Psyllid ID: psy9829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPSILSYFHR
Secondary Structure (PSIPRED)
cccccccccccccEEEHHHHHHHHcccEEEEEccccHHHHHHHcccccEEEEEccccHHHHHHHHccccccccHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEEEcccccccEEEcccccccccccccccccccEEEEEEEccccccccEEEEEEccccccccEEEEEEEcccccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcHHHHHHHccccEEEEccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHccccccccccHHHHHHHHcccccccccccHHHHHHHHccccccccccccccEEEEEEEccccccccEEEccccEEEEEEccccccEcEEEEEEEccccccHHHHcccccccccccccEEEccccEEEEEEccccccccHHHHHHHHcccEEccEEEEEEcccccHccccccccccccccEEEEEcccccccccHHHHHHHHHHHccccEEEEEEcccccccEcccccccccccccccccccccccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
mmeesdskkcsgiIRLSAIRDMMDRgrhgllditpnavdrlnyaqfYPIVIFLRAETKSNVKELRAGIpkyhtnlarqrsrvlfpvgstfvgsvlgargaldlanydpstkphskstgshlthfnydqpekgemsfrkgdVFHVIDTlhngvvgsWQVFRIAHNCISAQikrthfnydqpekgemsfrkgdVFHVIDTlhngvvgswQVFRIDFGIILGNKIFVKEVTHRldnnasagthqlaEGDVLLKinnhptdgmsvKEARKLIDSSKEKLSLTIrrevprptayqesttlpgkennymdplstnyssqnlyvqpptrggpsilsyfhr
Flexible Loop (DISEMBL)
mmeesdskkcsgIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGipkyhtnlarqrsrVLFPVGSTFVGSVLGARGALDLANYDPStkphskstgshlTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDsskeklsltirrevprptayqesttlpgkennyMDPLSTNYSSQnlyvqpptrggpsilsyfhr
Low Complexity Region (SEG)
MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPSILSYFHR
Disordered region (IsUnstruct)
***********GIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGALDLAN******************************FRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKI**********************************************************************************
Disordered Region (DISOPRED)
**************RLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKS**************************VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNY*********FRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQ***********************FHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVT**************AEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR*****************************************************
Disordered Region (DISEMBL)
**********SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGALDLANYD***********SHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPSILSYFHR
Disordered Region (DISPRO)
**********SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNA******LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY***************P*STNYSSQNLYVQPPTRGGPSILSYFHR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPSILSYFHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
Q07157	1748	Tight junction protein ZO	yes	N/A	0.165	0.031	0.586	4e-15
O97758	1769	Tight junction protein ZO	yes	N/A	0.165	0.031	0.586	4e-15
P39447	1745	Tight junction protein ZO	yes	N/A	0.162	0.030	0.596	6e-15
Q9Z0U1	1167	Tight junction protein ZO	no	N/A	0.234	0.066	0.390	1e-11
Q95168	1174	Tight junction protein ZO	no	N/A	0.180	0.051	0.444	1e-11
Q9UDY2	1190	Tight junction protein ZO	no	N/A	0.180	0.050	0.428	2e-11
Q9QXY1	905	Tight junction protein ZO	no	N/A	0.231	0.085	0.421	3e-11
O62683	898	Tight junction protein ZO	no	N/A	0.210	0.077	0.405	1e-10
O95049	933	Tight junction protein ZO	no	N/A	0.210	0.075	0.391	5e-10
Q8TDM6	1919	Disks large homolog 5 OS=	no	N/A	0.189	0.032	0.378	2e-06

>sp|Q07157|ZO1_HUMAN Tight junction protein ZO-1 OS=Homo sapiens GN=TJP1 PE=1 SV=3

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query: 8   KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
           ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct: 683 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 740

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.
Homo sapiens (taxid: 9606)

>sp|O97758|ZO1_CANFA Tight junction protein ZO-1 OS=Canis familiaris GN=TJP1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query: 8   KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
           ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct: 682 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 739

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.

Canis familiaris (taxid: 9615)

>sp|P39447|ZO1_MOUSE Tight junction protein ZO-1 OS=Mus musculus GN=Tjp1 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 46/57 (80%)

Query: 9   KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
           + SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct: 684 RSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 740

The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.

Mus musculus (taxid: 10090)

>sp|Q9Z0U1|ZO2_MOUSE Tight junction protein ZO-2 OS=Mus musculus GN=Tjp2 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 56/82 (68%), Gaps = 4/82 (4%)

Query: 3   EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK 62
           +++ S+K SG++RL+ +R ++++ +H LLD+TP AVD LNY Q++PIVIF   +++  VK
Sbjct: 745 KDAGSEKSSGVVRLNTVRQIIEQDKHALLDVTPKAVDLLNYTQWFPIVIFFNPDSRQGVK 804

Query: 63  ELRAGIPKYHTNLARQRSRVLF 84
            +R  +    +  + + SR LF
Sbjct: 805 TIRQRL----SPTSNKSSRKLF 822

Plays a role in tight junctions and adherens junctions.

Mus musculus (taxid: 10090)

>sp|Q95168|ZO2_CANFA Tight junction protein ZO-2 OS=Canis familiaris GN=TJP2 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 48/63 (76%)

Query: 3   EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK 62
           +++ S+K SG++RL+ +R ++++ +H LLD+TP AVD LNY Q++PIVIF   +++  VK
Sbjct: 747 KDAGSEKSSGVVRLNTVRQIIEQDKHALLDVTPKAVDLLNYTQWFPIVIFFNPDSRQGVK 806

Query: 63  ELR 65
            +R
Sbjct: 807 TMR 809

Plays a role in tight junctions and adherens junctions.

Canis familiaris (taxid: 9615)

>sp|Q9UDY2|ZO2_HUMAN Tight junction protein ZO-2 OS=Homo sapiens GN=TJP2 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 48/63 (76%)

Query: 3   EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK 62
           +++ S+K +G++RL+ +R ++++ +H LLD+TP AVD LNY Q++PIVIF   +++  VK
Sbjct: 763 KDAGSEKSTGVVRLNTVRQIIEQDKHALLDVTPKAVDLLNYTQWFPIVIFFNPDSRQGVK 822

Query: 63  ELR 65
            +R
Sbjct: 823 TMR 825

Plays a role in tight junctions and adherens junctions.

Homo sapiens (taxid: 9606)

>sp|Q9QXY1|ZO3_MOUSE Tight junction protein ZO-3 OS=Mus musculus GN=Tjp3 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 6/83 (7%)

Query: 2   MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNV 61
           M  +DS   S II+L  +R + +R +H LLD+TP+A++RLNY Q+YPIVIF   E++  +
Sbjct: 642 MSRTDSP--SKIIKLDTVRVIAERDKHALLDVTPSAIERLNYVQYYPIVIFCAPESRPAL 699

Query: 62  KELRAGIPKYHTNLARQRSRVLF 84
           K LR    ++    +R+ SR L+
Sbjct: 700 KALR----EWLAPASRRSSRRLY 718

Mus musculus (taxid: 10090)

>sp|O62683|ZO3_CANFA Tight junction protein ZO-3 OS=Canis familiaris GN=TJP3 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 51/74 (68%), Gaps = 4/74 (5%)

Query: 11  SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK 70
           S II+L  +R + ++ +H LLD+TP+AV+RLNY Q+YPIV+F   E+++ +K LR    +
Sbjct: 645 SKIIKLDTVRVIAEKNKHALLDVTPSAVERLNYVQYYPIVVFCAPESRAALKALR----Q 700

Query: 71  YHTNLARQRSRVLF 84
           +    +R+ +R L+
Sbjct: 701 WLAPASRRSARRLY 714

Canis familiaris (taxid: 9615)

>sp|O95049|ZO3_HUMAN Tight junction protein ZO-3 OS=Homo sapiens GN=TJP3 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 11  SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK 70
           S II+L  +R + ++ +H LLD+TP+A++RLNY Q+YPIV+F   E++  +K LR    +
Sbjct: 670 SKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALR----Q 725

Query: 71  YHTNLARQRSRVLF 84
           +    +R+ +R L+
Sbjct: 726 WLAPASRRSTRRLY 739

Homo sapiens (taxid: 9606)

>sp|Q8TDM6|DLG5_HUMAN Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 6    DSKKCSG---IIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK 62
            D K+ SG   +  +++I+++ ++ RH LLDI P+A++RL++   YPIVIF+  ++  ++K
Sbjct: 1790 DYKRRSGHFDVTTVASIKEITEKNRHCLLDIAPHAIERLHHMHIYPIVIFIHYKSAKHIK 1849

Query: 63   ELRAGI 68
            E R  I
Sbjct: 1850 EQRDPI 1855

May play a role at the plasma membrane in the maintenance of the structure of epithelial cells and in the transmission of extracellular signals to the membrane and cytoskeleton.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
322784682	201	hypothetical protein SINV_14084 [Solenop	0.207	0.343	0.774	3e-23
307213715	1250	Tight junction protein ZO-1 [Harpegnatho	0.210	0.056	0.763	3e-23
332030048	1292	Tight junction protein ZO-1 [Acromyrmex	0.210	0.054	0.763	4e-23
322784679	234	hypothetical protein SINV_10211 [Solenop	0.207	0.294	0.774	6e-23
350409418	1181	PREDICTED: tight junction protein ZO-1-l	0.150	0.042	0.838	7e-23
340713561	1181	PREDICTED: tight junction protein ZO-1-l	0.150	0.042	0.838	7e-23
383859496	1184	PREDICTED: tight junction protein ZO-1-l	0.150	0.042	0.838	7e-23
345479005	1559	PREDICTED: tight junction protein ZO-1-l	0.132	0.028	0.764	7e-23
328697077	1246	PREDICTED: tight junction protein ZO-2-l	0.144	0.038	0.812	8e-23
328697075	1242	PREDICTED: tight junction protein ZO-2-l	0.144	0.038	0.812	8e-23

>gi|322784682|gb|EFZ11536.1| hypothetical protein SINV_14084 [Solenopsis invicta]

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 2/71 (2%)

Query: 2  MEESDSK--KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKS 59
          ME+   K  K SGIIRLSAIR++MDRG+H LLDITPNAVDRLNYAQFYPIVIFL+AETK 
Sbjct: 11 MEDGTGKNTKTSGIIRLSAIREVMDRGKHALLDITPNAVDRLNYAQFYPIVIFLKAETKQ 70

Query: 60 NVKELRAGIPK 70
           +KE+RAGIPK
Sbjct: 71 IIKEMRAGIPK 81

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213715|gb|EFN89064.1| Tight junction protein ZO-1 [Harpegnathos saltator]

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 62/72 (86%), Gaps = 2/72 (2%)

Query: 1   MMEESDSK--KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETK 58
            ME+   K  K SGIIRLSAIR++MDRG+H LLDITPNAVDRLNYAQFYPIVIFL+AETK
Sbjct: 614 QMEDGSGKNTKTSGIIRLSAIREVMDRGKHALLDITPNAVDRLNYAQFYPIVIFLKAETK 673

Query: 59  SNVKELRAGIPK 70
             +KE+RAGIPK
Sbjct: 674 QVIKEMRAGIPK 685

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030048|gb|EGI69873.1| Tight junction protein ZO-1 [Acromyrmex echinatior]

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 62/72 (86%), Gaps = 2/72 (2%)

Query: 1   MMEESDSK--KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETK 58
            ME+   K  K SGIIRLSAIR++MDRG+H LLDITPNAVDRLNYAQFYPIVIFL+AETK
Sbjct: 621 QMEDGTGKNTKTSGIIRLSAIREVMDRGKHALLDITPNAVDRLNYAQFYPIVIFLKAETK 680

Query: 59  SNVKELRAGIPK 70
             +KE+RAGIPK
Sbjct: 681 QVIKEMRAGIPK 692

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784679|gb|EFZ11533.1| hypothetical protein SINV_10211 [Solenopsis invicta]

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 62/71 (87%), Gaps = 2/71 (2%)

Query: 2   MEESDSK--KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKS 59
           ME+   K  K SGIIRLSAIR++MDRG+H LLDITPNAVDRLNYAQFYPIVIFL+AETK 
Sbjct: 164 MEDGTGKNTKTSGIIRLSAIREVMDRGKHALLDITPNAVDRLNYAQFYPIVIFLKAETKQ 223

Query: 60  NVKELRAGIPK 70
            +KE+RAGIPK
Sbjct: 224 IIKEMRAGIPK 234

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409418|ref|XP_003488729.1| PREDICTED: tight junction protein ZO-1-like [Bombus impatiens]

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 58/62 (93%)

Query: 9   KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGI 68
           K SGIIRLSAIR++MDRG+H LLDITPNAVDRLNYAQFYPIVIFL+AETK  +KE+RAGI
Sbjct: 597 KSSGIIRLSAIREVMDRGKHALLDITPNAVDRLNYAQFYPIVIFLKAETKQIIKEMRAGI 656

Query: 69  PK 70
           PK
Sbjct: 657 PK 658

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713561|ref|XP_003395310.1| PREDICTED: tight junction protein ZO-1-like [Bombus terrestris]

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 58/62 (93%)

Query: 9   KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGI 68
           K SGIIRLSAIR++MDRG+H LLDITPNAVDRLNYAQFYPIVIFL+AETK  +KE+RAGI
Sbjct: 597 KSSGIIRLSAIREVMDRGKHALLDITPNAVDRLNYAQFYPIVIFLKAETKQIIKEMRAGI 656

Query: 69  PK 70
           PK
Sbjct: 657 PK 658

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859496|ref|XP_003705230.1| PREDICTED: tight junction protein ZO-1-like [Megachile rotundata]

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 58/62 (93%)

Query: 9   KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGI 68
           K SGIIRLSAIR++MDRG+H LLDITPNAVDRLNYAQFYPIVIFL+AETK  +KE+RAGI
Sbjct: 597 KSSGIIRLSAIREVMDRGKHALLDITPNAVDRLNYAQFYPIVIFLKAETKQIIKEMRAGI 656

Query: 69  PK 70
           PK
Sbjct: 657 PK 658

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479005|ref|XP_001607015.2| PREDICTED: tight junction protein ZO-1-like [Nasonia vitripennis]

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 59/68 (86%)

Query: 3   EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK 62
           E   S K SGIIRLSAIR++MDRG+H LLDITPNAVDRLNYAQFYPIVIFL+AETK  +K
Sbjct: 815 EGGKSTKSSGIIRLSAIREVMDRGKHALLDITPNAVDRLNYAQFYPIVIFLKAETKQMIK 874

Query: 63  ELRAGIPK 70
           E+R G+PK
Sbjct: 875 EMRVGVPK 882

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697077|ref|XP_003240224.1| PREDICTED: tight junction protein ZO-2-like isoform 2 [Acyrthosiphon pisum]

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 58/64 (90%)

Query: 7   SKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRA 66
           SKK SGIIRLSAIRD+MDRG+H LLD+TPNAVDRLNYAQFYPIVI LRA+ K  +KELRA
Sbjct: 664 SKKISGIIRLSAIRDIMDRGKHALLDVTPNAVDRLNYAQFYPIVIMLRADNKQVIKELRA 723

Query: 67  GIPK 70
           G+PK
Sbjct: 724 GLPK 727

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697075|ref|XP_001950858.2| PREDICTED: tight junction protein ZO-2-like isoform 1 [Acyrthosiphon pisum]

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 58/64 (90%)

Query: 7   SKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRA 66
           SKK SGIIRLSAIRD+MDRG+H LLD+TPNAVDRLNYAQFYPIVI LRA+ K  +KELRA
Sbjct: 660 SKKISGIIRLSAIRDIMDRGKHALLDVTPNAVDRLNYAQFYPIVIMLRADNKQVIKELRA 719

Query: 67  GIPK 70
           G+PK
Sbjct: 720 GLPK 723

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
FB|FBgn0262614	2090	pyd "polychaetoid" [Drosophila	0.189	0.030	0.703	3.3e-17
ZFIN|ZDB-GENE-090313-308	1689	si:dkey-33l14.1 "si:dkey-33l14	0.228	0.044	0.493	4.6e-12
UNIPROTKB|F1SNQ1	1017	F1SNQ1 "Uncharacterized protei	0.174	0.057	0.586	5.8e-12
UNIPROTKB|I3L5H6	948	I3L5H6 "Uncharacterized protei	0.174	0.061	0.586	8.4e-12
ZFIN|ZDB-GENE-031001-2	1699	tjp1a "tight junction protein	0.213	0.041	0.521	8.6e-12
UNIPROTKB|G5E9E7	1692	TJP1 "Tight junction protein 1	0.174	0.034	0.586	1.7e-11
UNIPROTKB|F1NH05	1694	TJP1 "Uncharacterized protein"	0.174	0.034	0.603	1.8e-11
UNIPROTKB|F1N2D3	1712	TJP1 "Uncharacterized protein"	0.174	0.033	0.586	1.8e-11
UNIPROTKB|Q07157	1748	TJP1 "Tight junction protein Z	0.174	0.033	0.586	1.8e-11
UNIPROTKB|G3V1L9	1768	TJP1 "Tight junction protein 1	0.174	0.032	0.586	1.8e-11

FB|FBgn0262614 pyd "polychaetoid" [Drosophila melanogaster (taxid:7227)]

 Score = 237 (88.5 bits), Expect = 3.3e-17, P = 3.3e-17
 Identities = 45/64 (70%), Positives = 55/64 (85%)

Query:     7 SKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRA 66
             S KC  I+RLS IRD+MDRG+H LLDITPNAVDRLNYAQFYP+VIFL+ ++K  +K+LR 
Sbjct:   670 SGKCR-IVRLSNIRDVMDRGKHALLDITPNAVDRLNYAQFYPVVIFLKTDSKHVIKQLRH 728

Query:    67 GIPK 70
             G+PK
Sbjct:   729 GLPK 732

GO:0004385 "guanylate kinase activity" evidence=ISS;NAS

GO:0007254 "JNK cascade" evidence=NAS

GO:0005912 "adherens junction" evidence=IDA;NAS;TAS

GO:0007391 "dorsal closure" evidence=NAS;TAS

GO:0046328 "regulation of JNK cascade" evidence=NAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0035156 "fusion cell fate specification" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IGI;IMP

GO:0030424 "axon" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0005917 "nephrocyte diaphragm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0050839 "cell adhesion molecule binding" evidence=IPI

GO:0036059 "nephrocyte diaphragm assembly" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0060439 "trachea morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

ZFIN|ZDB-GENE-090313-308 si:dkey-33l14.1 "si:dkey-33l14.1" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 38/77 (49%), Positives = 54/77 (70%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG 67
             ++ SGIIRL  I+ ++DR +H +LDITPNAVDRLNYAQ+YPIV+FL  ++K  VK +R  
Sbjct:   706 QRSSGIIRLHTIKQIIDRDKHAVLDITPNAVDRLNYAQWYPIVVFLNPDSKQGVKNMRTR 765

Query:    68 I-PKYHTNLARQRSRVL 83
             + P+   +  +   R L
Sbjct:   766 LCPESRKSARKLYERAL 782

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1SNQ1 F1SNQ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
             ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct:    11 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 68

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|I3L5H6 I3L5H6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
             ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct:   745 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 802

GO:0005923 "tight junction" evidence=IEA

ZFIN|ZDB-GENE-031001-2 tjp1a "tight junction protein 1a" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
 Identities = 37/71 (52%), Positives = 51/71 (71%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG 67
             ++ SGIIRL  I+ ++DR +H +LDITPNAVDRLNYAQ+YPIV+FL  ++K  VK +R  
Sbjct:   759 QRSSGIIRLHTIKQIIDRDKHAVLDITPNAVDRLNYAQWYPIVVFLNPDSKQGVKNMRTR 818

Query:    68 IPKYHTNLARQ 78
             +       AR+
Sbjct:   819 LCSESRKSARK 829

GO:0005923 "tight junction" evidence=IEA;IDA

UNIPROTKB|G5E9E7 TJP1 "Tight junction protein 1 (Zona occludens 1), isoform CRA_e" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
             ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct:   687 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 744

GO:0005923 "tight junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|F1NH05 TJP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
             ++ SGIIRL  I+ ++DR +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct:   688 QRSSGIIRLHTIKQIIDRDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 745

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1N2D3 TJP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
             ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct:   652 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 709

GO:0046581 "intercellular canaliculus" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|Q07157 TJP1 "Tight junction protein ZO-1" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
             ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct:   683 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 740

GO:0005516 "calmodulin binding" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043116 "negative regulation of vascular permeability" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0046581 "intercellular canaliculus" evidence=IEA

GO:0071000 "response to magnetism" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0005921 "gap junction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005923 "tight junction" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:1901350 "cell-cell signaling involved in cell-cell junction organization" evidence=NAS

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0043296 "apical junction complex" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0007043 "cell-cell junction assembly" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006921 "cellular component disassembly involved in execution phase of apoptosis" evidence=TAS

GO:0035329 "hippo signaling cascade" evidence=TAS

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|G3V1L9 TJP1 "Tight junction protein 1 (Zona occludens 1), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query:     8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
             ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct:   683 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 740

