEEECC-----eEEEEEchHHe
Confidence            46789999999   33332     2567889999999 766665    899996422     35589999754

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00016  Score=52.98  Aligned_cols=52  Identities=13%  Similarity=0.026  Sum_probs=37.9

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      |+||+++|   .+.++     -++.|..||++.| +.+.|.    .||.+.... +   .+.|++|+..
T Consensus         2 ~~~Alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~~-~---g~~G~~P~~y   53 (58)
T d1jo8a_           2 WATAEYDY---DAAED-----NELTFVENDKIIN-IEFVDD----DWWLGELEK-D---GSKGLFPSNY   53 (58)
T ss_dssp             CEEESSCB---CCCST-----TBCCBCTTCEEEE-EECCSS----SEEEEEETT-T---CCEEEEEGGG
T ss_pred             EEEEccCC---CCCCc-----CCcCCCCCCEEEE-EEEcCC----CEEEEEECC-C---CCEEEEchHH
Confidence            78999999   33332     2567889999999 666665    799987543 3   3789999864

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00019  Score=52.68  Aligned_cols=50  Identities=12%  Similarity=0.169  Sum_probs=36.7

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      |++|.++|   .+.++     -++.|..||++.| +..+|     .||.++..+     .+.|++|+..
T Consensus         3 ~a~alydf---~a~~~-----~ELs~~~Gd~i~v-~~~~~-----~ww~~~~~~-----g~~G~~P~ny   52 (59)
T d1i07a_           3 YAKSKYDF---VARNS-----SELSVMKDDVLEI-LDDRR-----QWWKVRNAS-----GDSGFVPNNI   52 (59)
T ss_dssp             EEEESSCB---CCSST-----TBCCBCTTCEEEE-CGGGC-----CEEEEECTT-----SCEEEEEGGG
T ss_pred             EEEEccCC---CCCCC-----CeeeEcCCCEEEE-EEEcC-----CcEEEEEcC-----CCEEEECHHH
Confidence            78889999   33332     2567789999999 66665     699986542     3789999974

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00029  Score=51.31  Aligned_cols=52  Identities=15%  Similarity=0.160  Sum_probs=37.4

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      +|| |+++|   .+.++     .++.|.+||++.| +.+++.    .||.++... +   .+.|++|+..
T Consensus         2 l~v-Al~dy---~a~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~~-~---g~~G~vP~~y   53 (57)
T d1efna_           2 LFV-ALYDY---EAITE-----DDLSFHKGEKFQI-LNSSEG----DWWEARSLT-T---GETGYIPSNY   53 (57)
T ss_dssp             EEE-ESSCB---CCSST-----TBCCBCTTCEEEE-EECSSC----SEEEEEETT-T---TEEEEEEGGG
T ss_pred             EEE-ECCCC---CCCCc-----CCcCCCCCCEEEE-EEecCC----CCEEEEECC-C---CCEEEEeHHH
Confidence            566 88888   33222     3567889999999 666654    799997653 2   4889999864

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00025  Score=51.66  Aligned_cols=50  Identities=14%  Similarity=0.151  Sum_probs=37.3

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      |+||+++|.+   .++     -++.|.+||++.| +.+.|.    .||.++.   +   .+.|++|+..
T Consensus         3 yarAlydy~~---~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~g~~---~---g~~G~~P~~y   52 (57)
T d1utia_           3 WARALYDFEA---LEE-----DELGFRSGEVVEV-LDSSNP----SWWTGRL---H---NKLGLFPANY   52 (57)
T ss_dssp             EEEESSCBCC---CST-----TBCCBCTTCEEEE-EECCSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             EEEECcCCCC---CCc-----CCcCCCCCCEEEE-eEEcCC----CEEEEEE---C---CcEEEEEHHH
Confidence            8899999944   222     2567889999999 666664    7999964   2   3889999974

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=96.71  E-value=0.0003  Score=51.39  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=38.2

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ..|+||+++|   .+.++     -++.|.+||++.| +...|.    .||.++.   +   .+.|++|+..
T Consensus         2 ~~~~~Alydy---~~~~~-----~eLsf~~Gd~i~v-~~~~~~----~W~~g~~---~---g~~G~~P~~y   53 (58)
T d1sema_           2 TKFVQALFDF---NPQES-----GELAFKRGDVITL-INKDDP----NWWEGQL---N---NRRGIFPSNY   53 (58)
T ss_dssp             CCEEEESSCB---CCSST-----TBCCBCTTCEEEE-EECSSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             CEEEEECCCC---CcCCc-----CCcCCCCCCEEEE-eEEcCC----CEEEEEE---C---CeEEEEEhhh
Confidence            4589999999   33322     2567889999999 665554    7999964   2   3899999864

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00023  Score=53.69  Aligned_cols=58  Identities=14%  Similarity=0.012  Sum_probs=39.3

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCC-CcCccccccCCCCccceeeeccChh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVS-PINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~-~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .-|+||+++|   .+.+++    .++.|.+||++.| +.+.|.... ..||.++..  +   .+.|++|+..
T Consensus         5 ~~~~~Alydy---~~~~~~----~ELs~~~Gd~i~v-l~~~d~~~~~~~Ww~g~~~--~---G~~G~~P~ny   63 (67)
T d2v1ra1           5 LEFARALYDF---VPENPE----MEVALKKGDLMAI-LSKKDPLGRDSDWWKVRTK--N---GNIGYIPYNY   63 (67)
T ss_dssp             CEEEEESSCB---CCSSTT----TBCCBCTTCEEEE-EEEECTTSCEEEEEEEECT--T---SCEEEEEGGG
T ss_pred             CEEEEECccC---CCCCCC----CEeCCCCCCEEEE-EEeecCCCcCCCeEEEEeC--C---CCEEEEEHHH
Confidence            3479999999   332211    2567889999999 766553222 269999642  2   3789999974

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00031  Score=52.06  Aligned_cols=53  Identities=15%  Similarity=0.050  Sum_probs=38.5

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+|+|+++|.+   .++     -++.|.+||++.| +...|.    .||.++.   +   .+.|++|+...
T Consensus         5 g~~v~Aly~y~a---~~~-----~eLsf~~Gd~i~v-l~~~~~----~Ww~g~~---~---g~~G~~P~~yV   57 (62)
T d1k4us_           5 GSQVEALFSYEA---TQP-----EDLEFQEGDIILV-LSKVNE----EWLEGES---K---GKVGIFPKVFV   57 (62)
T ss_dssp             CEEEECCSCBCC---CSS-----SBCCBCSSCEEEE-EEESSS----SCEEEEC---S---SCEEEECGGGC
T ss_pred             CCEEEECCCCCC---CCc-----CCcCCCCCCEEEE-eEEcCC----CEEEEEE---C---CcEEEEchHHe
Confidence            457899999933   222     2567889999999 665554    7999964   2   37999999754

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00053  Score=53.54  Aligned_cols=59  Identities=14%  Similarity=0.017  Sum_probs=42.3

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...++||+++|   .+.++     -++.|..||++.| +.+.|.    .||.+...+.+ ...+.|++|+...
T Consensus         6 ~g~~~~al~~y---~~~~~-----~eLs~~~Gd~i~V-l~~~~~----~Ww~g~~~~~~-~~~~~G~~P~~yv   64 (80)
T d1ue9a_           6 SGEIAQVTSAY---VASGS-----EQLSLAPGQLILI-LKKNTS----GWWQGELQARG-KKRQKGWFPASHV   64 (80)
T ss_dssp             CCEEEEECSCC---CCCST-----TBCCCCTTCEEEE-EEECSS----SEEEEEECSCC-SSCCEEEEETTSE
T ss_pred             CCCEEEECcCC---CCCCC-----CEeeEcCCCEEEE-EEEeCC----CeEEEEEccCC-CCCCEeEEEheeE
Confidence            34689999999   43332     3678889999999 666654    89998754332 2357899999753