GO:0005923 "tight junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	333
cd11859	62	cd11859, SH3_ZO, Src homology 3 domain of the Tigh	4e-22
cd11859	62	cd11859, SH3_ZO, Src homology 3 domain of the Tigh	6e-21
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	4e-11
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-09
cd12026	65	cd12026, SH3_ZO-1, Src homology 3 domain of the Ti	9e-09
cd12028	65	cd12028, SH3_ZO-3, Src homology 3 domain of the Ti	9e-09
cd12026	65	cd12026, SH3_ZO-1, Src homology 3 domain of the Ti	1e-08
cd12028	65	cd12028, SH3_ZO-3, Src homology 3 domain of the Ti	3e-08
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	3e-08
cd12027	63	cd12027, SH3_ZO-2, Src homology 3 domain of the Ti	3e-07
cd12027	63	cd12027, SH3_ZO-2, Src homology 3 domain of the Ti	9e-07
cd11860	63	cd11860, SH3_DLG5, Src homology 3 domain of Disks	1e-06
cd11860	63	cd11860, SH3_DLG5, Src homology 3 domain of Disks	2e-06
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	2e-05
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-05
smart00326	56	smart00326, SH3, Src homology 3 domains	6e-05
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	1e-04
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	2e-04
smart00326	56	smart00326, SH3, Src homology 3 domains	3e-04
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	8e-04
cd11885	55	cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 d	9e-04
cd11885	55	cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 d	9e-04
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	0.002
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	0.002
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	0.004
pfam00018	47	pfam00018, SH3_1, SH3 domain	0.004
pfam00018	47	pfam00018, SH3_1, SH3 domain	0.004

>gnl|CDD|212793 cd11859, SH3_ZO, Src homology 3 domain of the Tight junction proteins, Zonula occludens (ZO) proteins

 Score = 87.7 bits (218), Expect = 4e-22
 Identities = 27/42 (64%), Positives = 36/42 (85%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
           RTHF+Y++P KGE+SF+KG+VFHV+DTL+ G VGSWQ  R+ 
Sbjct: 3   RTHFDYEKPAKGELSFKKGEVFHVVDTLYQGTVGSWQAVRVG 44

ZO proteins are scaffolding proteins that associate with each other and with other proteins of the tight junction, zonula adherens, and gap junctions. They play roles in regulating cytoskeletal dynamics at these cell junctions. They are considered members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. Vertebrates contain three ZO proteins (ZO-1, ZO-2, and ZO-3) with redundant and non-redundant roles. They contain three PDZ domains, followed by SH3 and GuK domains; in addition, ZO-1 and ZO-2 contains a proline-rich (PR) actin binding domain at the C-terminus while ZO-3 contains this PR domain between the second and third PDZ domains. The C-terminal regions of the three ZO proteins are unique. The SH3 domain of ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212793 cd11859, SH3_ZO, Src homology 3 domain of the Tight junction proteins, Zonula occludens (ZO) proteins

 Score = 84.3 bits (209), Expect = 6e-21
 Identities = 27/43 (62%), Positives = 36/43 (83%)

Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
           THF+Y++P KGE+SF+KG+VFHV+DTL+ G VGSWQ  R+  N
Sbjct: 4   THFDYEKPAKGELSFKKGEVFHVVDTLYQGTVGSWQAVRVGRN 46

ZO proteins are scaffolding proteins that associate with each other and with other proteins of the tight junction, zonula adherens, and gap junctions. They play roles in regulating cytoskeletal dynamics at these cell junctions. They are considered members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. Vertebrates contain three ZO proteins (ZO-1, ZO-2, and ZO-3) with redundant and non-redundant roles. They contain three PDZ domains, followed by SH3 and GuK domains; in addition, ZO-1 and ZO-2 contains a proline-rich (PR) actin binding domain at the C-terminus while ZO-3 contains this PR domain between the second and third PDZ domains. The C-terminal regions of the three ZO proteins are unique. The SH3 domain of ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 11  SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRA 55
                   IR + ++G+H LLDI P  V +L  AQ YPIVIF+  
Sbjct: 68  YYGTSKETIRQVAEKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAP 112

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F +  G   G  IFV  V         A    L  GD +L++N    +G++ +EA +L+ 
Sbjct: 16  FSLRGGKDSGGGIFVSRVEP----GGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLK 71

Query: 270 SSKEKLSLTIR 280
           +S ++++LT+R
Sbjct: 72  NSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|212959 cd12026, SH3_ZO-1, Src homology 3 domain of the Tight junction protein, Zonula occludens protein 1

 Score = 51.2 bits (122), Expect = 9e-09
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
           RTHF Y++     +SF KG+VF V+DTL+NG +GSW   RI
Sbjct: 6   RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 46

ZO-1 is a scaffolding protein that associates with other ZO proteins and other proteins of the tight junction, zonula adherens, and gap junctions. ZO proteins play roles in regulating cytoskeletal dynamics at these cell junctions. ZO-1 plays an essential role in embryonic development. It regulates the assembly and dynamics of the cortical cytoskeleton at cell-cell junctions. It is considered a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. The C-terminal region of ZO-1 is the largest of the three ZO proteins and contains an actin-binding region and domains of unknown function designated alpha and ZU5. The SH3 domain of ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212961 cd12028, SH3_ZO-3, Src homology 3 domain of the Tight junction protein, Zonula occludens protein 3

 Score = 51.0 bits (122), Expect = 9e-09
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
           RTHF+Y+      +SF +G+VFHV+DT+H G +GSW   R+
Sbjct: 6   RTHFDYEPDPPSGLSFTRGEVFHVLDTMHRGKLGSWLAVRM 46

ZO-3 is a scaffolding protein that associates with other ZO proteins and other proteins of the tight junction, zonula adherens, and gap junctions. ZO proteins play roles in regulating cytoskeletal dynamics at these cell junctions. ZO-3 is critical for epidermal barrier function. It regulates cyclin D1-dependent cell proliferation. It is considered a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. The C-terminal region of ZO-3 is the smallest of the three ZO proteins. The SH3 domain of the related protein ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212959 cd12026, SH3_ZO-1, Src homology 3 domain of the Tight junction protein, Zonula occludens protein 1

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
           THF Y++     +SF KG+VF V+DTL+NG +GSW   RI  N
Sbjct: 7   THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 49

ZO-1 is a scaffolding protein that associates with other ZO proteins and other proteins of the tight junction, zonula adherens, and gap junctions. ZO proteins play roles in regulating cytoskeletal dynamics at these cell junctions. ZO-1 plays an essential role in embryonic development. It regulates the assembly and dynamics of the cortical cytoskeleton at cell-cell junctions. It is considered a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. The C-terminal region of ZO-1 is the largest of the three ZO proteins and contains an actin-binding region and domains of unknown function designated alpha and ZU5. The SH3 domain of ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212961 cd12028, SH3_ZO-3, Src homology 3 domain of the Tight junction protein, Zonula occludens protein 3

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
           THF+Y+      +SF +G+VFHV+DT+H G +GSW   R+  +
Sbjct: 7   THFDYEPDPPSGLSFTRGEVFHVLDTMHRGKLGSWLAVRMGRD 49

ZO-3 is a scaffolding protein that associates with other ZO proteins and other proteins of the tight junction, zonula adherens, and gap junctions. ZO proteins play roles in regulating cytoskeletal dynamics at these cell junctions. ZO-3 is critical for epidermal barrier function. It regulates cyclin D1-dependent cell proliferation. It is considered a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. The C-terminal region of ZO-3 is the smallest of the three ZO proteins. The SH3 domain of the related protein ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F +  G   G  + V  V       + A    L  GDV+L++N    +G++  EA  L+ 
Sbjct: 16  FSLVGGKDEGGGVVVSSVVP----GSPAAKAGLRVGDVILEVNGTSVEGLTHLEAVDLLK 71

Query: 270 SSKEKLSLTIRR 281
            +  K++LT+ R
Sbjct: 72  KAGGKVTLTVLR 83

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|212960 cd12027, SH3_ZO-2, Src homology 3 domain of the Tight junction protein, Zonula occludens protein 2

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
           RTHF Y++     ++F +G++F V+DTL++G +G+W   RI
Sbjct: 7   RTHFEYEKELPQSLAFTRGEIFRVVDTLYDGKLGNWLAVRI 47

ZO-2 is a scaffolding protein that associates with other ZO proteins and other proteins of the tight junction, zonula adherens, and gap junctions. ZO proteins play roles in regulating cytoskeletal dynamics at these cell junctions. ZO-2 plays an essential role in embryonic development. It is critical for the blood-testis barrier integrity and male fertility. It also regulates the expression of cyclin D1 and cell proliferation. It is considered a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. The C-terminal region of ZO-2 contains an actin-binding region and a domain of unknown function designated beta. The SH3 domain of the related protein ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212960 cd12027, SH3_ZO-2, Src homology 3 domain of the Tight junction protein, Zonula occludens protein 2

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 16/42 (38%), Positives = 29/42 (69%)

Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAH 163
           THF Y++     ++F +G++F V+DTL++G +G+W   RI +
Sbjct: 8   THFEYEKELPQSLAFTRGEIFRVVDTLYDGKLGNWLAVRIGN 49

ZO-2 is a scaffolding protein that associates with other ZO proteins and other proteins of the tight junction, zonula adherens, and gap junctions. ZO proteins play roles in regulating cytoskeletal dynamics at these cell junctions. ZO-2 plays an essential role in embryonic development. It is critical for the blood-testis barrier integrity and male fertility. It also regulates the expression of cyclin D1 and cell proliferation. It is considered a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. The C-terminal region of ZO-2 contains an actin-binding region and a domain of unknown function designated beta. The SH3 domain of the related protein ZO-1 has been shown to bind ZONAB, ZAK, afadin, and Galpha12. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212794 cd11860, SH3_DLG5, Src homology 3 domain of Disks Large homolog 5

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 166 ISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
           + A   R+  N     + E+SF+K D+ +V +T+ NGV G W+ + +D
Sbjct: 2   VRALFDRSAEN-----EDELSFKKDDILYVDNTMFNGVFGQWRAWLVD 44

DLG5 is a multifunctional scaffold protein that is located at sites of cell-cell contact and is involved in the maintenance of cell shape and polarity. Mutations in the DLG5 gene are associated with Crohn's disease (CD) and inflammatory bowel disease (IBD). DLG5 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG5 contains 4 PDZ domains as well as an N-terminal domain of unknown function. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212794 cd11860, SH3_DLG5, Src homology 3 domain of Disks Large homolog 5

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 130 EKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
            + E+SF+K D+ +V +T+ NGV G W+ + +   
Sbjct: 12  NEDELSFKKDDILYVDNTMFNGVFGQWRAWLVDEE 46

DLG5 is a multifunctional scaffold protein that is located at sites of cell-cell contact and is involved in the maintenance of cell shape and polarity. Mutations in the DLG5 gene are associated with Crohn's disease (CD) and inflammatory bowel disease (IBD). DLG5 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG5 contains 4 PDZ domains as well as an N-terminal domain of unknown function. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQV 209
           R  F+Y   +  E+S +KGDV  V+D       G W+ 
Sbjct: 3   RVIFDYVATDPNELSLKKGDVVKVLDK---DDNGWWEG 37

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F +  G      IFV EV        +A    L EGD +L IN    + +S  EA   + 
Sbjct: 14  FSLVGGSDGDPGIFVSEVLP----GGAAEAGGLQEGDRILSINGQDLENLSHDEAVLALK 69

Query: 270 SSKEKLSLTIR 280
            S  +++LTI 
Sbjct: 70  GSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
           R  ++Y   +  E+SF+KGD+  V++   +G
Sbjct: 6   RALYDYTAQDPDELSFKKGDIITVLEKSDDG 36

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQV 158
             F+Y   +  E+S +KGDV  V+D       G W+ 
Sbjct: 4   VIFDYVATDPNELSLKKGDVVKVLDK---DDNGWWEG 37

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 206 SWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEAR 265
               F I  G   G  + V  V     + A      L  GDV+L +N      +++++  
Sbjct: 1   GGLGFSIRGGTEGG--VVVLSVEP--GSPAERA--GLQAGDVILAVNGTDVKNLTLEDVA 54

Query: 266 KLI-DSSKEKLSLTIR 280
           +L+     EK++LT+R
Sbjct: 55  ELLKKEVGEKVTLTVR 70

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
             ++Y   +  E+SF+KGD+  V++   +G
Sbjct: 7   ALYDYTAQDPDELSFKKGDIITVLEKSDDG 36

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 16  LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL 64
             AI  + + G+  +LD+    V +L  A+  PI +F++  +   ++  
Sbjct: 83  KEAIEQIAESGKICILDVDIQGVKQLRKAELSPISVFIKPPSLKVLQRR 131

Length = 183

>gnl|CDD|212818 cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
            +++  E GE+SFR+GD   +I  L  G
Sbjct: 6   MDFEGVEPGELSFRQGDSIEIIGDLIPG 33

This subfamily is composed of vertebrate SH3TC proteins and hypothetical fungal proteins containing BAR and SH3 domains. Mammals contain two SH3TC proteins, SH3TC1 and SH3TC2. The function of SH3TC1 is unknown. SH3TC2 is localized in Schwann cells in the peripheral nervous system, where it interacts with Rab11 and plays a role in peripheral nerve myelination. Mutations in SH3TC2 are associated with Charcot-Marie-Tooth disease type 4C, a severe hereditary peripheral neuropathy with symptoms that include progressive scoliosis, delayed age of walking, muscular atrophy, distal weakness, and reduced nerve conduction velocity. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212818 cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
            +++  E GE+SFR+GD   +I  L  G
Sbjct: 6   MDFEGVEPGELSFRQGDSIEIIGDLIPG 33

This subfamily is composed of vertebrate SH3TC proteins and hypothetical fungal proteins containing BAR and SH3 domains. Mammals contain two SH3TC proteins, SH3TC1 and SH3TC2. The function of SH3TC1 is unknown. SH3TC2 is localized in Schwann cells in the peripheral nervous system, where it interacts with Rab11 and plays a role in peripheral nerve myelination. Mutations in SH3TC2 are associated with Charcot-Marie-Tooth disease type 4C, a severe hereditary peripheral neuropathy with symptoms that include progressive scoliosis, delayed age of walking, muscular atrophy, distal weakness, and reduced nerve conduction velocity. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 157
           F++D  E GE+ FR+GD   V+D   N     W+
Sbjct: 6   FDFDPQEDGELGFRRGDFIEVMD---NSDPNWWK 36

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 208
           F++D  E GE+ FR+GD   V+D   N     W+
Sbjct: 6   FDFDPQEDGELGFRRGDFIEVMD---NSDPNWWK 36

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
           R  ++Y+  +  E+SF+KGD+  V++   +G
Sbjct: 3   RALYDYEAQDDDELSFKKGDIITVLEKDDDG 33

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
           ++Y   E  E+SF+KGD+  V++   +G
Sbjct: 4   YDYTAREPDELSFKKGDIIIVLEKSDDG 31

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
           ++Y   E  E+SF+KGD+  V++   +G
Sbjct: 4   YDYTAREPDELSFKKGDIIIVLEKSDDG 31

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
KOG3580|consensus	1027		99.96
KOG0708|consensus	359		99.72
KOG3209|consensus	984		99.66
KOG0609|consensus	542		99.62
KOG3209|consensus	984		99.61
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.29
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.23
KOG3580|consensus	1027		99.21
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.17
PRK14737	186	gmk guanylate kinase; Provisional	98.88
KOG3550|consensus	207		98.83
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.79
PLN02772	398	guanylate kinase	98.79
KOG3550|consensus	207		98.72
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.63
KOG1892|consensus	1629		98.58
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.57
PRK10942	473	serine endoprotease; Provisional	98.51
PRK10139	455	serine endoprotease; Provisional	98.49
KOG0707|consensus	231		98.49
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.48
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.45
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.31
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.13
KOG3571|consensus	626		98.09
KOG3553|consensus	124		98.06
KOG3551|consensus	506		98.04
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.03
PRK14738	206	gmk guanylate kinase; Provisional	97.98
KOG3605|consensus	829		97.95
KOG3549|consensus	505		97.84
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	97.74
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	97.71
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.69
KOG3571|consensus	626		97.65
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.65
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	97.63
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	97.62
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.62
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	97.61
KOG3552|consensus	1298		97.61
KOG3553|consensus	124		97.56
KOG3551|consensus	506		97.54
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.51
KOG3651|consensus	429		97.49
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.45
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	97.29
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.23
KOG3606|consensus	358		97.18
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.14
KOG0609|consensus	542		97.12
PRK00300	205	gmk guanylate kinase; Provisional	97.08
KOG3549|consensus	505		97.03
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.02
PLN00049	389	carboxyl-terminal processing protease; Provisional	96.97
KOG1892|consensus	1629		96.95
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	96.93
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	96.7
PRK11186	667	carboxy-terminal protease; Provisional	96.67
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	96.55
KOG3605|consensus	829		96.36
KOG4371|consensus	1332		96.32
PRK10139	455	serine endoprotease; Provisional	96.17
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	96.06
KOG3542|consensus	1283		96.03
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	95.63
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	95.61
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	95.54
PRK10942	473	serine endoprotease; Provisional	95.47
PRK10898	353	serine endoprotease; Provisional	95.12
PRK10779	449	zinc metallopeptidase RseP; Provisional	95.07
PRK09681	276	putative type II secretion protein GspC; Provision	95.06
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	94.87
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	94.85
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	94.71
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	93.2
PRK11186	667	carboxy-terminal protease; Provisional	92.97
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	92.68
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	91.82
KOG3552|consensus	1298		91.53
PLN00049	389	carboxyl-terminal processing protease; Provisional	91.49
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	91.08
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	91.08
KOG3606|consensus	358		90.82
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	90.81
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	90.11
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	90.01
COG3031	275	PulC Type II secretory pathway, component PulC [In	89.46
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	88.44
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	88.19
KOG3938|consensus	334		87.93
PRK10898	353	serine endoprotease; Provisional	87.63
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	87.51
KOG3651|consensus	429		87.18
COG3975	558	Predicted protease with the C-terminal PDZ domain	86.32
KOG1421|consensus	955		86.21
COG1105	310	FruK Fructose-1-phosphate kinase and related fruct	85.37
KOG3129|consensus	231		84.72
KOG0606|consensus	1205		84.65
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	83.97
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	83.38
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	82.85
KOG4407|consensus	1973		82.54
PRK09681	276	putative type II secretion protein GspC; Provision	82.43
KOG1421|consensus	955		81.21

>KOG3580|consensus

Probab=99.96  E-value=4.1e-29  Score=252.08  Aligned_cols=187  Identities=28%  Similarity=0.361  Sum_probs=145.5

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+.||||+|+||+|||||.|++.+|+||+|.||         |||+|.|  +.||+ ++||++++.+|.  +|++.||.
T Consensus        17 dp~rGFGIAiSGGRDnPhf~~getSiViSDVlpG---------GPAeG~L--QenDrvvMVNGvsMenv~haFAvQqLrk   85 (1027)
T KOG3580|consen   17 DPKRGFGIAISGGRDNPHFENGETSIVISDVLPG---------GPAEGLL--QENDRVVMVNGVSMENVLHAFAVQQLRK   85 (1027)
T ss_pred             CCCCcceeEeecCCCCCCccCCceeEEEeeccCC---------CCccccc--ccCCeEEEEcCcchhhhHHHHHHHHHHh
Confidence            4588999999999999999999999999999995         6889976  99999 699999999996  78999999


Q ss_pred             cCCceEEEEEEeeccC-----CCCCCC--C-----------CCCC---------------------------CCce----
Q psy9829         162 AHNCISAQIKRTHFNY-----DQPEKG--E-----------MSFR---------------------------KGDV----  192 (333)
Q Consensus       162 ~g~~v~L~v~R~~~~~-----~~p~~~--~-----------l~~~---------------------------~g~~----  192 (333)
                      +++...++|||.+...     +.|+.+  +           -.|.                           +++.    
T Consensus        86 sgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsr  165 (1027)
T KOG3580|consen   86 SGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR  165 (1027)
T ss_pred             hccceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccccccc
Confidence            9999999999965322     112100  0           0000                           0000    


Q ss_pred             eE---------------Eeee---c--CCCccc------cccceeecccccccCeEEEEEEccCcccCccccCCCCCCCC
Q psy9829         193 FH---------------VIDT---L--HNGVVG------SWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGD  246 (333)
Q Consensus       193 ~h---------------v~~s---l--~~~~lG------~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD  246 (333)
                      -|               ++.+   +  ..+..|      -|.--.++||+.|++.||||+|+..   |+|++||+||+||
T Consensus       166 er~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~---gLAardgnlqEGD  242 (1027)
T KOG3580|consen  166 ERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRT---GLAARDGNLQEGD  242 (1027)
T ss_pred             ccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhccc---chhhccCCccccc
Confidence            00               0000   0  000000      1111257899999999999999999   9999999999999


Q ss_pred             EEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         247 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       247 ~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      +||.|||..++|||+.+|+++|+.++.+|.|+|+|+..+
T Consensus       243 iiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~q  281 (1027)
T KOG3580|consen  243 IILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQ  281 (1027)
T ss_pred             EEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCc
Confidence            999999999999999999999999999999999998654

>KOG0708|consensus

Probab=99.72  E-value=4.5e-18  Score=165.77  Aligned_cols=97  Identities=27%  Similarity=0.442  Sum_probs=88.8

Q ss_pred             CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCc-chhhHHHHHh
Q psy9829           2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK-YHTNLARQRS   80 (333)
Q Consensus         2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~E-s~~ki~~rae   80 (333)
                      ++.+.+.+.++|||++||++|+++||||||||+++||++|+.++||||||||+|+|.++++++|.+.++ .+++++.++.
T Consensus       237 I~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~  316 (359)
T KOG0708|consen  237 IDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERAR  316 (359)
T ss_pred             eeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHhcccchHHHHHHHHHHH
Confidence            345566678999999999999999999999999999999999999999999999999999999988777 6789999999