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00043  Score=53.23  Aligned_cols=54  Identities=19%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+.+||+++|   .+.++     -++.|..||++.| +.++|     .||....   +   .+.|++|+...
T Consensus         8 ~~~~~~~alydy---~a~~~-----~ELs~~~Gd~i~v-l~~~~-----~ww~g~~---~---g~~G~fP~~yv   61 (74)
T d1j3ta_           8 VENLKAQALCSW---TAKKD-----NHLNFSKHDIITV-LEQQE-----NWWFGEV---H---GGRGWFPKSYV   61 (74)
T ss_dssp             CCCCEEEESSCB---CCCST-----TBCCBCTTCEEEE-EEECS-----SEEEEES---T---TCCCEEEGGGE
T ss_pred             CCCeEEEEccCC---CCCCC-----CEecCCCCCEEEE-EEccC-----CeEEEEE---C---CcEEEEchhhE
Confidence            357789999999   44332     2567889999999 76655     6998754   2   37899999753

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00057  Score=50.21  Aligned_cols=52  Identities=6%  Similarity=-0.064  Sum_probs=37.3

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+||.++|   .+.++     -++.|..||++.| +.+.|.    .||.+.... +   .+.|+||+..
T Consensus         5 ~~rAl~df---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~W~~~~~~~-~---g~~G~vP~ny   56 (60)
T d1arka_           5 IFRAMYDY---MAADA-----DEVSFKDGDAIIN-VQAIDE----GWMYGTVQR-T---GRTGMLPANY   56 (60)
T ss_dssp             CEECCSCC---CCSSS-----SBCCCCTTCEECC-SEECSS----SEEEEECTT-T---CCEEEEETTT
T ss_pred             EEEECccC---CCCCC-----CCcCCCCCCEEEE-EEEcCC----CEEEEEECC-C---CCEEEEcHHH
Confidence            46899999   33322     2567889999999 666554    799986543 2   4789999974

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.001  Score=50.80  Aligned_cols=58  Identities=10%  Similarity=-0.004  Sum_probs=38.0

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ...+|||+++|   .+.+++    -++.|..||++.| +.+.+.   .-||.+... .+   .+.|++|+...
T Consensus         6 ~~~~~~Alydy---~~~~~~----deLsf~~Gd~i~v-l~~~~~---~gW~~g~~~-~~---g~~G~fP~nyV   63 (72)
T d1spka_           6 SGQKVKTIFPH---TAGNNK----TLLSFAQGDVLTL-LIPEEK---DGWLYGEHD-TT---KARGWFPSSYT   63 (72)
T ss_dssp             CSCEEECSSCB---CCSSCS----SBCCBCTTCEEEE-CCSSCB---TTEEEEEET-TT---CCEEEEEGGGC
T ss_pred             CCCEEEEeecc---CCCCCC----CEeeEcCCCEEEE-EEeecC---CCeEEEEEC-CC---CCEEEEchhhE
Confidence            34689999999   443322    1467889999999 544432   137766543 22   47899999753

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0011  Score=51.63  Aligned_cols=57  Identities=18%  Similarity=0.009  Sum_probs=39.8

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..++||+++|.+   .++     -++.|.+||++.| +.+.|......||.++.   +   .+.|++|+...
T Consensus        13 ~~~~~Alydy~a---~~~-----~ELs~~~Gd~i~v-l~~~~~~~~~~W~~g~~---~---g~~G~vP~~yv   69 (79)
T d1uhca_          13 NQVYFAVYTFKA---RNP-----NELSVSANQKLKI-LEFKDVTGNTEWWLAEV---N---GKKGYVPSNYI   69 (79)
T ss_dssp             SCCEEESSCBCC---CSS-----SBCCBCTTCEEEE-EESCCTTSCTTEEEEES---S---SCEEEEEGGGE
T ss_pred             CEEEEECccCCC---CCC-----CCccCCCCCEEEE-EEeecCCCCCCEEEEEE---C---CCEEEEehhhE
Confidence            346789999933   222     2567889999999 76655434457999964   2   36899999754

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0011  Score=53.92  Aligned_cols=53  Identities=15%  Similarity=0.042  Sum_probs=39.4

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+++|+++|   .+.++     -|+.|..||++.| +.+.|.    .||.++.   +   .+.|++|+...
T Consensus        34 ~~~~~Alydy---~a~~~-----~ELsf~~Gd~i~V-l~~~~~----gWw~g~~---~---g~~G~~P~nyV   86 (98)
T d1udla_          34 VCQVIAMYDY---AANNE-----DELSFSKGQLINV-MNKDDP----DWWQGEI---N---GVTGLFPSNYV   86 (98)
T ss_dssp             SEEEEESSCC---CCSST-----TSCCCCTTCEEEE-CBCCSS----SEEBCBS---S---SCBCCEETTSE
T ss_pred             ccEEEEccCC---CCCCC-----CEeeEcCCCEEEE-eEecCC----CeEEEEE---C---CeEEEEchHHE
Confidence            4579999999   44332     2567889999999 766654    8999964   2   37899999754

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.00068  Score=50.99  Aligned_cols=52  Identities=15%  Similarity=-0.038  Sum_probs=37.5

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      +|+|+++|   .+.++     .++.|.+||++.| +.+.+.    .||.++..  +   .+.|++|+...
T Consensus         4 ~v~Alydf---~a~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~--~---g~~G~~P~~yV   55 (67)
T d1gl5a_           4 IVVAMYDF---QATEA-----HDLRLERGQEYII-LEKNDL----HWWRARDK--Y---GSEGYIPSNYV   55 (67)
T ss_dssp             CEEECSCB---CCSSS-----SBCCBCTTCEEEE-EECSSS----SEEEEECS--S---SCEEEEETTSE
T ss_pred             EEEECCCC---CCCCc-----CCcCCCCCCEEEE-EEecCC----CcEEEEEC--C---CCEEEEEhHHe
Confidence            57788998   33322     2567889999999 777665    79999643  2   36799999754

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.31  E-value=0.00071  Score=48.73  Aligned_cols=50  Identities=10%  Similarity=0.072  Sum_probs=35.7

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .|+|.++|   .+.++     -++.|.+||++.| +.+.+.    .||.+++-      .+.|++|+..
T Consensus         2 ~~vAl~dy---~~~~~-----~eLs~~~Gd~v~v-~~~~~~----~Ww~g~~~------g~~G~~P~~y   51 (55)
T d1u06a1           2 LVLALYDY---QEKSP-----REVTMKKGDILTL-LNSTNK----DWWKVEVN------DRQGFVPAAY   51 (55)
T ss_dssp             EEEECSCB---CCCST-----TBCCBCTTCEEEE-EECCSS----SEEEEEET------TEEEEEEGGG
T ss_pred             EEEECCCC---CCCCc-----CCccCCCCCEEEE-eEEcCC----CEEEEEEC------CeEEEEeHHH
Confidence            35678888   33222     2557789999999 666654    89999752      3789999975

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00078  Score=49.98  Aligned_cols=53  Identities=9%  Similarity=-0.011  Sum_probs=36.5

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      -|+|+++|   .+.++     -++.|..||++.| +.++|. ....||.++.   +   .+.|++|+..
T Consensus         6 ~v~Alydy---~a~~~-----~ELs~~~Gd~i~v-l~~~~~-~~~gW~~g~~---~---g~~G~~P~~y   58 (63)
T d1ycsb2           6 VIYALWDY---EPQND-----DELPMKEGDCMTI-IHREDE-DEIEWWWARL---N---DKEGYVPRNL   58 (63)
T ss_dssp             EEEESSCB---CCSST-----TBCCBCSSCEEEE-CCCCTT-SCSSEEEEEE---T---TEEEEEEGGG
T ss_pred             EEEEeeCC---CCCCC-----CCcCCCCCCEEEE-EEecCC-CCCCEEEEEE---C---CeEEEEchHH
Confidence            37789999   33332     2567889999999 665542 1235999964   2   3789999864

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0011  Score=48.32  Aligned_cols=51  Identities=10%  Similarity=0.016  Sum_probs=36.3

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      .+||.++|   .+.++     -++.|.+||++.| +.+.|.    .||.++.-      .+.|++|+...
T Consensus         4 ~~~al~dy---~~~~~-----~eLs~~~Gd~i~v-l~~~~~----~Ww~~~~~------g~~G~~P~~yv   54 (58)
T d1ng2a1           4 TYRAIADY---EKTSG-----SEMALSTGDVVEV-VEKSES----GWWFCQMK------AKRGWIPASFL   54 (58)
T ss_dssp             EEECSSCB---CCSST-----TCCCBCTTCEEEE-EECCTT----SCCEEEEC------CCCCCCCGGGC
T ss_pred             EEEECccC---cCCCC-----CCcCCCCCCEEEE-EEecCC----CeEEEEEC------CCCcEEcHhHE
Confidence            46788998   33222     2567889999999 666664    79988642      36799999753

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.00074  Score=49.19  Aligned_cols=50  Identities=18%  Similarity=0.145  Sum_probs=36.5

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .+||+++|.|   .++     -++.|.+||++.| +.+.|.    .||.++.   +   .+.|++|+..
T Consensus         4 r~~Alydy~~---~~~-----~eLsf~~Gd~i~v-~~~~~~----~W~~g~~---~---g~~G~~P~~y   53 (58)
T d1uj0a_           4 RVRALYDFEA---VED-----NELTFKHGELITV-LDDSDA----NWWQGEN---H---RGTGLFPSNF   53 (58)
T ss_dssp             EEEESSCBCC---CST-----TBCCBCTTCEEEE-EECCSS----SEEEEEE---T---TEEEEEEGGG
T ss_pred             EEEECCCCCC---CCc-----CCcCCCCCCEEEE-eEEeCC----CEEEEEE---C---CeEEEEehHh
Confidence            5789999933   221     2567889999999 666554    7999864   2   3789999975

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0031  Score=47.93  Aligned_cols=53  Identities=11%  Similarity=0.007  Sum_probs=35.8

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCc-CccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPI-NNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~-wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..++||+++|   .+.++     -++.|..||++.| +...+.    . ||....   +   .+.|++|+...
T Consensus        10 ~~~~~alydy---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~~W~~g~~---~---g~~G~~P~~yv   63 (72)
T d1ugva_          10 FRKAKALYAC---KAEHD-----SELSFTAGTVFDN-VHPSQE----PGWLEGTL---N---GKTGLIPENYV   63 (72)
T ss_dssp             CCCEEESSCB---CCCSS-----SBCCBCTTCEEBS-CCBCSS----TTEEEEES---S---SCEEEEEGGGE
T ss_pred             CEEEEEcccC---CCCCC-----CEecCCCCCEEEE-eeccCC----CCEEEEEe---C---CCEEEEchHHE
Confidence            3468999999   43332     2567889999998 554433    4 666643   2   37899999753

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0022  Score=47.73  Aligned_cols=54  Identities=15%  Similarity=0.089  Sum_probs=38.3

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+|.|+++|.+   .++     .++.|.+||++.| +.+++     .||.+.....    .+.|++|+...
T Consensus         4 ~~~vvAlydy~~---~~~-----~eLs~~~Gd~i~v-~~~~~-----~ww~~~~~~~----g~~G~vP~~yv   57 (65)
T d1qcfa1           4 RIIVVALYDYEA---IHH-----EDLSFQKGDQMVV-LEESG-----EWWKARSLAT----RKEGYIPSNYV   57 (65)
T ss_dssp             CCEEEESSCBCC---CST-----TBCCBCTTCEEEE-EECCT-----TEEEEEETTT----CCEEEEEGGGE
T ss_pred             cEEEEECCcCCC---CCc-----CccCCCCCCEEEE-EEECC-----CCEEEEEccC----CCEEEEchHHe
Confidence            356889999933   221     2567889999999 66665     5998866532    37899999754

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0035  Score=47.17  Aligned_cols=51  Identities=10%  Similarity=-0.134  Sum_probs=35.9

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..++|+++|   .+.++     -++.|.+||++.| +..+|     .||.++.   +   .+.|+||+...
T Consensus         9 ~~~vAl~~y---~~~~~-----~eLs~~~Gd~v~v-l~~~~-----~Ww~~~~---~---g~~G~vP~~yv   59 (69)
T d1uhfa_           9 EEYIALYPY---SSVEP-----GDLTFTEGEEILV-TQKDG-----EWWTGSI---G---DRSGIFPSNYV   59 (69)
T ss_dssp             EEEECSSCB---CCSSS-----SBCCBCTTCEEEE-CEEET-----TEEEECS---T---TCCEEECGGGC
T ss_pred             cEEEECccC---CCCCc-----CCcCCCCCCEEEE-EEecC-----CEEEEEE---C---CcEEEEchhhE
Confidence            445688998   33221     2567889999999 66655     6999864   2   37899999753

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0028  Score=45.59  Aligned_cols=52  Identities=4%  Similarity=-0.077  Sum_probs=33.5

Q ss_pred             eCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         316 VQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       316 vra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .||+++|.+   .+     --++.|..||++.| +...|.    .||-..+...+   .+.|++|+..
T Consensus         2 aralydf~a---~~-----~~ELs~~~Gd~i~v-~~~~~~----~~w~~~~~~~~---g~~G~~P~ny   53 (56)
T d1zuua1           2 NKVLYAYVQ---KD-----DDEITITPGDKISL-VARDTG----SGWTKINNDTT---GETGLVPTTY   53 (56)
T ss_dssp             CEECSCBCC---CS-----TTBCCBCTTCCEEE-EECCSS----SSEEEEEETTT---TEEEEEEGGG
T ss_pred             CEEeeeeCC---CC-----CCEeeECCCCEEEE-EEEecC----CCcEEEeCCCC---ceEEEEehhh
Confidence            367888833   22     13567889999998 655543    56544333333   4899999974

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0037  Score=47.32  Aligned_cols=54  Identities=13%  Similarity=0.154  Sum_probs=36.6

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ++||+++|.+   ..+     -++.|..||++.| +...+.  .+.||.++..  +   .+.|++|+...
T Consensus         8 ~~~Alydf~~---~~~-----~eLs~~~Gd~i~v-l~~~~~--~~~Ww~~~~~--~---G~~G~vP~~yv   61 (71)
T d1u5sa1           8 VVQTLYPFSS---VTE-----EELNFEKGETMEV-IEKPEN--DPEWWKCKNA--R---GQVGLVPKNYV   61 (71)
T ss_dssp             EEEESSCCCC---CSS-----SBCCCCSSCCEEE-EECCCT--TTCEEEEEET--T---TEEEEEETTSE
T ss_pred             EEEECccCCC---CCC-----CEeeECCCCEEEE-EEcccC--CCCeEEEEEC--C---CCEEEEChHHE
Confidence            5899999933   221     3567889999998 543221  2369998653  2   37899999743

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.004  Score=50.13  Aligned_cols=60  Identities=17%  Similarity=0.116  Sum_probs=38.1