Q ss_pred             hccccccceeeEEEeccc
Q psy9829          81 RVLFPVGSTFVGSVLGAR   98 (333)
Q Consensus        81 r~~qE~G~~~g~~i~gg~   98 (333)
                      ++++|++..|...|.||.
T Consensus       317 klEqe~~~~~t~vv~~~s  334 (359)
T KOG0708|consen  317 KLEQELDRYFTLVVQGGS  334 (359)
T ss_pred             HhHhhhhhceEEEEeccc
Confidence            999999999999998664

>KOG3209|consensus

Probab=99.66  E-value=5e-16  Score=160.20  Aligned_cols=176  Identities=16%  Similarity=0.191  Sum_probs=122.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.||||.|.--...|.-  +     |-.|++||         ||+..++|+|||+ ++||+.+..++.  .-++.+|.+|
T Consensus       764 NeGFGFVi~sS~~kp~s--g-----iGrIieGS---------PAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaG  827 (984)
T KOG3209|consen  764 NEGFGFVIMSSQNKPES--G-----IGRIIEGS---------PADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAG  827 (984)
T ss_pred             CCceeEEEEecccCCCC--C-----ccccccCC---------hhHhhccccccceEEEecCeeeeccCchhHHHHHHhcC
Confidence            78999999998888773  2     89999987         7899999999999 699999999986  4488999999


Q ss_pred             CceEEEEEEeeccCCCCC-CCC-C--CC----CCCceeEEe-------------eecCCCccccccce------------
Q psy9829         164 NCISAQIKRTHFNYDQPE-KGE-M--SF----RKGDVFHVI-------------DTLHNGVVGSWQVF------------  210 (333)
Q Consensus       164 ~~v~L~v~R~~~~~~~p~-~~~-l--~~----~~g~~~hv~-------------~sl~~~~lG~~~~~------------  210 (333)
                      .+|+|.|--.-...++++ .+. .  .|    .-+-.++++             ++......+.....            
T Consensus       828 lsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG  907 (984)
T KOG3209|consen  828 LSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERG  907 (984)
T ss_pred             ceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeecc
Confidence            999999742111111100 000 0  00    000001111             00000000111100            


Q ss_pred             eecccccccC------eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         211 RIDFGIILGN------KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       211 ~~d~G~~l~~------~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      ..-||+++.+      .+||.++.+.   |+|-+|||+++||.|+.|||.++.+|||..|..+||+-..++.|.+.|
T Consensus       908 ~kGFGFSiRGGreynM~LfVLRlAeD---GPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~  981 (984)
T KOG3209|consen  908 AKGFGFSIRGGREYNMDLFVLRLAED---GPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRR  981 (984)
T ss_pred             ccccceEeecccccccceEEEEeccC---CCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEecc
Confidence            1125666643      6999999999   999999999999999999999999999999999999988888777654

>KOG0609|consensus

Probab=99.62  E-value=3.2e-16  Score=158.35  Aligned_cols=95  Identities=21%  Similarity=0.343  Sum_probs=87.9

Q ss_pred             CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcC----------CCc
Q psy9829           1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG----------IPK   70 (333)
Q Consensus         1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~----------~~E   70 (333)
                      |+|.|++++++++|+++|||.|+++||+||||+.||++|.|++++|.||||||+||+++.++++|+.          .++
T Consensus       406 ~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d  485 (542)
T KOG0609|consen  406 FLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTD  485 (542)
T ss_pred             ceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCH
Confidence            7899999999999999999999999999999999999999999999999999999999999988763          233


Q ss_pred             -chhhHHHHHhhccccccceeeEEEe
Q psy9829          71 -YHTNLARQRSRVLFPVGSTFVGSVL   95 (333)
Q Consensus        71 -s~~ki~~raer~~qE~G~~~g~~i~   95 (333)
                       +..+|.++++++++.+|+.|.+.|.
T Consensus       486 ~~Lq~i~~eS~~ie~~yghyfD~iIv  511 (542)
T KOG0609|consen  486 EDLQEIIDESARIEQQYGHYFDLIIV  511 (542)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeEEEE
Confidence             4588999999999999999998886

>KOG3209|consensus

Probab=99.61  E-value=8.5e-15  Score=151.24  Aligned_cols=165  Identities=16%  Similarity=0.193  Sum_probs=117.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcch--hhhhhhh-c
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVG--SWQVFRI-A  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~--a~~alr~-~  162 (333)
                      -.||||-|.||...      +..|||-.|+|+|+         |+.++|||.||- +-|.++.|.|.++  +++.+.. +
T Consensus       659 esGFGFRiLGG~ep------~qpi~iG~Iv~lGa---------Ae~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AA  723 (984)
T KOG3209|consen  659 ESGFGFRILGGDEP------GQPIYIGAIVPLGA---------AEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAA  723 (984)
T ss_pred             ccccceEEecCCCC------CCeeEEeeeeeccc---------ccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHH
Confidence            67999999999642      46799999999765         566777799999 6899999999963  3444432 3


Q ss_pred             -CCceEEEEEEeeccCCCCCCCCCCCCCCc--eeEEeeecCCCccccccceeeccccccc-------CeEEEEEEccCcc
Q psy9829         163 -HNCISAQIKRTHFNYDQPEKGEMSFRKGD--VFHVIDTLHNGVVGSWQVFRIDFGIILG-------NKIFVKEVTHRLD  232 (333)
Q Consensus       163 -g~~v~L~v~R~~~~~~~p~~~~l~~~~g~--~~hv~~sl~~~~lG~~~~~~~d~G~~l~-------~~IfI~~I~~g~~  232 (333)
                       ..-|.|.|||...-.+. ..+..+. ++.  .+.|.  ++       ..-++-||+++-       ++  |-+|.+|  
T Consensus       724 rnghV~LtVRRkv~~~~~-~rsp~~s-~~~~~~yDV~--lh-------R~ENeGFGFVi~sS~~kp~sg--iGrIieG--  788 (984)
T KOG3209|consen  724 RNGHVNLTVRRKVRTGPA-RRSPRNS-AAPSGPYDVV--LH-------RKENEGFGFVIMSSQNKPESG--IGRIIEG--  788 (984)
T ss_pred             hcCceEEEEeeeeeeccc-cCCcccc-cCCCCCeeeE--Ee-------cccCCceeEEEEecccCCCCC--ccccccC--
Confidence             44599999985533221 1111100 111  12221  00       001233555442       23  8899999  


Q ss_pred             cCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         233 NNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       233 ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                       ++|++-|+|++||+|++|||.+.-+|||.+-+++||.+.-.|+|+|.=.
T Consensus       789 -SPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~  837 (984)
T KOG3209|consen  789 -SPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPP  837 (984)
T ss_pred             -ChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcCh
Confidence             9999999999999999999999999999999999999999999998543

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.29  E-value=1.8e-12  Score=115.23  Aligned_cols=95  Identities=23%  Similarity=0.327  Sum_probs=82.5

Q ss_pred             CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhh-hcCCCcchhhHHHHH
Q psy9829           1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL-RAGIPKYHTNLARQR   79 (333)
Q Consensus         1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~l-r~~~~Es~~ki~~ra   79 (333)
                      |+|...+...+++|+.++|++++++|||||||++++++++|+...++|++|||+|||.+.|++. +.+..++.+.+..+.
T Consensus        68 fie~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~  147 (183)
T PF00625_consen   68 FIEYGEYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERL  147 (183)
T ss_dssp             EEEEEEETTEEEEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHH
T ss_pred             EEEEeeecchhhhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHH
Confidence            3566677888999999999999999999999999999999999999999999999999998855 566656677888888


Q ss_pred             hhccccccce--eeEEEe
Q psy9829          80 SRVLFPVGST--FVGSVL   95 (333)
Q Consensus        80 er~~qE~G~~--~g~~i~   95 (333)
                      ++...+++..  |...|.
T Consensus       148 ~~~~~~~~~~~~fd~vi~  165 (183)
T PF00625_consen  148 ERAEKEFEHYNEFDYVIV  165 (183)
T ss_dssp             HHHHHHHGGGGGSSEEEE
T ss_pred             HHHHHHHhHhhcCCEEEE
Confidence            8888777766  888876

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>smart00072 GuKc Guanylate kinase homologues

Probab=99.23  E-value=1.1e-11  Score=110.68  Aligned_cols=96  Identities=24%  Similarity=0.362  Sum_probs=78.9

Q ss_pred             CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH
Q psy9829           1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR   79 (333)
Q Consensus         1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra   79 (333)
                      |+|...+.+++++|++++|++++++||+||||++++++++|+...++|++|||+|||.+.|+ +++.|..++.+.+.+|.
T Consensus        68 fve~~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl  147 (184)
T smart00072       68 FLEWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRL  147 (184)
T ss_pred             eEEEEEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            35666778899999999999999999999999999999999999999999999999998877 66667777777777777


Q ss_pred             hhcccccc--ceeeEEEec
Q psy9829          80 SRVLFPVG--STFVGSVLG   96 (333)
Q Consensus        80 er~~qE~G--~~~g~~i~g   96 (333)
                      +++..+..  ..|.+.|..
T Consensus       148 ~~a~~~~~~~~~fd~~I~n  166 (184)
T smart00072      148 AAAQKEAQEYHLFDYVIVN  166 (184)
T ss_pred             HHHHHHHhhhccCCEEEEC
Confidence            66655442  235555553

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>KOG3580|consensus

Probab=99.21  E-value=1.2e-11  Score=126.60  Aligned_cols=91  Identities=35%  Similarity=0.730  Sum_probs=81.5

Q ss_pred             cCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCc----chhhHHHHH
Q psy9829           4 ESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK----YHTNLARQR   79 (333)
Q Consensus         4 ~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~E----s~~ki~~ra   79 (333)
                      +.+++++.+++++++||+|+||.||++|||.|+||++|++.|+||||||+.|.|+..++.||.++..    +..++++++
T Consensus       665 dag~~~stg~irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr~SsRkLy~~a  744 (1027)
T KOG3580|consen  665 DAGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSRKSSRKLYDQA  744 (1027)
T ss_pred             cCCcccccceEEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccchhHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999998765    468888888


Q ss_pred             hhccccccceeeEEE
Q psy9829          80 SRVLFPVGSTFVGSV   94 (333)
Q Consensus        80 er~~qE~G~~~g~~i   94 (333)
                      .+....-.+-|...|
T Consensus       745 ~KL~K~~~HLFTaTI  759 (1027)
T KOG3580|consen  745 NKLKKTCAHLFTATI  759 (1027)
T ss_pred             HHHhhhchhheEeee
Confidence            887776666776655

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.17  E-value=4.3e-11  Score=92.82  Aligned_cols=57  Identities=30%  Similarity=0.492  Sum_probs=54.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .++||++|.++   ++|+++| |++||+|++|||+++.++++++++.+|+.+.+.|+|+|+
T Consensus        25 ~~~~V~~v~~~---~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~   81 (81)
T PF00595_consen   25 KGVFVSSVVPG---SPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ   81 (81)
T ss_dssp             EEEEEEEECTT---SHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred             CCEEEEEEeCC---ChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence            37999999999   9999999 999999999999999999999999999999999999984

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.88  E-value=1.6e-09  Score=97.68  Aligned_cols=95  Identities=12%  Similarity=0.147  Sum_probs=73.5

Q ss_pred             CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCcccccccccccccc-EEEEEecCchhhHH-hhhcCCCcchhhHHHH
Q psy9829           1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYP-IVIFLRAETKSNVK-ELRAGIPKYHTNLARQ   78 (333)
Q Consensus         1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~P-ivIfIkp~s~~~lk-~lr~~~~Es~~ki~~r   78 (333)
                      ++|-+.+.+.+++|+.++|++++++|++||||+++++++.|+.....+ ++|||.|||.+.++ +++.|..++.+.+..|
T Consensus        69 f~e~~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~R  148 (186)
T PRK14737         69 FLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKR  148 (186)
T ss_pred             eEEEEEECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHH
Confidence            356677889999999999999999999999999999999998753222 89999999988766 6777776666667777


Q ss_pred             Hhhcccc--ccceeeEEEe
Q psy9829          79 RSRVLFP--VGSTFVGSVL   95 (333)
Q Consensus        79 aer~~qE--~G~~~g~~i~   95 (333)
                      .++...|  ...-|.+.|.
T Consensus       149 l~~~~~e~~~~~~~D~vI~  167 (186)
T PRK14737        149 IENGIIELDEANEFDYKII  167 (186)
T ss_pred             HHHHHHHHhhhccCCEEEE
Confidence            6655433  3444555444

>KOG3550|consensus

Probab=98.83  E-value=6.9e-09  Score=90.96  Aligned_cols=57  Identities=19%  Similarity=0.374  Sum_probs=56.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      ++|||++|.||   |.|.+.|.|+.||.+|++||.+.++--|+.|+.+|+...+.|.|+|
T Consensus       115 spiyisriipg---gvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvv  171 (207)
T KOG3550|consen  115 SPIYISRIIPG---GVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVV  171 (207)
T ss_pred             CceEEEeecCC---ccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEE
Confidence            68999999999   9999999999999999999999999999999999999999999998

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.79  E-value=1.2e-07  Score=95.32  Aligned_cols=149  Identities=21%  Similarity=0.268  Sum_probs=95.8

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEeeccC------
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNY------  177 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~------  177 (333)
                      +.+++|+.|.|||.         |+.. +|++||+ +.+|+..+........++..  .+..+.+.|.|.....      
T Consensus       256 ~~Gv~V~~V~~~sp---------A~~a-GL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l  325 (428)
T TIGR02037       256 QRGALVAQVLPGSP---------AEKA-GLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTL  325 (428)
T ss_pred             CCceEEEEccCCCC---------hHHc-CCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence            47899999999764         4543 4799999 58999998877544444543  4667888888722110      


Q ss_pred             -CCCCCCCCCCCCCceeEEeeecCCCcccccc-----ceeeccccccc-CeEEEEEEccCcccCccccCCCCCCCCEEEE
Q psy9829         178 -DQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ-----VFRIDFGIILG-NKIFVKEVTHRLDNNASAGTHQLAEGDVLLK  250 (333)
Q Consensus       178 -~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~-----~~~~d~G~~l~-~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~  250 (333)
                       ..|....  .      ..     ...+|...     .....+++... .+++|.+|.++   ++|++.| |++||+|++
T Consensus       326 ~~~~~~~~--~------~~-----~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~---SpA~~aG-L~~GDvI~~  388 (428)
T TIGR02037       326 GASPEEQA--S------SS-----NPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSG---SPAARAG-LQPGDVILS  388 (428)
T ss_pred             CcCCCccc--c------cc-----ccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCC---CHHHHcC-CCCCCEEEE
Confidence             0010000  0      00     00001000     01122333221 47999999999   7777654 999999999


Q ss_pred             eCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCC
Q psy9829         251 INNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  284 (333)
Q Consensus       251 ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~  284 (333)
                      |||+.+.  +.++..++|+..  .+.+.|.|.|+..
T Consensus       389 Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~  422 (428)
T TIGR02037       389 VNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA  422 (428)
T ss_pred             ECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            9999876  567888888864  5789999999753

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PLN02772 guanylate kinase

Probab=98.79  E-value=6e-09  Score=104.07  Aligned_cols=86  Identities=15%  Similarity=0.206  Sum_probs=76.4

Q ss_pred             CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH
Q psy9829           1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR   79 (333)
Q Consensus         1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra   79 (333)
                      ++|..++.+++++|+.++|+.++++|++||||+++++++.|+...+.|++|||.||+.+.|+ +++.|.+++.+.+.+|.
T Consensus       201 FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL  280 (398)
T PLN02772        201 FLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRL  280 (398)
T ss_pred             cceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            46778889999999999999999999999999999999999998889999999999999887 88888888888888888


Q ss_pred             hhccccc
Q psy9829          80 SRVLFPV   86 (333)
Q Consensus        80 er~~qE~   86 (333)
                      .+...|.
T Consensus       281 ~~A~~Ei  287 (398)
T PLN02772        281 RNAEAEL  287 (398)
T ss_pred             HHHHHHH
Confidence            7665443

>KOG3550|consensus

Probab=98.72  E-value=2.4e-08  Score=87.62  Aligned_cols=71  Identities=11%  Similarity=0.153  Sum_probs=60.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.|-||+..      ..-||||+|||||+|         |.-++|+-||. |.||+++|.|-.  .+|+.|+++.
T Consensus       100 deglgfnvmggkeq------nspiyisriipggva---------drhgglkrgdqllsvngvsvege~hekavellkaa~  164 (207)
T KOG3550|consen  100 DEGLGFNVMGGKEQ------NSPIYISRIIPGGVA---------DRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV  164 (207)
T ss_pred             ccccceeeccCccc------CCceEEEeecCCccc---------cccCcccccceeEeecceeecchhhHHHHHHHHHhc
Confidence            67999999999864      345999999999876         66677899999 789999998874  6789999999


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      .+|.|+||=
T Consensus       165 gsvklvvry  173 (207)
T KOG3550|consen  165 GSVKLVVRY  173 (207)
T ss_pred             CcEEEEEec
Confidence            999999853

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.63  E-value=3.6e-08  Score=89.41  Aligned_cols=86  Identities=12%  Similarity=0.130  Sum_probs=76.9

Q ss_pred             CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH
Q psy9829           1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR   79 (333)
Q Consensus         1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra   79 (333)
                      ++|-.+.-.++++|+...|++.+.+|+.|||||+.|+.++++..--.-+.|||.|||.+.|+ ++++|.+++.+.+..|.
T Consensus        68 fLE~a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl  147 (191)
T COG0194          68 FLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRL  147 (191)
T ss_pred             cEEEEEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHH
Confidence            34556677799999999999999999999999999999999987667889999999999988 99999999999999998


Q ss_pred             hhccccc
Q psy9829          80 SRVLFPV   86 (333)
Q Consensus        80 er~~qE~   86 (333)
                      +++..|.
T Consensus       148 ~~a~~Ei  154 (191)
T COG0194         148 ENAKKEI  154 (191)
T ss_pred             HHHHHHH
Confidence            8776665

>KOG1892|consensus

Probab=98.58  E-value=1.8e-07  Score=100.22  Aligned_cols=60  Identities=27%  Similarity=0.446  Sum_probs=57.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .|||||+|.+|   |+|+.||||+.||.+|+|||++|-++|.|.|..++-.++..|+|-|.+.
T Consensus       960 lGIYvKsVV~G---gaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen  960 LGIYVKSVVEG---GAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred             cceEEEEeccC---CccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhh
Confidence            37999999999   9999999999999999999999999999999999999999999999885

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.57  E-value=7.6e-08  Score=74.53  Aligned_cols=71  Identities=14%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.+.++.++.     +.++||++|.|||+|         +..+ |++||+ +.+|+.++.+++  .++++++.+
T Consensus         8 ~~~~lG~~l~~~~~~~-----~~~~~V~~v~~~~~a---------~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~   72 (81)
T PF00595_consen    8 GNGPLGFTLRGGSDND-----EKGVFVSSVVPGSPA---------ERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA   72 (81)
T ss_dssp             TTSBSSEEEEEESTSS-----SEEEEEEEECTTSHH---------HHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS
T ss_pred             CCCCcCEEEEecCCCC-----cCCEEEEEEeCCChH---------Hhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC
Confidence            5679999999998887     589999999997754         4443 699999 689999999996  556788888


Q ss_pred             CCceEEEEE
Q psy9829         163 HNCISAQIK  171 (333)
Q Consensus       163 g~~v~L~v~  171 (333)
                      ++.++|+|+
T Consensus        73 ~~~v~L~V~   81 (81)
T PF00595_consen   73 SNPVTLTVQ   81 (81)
T ss_dssp             TSEEEEEEE
T ss_pred             CCcEEEEEC
Confidence            889999874

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK10942 serine endoprotease; Provisional

Probab=98.51  E-value=2.2e-06  Score=87.81  Aligned_cols=153  Identities=16%  Similarity=0.151  Sum_probs=93.3

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEeeccCCCCCCC
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNYDQPEKG  183 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~~~p~~~  183 (333)
                      ..|++|+.|.|||         ||+. .+||+||+ +.+|+..+.+...-..++..  .+..+.|.|.|......-.-. 
T Consensus       310 ~~GvlV~~V~~~S---------pA~~-AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~-  378 (473)
T PRK10942        310 QRGAFVSQVLPNS---------SAAK-AGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVE-  378 (473)
T ss_pred             CCceEEEEECCCC---------hHHH-cCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEE-
Confidence            4699999999976         4453 45899999 58999998887544445543  356688888773211000000 


Q ss_pred             CCCCCCCceeEEeeecCCCcccccc-ceeecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHH
Q psy9829         184 EMSFRKGDVFHVIDTLHNGVVGSWQ-VFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVK  262 (333)
Q Consensus       184 ~l~~~~g~~~hv~~sl~~~~lG~~~-~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~  262 (333)
                       +......  .......  .+|... ....+.   ...++.|.++.++   ++|++- .|++||+|++|||+...+  .+
T Consensus       379 -l~~~~~~--~~~~~~~--~lGl~g~~l~~~~---~~~gvvV~~V~~~---S~A~~a-GL~~GDvIv~VNg~~V~s--~~  444 (473)
T PRK10942        379 -LQQSSQN--QVDSSNI--FNGIEGAELSNKG---GDKGVVVDNVKPG---TPAAQI-GLKKGDVIIGANQQPVKN--IA  444 (473)
T ss_pred             -eCcCccc--ccccccc--cccceeeeccccc---CCCCeEEEEeCCC---ChHHHc-CCCCCCEEEEECCEEcCC--HH
Confidence             0000000  0000000  001000 000000   0136899999999   777655 599999999999987765  68