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCC--CCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhH
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVP--RAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARA  385 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~--~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~  385 (627)
                      .-+++|+|+|   ++.+ ...++.  |+.|..||+|.| +...|.    .||-..... +   .+.|++|+...+
T Consensus        17 ~~~~~Alydy---~~~~-~~~~~~e~ELsf~~Gd~i~v-~~~~~~----~gW~~~~~~-~---G~~G~~P~nyve   78 (96)
T d1wiea_          17 VHLCVARYSY---NPFD-GPNENPEAELPLTAGKYLYV-YGDMDE----DGFYEGELL-D---GQRGLVPSNFVD   78 (96)
T ss_dssp             EEEEEESSCC---CGGG-SSCSCTTTBCCCCTTCEEEE-ESSCCS----SSCCEEEET-T---CCBCBCCTTSEE
T ss_pred             ceEEEEeeee---cCcc-cCCCCCCcEeeEcCCCEEEE-EEeeCC----CceEEEEeC-C---CCEEEEehHHeE
Confidence            4468899999   5532 223333  467779999999 665543    555433322 2   368999998653

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0038  Score=45.88  Aligned_cols=54  Identities=22%  Similarity=0.115  Sum_probs=37.1

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+|+|+++|   .+.++     -++.|.+||+++| +.+.|     .||-..... +   .+.|++|+...
T Consensus         6 ~~~~~al~dy---~a~~~-----~eLs~~~Gd~i~v-~~~~~-----~ww~~~~~~-~---g~~G~~P~~yV   59 (62)
T d2iima1           6 DNLVIALHSY---EPSHD-----GDLGFEKGEQLRI-LEQSG-----EWWKAQSLT-T---GQEGFIPFNFV   59 (62)
T ss_dssp             TCEEEESSCB---CCCST-----TBCCBCTTCEEEE-EECCS-----SEEEEEETT-T---CCEEEEEGGGE
T ss_pred             CcEEEECCCC---CcCCc-----CCcCCCCCCEEEE-eEEcC-----CCEEEEecc-C---CeEeEEcHHHE
Confidence            3467788999   33222     2467789999999 66665     588765543 2   47999999753

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0073  Score=48.13  Aligned_cols=54  Identities=7%  Similarity=-0.158  Sum_probs=35.9

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+||+|+|-+   .++     -|+.|..||+|+| +.+++.  ...||..+.   +   .+.|++|+...
T Consensus         6 ~~~rAlydy~~---~~~-----~ELs~~~Gd~v~V-l~~~~~--~~~w~~~~~---~---g~~G~~P~~Yv   59 (93)
T d1uffa_           6 SGYRALYPFEA---RNH-----DEMSFNSGDIIQV-DEKTVG--EPGWLYGSF---Q---GNFGWFPCNYV   59 (93)
T ss_dssp             CCEEESSCBCC---CSS-----SCCCBCTTCEEEE-CSSCCC--SSSEEEEEE---T---TEEEEEETTTE
T ss_pred             eEEEECccCCC---CCC-----CCccCcCCCEEEE-EEeccC--CCCEEEEEe---C---CcEEEEchHHE
Confidence            45699999933   322     2567889999999 655432  114666643   2   47899999865

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0099  Score=43.83  Aligned_cols=51  Identities=14%  Similarity=0.040  Sum_probs=35.7

Q ss_pred             CCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         317 QPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       317 ra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      +|+++|   .+.++     .++.|..||++.| +.+.+.    .||-++... +   .+.|++|+...
T Consensus         6 vAlydf---~~~~~-----~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~~-~---g~~G~vP~~yv   56 (64)
T d1fmka1           6 VALYDY---ESRTE-----TDLSFKKGERLQI-VNNTEG----DWWLAHSLS-T---GQTGYIPSNYV   56 (64)
T ss_dssp             EESSCB---CCCSS-----SBCCBCTTCEEEE-SCCCSS----SEEEEEETT-T---CCEEEEEGGGE
T ss_pred             EECccC---CCcCc-----CCcCCCCCCEEEE-EEEcCC----CcEEEEECC-C---CCEEEEehHHe
Confidence            377888   33222     3567889999999 665554    799987653 3   37899999753

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.61  E-value=0.0046  Score=48.33  Aligned_cols=61  Identities=10%  Similarity=-0.017  Sum_probs=38.4

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCC-CCCCcCccccccCC----CCccceeeeccChh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDR-PVSPINNSMDSLGR----NNQEVQKGIIPNKA  383 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~-~~~~~wwqa~~~~~----~~~~~~~GlIPs~~  383 (627)
                      .++||+++|.+   .+     .-++.|.+||++.| ++++|. .....||.....++    .....+.|++|+..
T Consensus        13 ~~~~Alydy~a---~~-----~~ELs~~~Gd~i~V-l~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~ny   78 (83)
T d1bb9a_          13 FKVQAQHDYTA---TD-----TDELQLKAGDVVLV-IPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENF   78 (83)
T ss_dssp             EEEEESSCBCC---SS-----TTBCCBCTTCEEEE-ECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGG
T ss_pred             EEEEEceeECC---CC-----CCEecCcCCCEEEE-EEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhH
Confidence            45999999933   22     23678889999999 655432 11225998754321    11124789999974

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.012  Score=46.90  Aligned_cols=57  Identities=21%  Similarity=0.196  Sum_probs=40.2

Q ss_pred             CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..+| +|+++|   .+.++     -++.|.+||++.| +.+.|......||.++.   +   .+.|++|+...
T Consensus        17 ~~~~-~a~~~f---~a~~~-----~eLs~~~Gd~v~v-l~~~d~~~~~~Ww~~~~---~---g~~G~~P~~yv   73 (92)
T d1ug1a_          17 EKLF-QAERNF---NAAQD-----LDVSLLEGDLVGV-IKKKDPMGSQNRWLIDN---G---VTKGFVYSSFL   73 (92)
T ss_dssp             GGEE-EESSCC---CCCSS-----SCCCCCTTCEEEE-EESCCTTSCSSEEEEEC---S---SSEEEEEGGGE
T ss_pred             CeEE-EEcCCc---CCCCC-----CeEEEecccEEEE-EEcccccccCCceEEEe---c---ccEEEEEhhhc
Confidence            3444 688888   33222     2567889999999 88776555568999864   2   36899999854

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.0059  Score=50.01  Aligned_cols=61  Identities=11%  Similarity=0.005  Sum_probs=40.1

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCC--ccceeeeccChhh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNN--QEVQKGIIPNKAR  384 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~--~~~~~GlIPs~~~  384 (627)
                      .++||+++|.+.   +     ..++.|.+||++.| +.+.+. ....||.+...+...  ...+.|++|+...
T Consensus        22 ~~~~Alydy~~~---~-----~~eL~f~~Gd~i~V-l~k~~~-~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV   84 (106)
T d1i1ja_          22 SMAVALQDYMAP---D-----CRFLTIHRGQVVYV-FSKLKG-RGRLFWGGSVQGDYYGDLAARLGYFPSSIV   84 (106)
T ss_dssp             EEEEESSCBCCS---S-----TTBCCBCTTCEEEE-EEEECG-GGTTEEEEEEBCSSTTCBCSCCEEEEGGGE
T ss_pred             eEEEEccccCCC---C-----CCCccCCCCCEEEE-EEecCC-CCcceEEEEecCccccccCCcccccccccE
Confidence            469999999442   2     23678889999999 654210 112699987655321  1247899999854

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0077  Score=43.17  Aligned_cols=49  Identities=18%  Similarity=0.120  Sum_probs=29.0