Q ss_pred             HHHHHHHhcCCceEEEEeccCC
Q psy9829         263 EARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       263 eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      |..++++.....+.|.|.|+..
T Consensus       445 dl~~~l~~~~~~v~l~V~R~g~  466 (473)
T PRK10942        445 ELRKILDSKPSVLALNIQRGDS  466 (473)
T ss_pred             HHHHHHHhCCCeEEEEEEECCE
Confidence            8888888877889999988753

>PRK10139 serine endoprotease; Provisional

Probab=98.49  E-value=2.3e-06  Score=87.25  Aligned_cols=147  Identities=14%  Similarity=0.131  Sum_probs=92.2

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEeeccC------
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNY------  177 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~------  177 (333)
                      +.|++|+.|.|||.         |+. .+||+||+ +.+|+..++.......++..  .+..+.+.|.|.....      
T Consensus       289 ~~Gv~V~~V~~~Sp---------A~~-AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~  358 (455)
T PRK10139        289 QRGAFVSEVLPNSG---------SAK-AGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTL  358 (455)
T ss_pred             CCceEEEEECCCCh---------HHH-CCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence            46999999999774         443 45799999 58999998887544445543  4567888887732110      


Q ss_pred             -CCCCC--CCCCCCCCceeEEeeecCCCccccccceeeccccc-ccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCC
Q psy9829         178 -DQPEK--GEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGII-LGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINN  253 (333)
Q Consensus       178 -~~p~~--~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~-l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING  253 (333)
                       ..+..  ...++       .+     ...|...  ..+ -+. ...+++|.+|.++   ++|++- .|++||+|++|||
T Consensus       359 ~~~~~~~~~~~~~-------~~-----~~~g~~l--~~~-~~~~~~~Gv~V~~V~~~---spA~~a-GL~~GD~I~~Ing  419 (455)
T PRK10139        359 DTSTSSSASAEMI-------TP-----ALQGATL--SDG-QLKDGTKGIKIDEVVKG---SPAAQA-GLQKDDVIIGVNR  419 (455)
T ss_pred             CCCCCcccccccc-------cc-----cccccEe--ccc-ccccCCCceEEEEeCCC---ChHHHc-CCCCCCEEEEECC
Confidence             00000  00000       00     0000000  000 000 0136899999999   777654 5999999999999


Q ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         254 HPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       254 ~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      +...  +.++...+|+.....+.|.|.|+..
T Consensus       420 ~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~  448 (455)
T PRK10139        420 DRVN--SIAEMRKVLAAKPAIIALQIVRGNE  448 (455)
T ss_pred             EEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence            8765  4677778887767789999998753

>KOG0707|consensus

Probab=98.49  E-value=1.4e-07  Score=87.83  Aligned_cols=87  Identities=17%  Similarity=0.167  Sum_probs=77.2

Q ss_pred             CcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhh
Q psy9829           3 EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSR   81 (333)
Q Consensus         3 ~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer   81 (333)
                      |...+..+.++|++++|++++..||.|+|||..|.+..++...+.++.||++||+.+.+. +++.+.+|....+.+|...
T Consensus       105 E~a~~~gn~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~s  184 (231)
T KOG0707|consen  105 EFATFSGNKYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKS  184 (231)
T ss_pred             hhhhhhcccCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHh
Confidence            555677889999999999999999999999999999999999999999999999977655 8999999999999998886


Q ss_pred             ccccccce
Q psy9829          82 VLFPVGST   89 (333)
Q Consensus        82 ~~qE~G~~   89 (333)
                      ++.|+...
T Consensus       185 a~~e~~~~  192 (231)
T KOG0707|consen  185 AEEEFEIL  192 (231)
T ss_pred             hhhhhccc
Confidence            66666543

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.48  E-value=5.1e-07  Score=69.01  Aligned_cols=59  Identities=29%  Similarity=0.456  Sum_probs=54.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .++||..|.++   ++|++.| |++||+|++|||+.+.++++.+...+++.+.+.+.|++.|+
T Consensus        26 ~~~~i~~v~~~---s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~   84 (85)
T smart00228       26 GGVVVSSVVPG---SPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG   84 (85)
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            36999999999   8888877 99999999999999999999999999999888999999875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.45  E-value=6.7e-07  Score=68.46  Aligned_cols=56  Identities=29%  Similarity=0.491  Sum_probs=50.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      .+++|++|.++   ++|++ ..|++||+|++|||..+.++++.++.++|+.....+.|++
T Consensus        26 ~~~~V~~v~~~---s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992          26 GGIFVSRVEPG---GPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             CCeEEEEECCC---ChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            36999999999   77666 6799999999999999999999999999999888888876

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.31  E-value=2.2e-06  Score=63.99  Aligned_cols=55  Identities=24%  Similarity=0.442  Sum_probs=49.6

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC-CceEEEE
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTI  279 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~-~~v~L~V  279 (333)
                      +++|.++.++   ++|+. +.|++||+|++|||.+..+++++++.++|+.+. +.+.|+|
T Consensus        14 ~~~V~~v~~~---s~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          14 GVVVLSVEPG---SPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CEEEEEeCCC---CHHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            6999999999   77765 579999999999999999999999999999987 6788876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>TIGR00054 RIP metalloprotease RseP

Probab=98.13  E-value=1.6e-05  Score=80.25  Aligned_cols=134  Identities=13%  Similarity=0.062  Sum_probs=89.5

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEEeeccCCCCCCCCC
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEM  185 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R~~~~~~~p~~~~l  185 (333)
                      ..+.+|++|.|+|.         |+. .+|++||+ +.+|+..+.+..+.++.+......+.+.+.|.+...        
T Consensus       127 ~~g~~V~~V~~~Sp---------A~~-AGL~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r~g~~~--------  188 (420)
T TIGR00054       127 EVGPVIELLDKNSI---------ALE-AGIEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILAERENW--------  188 (420)
T ss_pred             CCCceeeccCCCCH---------HHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEEecCce--------
Confidence            35678999999764         454 46899999 589999988876555655443356777777743211        


Q ss_pred             CCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHH
Q psy9829         186 SFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEAR  265 (333)
Q Consensus       186 ~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~  265 (333)
                              .+.-++     +... ...+      .+..|.++.++   ++|++. .|++||+|++|||+...  +.+|..
T Consensus       189 --------~l~v~l-----~~~~-~~~~------~g~vV~~V~~~---SpA~~a-GL~~GD~Iv~Vng~~V~--s~~dl~  242 (420)
T TIGR00054       189 --------TFEVMK-----ELIP-RGPK------IEPVLSDVTPN---SPAEKA-GLKEGDYIQSINGEKLR--SWTDFV  242 (420)
T ss_pred             --------Eecccc-----ccee-cCCC------cCcEEEEECCC---CHHHHc-CCCCCCEEEEECCEECC--CHHHHH
Confidence                    000000     0000 0001      24779999999   666544 59999999999998875  467888


Q ss_pred             HHHHhc-CCceEEEEeccCC
Q psy9829         266 KLIDSS-KEKLSLTIRREVP  284 (333)
Q Consensus       266 ~~l~~s-~~~v~L~V~R~~~  284 (333)
                      +.++.. .+.+.+.|.|+..
T Consensus       243 ~~l~~~~~~~v~l~v~R~g~  262 (420)
T TIGR00054       243 SAVKENPGKSMDIKVERNGE  262 (420)
T ss_pred             HHHHhCCCCceEEEEEECCE
Confidence            888764 4568999998763

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3571|consensus

Probab=98.09  E-value=5.6e-06  Score=84.23  Aligned_cols=63  Identities=21%  Similarity=0.335  Sum_probs=57.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC---CceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK---EKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~---~~v~L~V~R~~~~  285 (333)
                      ++|||.+|.+|   |+-|.|||+.+||.||.||-++.+|||-.||++.|+..-   .-+.|+|++-|-+
T Consensus       277 ggIYVgsImkg---GAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP  342 (626)
T KOG3571|consen  277 GGIYVGSIMKG---GAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDP  342 (626)
T ss_pred             CceEEeeeccC---ceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCC
Confidence            58999999999   999999999999999999999999999999999998743   3489999887653

>KOG3553|consensus

Probab=98.06  E-value=8.2e-07  Score=73.06  Aligned_cols=63  Identities=21%  Similarity=0.263  Sum_probs=54.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .||||+++.+|   ++|+.. .|+.+|+||.+||-+..=|||..|++.|+. .+.|++.|+|..-+++
T Consensus        59 ~GiYvT~V~eG---sPA~~A-GLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~~l~~~  121 (124)
T KOG3553|consen   59 KGIYVTRVSEG---SPAEIA-GLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQSLQKA  121 (124)
T ss_pred             ccEEEEEeccC---Chhhhh-cceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhhccchh
Confidence            57999999999   666655 499999999999998888999999999998 6788888888765544

>KOG3551|consensus

Probab=98.04  E-value=3.6e-06  Score=83.38  Aligned_cols=73  Identities=14%  Similarity=0.032  Sum_probs=61.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.||||+|-||++|--      -|.||||-||=+         ||....|.+||. |.||+.|+...+  +||+|||.+|
T Consensus        95 ~gGLGISIKGGreNkM------PIlISKIFkGlA---------ADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraG  159 (506)
T KOG3551|consen   95 AGGLGISIKGGRENKM------PILISKIFKGLA---------ADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAG  159 (506)
T ss_pred             CCcceEEeecCcccCC------ceehhHhccccc---------cccccceeeccEEEEecchhhhhcchHHHHHHHHhhC
Confidence            5599999999999854      389999999754         566666799999 589999998886  8899999999


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      +.|-|.||=.+
T Consensus       160 keV~levKy~R  170 (506)
T KOG3551|consen  160 KEVLLEVKYMR  170 (506)
T ss_pred             ceeeeeeeeeh
Confidence            99998886433

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.03  E-value=4.5e-05  Score=77.57  Aligned_cols=145  Identities=16%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             EeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhh--hhhhcCCceEEEEEEeeccCCCCCCCCCCC
Q psy9829         111 KPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQ--VFRIAHNCISAQIKRTHFNYDQPEKGEMSF  187 (333)
Q Consensus       111 ~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~--alr~~g~~v~L~v~R~~~~~~~p~~~~l~~  187 (333)
                      .|+.|.|||.         |+. .+||+||+ +.+|+..+++..+-..  +.+..+..+++.|.|..........  +..
T Consensus       129 lV~~V~~~Sp---------A~k-AGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~--l~~  196 (449)
T PRK10779        129 VVGEIAPNSI---------AAQ-AQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKT--LDL  196 (449)
T ss_pred             cccccCCCCH---------HHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEE--ecc
Confidence            6899999764         454 46899999 5899998887743222  2233455688888873211100000  000


Q ss_pred             CCCceeEEeeecCCCccccccceeecccccc---cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHH
Q psy9829         188 RKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL---GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEA  264 (333)
Q Consensus       188 ~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l---~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA  264 (333)
                      .... .. .         .........|+.-   ..+..|.+|.++   ++|++- .|++||+|++|||+...  +.+|.
T Consensus       197 ~~~~-~~-~---------~~~~~~~~lGl~~~~~~~~~vV~~V~~~---SpA~~A-GL~~GDvIl~Ing~~V~--s~~dl  259 (449)
T PRK10779        197 RHWA-FE-P---------DKQDPVSSLGIRPRGPQIEPVLAEVQPN---SAASKA-GLQAGDRIVKVDGQPLT--QWQTF  259 (449)
T ss_pred             cccc-cC-c---------cccchhhcccccccCCCcCcEEEeeCCC---CHHHHc-CCCCCCEEEEECCEEcC--CHHHH
Confidence            0000 00 0         0000000111110   013679999999   666553 59999999999998765  56677


Q ss_pred             HHHHHh-cCCceEEEEeccCC
Q psy9829         265 RKLIDS-SKEKLSLTIRREVP  284 (333)
Q Consensus       265 ~~~l~~-s~~~v~L~V~R~~~  284 (333)
                      .+.++. ..+.+.|+|.|+..
T Consensus       260 ~~~l~~~~~~~v~l~v~R~g~  280 (449)
T PRK10779        260 VTLVRDNPGKPLALEIERQGS  280 (449)
T ss_pred             HHHHHhCCCCEEEEEEEECCE
Confidence            777766 34578999999864

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.98  E-value=7.5e-06  Score=74.61  Aligned_cols=81  Identities=12%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             CcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhh
Q psy9829           3 EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSR   81 (333)
Q Consensus         3 ~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer   81 (333)
                      |..++...+++|+.++|++++++|++||||++.++++.|+......++||+.||+.+.++ +++.|..++...+..|...
T Consensus        80 e~~~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~  159 (206)
T PRK14738         80 EWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLAT  159 (206)
T ss_pred             EEEEEcCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            445566788999999999999999999999999999999865545588999999987654 7777776655556566554


Q ss_pred             cc
Q psy9829          82 VL   83 (333)
Q Consensus        82 ~~   83 (333)
                      ..
T Consensus       160 ~~  161 (206)
T PRK14738        160 AP  161 (206)
T ss_pred             HH
Confidence            43

>KOG3605|consensus

Probab=97.95  E-value=6.2e-06  Score=85.97  Aligned_cols=150  Identities=13%  Similarity=0.205  Sum_probs=100.7

Q ss_pred             cceeeEEEec-ccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc-hhhh-hhhhc
Q psy9829          87 GSTFVGSVLG-ARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV-GSWQ-VFRIA  162 (333)
Q Consensus        87 G~~~g~~i~g-g~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~-~a~~-alr~~  162 (333)
                      |..||.+|.. |-|.-.     |-++|...-.         .|||...+.|-+||+ |.+|++++.|.. .+.| .+|..
T Consensus       656 GEiLGVViVESGWGSmL-----PTVViAnmm~---------~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~  721 (829)
T KOG3605|consen  656 GEILGVVIVESGWGSIL-----PTVVIANMMH---------GGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL  721 (829)
T ss_pred             CceeeEEEEecCccccc-----hHHHHHhccc---------CChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence            8999999883 333322     3444555555         567777888899999 699999999985 2233 44442


Q ss_pred             --CCceEEEEEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCC
Q psy9829         163 --HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTH  240 (333)
Q Consensus       163 --g~~v~L~v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg  240 (333)
                        +..|.|.|-++-      +.-..      .++-|+            .+...|+.+-+|| |=.+.-|   |.|.|. 
T Consensus       722 KnQT~VkltiV~cp------PV~~V------~I~RPd------------~kyQLGFSVQNGi-ICSLlRG---GIAERG-  772 (829)
T KOG3605|consen  722 KNQTAVKLNIVSCP------PVTTV------LIRRPD------------LRYQLGFSVQNGI-ICSLLRG---GIAERG-  772 (829)
T ss_pred             cccceEEEEEecCC------CceEE------Eeeccc------------chhhccceeeCcE-eehhhcc---cchhcc-
Confidence              334555553311      11000      011111            2345666666677 5667777   887765 


Q ss_pred             CCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       241 ~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      .+++|-||++|||++.-.+-|+.-+++|-.+-..++++-
T Consensus       773 GVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKT  811 (829)
T KOG3605|consen  773 GVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKT  811 (829)
T ss_pred             CceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhc
Confidence            599999999999999999999999999999888877753

>KOG3549|consensus

Probab=97.84  E-value=6.1e-05  Score=74.02  Aligned_cols=57  Identities=19%  Similarity=0.356  Sum_probs=54.8

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      +|-|++|...   .+|...|.|=+||-||.|||+.....+|+|++++|++.++.|+|+|.
T Consensus        81 PvviSkI~kd---QaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~  137 (505)
T KOG3549|consen   81 PVVISKIYKD---QAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK  137 (505)
T ss_pred             cEEeehhhhh---hhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence            6889999998   99999999999999999999999999999999999999999999984

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=97.74  E-value=7.3e-05  Score=58.13  Aligned_cols=59  Identities=24%  Similarity=0.405  Sum_probs=47.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~  284 (333)
                      .+++|.++.++   ++|++-| |++||+|++|||+..  -+.++....|..  ..+++.|+|.|+..
T Consensus        14 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R~g~   74 (82)
T PF13180_consen   14 GGVVVVSVIPG---SPAAKAG-LQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLRDGE   74 (82)
T ss_dssp             SSEEEEEESTT---SHHHHTT-S-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred             CeEEEEEeCCC---CcHHHCC-CCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            47999999999   8888776 999999999999888  445676777743  45689999999754

...

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=97.71  E-value=0.00014  Score=56.20  Aligned_cols=59  Identities=25%  Similarity=0.539  Sum_probs=50.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~  282 (333)
                      .+++|..|.++   ++|++. .|++||+|++|||....+.++.+...+++. ..+.+.|.+.|+
T Consensus        13 ~~~~V~~v~~~---s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          13 GGLVITSVLPG---SPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             CeEEEEEecCC---CCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            46899999999   777665 699999999999999999889999988875 356789999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.69  E-value=2.1e-05  Score=67.41  Aligned_cols=54  Identities=13%  Similarity=0.136  Sum_probs=49.6

Q ss_pred             CcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecC
Q psy9829           3 EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAE   56 (333)
Q Consensus         3 ~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~   56 (333)
                      |.+.+.++.+.+..++|++++++|+.||||++++++++|+.....|++|||.||
T Consensus        67 e~~~~~~~~yg~~~~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~  120 (137)
T cd00071          67 EWAEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP  120 (137)
T ss_pred             EEEEEcCEEecCcHHHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence            445566778889999999999999999999999999999999999999999998

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG3571|consensus

Probab=97.65  E-value=7.7e-05  Score=76.15  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      -..||++|+|=.++-    +|.||||.+|-||||-       ++||+  +-+||+ +.||++...+++  .||.+||.+ 
T Consensus       260 vnfLGiSivgqsn~r----gDggIYVgsImkgGAV-------A~DGR--Ie~GDMiLQVNevsFENmSNd~AVrvLREaV  326 (626)
T KOG3571|consen  260 VNFLGISIVGQSNAR----GDGGIYVGSIMKGGAV-------ALDGR--IEPGDMILQVNEVSFENMSNDQAVRVLREAV  326 (626)
T ss_pred             cccceeEeecccCcC----CCCceEEeeeccCcee-------eccCc--cCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence            447999999977764    5899999999999876       56665  599999 589999999996  889999874 


Q ss_pred             --CCceEEEEEE
Q psy9829         163 --HNCISAQIKR  172 (333)
Q Consensus       163 --g~~v~L~v~R  172 (333)
                        +.-+.|+|-.
T Consensus       327 ~~~gPi~ltvAk  338 (626)
T KOG3571|consen  327 SRPGPIKLTVAK  338 (626)
T ss_pred             ccCCCeEEEEee
Confidence              2227777754

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.65  E-value=6.2e-05  Score=66.01  Aligned_cols=76  Identities=13%  Similarity=0.148  Sum_probs=61.7

Q ss_pred             CCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhc
Q psy9829           7 SKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRV   82 (333)
Q Consensus         7 ~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~   82 (333)
                      .....+.++.++|++++++|+.||||++..+++.++..-..|+.||+-|++.+.++ +++.|..++.+.+..+.+..
T Consensus        72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~  148 (180)
T TIGR03263        72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKA  148 (180)
T ss_pred             ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34556788899999999999999999999999999988778899999999877766 67777766555566655443

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=97.63  E-value=0.00014  Score=54.16  Aligned_cols=64  Identities=17%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC-C
Q psy9829          89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH-N  164 (333)
Q Consensus        89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g-~  164 (333)
                      +|||.+.++.+        .+++|++|.+||         ||+. ..|++||. +.+|+..+++.  ....+.++... .
T Consensus         2 ~~G~~~~~~~~--------~~~~V~~v~~~s---------~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~   63 (70)
T cd00136           2 GLGFSIRGGTE--------GGVVVLSVEPGS---------PAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGE   63 (70)
T ss_pred             CccEEEecCCC--------CCEEEEEeCCCC---------HHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCC
Confidence            68888886544        689999999966         4454 45799999 68999999998  45556666543 5


Q ss_pred             ceEEEE
Q psy9829         165 CISAQI  170 (333)
Q Consensus       165 ~v~L~v  170 (333)
                      .++|.+
T Consensus        64 ~v~l~v   69 (70)
T cd00136          64 KVTLTV   69 (70)
T ss_pred             eEEEEE
Confidence            677765

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.62  E-value=0.00026  Score=54.82  Aligned_cols=58  Identities=17%  Similarity=0.332  Sum_probs=47.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~  283 (333)
                      .|+.|.++.++   ++|++. .|++||+|++|||+...  +.++...+|...  .+.+.|++.|+.
T Consensus        10 ~Gv~V~~V~~~---spa~~a-GL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g   69 (79)
T cd00991          10 AGVVIVGVIVG---SPAENA-VLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST   69 (79)
T ss_pred             CcEEEEEECCC---ChHHhc-CCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence            46899999999   666543 69999999999998877  567888888764  567899998865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.62  E-value=0.00026  Score=54.48  Aligned_cols=56  Identities=25%  Similarity=0.488  Sum_probs=45.2

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      |+.|.++.++   ++|+. + |++||+|++|||....  +.++...+|..  ..+.+.|.+.|+.
T Consensus         9 Gv~V~~V~~~---s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g   66 (79)
T cd00986           9 GVYVTSVVEG---MPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREE   66 (79)
T ss_pred             CEEEEEECCC---Cchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            6889999999   77764 5 9999999999998766  46677777764  3567899998865

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=97.61  E-value=0.00017  Score=54.97  Aligned_cols=68  Identities=13%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g  163 (333)
                      ..+|||.+.++.+.      ..+++|++|.+||.|         +. .+|++||+ +.+|+..+++.  .....+++...
T Consensus        11 ~~~~G~~~~~~~~~------~~~~~V~~v~~~s~a---------~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~   74 (82)
T cd00992          11 GGGLGFSLRGGKDS------GGGIFVSRVEPGGPA---------ER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSG   74 (82)
T ss_pred             CCCcCEEEeCcccC------CCCeEEEEECCCChH---------Hh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCC
Confidence            56899999876544      468999999997754         44 45799999 69999999854  35556667666


Q ss_pred             CceEEEE
Q psy9829         164 NCISAQI  170 (333)
Q Consensus       164 ~~v~L~v  170 (333)
                      ..++|.+
T Consensus        75 ~~v~l~v   81 (82)
T cd00992          75 DEVTLTV   81 (82)
T ss_pred             CeEEEEE
Confidence            6777765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3552|consensus

Probab=97.61  E-value=9.2e-05  Score=79.91  Aligned_cols=64  Identities=25%  Similarity=0.471  Sum_probs=59.0

Q ss_pred             ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      ||++-|-++.|..|++|   |.+  .|.|++||+||+|||.+.....-+.+..+++.|++.|.|+|.+.
T Consensus        69 FgfvagrPviVr~VT~G---Gps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP  132 (1298)
T KOG3552|consen   69 FGFVAGRPVIVRFVTEG---GPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP  132 (1298)
T ss_pred             ceeecCCceEEEEecCC---CCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence            56666678999999999   887  48999999999999999999999999999999999999999886

>KOG3553|consensus

Probab=97.56  E-value=0.00011  Score=60.71  Aligned_cols=74  Identities=16%  Similarity=0.047  Sum_probs=52.2

Q ss_pred             ceeeEEEecccCCC----CCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCEE-EEceeeccCcchhhhhhhhc
Q psy9829          88 STFVGSVLGARGAL----DLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDTLHNGVVGSWQVFRIA  162 (333)
Q Consensus        88 ~~~g~~i~gg~d~p----~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I-~Vnd~dv~gv~~a~~alr~~  162 (333)
                      --+||.|-||.|.-    +|.--|.|||||.|..||         ||+- .+||.+|.| .||+-|.+=|+ +.+|.+-.
T Consensus        35 l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGs---------PA~~-AGLrihDKIlQvNG~DfTMvT-Hd~Avk~i  103 (124)
T KOG3553|consen   35 LILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGS---------PAEI-AGLRIHDKILQVNGWDFTMVT-HDQAVKRI  103 (124)
T ss_pred             EEEEEEeccccCCCcccCCCCcCCccEEEEEeccCC---------hhhh-hcceecceEEEecCceeEEEE-hHHHHHHh
Confidence            46899999999973    455569999999999987         5555 458999995 78888877665 33555432


Q ss_pred             --CCceEEEEEE
Q psy9829         163 --HNCISAQIKR  172 (333)
Q Consensus       163 --g~~v~L~v~R  172 (333)
                        .+.++|.|-|
T Consensus       104 ~k~~vl~mLVaR  115 (124)
T KOG3553|consen  104 TKEEVLRMLVAR  115 (124)
T ss_pred             hHhHHHHHHHHh
Confidence              2234454444

>KOG3551|consensus

Probab=97.54  E-value=6.7e-05  Score=74.55  Aligned_cols=61  Identities=23%  Similarity=0.311  Sum_probs=55.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE--eccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI--RREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V--~R~~  283 (333)
                      -+|.|++|.+|   =+|.+.+-|..||-||++||.++...||+||++.||..+..|-|.|  .|+.
T Consensus       110 MPIlISKIFkG---lAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy~REv  172 (506)
T KOG3551|consen  110 MPILISKIFKG---LAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKYMREV  172 (506)
T ss_pred             CceehhHhccc---cccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeeeehhc
Confidence            47999999999   8888889999999999999999999999999999999998876654  6665

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.51  E-value=0.00032  Score=53.24  Aligned_cols=57  Identities=25%  Similarity=0.345  Sum_probs=45.9

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~  283 (333)
                      ++.|.++.++   ++|++. .|++||+|++|||+...  +.++...+|... .+.+.+++.|+.
T Consensus        13 ~~~V~~v~~~---s~a~~~-gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989          13 EPVIGEVVPG---SPAAKA-GLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             CcEEEeECCC---CHHHHc-CCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence            4789999998   777654 49999999999999877  457787888765 568899998865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3651|consensus

Probab=97.49  E-value=0.00021  Score=69.18  Aligned_cols=58  Identities=17%  Similarity=0.345  Sum_probs=55.0

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      -+||-.|.++   .+|++||+++-||-|++|||++..+.|..|..++|+-+.+.|.+..-+
T Consensus        31 ClYiVQvFD~---tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyNK   88 (429)
T KOG3651|consen   31 CLYIVQVFDK---TPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYNK   88 (429)
T ss_pred             eEEEEEeccC---CchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEehh
Confidence            3899999999   999999999999999999999999999999999999999999988755

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.45  E-value=0.00061  Score=52.80  Aligned_cols=58  Identities=26%  Similarity=0.453  Sum_probs=45.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++. .|++||+|++|||....+.  .+..+++...  ...+.|.+.|+.
T Consensus        24 ~g~~V~~v~~~---s~a~~~-gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          24 KGVLVASVDPG---SPAAKA-GLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             CEEEEEEECCC---CHHHHc-CCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            47999999999   776654 5999999999999887654  4556666654  678899998865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=97.29  E-value=0.00091  Score=50.85  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=48.4

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchh--hhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGS--WQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a--~~alr~~g~  164 (333)
                      ..|||.+..+...      +.+++|+.|.+||.|         ... +|++||+ +.+|+..+.+....  ...++..+.
T Consensus        12 ~~~G~~~~~~~~~------~~~~~i~~v~~~s~a---------~~~-gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~   75 (85)
T smart00228       12 GGLGFSLVGGKDE------GGGVVVSSVVPGSPA---------AKA-GLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGG   75 (85)
T ss_pred             CcccEEEECCCCC------CCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            5788888754322      268999999997643         443 3799999 69999999877432  233344555


Q ss_pred             ceEEEEEE
Q psy9829         165 CISAQIKR  172 (333)
Q Consensus       165 ~v~L~v~R  172 (333)
                      .++|.+.|
T Consensus        76 ~~~l~i~r   83 (85)
T smart00228       76 KVTLTVLR   83 (85)
T ss_pred             eEEEEEEe
Confidence            78888876

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.23  E-value=0.00073  Score=51.59  Aligned_cols=56  Identities=21%  Similarity=0.248  Sum_probs=40.9

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      ++.|.+|.++   ++|+.- .|++||+|++|||+...+  ..++.+.+ ...+.+.|.+.|+.
T Consensus        13 ~~~V~~V~~~---s~a~~a-Gl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g   68 (80)
T cd00990          13 LGKVTFVRDD---SPADKA-GLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD   68 (80)
T ss_pred             cEEEEEECCC---ChHHHh-CCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence            5889999999   766554 499999999999987655  33332222 24568899988864

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3606|consensus

Probab=97.18  E-value=0.0019  Score=61.94  Aligned_cols=64  Identities=19%  Similarity=0.311  Sum_probs=57.0

Q ss_pred             cccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       213 d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      ..|+.-..||||+++.||   |+|.-.|=|.++|-||++||+-..+.|+.+.-.++-+-...|-++|
T Consensus       187 p~GlekvpGIFISRlVpG---GLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTV  250 (358)
T KOG3606|consen  187 PHGLEKVPGIFISRLVPG---GLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITV  250 (358)
T ss_pred             cccccccCceEEEeecCC---ccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEe
Confidence            345544568999999999   9999999999999999999999999999999999988888888877

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.14  E-value=0.00074  Score=68.23  Aligned_cols=59  Identities=32%  Similarity=0.454  Sum_probs=54.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC-ceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~-~v~L~V~R~  282 (333)
                      .++.|.+..++   ++|++-| |++||+|+.|||.++.+|+..||++.|+.... .|+|++.|.
T Consensus       112 ~~~~V~s~~~~---~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793         112 GGVKVVSPIDG---SPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             CCcEEEecCCC---ChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            36889999999   9999999 99999999999999999999999999998664 799999996

>KOG0609|consensus

Probab=97.12  E-value=0.00059  Score=70.29  Aligned_cols=57  Identities=23%  Similarity=0.370  Sum_probs=55.1

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .+||-+|..|   |+|.+.|.|++||.|++|||++..+.++.|.+.+|+.+...++|+|.
T Consensus       147 ~~~vARI~~G---G~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkii  203 (542)
T KOG0609|consen  147 KVVVARIMHG---GMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKII  203 (542)
T ss_pred             ccEEeeeccC---CcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEc
Confidence            5999999999   99999999999999999999999999999999999999999999983

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.08  E-value=0.00079  Score=60.31  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             CCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhh
Q psy9829          10 CSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSR   81 (333)
Q Consensus        10 ~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer   81 (333)
                      +.+.++.++|+.++++|+.||+|++++++..|......+++||+-|++.+.++ ++..|...+.+.+..+...
T Consensus        79 ~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~  151 (205)
T PRK00300         79 NYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAK  151 (205)
T ss_pred             ccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45667889999999999999999999999998887778899999999876665 6666655555555555443

>KOG3549|consensus

Probab=97.03  E-value=0.00072  Score=66.69  Aligned_cols=70  Identities=14%  Similarity=0.058  Sum_probs=60.1

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~  164 (333)
                      .|||++|-||...-      --|.||||.+         |.+||-.+.|=+||. |.||++-|+.-.  ++|+.||.+|.
T Consensus        66 GGlGLSIKGGaEHn------~PvviSkI~k---------dQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd  130 (505)
T KOG3549|consen   66 GGLGLSIKGGAEHN------LPVVISKIYK---------DQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD  130 (505)
T ss_pred             CcceeeeccccccC------ccEEeehhhh---------hhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence            39999999997643      3489999999         788898888999999 689999888875  77899999999


Q ss_pred             ceEEEEEE
Q psy9829         165 CISAQIKR  172 (333)
Q Consensus       165 ~v~L~v~R  172 (333)
                      .|+|.|+-
T Consensus       131 eVtlTV~~  138 (505)
T KOG3549|consen  131 EVTLTVKH  138 (505)
T ss_pred             EEEEEeHh
Confidence            99999964

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.02  E-value=0.0016  Score=63.69  Aligned_cols=59  Identities=29%  Similarity=0.404  Sum_probs=50.7

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~~  283 (333)
                      +++|..|.++   ++|++.| |++||+|++|||+.+.+.+.+++..++.. ....+.|+|.|+.
T Consensus        63 ~~~V~~V~~~---spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        63 EIVIVSPFEG---SPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             EEEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            6899999999   7777666 99999999999999999888888888865 4567899998875

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=96.97  E-value=0.0018  Score=64.88  Aligned_cols=59  Identities=27%  Similarity=0.419  Sum_probs=50.5

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~~  283 (333)
                      ++.|..+.++   ++|++-| |++||+|++|||+++.+++..++..+|+. ....+.|+|.|+.
T Consensus       103 g~~V~~V~~~---SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049        103 GLVVVAPAPG---GPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             cEEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            6889999999   7777665 99999999999999999999999988876 4457888888764

>KOG1892|consensus

Probab=96.95  E-value=0.0013  Score=71.58  Aligned_cols=75  Identities=15%  Similarity=0.150  Sum_probs=59.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.|+|++|...+|...   .--||||-+|.+||+|         +.++||..||. +.|++.++-|++  .|...+-..|
T Consensus       942 nnGmGLSIVAAkGaGq---~klGIYvKsVV~GgaA---------d~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg 1009 (1629)
T KOG1892|consen  942 NNGMGLSIVAAKGAGQ---RKLGIYVKSVVEGGAA---------DHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTG 1009 (1629)
T ss_pred             cCCceEEEEeeccCCc---cccceEEEEeccCCcc---------ccccccccCceeeeecCcccccccHHHHHHHHhccC
Confidence            6799999999888877   4589999999998765         44556699999 689999999997  3333444589


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ++|.|-|...
T Consensus      1010 ~vV~leVaKq 1019 (1629)
T KOG1892|consen 1010 NVVHLEVAKQ 1019 (1629)
T ss_pred             CeEEEehhhh
Confidence            9999988653

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=96.93  E-value=0.0015  Score=50.60  Aligned_cols=56  Identities=13%  Similarity=0.141  Sum_probs=42.8

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhh--hcCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFR--IAHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr--~~g~~v~L~v~R  172 (333)
                      ..+++|..|.+||.         |... +|++||+ +.+|+..+++......++.  ..+..++|.|.|
T Consensus        13 ~~g~~V~~V~~~sp---------A~~a-Gl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R   71 (82)
T PF13180_consen   13 TGGVVVVSVIPGSP---------AAKA-GLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLR   71 (82)
T ss_dssp             SSSEEEEEESTTSH---------HHHT-TS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred             CCeEEEEEeCCCCc---------HHHC-CCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            36999999999764         4543 4799999 6899999988765555663  367779999988

...

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=96.70  E-value=0.0029  Score=63.83  Aligned_cols=61  Identities=25%  Similarity=0.398  Sum_probs=47.4

Q ss_pred             cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCCC
Q psy9829         219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPR  285 (333)
Q Consensus       219 ~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~~  285 (333)
                      ..+++|.+|.++   ++|++.| |++||+|++|||+...+  ..+....+..  ..+.+.|+|.|+...
T Consensus       256 ~~Gv~V~~V~~~---spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~  318 (428)
T TIGR02037       256 QRGALVAQVLPG---SPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGKE  318 (428)
T ss_pred             CCceEEEEccCC---CChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            358999999999   8777665 99999999999998775  4455555544  467899999997533

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK11186 carboxy-terminal protease; Provisional

Probab=96.67  E-value=0.0034  Score=67.18  Aligned_cols=59  Identities=19%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeC--C---ccCCCCCHHHHHHHHHhcCC-ceEEEEecc
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKIN--N---HPTDGMSVKEARKLIDSSKE-KLSLTIRRE  282 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~IN--G---~~~~~~s~~eA~~~l~~s~~-~v~L~V~R~  282 (333)
                      .++|.+|.||   ++|++.+.|++||+|++||  |   .++.+++..+++.+|++.++ .|+|+|.|.
T Consensus       256 ~~~V~~vipG---sPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        256 YTVINSLVAG---GPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             eEEEEEccCC---ChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            5899999999   8888888899999999999  4   35668999999999988655 689999874

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=96.55  E-value=0.0083  Score=46.12  Aligned_cols=65  Identities=18%  Similarity=0.168  Sum_probs=46.2

Q ss_pred             eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhh-cCC
Q psy9829          89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRI-AHN  164 (333)
Q Consensus        89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~-~g~  164 (333)
                      +||+.+.         .++.+++|+.|.++|         ||.. ..|++||. +.||+..+++.  .....+++. .+.
T Consensus         3 ~lG~~~~---------~~~~~~~V~~v~~~s---------~a~~-~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~   63 (85)
T cd00988           3 GIGLELK---------YDDGGLVITSVLPGS---------PAAK-AGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT   63 (85)
T ss_pred             EEEEEEE---------EcCCeEEEEEecCCC---------CHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Confidence            6677664         134689999999966         4444 35799999 58999999886  444455543 456


Q ss_pred             ceEEEEEE
Q psy9829         165 CISAQIKR  172 (333)
Q Consensus       165 ~v~L~v~R  172 (333)
                      .+.|.+.|
T Consensus        64 ~i~l~v~r   71 (85)
T cd00988          64 KVRLTLKR   71 (85)
T ss_pred             EEEEEEEc
Confidence            68888876

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3605|consensus

Probab=96.36  E-value=0.0028  Score=66.70  Aligned_cols=57  Identities=21%  Similarity=0.407  Sum_probs=50.8

Q ss_pred             EEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC--ceEEEEec
Q psy9829         222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRR  281 (333)
Q Consensus       222 IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~--~v~L~V~R  281 (333)
                      +.|-.+.++   |+|++-|.|-.||+|++|||.+|-++-+..|+.+|++.+.  .|.|+|-+
T Consensus       675 VViAnmm~~---GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~  733 (829)
T KOG3605|consen  675 VVIANMMHG---GPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVS  733 (829)
T ss_pred             HHHHhcccC---ChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEec
Confidence            457888999   9999999999999999999999999999999999999886  46666643

>KOG4371|consensus

Probab=96.32  E-value=0.013  Score=64.52  Aligned_cols=143  Identities=20%  Similarity=0.315  Sum_probs=93.5

Q ss_pred             CCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCCceEEEEEEeeccCC-CCCCCCCCCCCCce-eEEeeecCC
Q psy9829         127 DQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHNCISAQIKRTHFNYD-QPEKGEMSFRKGDV-FHVIDTLHN  201 (333)
Q Consensus       127 ~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~~v~L~v~R~~~~~~-~p~~~~l~~~~g~~-~hv~~sl~~  201 (333)
                      +.||-.+--|++||. +.||++.+.|.+  .++.-++..+..+.|-|.|.++... .|..+.+...+--. ..+.     
T Consensus      1178 ~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~----- 1252 (1332)
T KOG4371|consen 1178 SEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLL----- 1252 (1332)
T ss_pred             cCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccchhhhhhcccchhhhheee-----
Confidence            445555556799999 689999999975  4444556677788898988554331 12111111100000 0000     


Q ss_pred             Cccccccceeecccccc-----cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceE
Q psy9829         202 GVVGSWQVFRIDFGIIL-----GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS  276 (333)
Q Consensus       202 ~~lG~~~~~~~d~G~~l-----~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~  276 (333)
                            ...+...|+.+     ..+|||..|...   ++|.-.|.|+.||++...+|.+.++.+...--..++-.-+-+.
T Consensus      1253 ------~~p~~~~~~~~~~~~~s~~~~~~~~~~~---~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~ 1323 (1332)
T KOG4371|consen 1253 ------KKPMATLGLSLAKRTMSDGIFIRNIAQD---SAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQ 1323 (1332)
T ss_pred             ------ecccccccccccccCcCCceeeeccccc---ccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchh
Confidence                  00111223333     258999999998   7888899999999999999999999988776666666667777


Q ss_pred             EEEeccC
Q psy9829         277 LTIRREV  283 (333)
Q Consensus       277 L~V~R~~  283 (333)
                      ++++|+.
T Consensus      1324 ~~~~~~q 1330 (1332)
T KOG4371|consen 1324 ITVTREQ 1330 (1332)
T ss_pred             heehhhh
Confidence            7777754

>PRK10139 serine endoprotease; Provisional

Probab=96.17  E-value=0.014  Score=59.79  Aligned_cols=65  Identities=26%  Similarity=0.405  Sum_probs=49.6

Q ss_pred             ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829         214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  284 (333)
Q Consensus       214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~  284 (333)
                      +|+....|++|.+|.++   ++|++- .|++||+|++|||+...+  .++....|..  ..+.+.|+|.|+..
T Consensus       284 lgl~~~~Gv~V~~V~~~---SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~  350 (455)
T PRK10139        284 FNLDVQRGAFVSEVLPN---SGSAKA-GVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGK  350 (455)
T ss_pred             cCCCCCCceEEEEECCC---ChHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            34433468999999999   776654 599999999999988764  5666666654  46789999988763

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=96.06  E-value=0.016  Score=55.27  Aligned_cols=60  Identities=17%  Similarity=0.220  Sum_probs=46.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~  285 (333)
                      .|+.|..+.++   ++|++- .|+.||+|++|||+++.+  .+++.+++...  .+.+.|+|.|+...
T Consensus       191 ~G~~v~~v~~~---s~a~~a-GLr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       191 EGYRLNPGKDP---SLFYKS-GLQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             eEEEEEecCCC---CHHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence            47899999998   766544 599999999999988774  45566667663  35899999998643

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3542|consensus

Probab=96.03  E-value=0.0045  Score=65.63  Aligned_cols=55  Identities=31%  Similarity=0.491  Sum_probs=47.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      .+|||-++.||   +.|++. .|+.||.||++||++.++++.+.|+.+|++.. .|+|+|
T Consensus       562 fgifV~~V~pg---skAa~~-GlKRgDqilEVNgQnfenis~~KA~eiLrnnt-hLtltv  616 (1283)
T KOG3542|consen  562 FGIFVAEVFPG---SKAARE-GLKRGDQILEVNGQNFENISAKKAEEILRNNT-HLTLTV  616 (1283)
T ss_pred             ceeEEeeecCC---chHHHh-hhhhhhhhhhccccchhhhhHHHHHHHhcCCc-eEEEEE
Confidence            58999999999   666666 49999999999999999999999999999854 455555

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=95.63  E-value=0.029  Score=55.50  Aligned_cols=58  Identities=22%  Similarity=0.278  Sum_probs=45.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      .+++|.++.++   ++|++- .|++||+|++|||+...+  .++..+.++.  ..+.+.|+|.|+.
T Consensus       278 ~Gv~V~~V~~~---spA~~a-GL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g  337 (351)
T TIGR02038       278 RGIVITGVDPN---GPAARA-GILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQG  337 (351)
T ss_pred             ccceEeecCCC---ChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence            58999999999   776654 599999999999987664  4555555654  4678999999875