Q ss_pred             CCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         317 QPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       317 ra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .|+++|.|   .++     -++.|.+||++.| +++.+.   ..||.+..   +   .+.|++|+..
T Consensus         4 ~Alydy~a---~~~-----~ELs~~~Gd~v~v-~~~~~~---~~W~~~~~---~---g~~G~vP~ny   52 (56)
T d1gria1           4 IAKYDFKA---TAD-----DELSFKRGDILKV-LNEECD---QNWYKAEL---N---GKDGFIPKNY   52 (56)
T ss_dssp             EECSCBCC---CSS-----SCCCBCTTCEEEC----------CCEEEEES---S---SCEEEEEGGG
T ss_pred             EEeeCCCC---CCC-----CCcCCCCCCEEEE-EeccCC---CCeEEEEE---C---CcEEEEehhh
Confidence            46777733   221     2567889999998 543321   25887753   2   3789999875

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.0071  Score=50.51  Aligned_cols=52  Identities=13%  Similarity=0.077  Sum_probs=37.7

Q ss_pred             ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827         313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR  384 (627)
Q Consensus       313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~  384 (627)
                      ..|+ |+++|   .+.++     -++.|..||++.| +.+.|.    .||.++.   +   .+.|++|+...
T Consensus        15 ~~~~-alydy---~a~~~-----dELs~~~Gd~i~V-l~~~~~----gWw~g~~---~---g~~G~~P~~yv   66 (118)
T d1ng2a2          15 EPYV-AIKAY---TAVEG-----DEVSLLEGEAVEV-IHKLLD----GWWVIRK---D---DVTGYFPSMYL   66 (118)
T ss_dssp             EEEE-ESSCB---CCCST-----TBCCBCTTCEEEE-EECCTT----SEEEEEE---T---TEEEEEEGGGE
T ss_pred             cEEE-ECcCC---CCCCC-----CEecCCCCCEEEE-eEecCC----CeEEEEE---C---CeEEEEehhhE
Confidence            4555 88888   33222     2667889999999 776665    7999865   2   37899999865

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.93  E-value=0.012  Score=42.40  Aligned_cols=52  Identities=13%  Similarity=-0.001  Sum_probs=34.3

Q ss_pred             eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      +++|+++|   .+.++     -++.|..||++.| +.+.|.  ...||.+..   +   .+.|++|+..
T Consensus         3 ~~~Alydy---~a~~~-----~ELs~~~Gd~v~v-l~~~~~--~~~W~~~~~---~---g~~G~vP~~y   54 (58)
T d1oota_           3 KAVALYSF---AGEES-----GDLPFRKGDVITI-LKKSDS--QNDWWTGRV---N---GREGIFPANY   54 (58)
T ss_dssp             EEEESSCB---CCCST-----TBCCBCTTCEEEE-EECCSC--TTSEEEEEE---T---TEEEEEEGGG
T ss_pred             eEEEccCC---CCCCC-----CCccCCCCCEEEE-EEeecC--CCCEEEEEE---C---CcEEEEcHHH
Confidence            47788898   33332     2567889999999 555432  114777754   2   3889999864

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.024  Score=39.96  Aligned_cols=36  Identities=11%  Similarity=0.064  Sum_probs=28.0

Q ss_pred             CCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         337 RAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       337 ~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      ++.|..||++.| +.+.|.    .||.++.   +   .+.|++|+..
T Consensus        16 eLs~~~Gd~v~v-l~~~~~----gWw~g~~---~---g~~G~~P~~y   51 (53)
T d1wlpb1          16 EVSLLEGEAVEV-IHKLLD----GWWVIRK---D---DVTGYFPSMY   51 (53)
T ss_dssp             BCCBCTTCEEEE-EECCTT----SSEEEES---S---SCEEEECSTT
T ss_pred             EecCCCCCEEEE-EeecCC----ceEEEEE---C---CcEeEecHHh
Confidence            567889999999 666654    7999963   2   3799999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=93.09  E-value=0.15  Score=44.00  Aligned_cols=134  Identities=4%  Similarity=0.045  Sum_probs=66.4

Q ss_pred             Cce--EEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhc-cc---ccCCcee----------hHHhHH
Q psy9827         454 IRP--VVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMY-QS---SKEPGMY----------QGKDSM  514 (627)
Q Consensus       454 ~Rp--vVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~-~~---~~~~~~Y----------~V~~v~  514 (627)
                      +++  |+|+||+   |+|+.+.|-+.+...+.       ++-..+...... ..   .+.+..+          .+..++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   75 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQH-------LEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIM   75 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEE-------EEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcE-------EeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhh
Confidence            456  8999999   99999999887643211       111111111100 00   0001111          556777


Q ss_pred             hCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCC--cccC--CCCC-HHHHH-----HHHHHHHH-HHHHhcCcccEE
Q psy9827         515 YQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDS--MYQG--KDIK-KEVKI-----KLFEQSQK-LEKVWSHVFTGT  581 (627)
Q Consensus       515 ~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~pps--l~~~--~~~~-e~~~~-----~~~~~~~~-~e~~~~~~fd~v  581 (627)
                      ..+..++++.. ..+ ..   .....  +||+..|-  +.++  +|.. .....     +.+..... ....|.  .+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~---~~~~~--vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~  148 (174)
T d1y63a_          76 VSRGNHVVDYHSSELFPE---RWFHM--VVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE--DDIV  148 (174)
T ss_dssp             TSSSEEEEECSCCTTSCG---GGCSE--EEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC--GGGE
T ss_pred             hhcccccccHHHHHHHHH---hcCce--EEEEECCHHHHHHHHHhCCCcccccccchhhhhhhhhHHHHHHhhc--CCEE
Confidence            78888999887 333 33   22335  67887653  2222  2322 11011     11111111 111232  2444


Q ss_pred             E--ECCCHHHHHHHHHHHHHhh
Q psy9827         582 I--TLSGVDVWYRKTRELIEKQ  601 (627)
Q Consensus       582 i--~n~~l~~~~~~l~~~i~~~  601 (627)
                      |  .|+++++....|.+++...
T Consensus       149 i~~~~~t~ee~~~~V~~I~~~i  170 (174)
T d1y63a_         149 LVRENDTLEQMAATVEEIRERV  170 (174)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHHH
Confidence            4  3678888888888777653

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.05  E-value=0.024  Score=40.57  Aligned_cols=38  Identities=13%  Similarity=0.103  Sum_probs=26.3

Q ss_pred             CCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         336 PRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       336 ~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .++.|.+||++.| +.+++.   ..||.++.   +   .+.|+||+..
T Consensus        15 ~eLs~~~Gd~i~v-l~~~~~---~~W~~~~~---~---g~~G~~P~~y   52 (57)
T d1opka1          15 NTLSITKGEKLRV-LGYNHN---GEWCEAQT---K---NGQGWVPSNY   52 (57)
T ss_dssp             TBCCBCTTCEEEE-EEECTT---SSEEEEEC---S---SCEEEEEGGG
T ss_pred             CCcCCCCCCEEEE-eEecCC---CCEEEEEE---C---CCEeEEchhh
Confidence            3567889999999 655443   24776754   2   3679999974

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.17  E-value=0.034  Score=41.45  Aligned_cols=39  Identities=8%  Similarity=0.055  Sum_probs=28.1