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=95.61  E-value=0.031  Score=43.09  Aligned_cols=57  Identities=12%  Similarity=0.118  Sum_probs=42.6

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc--CCceEEEEEE
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA--HNCISAQIKR  172 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~--g~~v~L~v~R  172 (333)
                      ...|++|+.|.+||.         |.. .+|++||. +.+|+..++.......++...  +..+.|.+.|
T Consensus         8 ~~~Gv~V~~V~~~sp---------a~~-aGL~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r   67 (79)
T cd00991           8 AVAGVVIVGVIVGSP---------AEN-AVLHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLP   67 (79)
T ss_pred             cCCcEEEEEECCCCh---------HHh-cCCCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEE
Confidence            456999999999764         443 35799999 689999988776555566543  5668888877

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=95.54  E-value=0.03  Score=43.15  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=41.8

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc--CCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA--HNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~--g~~v~L~v~R  172 (333)
                      ..+++|++|.++|         ||.. ..|++||. +.+|+..+++.....++++..  +..+.+.+.|
T Consensus        23 ~~g~~V~~v~~~s---------~a~~-~gl~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r   81 (90)
T cd00987          23 TKGVLVASVDPGS---------PAAK-AGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLR   81 (90)
T ss_pred             CCEEEEEEECCCC---------HHHH-cCCCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            4589999999965         4443 34799999 589999988876555566553  6678888876

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10942 serine endoprotease; Provisional

Probab=95.47  E-value=0.028  Score=57.93  Aligned_cols=60  Identities=23%  Similarity=0.382  Sum_probs=46.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~  285 (333)
                      .|++|.+|.++   ++|++- .|++||+|++|||+...+  .+|....+...  .+++.|.|.|+...
T Consensus       311 ~GvlV~~V~~~---SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~~  372 (473)
T PRK10942        311 RGAFVSQVLPN---SSAAKA-GIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGKP  372 (473)
T ss_pred             CceEEEEECCC---ChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCeE
Confidence            58999999999   776654 599999999999988765  45555566543  56899999887643

>PRK10898 serine endoprotease; Provisional

Probab=95.12  E-value=0.045  Score=54.25  Aligned_cols=58  Identities=19%  Similarity=0.329  Sum_probs=43.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHH--hcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID--SSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~--~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++- .|++||+|++|||+...+.  ++-...|.  ...+.+.|.|.|+.
T Consensus       279 ~Gv~V~~V~~~---spA~~a-GL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g  338 (353)
T PRK10898        279 QGIVVNEVSPD---GPAAKA-GIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDD  338 (353)
T ss_pred             CeEEEEEECCC---ChHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            58999999999   776653 5999999999999876543  33344443  34568999998875

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=95.07  E-value=0.027  Score=57.44  Aligned_cols=56  Identities=20%  Similarity=0.228  Sum_probs=42.3

Q ss_pred             EEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHH--HhcCCceEEEEeccCC
Q psy9829         223 FVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI--DSSKEKLSLTIRREVP  284 (333)
Q Consensus       223 fI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l--~~s~~~v~L~V~R~~~  284 (333)
                      +|.++.++   ++|++- .|++||+|++|||+...+.  +|....+  ..-.+++.++|.|+..
T Consensus       129 lV~~V~~~---SpA~kA-GLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk  186 (449)
T PRK10779        129 VVGEIAPN---SIAAQA-QIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGS  186 (449)
T ss_pred             cccccCCC---CHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCc
Confidence            58999999   777655 6999999999999987765  3333333  3334679999999865

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=95.06  E-value=0.026  Score=54.43  Aligned_cols=60  Identities=18%  Similarity=0.261  Sum_probs=45.1

Q ss_pred             EEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCCCCC
Q psy9829         225 KEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPT  287 (333)
Q Consensus       225 ~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~~~~  287 (333)
                      -++.||++ ......-.|+.||++.+|||.++.+  .++|.++++.-.  ..++|+|.|++.+.+
T Consensus       209 Yrl~Pgkd-~~lF~~~GLq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~~~  270 (276)
T PRK09681        209 YAVKPGAD-RSLFDASGFKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGARHD  270 (276)
T ss_pred             EEECCCCc-HHHHHHcCCCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEEEE
Confidence            35678733 3445567899999999999998874  567778887644  479999999986543

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=94.87  E-value=0.075  Score=40.63  Aligned_cols=54  Identities=15%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      .|+.|++|.+||.         |.. . |++||. +.+|+..++.......+++.  .+..+++.+.|
T Consensus         8 ~Gv~V~~V~~~s~---------A~~-g-L~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r   64 (79)
T cd00986           8 HGVYVTSVVEGMP---------AAG-K-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKR   64 (79)
T ss_pred             cCEEEEEECCCCc---------hhh-C-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            4799999999764         443 3 799999 58999988776444455553  35568888876

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=94.85  E-value=0.06  Score=40.87  Aligned_cols=54  Identities=13%  Similarity=0.019  Sum_probs=37.6

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      ++.++.|++|.+||.|         .. .+|++||+ +.+|+..+++..   ++++.  .+..+.+.+.|
T Consensus        10 ~~~~~~V~~V~~~s~a---------~~-aGl~~GD~I~~Ing~~v~~~~---~~l~~~~~~~~v~l~v~r   66 (80)
T cd00990          10 EEGLGKVTFVRDDSPA---------DK-AGLVAGDELVAVNGWRVDALQ---DRLKEYQAGDPVELTVFR   66 (80)
T ss_pred             cCCcEEEEEECCCChH---------HH-hCCCCCCEEEEECCEEhHHHH---HHHHhcCCCCEEEEEEEE
Confidence            3567999999997754         33 34799999 589888876632   23433  45567788776

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=94.71  E-value=0.068  Score=40.31  Aligned_cols=55  Identities=9%  Similarity=0.042  Sum_probs=39.9

Q ss_pred             CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc-CCceEEEEEE
Q psy9829         108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA-HNCISAQIKR  172 (333)
Q Consensus       108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~-g~~v~L~v~R  172 (333)
                      ..++|+.|.++|.         |.. .+|++||+ +.+|+..+++.....++++.. +..+.+.+.|
T Consensus        12 ~~~~V~~v~~~s~---------a~~-~gl~~GD~I~~ing~~i~~~~~~~~~l~~~~~~~~~l~v~r   68 (79)
T cd00989          12 IEPVIGEVVPGSP---------AAK-AGLKAGDRILAINGQKIKSWEDLVDAVQENPGKPLTLTVER   68 (79)
T ss_pred             cCcEEEeECCCCH---------HHH-cCCCCCCEEEEECCEECCCHHHHHHHHHHCCCceEEEEEEE
Confidence            4589999999764         443 35799999 589999988765444556553 5567888876

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=93.20  E-value=0.37  Score=38.86  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=35.2

Q ss_pred             CeEEEEEEccCc------ccCccccCCCCCCCCEEEEeCCccCCC-CCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRL------DNNASAGTHQLAEGDVLLKINNHPTDG-MSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~------~ag~Aa~dg~L~~GD~Il~ING~~~~~-~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+.-|.+|.+|.      ++-++...-++++||.|++|||+.+.. ....  ..+...+...+.|+|.+...
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~--~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPY--RLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HH--HHHHTTTTSEEEEEEE-STT
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHH--HHhcccCCCEEEEEEecCCC
Confidence            356678888761      112333445789999999999998654 4544  34555566689999977653

>PRK11186 carboxy-terminal protease; Provisional

Probab=92.97  E-value=0.18  Score=54.19  Aligned_cols=67  Identities=15%  Similarity=0.016  Sum_probs=44.6

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEce-----eeccCcc--hhhhhh
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVID-----TLHNGVV--GSWQVF  159 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd-----~dv~gv~--~a~~al  159 (333)
                      .|+|+.+.-         .|..++|.+|+|||         ||+...+|++||+ +.||+     ++|.|..  ..+..|
T Consensus       244 ~GIGa~l~~---------~~~~~~V~~vipGs---------PA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~li  305 (667)
T PRK11186        244 EGIGAVLQM---------DDDYTVINSLVAGG---------PAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALI  305 (667)
T ss_pred             eEEEEEEEE---------eCCeEEEEEccCCC---------hHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHh
Confidence            367776651         23469999999976         5565446799999 58883     3555543  344455


Q ss_pred             hh-cCCceEEEEEE
Q psy9829         160 RI-AHNCISAQIKR  172 (333)
Q Consensus       160 r~-~g~~v~L~v~R  172 (333)
                      +- .|..|+|.|+|
T Consensus       306 rG~~Gt~V~LtV~r  319 (667)
T PRK11186        306 KGPKGSKVRLEILP  319 (667)
T ss_pred             cCCCCCEEEEEEEe
Confidence            42 57778999877

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=92.68  E-value=0.24  Score=50.28  Aligned_cols=67  Identities=19%  Similarity=0.135  Sum_probs=51.0

Q ss_pred             eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-cCC
Q psy9829          89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-AHN  164 (333)
Q Consensus        89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-~g~  164 (333)
                      |+|+.+.      -  .++-+++|.+.++|+         ||+.-+ +|+||+ +.||+.++.+++  .++..+|- .|.
T Consensus       101 GiG~~i~------~--~~~~~~~V~s~~~~~---------PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt  162 (406)
T COG0793         101 GIGIELQ------M--EDIGGVKVVSPIDGS---------PAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGT  162 (406)
T ss_pred             ceeEEEE------E--ecCCCcEEEecCCCC---------hHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCC
Confidence            7888876      2  122789999999954         777655 899999 699999999996  35555554 466


Q ss_pred             ceEEEEEEe
Q psy9829         165 CISAQIKRT  173 (333)
Q Consensus       165 ~v~L~v~R~  173 (333)
                      .|+|.+.|.
T Consensus       163 ~V~L~i~r~  171 (406)
T COG0793         163 KVTLTILRA  171 (406)
T ss_pred             eEEEEEEEc
Confidence            699998884

>TIGR00054 RIP metalloprotease RseP

Probab=91.82  E-value=0.24  Score=50.22  Aligned_cols=56  Identities=18%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      +.+|.++.++   ++|++ +.|++||+|++|||+...+.  ++..+.+-...+.+.+.+.|+
T Consensus       129 g~~V~~V~~~---SpA~~-AGL~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~  184 (420)
T TIGR00054       129 GPVIELLDKN---SIALE-AGIEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAE  184 (420)
T ss_pred             CceeeccCCC---CHHHH-cCCCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEe
Confidence            5679999999   77665 46999999999999876654  455555555447888888874

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3552|consensus

Probab=91.53  E-value=0.28  Score=54.12  Aligned_cols=53  Identities=13%  Similarity=0.206  Sum_probs=45.0

Q ss_pred             eEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCCceEEEEEEe
Q psy9829         110 TKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHNCISAQIKRT  173 (333)
Q Consensus       110 i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~~v~L~v~R~  173 (333)
                      +.|-.|.+|         ||+.|+|  .|||. +.|||.+|....  ..++.+|.+...|.|.|.|.
T Consensus        77 viVr~VT~G---------Gps~GKL--~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP  132 (1298)
T KOG3552|consen   77 VIVRFVTEG---------GPSIGKL--QPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP  132 (1298)
T ss_pred             eEEEEecCC---------CCccccc--cCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence            467788885         6889987  99999 589999998875  66889999999999999883

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=91.49  E-value=0.56  Score=47.13  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=47.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-c
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-A  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-~  162 (333)
                      -.|+|+.+.--.++-   +...+++|+.|.+||         ||+. .+|++||+ +.||+.++.+..  .....|+. .
T Consensus        84 ~~GiG~~~~~~~~~~---~~~~g~~V~~V~~~S---------PA~~-aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~  150 (389)
T PLN00049         84 VTGVGLEVGYPTGSD---GPPAGLVVVAPAPGG---------PAAR-AGIRPGDVILAIDGTSTEGLSLYEAADRLQGPE  150 (389)
T ss_pred             ceEEEEEEEEccCCC---CccCcEEEEEeCCCC---------hHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            358888875211110   012479999999976         4454 34799999 589999998763  22334432 5


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..+.|.|+|
T Consensus       151 g~~v~ltv~r  160 (389)
T PLN00049        151 GSSVELTLRR  160 (389)
T ss_pred             CCEEEEEEEE
Confidence            5668888776

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=91.08  E-value=0.84  Score=46.80  Aligned_cols=127  Identities=11%  Similarity=0.145  Sum_probs=74.5

Q ss_pred             eEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEEeeccCCCCCCCCCCCCCC
Q psy9829         112 PHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKG  190 (333)
Q Consensus       112 is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R~~~~~~~p~~~~l~~~~g  190 (333)
                      |..|.|||.|         . +++|++||+ +.||+..+.....-..++  .+..+.+.|.++....             
T Consensus         2 I~~V~pgSpA---------e-~AGLe~GD~IlsING~~V~Dw~D~~~~l--~~e~l~L~V~~rdGe~-------------   56 (433)
T TIGR03279         2 ISAVLPGSIA---------E-ELGFEPGDALVSINGVAPRDLIDYQFLC--ADEELELEVLDANGES-------------   56 (433)
T ss_pred             cCCcCCCCHH---------H-HcCCCCCCEEEEECCEECCCHHHHHHHh--cCCcEEEEEEcCCCeE-------------
Confidence            6788998865         2 246899999 589998887664322233  3456777775211000             


Q ss_pred             ceeEEeeecCCCccccccceeeccccccc-------------CeE-EEEEEccCcccCccccCCCCCCCCEEEEe---CC
Q psy9829         191 DVFHVIDTLHNGVVGSWQVFRIDFGIILG-------------NKI-FVKEVTHRLDNNASAGTHQLAEGDVLLKI---NN  253 (333)
Q Consensus       191 ~~~hv~~sl~~~~lG~~~~~~~d~G~~l~-------------~~I-fI~~I~~g~~ag~Aa~dg~L~~GD~Il~I---NG  253 (333)
                        ..+.  +..       ...+++|+.+.             |.. ||--.=+|-+.++--+|     .|--|+.   |=
T Consensus        57 --~~l~--Ie~-------~~dedlG~~f~~~~~d~~~~C~N~C~FCFidQlP~gmR~sLY~KD-----DDyRLSFL~Gny  120 (433)
T TIGR03279        57 --HQIE--IEK-------DLDEDLGLEFTTALFDGLIQCNNRCPFCFIDQQPPGKRESLYLKD-----DDYRLSFLYGSY  120 (433)
T ss_pred             --EEEE--Eec-------CCCCCCcEEeccccCCcccccCCcCceEeccCCCCCCcCcceecc-----Ccchhhhhccce
Confidence              0000  000       00122333222             222 66666666555555444     3333332   44


Q ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         254 HPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       254 ~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      ..+.||+-+|-.++++.--+.+.++|
T Consensus       121 iTLTNl~~~d~~RI~~~~lspl~iSV  146 (433)
T TIGR03279       121 LTLTNLPPAEWQRIEQLRLSPLYVSV  146 (433)
T ss_pred             eeecCCCHHHHHHHHHcCCCCEEEEE
Confidence            77999999999999999999999998

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=91.08  E-value=0.34  Score=46.26  Aligned_cols=56  Identities=9%  Similarity=0.095  Sum_probs=43.3

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      ..|..|+.+.+|+.         |+. .+||+||+ +.+|+.++++.....+++..  .+..++|.|.|
T Consensus       190 ~~G~~v~~v~~~s~---------a~~-aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R  248 (259)
T TIGR01713       190 LEGYRLNPGKDPSL---------FYK-SGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVER  248 (259)
T ss_pred             eeEEEEEecCCCCH---------HHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence            35999999999764         443 56899999 68999999888655556654  34578999988

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3606|consensus

Probab=90.82  E-value=0.54  Score=45.49  Aligned_cols=57  Identities=9%  Similarity=-0.084  Sum_probs=43.9

Q ss_pred             ceeeEEEecccCC---CCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc
Q psy9829          88 STFVGSVLGARGA---LDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV  153 (333)
Q Consensus        88 ~~~g~~i~gg~d~---p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~  153 (333)
                      ..|||-|--|+--   |+=-..-||||||+..|||.|         +..+=|-+||- |-||++-|.|.+
T Consensus       171 kPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLA---------eSTGLLaVnDEVlEVNGIEVaGKT  231 (358)
T KOG3606|consen  171 KPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLA---------ESTGLLAVNDEVLEVNGIEVAGKT  231 (358)
T ss_pred             CCceEEEecCceEEeccccccccCceEEEeecCCccc---------cccceeeecceeEEEcCEEecccc
Confidence            4799999877654   432225699999999998765         54555699999 689999999986

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=90.81  E-value=0.63  Score=47.27  Aligned_cols=67  Identities=27%  Similarity=0.383  Sum_probs=44.2

Q ss_pred             cccc-cCeEEEEEEcc-----CcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC-CceEEEEeccCC
Q psy9829         215 GIIL-GNKIFVKEVTH-----RLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTIRREVP  284 (333)
Q Consensus       215 G~~l-~~~IfI~~I~~-----g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~-~~v~L~V~R~~~  284 (333)
                      |+.| ..|++|-...+     |...++| ....|++||+|++|||+...  +.+|..++++... +.+.|+|.|+..
T Consensus        99 GI~l~t~GVlVvg~~~v~~~~g~~~SPA-a~AGLq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~Ge  172 (402)
T TIGR02860        99 GVKLNTKGVLVVGFSDIETEKGKIHSPG-EEAGIQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGGK  172 (402)
T ss_pred             EEEEecCEEEEEEEEcccccCCCCCCHH-HHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECCE
Confidence            4444 24666644432     2122444 34569999999999998865  4567777777754 578999988753

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=90.11  E-value=0.54  Score=46.01  Aligned_cols=66  Identities=17%  Similarity=0.278  Sum_probs=48.1

Q ss_pred             ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCC-CHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGM-SVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~-s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      +|+....|.+|.++.++   ++|++.| ++.||+|+++||....+. .+.++..... ..+.+.+++.|+..
T Consensus       264 ~g~~~~~G~~V~~v~~~---spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~-~g~~v~~~~~r~g~  330 (347)
T COG0265         264 LGLPVAAGAVVLGVLPG---SPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNR-PGDEVALKLLRGGK  330 (347)
T ss_pred             cCCCCCCceEEEecCCC---ChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccC-CCCEEEEEEEECCE
Confidence            34444457899999999   8877764 889999999999887665 3333333333 56789999999843

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=90.01  E-value=0.45  Score=48.72  Aligned_cols=49  Identities=20%  Similarity=0.286  Sum_probs=35.7

Q ss_pred             EEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         224 VKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       224 I~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      |..|.|+   ++|++- .|++||+|++|||+.+.+  ..+....+.  .+.+.|.|.
T Consensus         2 I~~V~pg---SpAe~A-GLe~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~   50 (433)
T TIGR03279         2 ISAVLPG---SIAEEL-GFEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVL   50 (433)
T ss_pred             cCCcCCC---CHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEE
Confidence            5678888   666443 699999999999988754  445555553  367888886

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=89.46  E-value=1.5  Score=41.90  Aligned_cols=63  Identities=24%  Similarity=0.212  Sum_probs=46.0

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPRP  286 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~~~  286 (333)
                      +|+=-.+.||++ +.+.-.-.||+||+.++||+.++  -..+++-++|+.  +.+.++|+|.|++.++
T Consensus       205 ki~Gyr~~pgkd-~slF~~sglq~GDIavaiNnldl--tdp~~m~~llq~l~~m~s~qlTv~R~G~rh  269 (275)
T COG3031         205 KIEGYRFEPGKD-GSLFYKSGLQRGDIAVAINNLDL--TDPEDMFRLLQMLRNMPSLQLTVIRRGKRH  269 (275)
T ss_pred             ceEEEEecCCCC-cchhhhhcCCCcceEEEecCccc--CCHHHHHHHHHhhhcCcceEEEEEecCccc
Confidence            466666777743 44444456999999999999553  346777777776  5568999999998765

>TIGR00225 prc C-terminal peptidase (prc)

Probab=88.44  E-value=0.95  Score=44.26  Aligned_cols=66  Identities=18%  Similarity=0.114  Sum_probs=45.2

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-cC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-AH  163 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-~g  163 (333)
                      .+||+.+.       +  .+.+++|+.|.+||.         |..- +|++||+ +.||+..+++..  ....+++. .+
T Consensus        51 ~~lG~~~~-------~--~~~~~~V~~V~~~sp---------A~~a-GL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g  111 (334)
T TIGR00225        51 EGIGIQVG-------M--DDGEIVIVSPFEGSP---------AEKA-GIKPGDKIIKINGKSVAGMSLDDAVALIRGKKG  111 (334)
T ss_pred             EEEEEEEE-------E--ECCEEEEEEeCCCCh---------HHHc-CCCCCCEEEEECCEECCCCCHHHHHHhccCCCC
Confidence            47888775       1  234899999999764         4432 3799999 589999998763  22334432 46


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..+.|.+.|
T Consensus       112 ~~v~l~v~R  120 (334)
T TIGR00225       112 TKVSLEILR  120 (334)
T ss_pred             CEEEEEEEe
Confidence            667777776

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=88.19  E-value=0.79  Score=45.37  Aligned_cols=56  Identities=9%  Similarity=-0.047  Sum_probs=42.0