Q ss_pred             CCCCCCCCCcccccccC-CCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827         336 PRAGRSRNPLLDVSLSQ-LDRPVSPINNSMDSLGRNNQEVQKGIIPNKA  383 (627)
Q Consensus       336 ~~~gl~~gdil~v~~~~-~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~  383 (627)
                      .++.|..||++.| +.+ .|.    .||.++... +   .+.|++|+..
T Consensus        25 ~eLsf~~GD~i~V-l~~~~~~----gWw~G~~~~-~---g~~G~fP~ny   64 (69)
T d1gcqc_          25 PFLRLNPGDIVEL-TKAEAEH----NWWEGRNTA-T---NEVGWFPCNR   64 (69)
T ss_dssp             CBCCBCTTCEEEE-EECCTTC----SEEEEEETT-T---TEEEEEEGGG
T ss_pred             CEeeEcCCCEEEE-EEEecCC----CEEEEEECC-C---CCEEEEeHHH
Confidence            3567889999999 543 332    699997643 2   4899999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.70  E-value=0.051  Score=47.34  Aligned_cols=138  Identities=7%  Similarity=-0.124  Sum_probs=71.2

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccC-------------Ccee-hHHhHHhC
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKE-------------PGMY-QGKDSMYQ  516 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~-------------~~~Y-~V~~v~~~  516 (627)
                      .|.|+|.||+   |+|+.+.|.+.+...|..      ++.+.|...+..+....             ..+. .+...+..
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVH------FHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKE   77 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEE------ECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEE------ecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhc
Confidence            5789999999   999999987765433321      12222222221110000             0011 55566777


Q ss_pred             CCcEEEecC---Cce-eccccCCCCceeEEEEcCCCcccC-----CCC-----CHHHHHHHHHHHHHHHHHhcCcccEEE
Q psy9827         517 GKDSMYQGK---ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDI-----KKEVKIKLFEQSQKLEKVWSHVFTGTI  582 (627)
Q Consensus       517 gk~ciLdi~---~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~-----~e~~~~~~~~~~~~~e~~~~~~fd~vi  582 (627)
                      +..+|+|--   ..+ .++ ....+. .+||+.++- +++     +|.     ..+....+.+.    -..+..+.+++|
T Consensus        78 ~~~vi~~~~~~~~~~~~~~-~~~~~~-~~i~l~~~~-e~~~~R~~~R~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i  150 (176)
T d1zp6a1          78 GYFVILDGVVRPDWLPAFT-ALARPL-HYIVLRTTA-AEAIERCLDRGGDSLSDPLVVADLHSQ----FADLGAFEHHVL  150 (176)
T ss_dssp             SCEEEECSCCCTTTTHHHH-TTCSCE-EEEEEECCH-HHHHHHHHTTCTTSCCCHHHHHHHHHH----TTCCGGGGGGEE
T ss_pred             CCCeEecccccHHHHHHHH-hccccc-ccccCCCCH-HHHHHHHHhCCCccccchhhHHHHHHH----HhhcccccCEEE
Confidence            888888865   222 111 122232 156665543 211     222     12212222221    122344567788


Q ss_pred             ECC--CHHHHHHHHHHHHHhhCCC
Q psy9827         583 TLS--GVDVWYRKTRELIEKQQSS  604 (627)
Q Consensus       583 ~n~--~l~~~~~~l~~~i~~~~~~  604 (627)
                      .++  +.+++.+++.+.+...+.+
T Consensus       151 dt~~~~~ee~~~~I~~~l~~~~~r  174 (176)
T d1zp6a1         151 PVSGKDTDQALQSAINALQSGRFR  174 (176)
T ss_dssp             ECTTCCTTTTTTTTHHHHHHTTSC
T ss_pred             ECCCCCHHHHHHHHHHHHHcCCcC
Confidence            755  5789999999988876544

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=91.30  E-value=0.16  Score=43.58  Aligned_cols=140  Identities=8%  Similarity=-0.094  Sum_probs=68.4

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCCC--CCC--CHHHHHHHHhcccccCCcee-hHHhHHhCCC
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRKF--NFI--LWATIKDTAMYQSSKEPGMY-QGKDSMYQGK  518 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~~--~Fv--s~e~f~~~i~~~~~~~~~~Y-~V~~v~~~gk  518 (627)
                      ++.|+|.||+   |+|+.++|.+.++..+..       ....  .+.  ..+.+....       .... .+...++.+.
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~   74 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTW-------KNITDLTVNFLLAQN   74 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHH-------HHHHHHHHHHHHTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHHHHH-------HHHHHHHHHHHhcCC
Confidence            4678999999   999999999887653322       0111  110  011111100       0111 5667778899


Q ss_pred             cEEEecC------Cce-eccccCCCCceeEEEEcCCCcccC-----CCCCH-HHHHHHHHHHHHHHHHhcCcccEEEECC
Q psy9827         519 DSMYQGK------ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDIKK-EVKIKLFEQSQKLEKVWSHVFTGTITLS  585 (627)
Q Consensus       519 ~ciLdi~------~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~~e-~~~~~~~~~~~~~e~~~~~~fd~vi~n~  585 (627)
                      .+++|..      ..+ ......+.+...+++...++.+.+     .|..+ ....+.++...+++. +...-+++|.|+
T Consensus        75 ~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~id~~  153 (176)
T d2bdta1          75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFES-KGIDERYFYNTS  153 (176)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHHHHH-TTCCTTSEEECS
T ss_pred             CcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHHHHHHHHHHHh-CCCCCeEEEECC
Confidence            9999876      111 000001222211444444553222     33222 112333333333332 223334566665


Q ss_pred             --CHHHHHHHHHHHHHhh
Q psy9827         586 --GVDVWYRKTRELIEKQ  601 (627)
Q Consensus       586 --~l~~~~~~l~~~i~~~  601 (627)
                        +.++..+.|+++++..
T Consensus       154 ~~~~~~~~~~I~~i~~~~  171 (176)
T d2bdta1         154 HLQPTNLNDIVKNLKTNP  171 (176)
T ss_dssp             SSCGGGHHHHHHHHHHCG
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence              4577788888887764

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.077  Score=39.63  Aligned_cols=55  Identities=11%  Similarity=0.029  Sum_probs=36.0

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhH
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARA  385 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~  385 (627)
                      .+++|+++|   .+.++     -++.|.+||++.| +.+.+.   ..||.++..  +   .+.|++|+...+
T Consensus         7 ~~~~Alydy---~a~~~-----~ELs~~~Gd~i~v-l~~~~~---~~W~~~~~~--~---g~~G~~P~~yve   61 (71)
T d1k9aa1           7 TECIAKYNF---HGTAE-----QDLPFCKGDVLTI-VAVTKD---PNWYKAKNK--V---GREGIIPANYVQ   61 (71)
T ss_dssp             CEEEESSCB---CCSSS-----SBCCBCTTCEEEE-EEECSS---TTEEEEECT--T---CCEEEEEGGGEE
T ss_pred             CEEEEccCC---CCCCC-----CCccCCCCCEEEE-eEeccC---CCEEEEEeC--C---CCEEEEchHHeE
Confidence            457789999   33221     3567789999998 554321   257877542  2   378999998653

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.022  Score=44.26  Aligned_cols=58  Identities=9%  Similarity=-0.146  Sum_probs=36.1

Q ss_pred             eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCC-----------CCCCcCccccccCCCCccceeeeccCh
Q psy9827         314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDR-----------PVSPINNSMDSLGRNNQEVQKGIIPNK  382 (627)
Q Consensus       314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~-----------~~~~~wwqa~~~~~~~~~~~~GlIPs~  382 (627)
                      .-+||+++|.+   .++     -++.|..||++.| +.+.+.           .....||.+++.. +   .+.|++|+.
T Consensus         4 ~~~raly~y~~---~~~-----~eLs~~~Gd~i~V-~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~-~---g~~G~FP~n   70 (83)
T d1phta_           4 YQYRALYDYKK---ERE-----EDIDLHLGDILTV-NKGSLVALGFSDGQEARPEEIGWLNGYNET-T---GERGDFPGT   70 (83)
T ss_dssp             EEEEECSCBCC---SST-----TBCCBCTTCEEEE-EHHHHHTTTCCTTGGGCHHHHCEEEEEETT-T---TEEEEEEGG
T ss_pred             CEEEEcCccCC---CCC-----CcccccCCCEEEE-EeccccccccccccccccCCCCeEEEEECC-C---CcEeeEehh
Confidence            34789999933   222     2567889999998 332100           0011499997643 2   489999997


Q ss_pred             hh
Q psy9827         383 AR  384 (627)
Q Consensus       383 ~~  384 (627)
                      ..
T Consensus        71 YV   72 (83)
T d1phta_          71 YV   72 (83)
T ss_dssp             GE
T ss_pred             hE
Confidence            43

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.28  Score=42.09  Aligned_cols=140  Identities=12%  Similarity=0.003  Sum_probs=67.1

Q ss_pred             CCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCC-c---ee-----hHHhHHhCCCcE
Q psy9827         453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEP-G---MY-----QGKDSMYQGKDS  520 (627)
Q Consensus       453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~-~---~Y-----~V~~v~~~gk~c  520 (627)
                      .++.+||+||+   |+|+.++|.+...-.+...  +.+...... .....+..+.. .   .+     .+...+..+...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~--d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG--DFLHPRRNI-EKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS   81 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG--GGGCCHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeech--hhhhHHHHh-hhhccCcceehhhhHHHHHHHHHHHHHHHhccCce
Confidence            46789999999   9999999987643222211  111111111 11111111010 0   00     445555667777


Q ss_pred             EEecC---Cce--eccccCCCCceeEEEEcCC-C-cccC--CCC----CHHHHHHHHHHHHHHHHHhcCcccEEEEC--C
Q psy9827         521 MYQGK---ESM--YQGKDSMYQGKDSMYQGKD-S-MYQG--KDI----KKEVKIKLFEQSQKLEKVWSHVFTGTITL--S  585 (627)
Q Consensus       521 iLdi~---~~l--~~~~~~~~P~~~vIFI~pp-s-l~~~--~~~----~e~~~~~~~~~~~~~e~~~~~~fd~vi~n--~  585 (627)
                      +++..   ...  .++  ++.+-..+||+..| . +.++  +|.    ..+   .+..+.+.+|.-+....|+++++  .
T Consensus        82 ~~~~~~~~~~~~~~~~--~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~~~---~~~~~~~~~e~~~~~e~~~~~id~~~  156 (171)
T d1knqa_          82 LIVCSALKKHYRDLLR--EGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQ---MLVTQFETLQEPGADETDVLVVDIDQ  156 (171)
T ss_dssp             EEECCCCSHHHHHHHH--TTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHH---HHHHHHHHCCCCCTTCTTEEEEECSS
T ss_pred             EeeccchHHHHHHHHH--HhCCCceEEeecCCHHHHHHHHHhCcCCCccHH---HHHhhHHHhhCCCcccCCEEEEeCCC
Confidence            77666   111  111  33332125666544 3 2122  222    222   12222223343344556666554  3


Q ss_pred             CHHHHHHHHHHHHHh
Q psy9827         586 GVDVWYRKTRELIEK  600 (627)
Q Consensus       586 ~l~~~~~~l~~~i~~  600 (627)
                      .+|+.++++.++|++
T Consensus       157 ~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         157 PLEGVVASTIEVIKK  171 (171)
T ss_dssp             CHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhcC
Confidence            799999999888763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.97  E-value=0.19  Score=44.47  Aligned_cols=144  Identities=10%  Similarity=0.012  Sum_probs=66.2

Q ss_pred             eEEEeCcc---HHHHHHHHhhhCCCCcccC---CCC----CCCCHHHHHHHHhcccccCCcee------hHHhHHhCCCc
Q psy9827         456 PVVLFGPV---ADLARDKLLKDFPDKFSAP---RKF----NFILWATIKDTAMYQSSKEPGMY------QGKDSMYQGKD  519 (627)
Q Consensus       456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~~---~~~----~Fvs~e~f~~~i~~~~~~~~~~Y------~V~~v~~~gk~  519 (627)
                      -|+|+||.   |+|+.++|.+.+.-.+.+.   .+.    ..-..+.+.+.++.|........      .+......++.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   84 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENG   84 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccccCc
Confidence            37899998   9999999877653222110   000    00001112222222322111111      22222333456


Q ss_pred             EEEecC-Cc---e-eccccCCCCceeEEEEcCCC--cccC--CCCCHHHHHHHHHHHHH----HHHHhcCcccEEEE-CC
Q psy9827         520 SMYQGK-ES---M-YQGKDSMYQGKDSMYQGKDS--MYQG--KDIKKEVKIKLFEQSQK----LEKVWSHVFTGTIT-LS  585 (627)
Q Consensus       520 ciLdi~-~~---l-~~~~~~~~P~~~vIFI~pps--l~~~--~~~~e~~~~~~~~~~~~----~e~~~~~~fd~vi~-n~  585 (627)
                      .++|-- ..   . ........|.. +||+..|.  +.++  .+.+++.++++++.-.+    +...|... -++|. |.
T Consensus        85 ~vid~~~~~~~q~~~l~~~~~~p~~-~i~L~~~~e~l~~R~~~~~~~e~~~~rl~~y~~~~~~l~~~y~~~-~~~Id~~~  162 (189)
T d1zaka1          85 WLLDGYPRSYSQAMALETLEIRPDT-FILLDVPDELLVERVVFDDTEEKVKLRLETYYQNIESLLSTYENI-IVKVQGDA  162 (189)
T ss_dssp             EEEESCCCSHHHHHHHHTTTCCCSE-EEEEECCHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHTTCCC-EEEEECSS
T ss_pred             EEeeccchhhHHHhhhhhcccccch-heeechhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEECCC
Confidence            777765 11   1 11111455631 56665543  2222  34444445555444332    22223222 13343 45


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy9827         586 GVDVWYRKTRELIEKQ  601 (627)
Q Consensus       586 ~l~~~~~~l~~~i~~~  601 (627)
                      ++++.++++.++|...
T Consensus       163 ~idev~~~I~~~l~~i  178 (189)
T d1zaka1         163 TVDAVFAKIDELLGSI  178 (189)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            8999999999988654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=87.92  E-value=1.9  Score=36.56  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             CCCCceEEEeCcc---HHHHHHHHhhhCCCCcc
Q psy9827         451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFS  480 (627)
Q Consensus       451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~  480 (627)
                      +.+.|-|+|+||+   |+||.++|.+.+...|.
T Consensus         4 ~~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i   36 (192)
T d1lw7a2           4 PFFAKTVAILGGESSGKSVLVNKLAAVFNTTSA   36 (192)
T ss_dssp             GGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            4578999999999   99999999987654443

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=87.87  E-value=1.5  Score=37.31  Aligned_cols=129  Identities=11%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             ceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHH-HHHHhccc----cc--CCc-ee-----hHHhHHhCCC
Q psy9827         455 RPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATI-KDTAMYQS----SK--EPG-MY-----QGKDSMYQGK  518 (627)
Q Consensus       455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f-~~~i~~~~----~~--~~~-~Y-----~V~~v~~~gk  518 (627)
                      |.|||+||+   |+|+-++|-+..-    .    .|++-+.+ ++.  +|.    ..  .|. .|     .+...+....
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~----~----~~~d~d~~ie~~--~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~   70 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLD----L----VFLDSDFLIEQK--FNQKVSEIFEQKRENFFREQEQKMADFFSSCE   70 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT----C----EEEEHHHHHHHH--HTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC----C----CEEecCchhhhH--HhhhhhhHHHhhhhccchhhhhhhchhhhhcc
Confidence            458999998   9999998877531    1    13332211 111  010    00  011 11     4445555566