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      ..|++|++|.+||         ||+. .+|++||+ +.+|+..+++...-.++++.  .+..+.|.|.|
T Consensus       277 ~~Gv~V~~V~~~s---------pA~~-aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R  335 (351)
T TIGR02038       277 LRGIVITGVDPNG---------PAAR-AGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLR  335 (351)
T ss_pred             cccceEeecCCCC---------hHHH-CCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            3699999999966         4454 35799999 58999998887544455543  46678888887

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>KOG3938|consensus

Probab=87.93  E-value=0.38  Score=46.36  Aligned_cols=52  Identities=15%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK  274 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~  274 (333)
                      +--|||.|.+|   +.-.+=--.|+||.|=+|||+++-+..|=|..++|+.-...
T Consensus       149 GyAFIKrIkeg---svidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg  200 (334)
T KOG3938|consen  149 GYAFIKRIKEG---SVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG  200 (334)
T ss_pred             ceeeeEeecCC---chhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence            34699999999   77766557999999999999999999999999999986543

>PRK10898 serine endoprotease; Provisional

Probab=87.63  E-value=1  Score=44.77  Aligned_cols=56  Identities=11%  Similarity=0.082  Sum_probs=40.9

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      ..|++|++|.+||         ||+. .+|++||+ +.+|+..+++...-..++..  .+..+.|.+.|
T Consensus       278 ~~Gv~V~~V~~~s---------pA~~-aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R  336 (353)
T PRK10898        278 LQGIVVNEVSPDG---------PAAK-AGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMR  336 (353)
T ss_pred             CCeEEEEEECCCC---------hHHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            4799999999965         5554 35799999 58999998776433344433  45668888887

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=87.51  E-value=1.1  Score=39.67  Aligned_cols=74  Identities=8%  Similarity=0.003  Sum_probs=47.7

Q ss_pred             CCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccc-cccEEEEEecCchhhHHhhhcCCCcchhhHHHHHhh
Q psy9829           7 SKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQ-FYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSR   81 (333)
Q Consensus         7 ~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~-l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~raer   81 (333)
                      ...++++|+. +++..+++|+++|+|-.......++... -..++||+.++.....+++..|..++.+.+..+.++
T Consensus        71 ~~g~~yg~~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r  145 (186)
T PRK10078         71 ANGLYYGVGI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLAR  145 (186)
T ss_pred             HhCCccCCcH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4567889998 5999999999999986655444444432 123467777755555567866654444445555543

>KOG3651|consensus

Probab=87.18  E-value=1.8  Score=42.65  Aligned_cols=68  Identities=18%  Similarity=0.091  Sum_probs=48.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh---c
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI---A  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~---~  162 (333)
                      ..-.|+||-||  .|+.    |-+||-.|--+.         ||..+++++.||- +.||+++|-|.+ .+.+.++   +
T Consensus        15 ~nliGISIGGG--apyC----PClYiVQvFD~t---------PAa~dG~i~~GDEi~avNg~svKGkt-KveVAkmIQ~~   78 (429)
T KOG3651|consen   15 KNLIGISIGGG--APYC----PCLYIVQVFDKT---------PAAKDGRIRCGDEIVAVNGISVKGKT-KVEVAKMIQVS   78 (429)
T ss_pred             ccceeEEecCC--CCcC----CeEEEEEeccCC---------chhccCccccCCeeEEecceeecCcc-HHHHHHHHHHh
Confidence            44678998776  4553    679999988854         6666778899999 589999999985 3344443   4


Q ss_pred             CCceEEEE
Q psy9829         163 HNCISAQI  170 (333)
Q Consensus       163 g~~v~L~v  170 (333)
                      -+.|.+..
T Consensus        79 ~~eV~Ihy   86 (429)
T KOG3651|consen   79 LNEVKIHY   86 (429)
T ss_pred             ccceEEEe
Confidence            44455544

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=86.32  E-value=1.1  Score=46.95  Aligned_cols=57  Identities=19%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             ccccccc---CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCcc--CCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         213 DFGIILG---NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHP--TDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       213 d~G~~l~---~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~--~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      ..|+++.   +..-|+.+.++   |+|.+- .|++||+|++|||.+  ++...          +++.+.+.+-|..
T Consensus       452 ~LGl~v~~~~g~~~i~~V~~~---gPA~~A-Gl~~Gd~ivai~G~s~~l~~~~----------~~d~i~v~~~~~~  513 (558)
T COG3975         452 YLGLKVKSEGGHEKITFVFPG---GPAYKA-GLSPGDKIVAINGISDQLDRYK----------VNDKIQVHVFREG  513 (558)
T ss_pred             ccceEecccCCeeEEEecCCC---ChhHhc-cCCCccEEEEEcCccccccccc----------cccceEEEEccCC
Confidence            3455553   46789999999   777665 499999999999983  33333          4567777775543

>KOG1421|consensus

Probab=86.21  E-value=2  Score=46.37  Aligned_cols=133  Identities=14%  Similarity=0.169  Sum_probs=79.6

Q ss_pred             ceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh-cCCceEEEEEEeeccCCCCC--CCC
Q psy9829         109 STKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI-AHNCISAQIKRTHFNYDQPE--KGE  184 (333)
Q Consensus       109 ~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~-~g~~v~L~v~R~~~~~~~p~--~~~  184 (333)
                      -..|..+.+         +|||+..+  ++||+ |.||.+-.+++....+.|-. .|..++|+|.|-..+.+--.  ...
T Consensus       304 mLvV~~vL~---------~gpa~k~L--e~GDillavN~t~l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdl  372 (955)
T KOG1421|consen  304 MLVVETVLP---------EGPAEKKL--EPGDILLAVNSTCLNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQDL  372 (955)
T ss_pred             eEEEEEecc---------CCchhhcc--CCCcEEEEEcceehHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccc
Confidence            456778888         56888876  99999 79998888777666666644 78889999988332110000  000


Q ss_pred             CCCC-------CCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCC
Q psy9829         185 MSFR-------KGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD  257 (333)
Q Consensus       185 l~~~-------~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~  257 (333)
                      .+..       -|-++|-+        .-...+  .|-+.+. |.||.+-. |   +.+++-+ +. +-.|.+|||+.+.
T Consensus       373 h~itp~R~levcGav~hdl--------syq~ar--~y~lP~~-GvyVa~~~-g---sf~~~~~-~y-~~ii~~vanK~tP  435 (955)
T KOG1421|consen  373 HGITPDRFLEVCGAVFHDL--------SYQLAR--LYALPVE-GVYVASPG-G---SFRHRGP-RY-GQIIDSVANKPTP  435 (955)
T ss_pred             cCCCCceEEEEcceEecCC--------CHHHHh--hcccccC-cEEEccCC-C---CccccCC-cc-eEEEEeecCCcCC
Confidence            0000       01111111        111111  1112333 79998866 5   5555443 33 8889999999988


Q ss_pred             CC-CHHHHHHHHH
Q psy9829         258 GM-SVKEARKLID  269 (333)
Q Consensus       258 ~~-s~~eA~~~l~  269 (333)
                      ++ +..|+.+.|.
T Consensus       436 dLdaFidvlk~L~  448 (955)
T KOG1421|consen  436 DLDAFIDVLKELP  448 (955)
T ss_pred             CHHHHHHHHHhcc
Confidence            87 7777777763

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]

Probab=85.37  E-value=3.4  Score=40.67  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=55.5

Q ss_pred             HHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCcchhhHHHHHhhccccccceeeEEEecccCCC
Q psy9829          22 MMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGAL  101 (333)
Q Consensus        22 V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~raer~~qE~G~~~g~~i~gg~d~p  101 (333)
                      +-++|+.++||.+.+++...-...  |.  +||| +.+.|..+-.+-..+...+.+-+.+ +.+.|-.--+.=.|+.|.-
T Consensus       155 ~~~~g~~vilD~Sg~~L~~~L~~~--P~--lIKP-N~~EL~~~~g~~~~~~~d~i~~a~~-l~~~g~~~ViVSlG~~Gal  228 (310)
T COG1105         155 LRQQGAKVILDTSGEALLAALEAK--PW--LIKP-NREELEALFGRELTTLEDVIKAARE-LLAEGIENVIVSLGADGAL  228 (310)
T ss_pred             HHhcCCeEEEECChHHHHHHHccC--Cc--EEec-CHHHHHHHhCCCCCChHHHHHHHHH-HHHCCCCEEEEEecCcccE
Confidence            334599999999999997665555  65  8898 7888887766544433333333333 5555555555556788877


Q ss_pred             CCCCCCCceEeE
Q psy9829         102 DLANYDPSTKPH  113 (333)
Q Consensus       102 ~~~~~D~~i~is  113 (333)
                      .+ +.+...|++
T Consensus       229 ~~-~~~~~~~a~  239 (310)
T COG1105         229 LV-TAEGVYFAS  239 (310)
T ss_pred             EE-ccCCeEEEe
Confidence            76 355666665

>KOG3129|consensus

Probab=84.72  E-value=2.4  Score=39.69  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=43.1

Q ss_pred             EEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCC-CCHHHHHHHHHhcCC-ceEEEEeccCCC
Q psy9829         222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDG-MSVKEARKLIDSSKE-KLSLTIRREVPR  285 (333)
Q Consensus       222 IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~-~s~~eA~~~l~~s~~-~v~L~V~R~~~~  285 (333)
                      .+|.+|.|+   ++|+. +.||.||.|+.+.++...+ ..+.+-...-+...+ -+.++|.|...+
T Consensus       141 a~V~sV~~~---SPA~~-aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~  202 (231)
T KOG3129|consen  141 AVVDSVVPG---SPADE-AGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK  202 (231)
T ss_pred             EEEeecCCC---Chhhh-hCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence            689999999   66654 4699999999998865444 435554444454444 578889998765

>KOG0606|consensus

Probab=84.65  E-value=1.7  Score=49.09  Aligned_cols=52  Identities=25%  Similarity=0.390  Sum_probs=45.6

Q ss_pred             EEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         224 VKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       224 I~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      |-.|.+|   +.| ...+|+.+|.|+-+||++..++.|.|-.++|-++..+|.+.+
T Consensus       662 v~sv~eg---sPA-~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~t  713 (1205)
T KOG0606|consen  662 VGSVEEG---SPA-FEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRT  713 (1205)
T ss_pred             eeeecCC---CCc-cccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEe
Confidence            5677787   554 355899999999999999999999999999999999998877

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=83.97  E-value=2  Score=37.40  Aligned_cols=70  Identities=11%  Similarity=0.041  Sum_probs=47.0

Q ss_pred             CCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCcchhhHHHHHh
Q psy9829          10 CSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRS   80 (333)
Q Consensus        10 ~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~rae   80 (333)
                      .++.++. .+...+++|+.+|+|...+....++.....-++||+.++.....++++.|.....+.+..+..
T Consensus        75 ~~~g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~  144 (179)
T TIGR02322        75 LSYGIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLA  144 (179)
T ss_pred             ccccChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4556676 478888999999999987766665543223478999976655566887765444444444543

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=83.38  E-value=2.4  Score=41.94  Aligned_cols=57  Identities=18%  Similarity=0.363  Sum_probs=45.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      .|+|+..+.+.   +++.  |.|+.||.|++|||.+..  +.+|....+++  ..+.|++...|..
T Consensus       130 ~gvyv~~v~~~---~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~  188 (342)
T COG3480         130 AGVYVLSVIDN---SPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHN  188 (342)
T ss_pred             eeEEEEEccCC---cchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEecc
Confidence            47999999998   6664  689999999999997654  56777777765  5578999999743

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=82.85  E-value=3.6  Score=33.17  Aligned_cols=60  Identities=12%  Similarity=0.181  Sum_probs=35.1

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCC------ccccccCCE-EEEceeeccCcchhhhhhh-hcCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKG------EMSFRKGDV-FHVIDTLHNGVVGSWQVFR-IAHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g------~l~lr~gD~-I~Vnd~dv~gv~~a~~alr-~~g~~v~L~v~R  172 (333)
                      +.+.-|++|.+|..      +.|...      -+.+++||+ +.||+..+.....-..+|. .++..|.|.|.+
T Consensus        11 ~~~y~I~~I~~gd~------~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv~~   78 (88)
T PF14685_consen   11 NGGYRIARIYPGDP------WNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYRLLEGKAGKQVLLTVNR   78 (88)
T ss_dssp             TTEEEEEEE-BS-T------TSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-
T ss_pred             CCEEEEEEEeCCCC------CCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHHHhcccCCCEEEEEEec
Confidence            46788999999743      233221      135699999 5899999887654445554 488899999976

>KOG4407|consensus

Probab=82.54  E-value=1.5  Score=50.24  Aligned_cols=56  Identities=29%  Similarity=0.504  Sum_probs=50.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      -.|||++|.+.   +.|.-. .||-||+||.+|.....++--.+++..|+.....++|.|
T Consensus       143 eT~~~~eV~~n---~~~~~a-~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~  198 (1973)
T KOG4407|consen  143 ETIFIKEVQAN---GPAHYA-NLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHV  198 (1973)
T ss_pred             hhhhhhhhccC---ChhHHH-hhhccceeEEeecCcccchhhhhhhhhhccCCCCCCcee
Confidence            36999999999   665544 899999999999999999999999999999999988865

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=82.43  E-value=1.2  Score=43.17  Aligned_cols=56  Identities=13%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             eEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         110 TKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       110 i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      +.=-+|.||..+       .-....+||+||. +.+|+.++++...+.+++..  ....++|.|.|
T Consensus       206 l~GYrl~Pgkd~-------~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeR  264 (276)
T PRK09681        206 IVGYAVKPGADR-------SLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLR  264 (276)
T ss_pred             ceEEEECCCCcH-------HHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEE
Confidence            444567777643       3355678899999 69999999888655555554  35568899988

>KOG1421|consensus

Probab=81.21  E-value=2.8  Score=45.34  Aligned_cols=58  Identities=24%  Similarity=0.415  Sum_probs=45.3

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEeccCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVPR  285 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~~~~  285 (333)
                      -+-|+.+.++   |.|.  -.|++||.++++|+.++-  ..+++.++|+. ....+.|+|+|....
T Consensus       304 mLvV~~vL~~---gpa~--k~Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqe  362 (955)
T KOG1421|consen  304 MLVVETVLPE---GPAE--KKLEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQE  362 (955)
T ss_pred             eEEEEEeccC---Cchh--hccCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEE
Confidence            4789999999   6654  359999999999976543  46777778865 566899999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		9e-16
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		2e-07
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		2e-07
3lh5_A	251	Crystal Structure Of The Sh3-Guanylate Kinase Core		1e-15
3lh5_A	251	Crystal Structure Of The Sh3-Guanylate Kinase Core		3e-07
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		2e-15
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		3e-07
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		3e-07
3kfv_A	308	Crystal Structure Of The Sh3-Kinase Fragment Of Tig		3e-11
3e17_A	88	Crystal Structure Of The Second Pdz Domain From Hum		6e-09
2osg_A	83	Solution Structure And Binding Property Of The Doma		9e-09
2jwe_A	88	Solution Structure Of The Second Pdz Domain From Hu		2e-07
3cyy_A	92	The Crystal Structure Of Zo-1 Pdz2 In Complex With		2e-07
2rcz_A	81	Structure Of The Second Pdz Domain Of Zo-1 Length =		2e-07
3tsw_B	194	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		3e-07
3tsw_B	194	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		3e-07
3tvt_A	292	Structural Basis For Discs Large Interaction With P		4e-07
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		1e-06
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		2e-06
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		2e-06
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		2e-06

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 8   KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
           ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct: 263 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 320

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
           THF Y++     +SF KG+VF V+DTL+NG +GSW   RI  N
Sbjct: 103 THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 145

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
           RTHF Y++     +SF KG+VF V+DTL+NG +GSW   RI
Sbjct: 102 RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 142

>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain Of Zo-1 Length = 251

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 8   KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
           ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct: 131 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 188

>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain Of Zo-1 Length = 251

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
           RTHF Y++     +SF KG+VF V+DTL+NG +GSW   RI
Sbjct: 7   RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 47

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 8   KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
           ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  VK +R
Sbjct: 271 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 328

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
           THF Y++     +SF KG+VF V+DTL+NG +GSW   RI  N
Sbjct: 111 THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 153

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
           RTHF Y++     +SF KG+VF V+DTL+NG +GSW   RI
Sbjct: 110 RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 150

>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight Junction Protein 3 (Tjp3) In Apo-Form Length = 308

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 5   SDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL 64
           S +   S II+L  +R + ++ +H LLD+TP+A++RLNY Q+YPIV+F   E++  +K L
Sbjct: 177 SRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKAL 236
Query: 65  RAGIPKYHTNLARQRSRVLF 84
           R    ++    +R+ +R L+
Sbjct: 237 R----QWLAPASRRSTRRLY 252

>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona Occludens-2 Length = 88

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           ++G+ LG++IFVKE+T       +     L EGD++LKIN   T+ MS+ +ARKLI+ S+
Sbjct: 14  EYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR 70
Query: 273 EKLSLTIRREV 283
            KL L + R++
Sbjct: 71  GKLQLVVLRDL 81

>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain- Swapped Dimer Of Zo2pdz2 Length = 83

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           ++G+ LG++IFVKE+T       +     L EGD++LKIN   T+ MS+ +ARKLI+ S+
Sbjct: 14  EYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR 70
Query: 273 EKLSLTIRRE 282
            KL L + R+
Sbjct: 71  GKLQLVVLRD 80

>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human Zonula Occludens-1: A Dimeric Form With 3d Domain Swapping Length = 88

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           ++G+ L + IFVKE++    ++ +A    + EGDV+LKIN   T+ MS+ +A+ LI+ SK
Sbjct: 13  EYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 69
Query: 273 EKLSLTIRRE 282
            KL + ++R+
Sbjct: 70  GKLKMVVQRD 79

>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The Cx43 Peptide Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           ++G+ L + IFVKE++    ++ +A    + EGDV+LKIN   T+ MS+ +A+ LI+ SK
Sbjct: 16  EYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 72
Query: 273 EKLSLTIRRE 282
            KL + ++R+
Sbjct: 73  GKLKMVVQRD 82

>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1 Length = 81

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           ++G+ L + IFVKE++    ++ +A    + EGDV+LKIN   T+ MS+ +A+ LI+ SK
Sbjct: 14  EYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 70
Query: 273 EKLSLTIRRE 282
            KL + ++R+
Sbjct: 71  GKLKMVVQRD 80

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 16  LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNL 75
           ++++R++ ++G+H +LD++ NA+ RL  AQ YP+ +F++ ++  +V E+   + +     
Sbjct: 179 VASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKK 238
Query: 76  ARQRS-RVLFPVGSTFVGSVLG 96
             +R+ ++    G  F G V G
Sbjct: 239 TYERAIKMEQEFGEYFTGVVQG 260

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 35/49 (71%)
Query: 16  LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL 64
           + ++R + ++G+H +LD++ NA+ RL  AQ YPI IF++ ++  N+ E+
Sbjct: 185 VQSVRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEM 233

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 16  LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNL 75
           + ++R++ ++G+H +LD++ NAV RL  A  +PI IF+R  +  NV E+   I +     
Sbjct: 190 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 249
Query: 76  ARQRSRVL 83
           A  R+  L
Sbjct: 250 AFDRATKL 257

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 16  LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNL 75
           + ++R++ ++G+H +LD++ NAV RL  A  +PI IF+R  +  NV E+   I +     
Sbjct: 184 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 243
Query: 76  ARQRSRVL 83
           A  R+  L
Sbjct: 244 AFDRATKL 251

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 16  LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNL 75
           + ++R++ ++G+H +LD++ NAV RL  A  +PI IF+R  +  NV E+   I +     
Sbjct: 610 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 669
Query: 76  ARQRSRVL 83
           A  R+  L
Sbjct: 670 AFDRATKL 677

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	2e-17
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	9e-17
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	1e-16
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	8e-14
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-04
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	1e-13
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	1e-08
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	4e-08
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	6e-04
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	5e-13
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	1e-08
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	3e-08
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	5e-11
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	4e-04
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	9e-11
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	2e-10
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	2e-10
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-10
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	3e-10
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	6e-05
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	5e-04
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	4e-10
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	4e-10
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	1e-04
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	5e-10
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	5e-10
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	5e-10
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	9e-08
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	1e-06
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	7e-10
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	2e-09
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	7e-09
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-06
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	3e-08
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-06
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	5e-08
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	6e-08
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	1e-07
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	2e-07
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-07
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	3e-07
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	3e-07
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-07
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	5e-07
2awx_A	105	Synapse associated protein 97; membrane protein, s	6e-07
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	6e-07
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	7e-07
2opg_A	98	Multiple PDZ domain protein; structural protein, s	7e-07
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	8e-07
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	9e-07
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	1e-06
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	1e-06
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	1e-06
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	1e-06
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	2e-06
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-06
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	2e-06
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-06
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	2e-06
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-06
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-06
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	2e-06
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	2e-06
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-06
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	3e-06
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	3e-06
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	3e-06
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	3e-06
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	3e-06
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-06
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	4e-06
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	4e-06
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	4e-06
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	4e-06
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	4e-06
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	4e-06
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	5e-06
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	5e-06
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	5e-06
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	6e-06
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	6e-06
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	6e-06
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	7e-06
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-04
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	8e-06
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	8e-06
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	8e-06
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	8e-06
2fne_A	117	Multiple PDZ domain protein; structural protein, s	9e-06
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	9e-06
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-05
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	1e-05
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	1e-05
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-05
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-05
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-05
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-05
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-05
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-05
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	3e-05
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	3e-05
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	3e-05
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	3e-05
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	3e-05
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	3e-05
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	3e-05
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	3e-05
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	4e-05
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	4e-05
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	4e-05
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	4e-05
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	4e-05
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	6e-05
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	6e-05
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	6e-05
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	8e-05
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	8e-05
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	9e-05
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	9e-05
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	9e-05
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	9e-05
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-04
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-04
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	1e-04
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-04
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	1e-04
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-04
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-04
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-04
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-04
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	2e-04
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-04
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-04
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	2e-04
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	3e-04
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	3e-04
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	3e-04
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	3e-04
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	4e-04
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-04
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	4e-04
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	4e-04
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	4e-04
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	4e-04
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	5e-04
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	5e-04
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	5e-04
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	7e-04
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	7e-04
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	7e-04
3khf_A	99	Microtubule-associated serine/threonine-protein ki	8e-04
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	8e-04
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	8e-04
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	8e-04