Q ss_pred             cEEEecC-Cce-eccccCCCCceeEEEEcCCC--cccC-------CC---CCHHHHHHHHHHHHHHHHHhcCcccEEEEC
Q psy9827         519 DSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDS--MYQG-------KD---IKKEVKIKLFEQSQKLEKVWSHVFTGTITL  584 (627)
Q Consensus       519 ~ciLdi~-~~l-~~~~~~~~P~~~vIFI~pps--l~~~-------~~---~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n  584 (627)
                      .+++... ..+ ..   .+.....+||+..|-  +.++       .|   ..+...+++++.-.   .-|...-|++|..
T Consensus        71 ~~v~~~~g~~~~~~---~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~---~~Y~~~ad~~Idt  144 (161)
T d1viaa_          71 KACIATGGGFVNVS---NLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERL---SKYEQKANFILNI  144 (161)
T ss_dssp             SEEEECCTTGGGST---TGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHH---HHHHHHCSEEEEC
T ss_pred             ccccccccchhhHH---HHHhCCeEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHH---HHHHhhCCEEEEC
Confidence            7777776 333 22   222222389998775  2222       11   13333555544322   2244455888874


Q ss_pred             C--CHHHHHHHHHHHHH
Q psy9827         585 S--GVDVWYRKTRELIE  599 (627)
Q Consensus       585 ~--~l~~~~~~l~~~i~  599 (627)
                      +  +.++.++++.++|+
T Consensus       145 ~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         145 ENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             TTCCHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhC
Confidence            4  68999999888763

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.83  E-value=2.7  Score=36.65  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=20.2

Q ss_pred             CCCCceEEEeCcc---HHHHHHHHhhhC
Q psy9827         451 PGFIRPVVLFGPV---ADLARDKLLKDF  475 (627)
Q Consensus       451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~  475 (627)
                      |....-|+|+||.   |+|+.++|.+.+
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4445668889998   999999998865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.83  E-value=0.6  Score=41.14  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=17.8

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhC
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDF  475 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~  475 (627)
                      +..|+|+||+   |+|+.++|.+.+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3457789998   999999998754

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=86.36  E-value=0.13  Score=48.30  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=34.2

Q ss_pred             ccccccCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCc
Q psy9827           8 FITFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDP   51 (627)
Q Consensus         8 ~~~~~~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~   51 (627)
                      +..+.|++ ++++++|+       |+||||| +++....+...|++|++|..
T Consensus       185 ~~~~iqtda~i~~GnSGGPl~n~~G~vIGI~-t~~~~~~~~~~gi~faIP~~  235 (249)
T d1ky9a2         185 YENFIQTDAAINRGNAGGALVNLNGELIGIN-TAILAPDGGNIGIGFAIPSN  235 (249)
T ss_dssp             CCCCEEESCCCTTSCCCSEEECTTSCEEEEE-ECSSTTSCCCSSSEEEEEHH
T ss_pred             ccceEEEeeeecCCCCCceEECCCCEEEEEE-EEEeccCCCcccEEEEEEHH
Confidence            34456666 89999884       8899999 99988888888888888754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=86.22  E-value=0.81  Score=40.42  Aligned_cols=71  Identities=8%  Similarity=0.017  Sum_probs=38.5

Q ss_pred             EEEEcCCC--cccCCCCCHHHHHHHHHHHHH----HHHHhcCccc-EEEECCCHHHHHHHHHHHHHhh-CCCCeeEeCC
Q psy9827         541 SMYQGKDS--MYQGKDIKKEVKIKLFEQSQK----LEKVWSHVFT-GTITLSGVDVWYRKTRELIEKQ-QSSPVWISET  611 (627)
Q Consensus       541 vIFI~pps--l~~~~~~~e~~~~~~~~~~~~----~e~~~~~~fd-~vi~n~~l~~~~~~l~~~i~~~-~~~~~Wvp~~  611 (627)
                      +||+..|.  +.++...+++.+++.++.-.+    +-..|...-. .+|..++.++.++++.++|... ..+.++.+.+
T Consensus       110 vi~L~v~~~~l~~R~~~r~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~idg~~~~eV~~~I~~~i~~~l~~~~~~~~~~  188 (189)
T d2ak3a1         110 VINLNVPFEVIKQRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQTKLPQRSQETSVT  188 (189)
T ss_dssp             EEEEECCHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSHHHHHHHHHHHHHTTSCBCSCCCCSC
T ss_pred             EEEEeccchhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHHHhhccccCCCCC
Confidence            78887775  333322233435444443322    2222332212 3345568999999999999763 4466666554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=82.81  E-value=2.1  Score=36.38  Aligned_cols=21  Identities=14%  Similarity=0.257  Sum_probs=17.9

Q ss_pred             ceEEEeCcc---HHHHHHHHhhhC
Q psy9827         455 RPVVLFGPV---ADLARDKLLKDF  475 (627)
Q Consensus       455 RpvVl~Gp~---k~~l~~~Ll~~~  475 (627)
                      |.|+|.||.   |+|+.++|.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            679999998   999999987653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=82.67  E-value=3.4  Score=34.54  Aligned_cols=28  Identities=0%  Similarity=0.042  Sum_probs=20.3

Q ss_pred             HhcCcccEEEECCCHHHHHHHHHHHHHh
Q psy9827         573 VWSHVFTGTITLSGVDVWYRKTRELIEK  600 (627)
Q Consensus       573 ~~~~~fd~vi~n~~l~~~~~~l~~~i~~  600 (627)
                      .|...++.++.|++.++..+.+.++++.
T Consensus       136 ~~~~~~~i~~~~~~~~~~~~~i~~Ii~~  163 (173)
T d1rkba_         136 SYKEEIVHQLPSNKPEELENNVDQILKW  163 (173)
T ss_dssp             HSCGGGEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HhhhccEEEECCCCHHHHHHHHHHHHHH
Confidence            3555677888888888877777777654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=82.54  E-value=1.6  Score=36.21  Aligned_cols=24  Identities=8%  Similarity=0.131  Sum_probs=20.6

Q ss_pred             CceEEEeCcc---HHHHHHHHhhhCCC
Q psy9827         454 IRPVVLFGPV---ADLARDKLLKDFPD  477 (627)
Q Consensus       454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~  477 (627)
                      ++.|+|.||+   |+|+.++|+++++.
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~   28 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPG   28 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            4678999999   99999999887764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=81.65  E-value=1.2  Score=38.43  Aligned_cols=64  Identities=11%  Similarity=-0.016  Sum_probs=34.8

Q ss_pred             CCCCceeEEEEcCCC--cccC--CCCCHHHHHHHHHHHHH----HHHHhcC-----cccEEEEC--CCHHHHHHHHHHHH
Q psy9827         534 SMYQGKDSMYQGKDS--MYQG--KDIKKEVKIKLFEQSQK----LEKVWSH-----VFTGTITL--SGVDVWYRKTRELI  598 (627)
Q Consensus       534 ~~~P~~~vIFI~pps--l~~~--~~~~e~~~~~~~~~~~~----~e~~~~~-----~fd~vi~n--~~l~~~~~~l~~~i  598 (627)
                      ...|- .+||+..|.  +.++  ++.+++.++++++.-.+    +...|..     ...++.+|  .++++.+++|.++|
T Consensus       100 ~~~~~-~vi~L~~~~~~l~~R~~~~~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         100 GINVD-YVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             TCCCS-EEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cCCce-EEEEeccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence            34552 167777775  2222  56666656666554333    2222221     12234443  48899999998875