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           ++G+ LG++IFVKE+T       +     L EGD++LKIN   T+ MS+ +ARKLI+ S+
Sbjct: 14  EYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR 70

Query: 273 EKLSLTIRREVPRPTAYQ 290
            KL L + R++     + 
Sbjct: 71  GKLQLVVLRDLEHHHHHH 88

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 73.6 bits (181), Expect = 9e-17
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           ++G+ L + IFVKE++    ++ +A    + EGDV+LKIN   T+ MS+ +A+ LI+ SK
Sbjct: 16  EYGLRLASHIFVKEIS---QDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 72

Query: 273 EKLSLTIRREVPRPT 287
            KL + ++R+     
Sbjct: 73  GKLKMVVQRDERATL 87

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 72.7 bits (179), Expect = 1e-16
 Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           ++G+ L + IFVKE++    ++ +A    + EGDV+LKIN   T+ MS+ +A+ LI+ SK
Sbjct: 14  EYGLRLASHIFVKEIS---QDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 70

Query: 273 EKLSLTIRRE 282
            KL + ++R+
Sbjct: 71  GKLKMVVQRD 80

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 71.1 bits (173), Expect = 8e-14
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 1   MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSN 60
            +E            + ++R++ ++G+H +LD++ NAV RL  A  +PI IF+R  +  N
Sbjct: 595 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLEN 654

Query: 61  VKELRAGI 68
           V E+   I
Sbjct: 655 VLEINKRI 662

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
              IF+ ++       A+A   +L   D +L +N      ++   A + +  +   + L 
Sbjct: 88  DPSIFITKIIP---GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY 144

Query: 279 IRREVPRPTAYQESTTLPGKENNYMDPLSTNYS-----SQNLYVQPPTRGGP 325
           + R  P      E   + G +           +       ++YV     GG 
Sbjct: 145 VMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGA 196

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 215 GIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK 274
           G   G  IF+  +        +  + +L +GD +L +N       S ++A   + ++ + 
Sbjct: 326 GGEDGEGIFISFILA---GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT 382

Query: 275 LSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQN 314
           +++  + + P   +  E+     +E      L +  +S  
Sbjct: 383 VTIIAQYK-PEEYSRFEAKIHDLREQLMNSSLGSGTASLR 421

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 69.9 bits (170), Expect = 1e-13
 Identities = 34/70 (48%), Positives = 49/70 (70%)

Query: 1   MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSN 60
             +    ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  
Sbjct: 264 PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQG 323

Query: 61  VKELRAGIPK 70
           VK +R  +  
Sbjct: 324 VKTMRMRLCP 333

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 163 HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
            +   +   RTHF Y++     +SF KG+VF V+DTL+NG +GSW   RI 
Sbjct: 101 SDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIG 151

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 105 NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
            Y    +     +    THF Y++     +SF KG+VF V+DTL+NG +GSW   RI  N
Sbjct: 94  VYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 153

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 214 FGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
             +  GN   IFV  V      ++ A    L EGD +L++NN     +  +EA   +   
Sbjct: 23  LRLAGGNDVGIFVAGVLE----DSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 78

Query: 272 KEKLSLTIRREVPRPTAYQESTTLPGKENNYM 303
            +   +TI  +  +   Y+        ++ Y+
Sbjct: 79  PKGEEVTILAQ-KKKDVYRRIVESDVGDSFYI 109

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 68.4 bits (166), Expect = 5e-13
 Identities = 34/70 (48%), Positives = 49/70 (70%)

Query: 1   MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSN 60
             +    ++ SGIIRL  I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL  ++K  
Sbjct: 256 PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQG 315

Query: 61  VKELRAGIPK 70
           VK +R  +  
Sbjct: 316 VKTMRMRLCP 325

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 54.9 bits (131), Expect = 1e-08
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 162 AHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
             +   +   RTHF Y++     +SF KG+VF V+DTL+NG +GSW   RI 
Sbjct: 92  ESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIG 143

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 54.2 bits (129), Expect = 3e-08
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 105 NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
            Y    +     +    THF Y++     +SF KG+VF V+DTL+NG +GSW   RI  N
Sbjct: 86  VYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 145

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 16/54 (29%), Positives = 37/54 (68%)

Query: 14  IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG 67
             ++++R++ ++G+H +LD++ NA+ RL  AQ YP+ +F++ ++  +V E+   
Sbjct: 177 TSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRR 230

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 10/48 (20%)

Query: 172 RTHFNYD------QPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
           R  F+YD       P +G + F+ GD+ HV +   +     WQ  R+ 
Sbjct: 9   RALFDYDPNRDDGLPSRG-LPFKHGDILHVTNASDD---EWWQARRVL 52

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 56.6 bits (137), Expect = 9e-11
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  G      + +     R+   + A    L  GDV+  I+   T  M+  EA+  I 
Sbjct: 17  FRLVGGKDFEQPLAIS----RVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIK 72

Query: 270 SSKEKLSLTIRREVPR 285
              + L+LT+ R    
Sbjct: 73  GCTDNLTLTVARSEHE 88

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  G      + +  +T        A    +A GD +L I+      ++  EA+  I 
Sbjct: 17  FRLQGGKDFNVPLSISRLT----PGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIR 72

Query: 270 SSKEKLSLTIRREVPR 285
           +  E+LSL + R +  
Sbjct: 73  ACGERLSLGLSRAITS 88

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  G      + +  +         A    +  GDV+L I+     GM+  EA+  I 
Sbjct: 19  FRLQGGKDFNMPLTISSLKD----GGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIK 74

Query: 270 SSKEKLSLTIRREVPRPTAYQESTT 294
           +    L++T++R      +   S+ 
Sbjct: 75  ACTGSLNMTLQRASAAAKSEPVSSG 99

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  G      + +  +         A    +  GDV+L I+     GM+  EA+  I 
Sbjct: 17  FRLQGGKDFNMPLTISSLKD----GGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIK 72

Query: 270 SSKEKLSLTIRRE 282
                L++T++RE
Sbjct: 73  GCTGSLNMTLQRE 85

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 19/51 (37%), Positives = 34/51 (66%)

Query: 15  RLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
            + ++R++ ++G+H +LD++ NAV RL  A  +PI IF+R  +  NV E+ 
Sbjct: 183 SVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 233

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 10/48 (20%)

Query: 172 RTHFNYDQ------PEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
           R  F+YD+        +  +SFR GDV HVID    G    WQ  R+ 
Sbjct: 5   RALFDYDKTKDCGFLSQA-LSFRFGDVLHVIDA---GDEEWWQARRVH 48

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 122 THFNYDQ------PEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
             F+YD+        +  +SFR GDV HVID    G    WQ  R+  +
Sbjct: 6   ALFDYDKTKDCGFLSQA-LSFRFGDVLHVIDA---GDEEWWQARRVHSD 50

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  G      + +  +T      + A   QL++GD+++ I+   TD M+  EA+  I 
Sbjct: 15  FRLQGGKDFNMPLTISRIT----PGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 70

Query: 270 SSKEKLSLTIRR 281
           S+   LSLT+++
Sbjct: 71  SASYNLSLTLQK 82

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
           G+ + + ++      + +  T  L  GD LL I+N   D  S+++A +++   ++ + L 
Sbjct: 134 GDPLVISDIKK---GSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 190

Query: 279 IRRE 282
           IR++
Sbjct: 191 IRKD 194

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 212 IDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
           +     L +   +  +     ++ +     L  GD ++ IN  PT+  + +EA +L+  S
Sbjct: 28  VFATETLSSPPLISYIEA---DSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 84

Query: 272 KEKLSLTIRREVPRP 286
                +T+  E    
Sbjct: 85  SITSKVTLEIEFDVA 99

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FRI  G      I V +V         A    L  GD+++ IN    +GM   EA+  I 
Sbjct: 16  FRITGGRDFHTPIMVTKVA----ERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIR 71

Query: 270 SSKEKLSLTIRR 281
            S   L L + R
Sbjct: 72  QSPSPLRLQLDR 83

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  GI     + +  +T      + A    L  GDV+L I+   T+ M+  +A+  I 
Sbjct: 19  FRLSGGIDFNQPLVITRITP----GSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK 74

Query: 270 SSKEKLSLTIRREVPRP 286
           ++  +L L I R   R 
Sbjct: 75  AASYQLCLKIDRAETRL 91

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 58.7 bits (141), Expect = 5e-10
 Identities = 27/67 (40%), Positives = 44/67 (65%)

Query: 4   ESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKE 63
            S +   S II+L  +R + ++ +H LLD+TP+A++RLNY Q+YPIV+F   E++  +K 
Sbjct: 176 VSRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKA 235

Query: 64  LRAGIPK 70
           LR  +  
Sbjct: 236 LRQWLAP 242

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 51.7 bits (123), Expect = 9e-08
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVV------GSWQVFRID 213
           RTHF  +      + F +GDVFHV+DTLH G        G W   R+ 
Sbjct: 8   RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMG 55

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVV------GSWQ 157
           THF  +      + F +GDVFHV+DTLH G        G W 
Sbjct: 9   THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWL 50

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  G      + +  V       + A    L  GD++  IN   T+ M+  EA+  I 
Sbjct: 22  FRLVGGRDFSAPLTISRVHA----GSKAALAALCPGDLIQAINGESTELMTHLEAQNRIK 77

Query: 270 SSKEKLSLTIRR 281
              + L+L++  
Sbjct: 78  GCHDHLTLSVSS 89

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FRI  G      I V +VT        A    L  GD+++ IN    + M   EA+  I 
Sbjct: 20  FRISGGRDFHTPIIVTKVT----ERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIR 75

Query: 270 SSKEKLSLTIRRE 282
            S   L L + R 
Sbjct: 76  QSASPLRLQLDRS 88

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+V ++       A+    +L  GD +L +N+   + +  ++A   + ++ + + L + +
Sbjct: 132 IYVTKIIE---GGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188

Query: 282 EVPRPTA 288
                T 
Sbjct: 189 PSNAETM 195

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 21/113 (18%)

Query: 205 GSWQVFRID-------FGIIL-----------GNKIFVKEVTHRLDNNASAGTHQLAEGD 246
           GS +   I         G  +              IF+ ++   +   A+A   +L   D
Sbjct: 2   GSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKI---IPGGAAAQDGRLRVND 58

Query: 247 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKE 299
            +L +N      ++   A + +  +   + L + R  P      E   + G +
Sbjct: 59  SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPK 111

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           + +  V        +     +  GD LL ++     G +  EA  ++    ++ +L I  
Sbjct: 137 VVITCVRP---GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEY 193

Query: 282 EVP 284
           +V 
Sbjct: 194 DVS 196

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             +  GI    K  V  +        +A + QL  GD +  +N          E   L+ 
Sbjct: 23  LTVSGGIDKDGKPRVSNL---RQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK 79

Query: 270 SSKEKLSLTIRREVPRPTAYQESTTLPGKE 299
           +  E++ L +  E+P  +    S      E
Sbjct: 80  NVGERVVLEVEYELPPVSIQGSSVMFRTVE 109

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 198 TLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD 257
           TL            I  G      +++ +V    DN  +A    +A GD +  +N     
Sbjct: 24  TLQKDAQNLIG-ISIGGGAQYCPCLYIVQV---FDNTPAALDGTVAAGDEITGVNGRSIK 79

Query: 258 GMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 297
           G +  E  K+I   K ++++   +    P   +     PG
Sbjct: 80  GKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPG 119

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           + V+ +   L +  +    +L  GD++L IN   T G++  +A + I +   +L L IRR
Sbjct: 40  LAVRGL---LKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96

Query: 282 EVPRPTA 288
            +  P++
Sbjct: 97  PLSGPSS 103

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F +  G+     + V ++    D   +A + ++  GD L+ IN  P  G   +EA  LI 
Sbjct: 25  FTLKGGLEHCEPLTVSKIE---DGGKAALSQKMRTGDELVNINGTPLYGSR-QEALILIK 80

Query: 270 SSKEKLSLTIRREVPRPTA 288
            S   L L +RR    P++
Sbjct: 81  GSFRILKLIVRRRNSGPSS 99

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 213 DFGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
           D+G  +     + V  VT     +A      L  GD +L++NN P + +S + A  ++  
Sbjct: 22  DYGFHISESLPLTVVAVTA--GGSAHGK---LFPGDQILQMNNEPAEDLSWERAVDILRE 76

Query: 271 SKEKLSLTIRREVPRP 286
           +++ LS+T+ R     
Sbjct: 77  AEDSLSITVVRCTSSG 92

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
             + ++             +L  GD++ K N    +G+  +    L   +  K+S+ + R
Sbjct: 138 CTIADLIQ---GQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 194

Query: 282 EVPRPTAYQES 292
             P+PT   E+
Sbjct: 195 --PKPTLRTEA 203

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+ ++   +   A+A   +L   D +L++N      +    A + +  +   + L +RR
Sbjct: 36  IFITKI---IPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRR 92

Query: 282 EVPRPTAYQ 290
             P P    
Sbjct: 93  RQPPPEETS 101

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 191 DVFHVIDTLHNGVVGSWQVFRIDFGIILGNK-----IFVKEVTHRLDNNASAGTHQLAEG 245
           ++  V   LH    G         GI L  +     +F+ ++   L+   +A   +L+  
Sbjct: 3   EILQV--ALHKRDSGE------QLGIKLVRRTDEPGVFILDL---LEGGLAAQDGRLSSN 51

Query: 246 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 284
           D +L IN H     + + A ++I +S E+++LTI R   
Sbjct: 52  DRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGK 90

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 214 FGI-ILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
            G+ +  N+    + ++   +         +L  GD++ K N    +G+  +    L   
Sbjct: 16  LGLSLSPNEIGCTIADL---IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG 72

Query: 271 SKEKLSLTIRREVPRPTAYQESTTLP 296
           +  K+S+ + R  P+P +    + +P
Sbjct: 73  ANGKVSMEVTR--PKPGSGGSGSLVP 96

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 214 FGI-ILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
            G+ +  N+    + ++             +L  GD++ K N    +G+  + +  L   
Sbjct: 22  LGLSLSPNEIGCTIADLIQ---GQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG 78

Query: 271 SKEKLSLTIRREVPRPTAY 289
           +  K+S+ + R  P+P A 
Sbjct: 79  ANGKVSMEVTR--PKPAAA 95

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+V ++   ++  A+    +L  GD LL +N+   + ++ +EA   + ++ + + L + +
Sbjct: 35  IYVTKI---IEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91

Query: 282 EVPRPTAYQES 292
                 +    
Sbjct: 92  PTSMYISRHHH 102

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 185 MSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK-----IFVKEVTHRLDNNASAG 238
           + F+  D + V   L  G  G        FG  + G +     ++V  +    ++  +  
Sbjct: 18  LYFQSMDFYTV--ELERGAKG--------FGFSLRGGREYNMDLYVLRLA---EDGPAER 64

Query: 239 THQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 285
           + ++  GD +L+IN   T  M    A +LI +   ++ L ++R    
Sbjct: 65  SGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETS 111

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 46.7 bits (111), Expect = 7e-07
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I +  +      +    +  L  GD +L I+    +  S+ EA KL+ S  EK+ L I  
Sbjct: 44  ITIDRIKP---ASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100

Query: 282 EVPRPTAYQESTTLP 296
                   + S+   
Sbjct: 101 VPQSQRPLRPSSGPS 115

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I + EV    +  A+    +L  GD +L++N       +  EA  ++  + +++ LT+ R
Sbjct: 32  IIIHEV---YEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYR 88

Query: 282 EVP 284
           +  
Sbjct: 89  DEA 91

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 186 SFRKGDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK-----IFVKEVTHRLDNNASAGT 239
           S +  D F V   +  G  G        FG  I G +     ++V  +    ++  +   
Sbjct: 6   SGQDFDYFTV--DMEKGAKG--------FGFSIRGGREYKMDLYVLRLA---EDGPAIRN 52

Query: 240 HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY 289
            ++  GD +++IN   T  M+   A +LI S   ++ L ++R      + 
Sbjct: 53  GRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPSS 102

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFV ++   +D+  +A    L   D ++++N       +  +A +   ++KE + + + R
Sbjct: 43  IFVSKI---VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99

Query: 282 EVPRP 286
               P
Sbjct: 100 RTSGP 104

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+VK V   +   A+    ++ +GD +L +N    +G + K+A + + ++ + + L + +
Sbjct: 35  IYVKAV---IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91

Query: 282 EVPRPT 287
               PT
Sbjct: 92  GQS-PT 96

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 190 GDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK---IFVKEVTHRLDNNASAGTHQLAEG 245
           G V  V   L N   G         G  I+G K   + V+ +   +    +    +L  G
Sbjct: 14  GHVEEV--ELINDGSG--------LGFGIVGGKTSGVVVRTI---VPGGLADRDGRLQTG 60

Query: 246 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 294
           D +LKI      GM+ ++  +++ +    + + + R+     +     +
Sbjct: 61  DHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPS 109

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+V  +    +N A+A   +L EGD +L +N      +  ++A  L  ++   +SL ++ 
Sbjct: 49  IYVSRI---KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 105

Query: 282 EVPRPTA 288
            +     
Sbjct: 106 RLQVQNG 112

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+  V+        A    +  GD LL++N     G    EA + +  +   + + + R
Sbjct: 48  IFISRVSE----EGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103

Query: 282 EVPRPTA 288
           E    + 
Sbjct: 104 ESGPSSG 110

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+V  +    +N A+A   +L EGD +L +N      +  ++A  L  ++   +SL ++ 
Sbjct: 39  IYVSRI---KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95

Query: 282 EVP 284
            + 
Sbjct: 96  RLE 98

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+K V   L+++ +     L  GD +++++       S ++A + I  +   +   ++ 
Sbjct: 41  IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97

Query: 282 EVPRP 286
            +   
Sbjct: 98  IISTR 102

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFV  +    +  A+     L  GD +L IN           A  L+ ++   ++L + R
Sbjct: 40  IFVSRI---AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96

Query: 282 EVPRPTAY 289
           E     + 
Sbjct: 97  EAGSGPSS 104

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+VK V   +   A+    ++ +GD +L +N    +G + K+A + + ++ + + L + +
Sbjct: 44  IYVKAV---IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 100

Query: 282 EVPRP 286
                
Sbjct: 101 GQSPT 105

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 17/112 (15%)

Query: 189 KGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNK----IFVKEVTHRLDNNASAGTHQLAE 244
           KG   H    L     G        F ++ G++    + +K +   + +  +A   ++  
Sbjct: 16  KGKFIHT--KLRKSSRG------FGFTVVGGDEPDEFLQIKSL---VLDGPAALDGKMET 64

Query: 245 GDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 294
           GDV++ +N+    G +  +  K+  S      + L + R  P P    +  T
Sbjct: 65  GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNT 116

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+  +        +A T +L  GD ++ I    T+GM+  +A  L+ ++   + + +  
Sbjct: 55  IFIAMM---HPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVA 111

Query: 282 EVPRPTA 288
                  
Sbjct: 112 GGDVSET 118

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
            ++ ++   L   ++  T +L EG  +L+ N  P    + +E + +I     +  + +R 
Sbjct: 51  AYIAKI---LPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL 107

Query: 282 EVPRPT 287
           ++    
Sbjct: 108 DLNMSG 113

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           ++++ +   L  + +A   +L+ GD +L++N     G+    A  LI    +K+   + +
Sbjct: 38  LYIQTL---LPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAK 94

Query: 282 EVPRPTAYQESTT 294
                     S  
Sbjct: 95  SDVETAKKIHSGP 107

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 12/63 (19%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+VK +   +  +A+A   ++   D +L++++    GM+  +  +++ ++   + L + R
Sbjct: 46  IYVKSL---IPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102

Query: 282 EVP 284
            +P
Sbjct: 103 RLP 105

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 19/114 (16%)

Query: 108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG----- 154
           P   P      ++    +Y++    EM+   GDV  V++               G     
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPAS 61

Query: 155 ------SWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
                 S           + +       Y   E  E+S  +G+   VI  L +G
Sbjct: 62  FLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG 115

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFVK V    +  A+    ++   D+L++++     G++   A  ++ ++K ++   I R
Sbjct: 37  IFVKTV---TEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 93

Query: 282 EVPRPTAYQEST 293
           E P   +     
Sbjct: 94  ERPGEQSEVAQL 105

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 213 DFGI-ILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           DFG  I  +   IFV  V    +  + A   QL   D ++ INN        KE  + + 
Sbjct: 18  DFGFTIKWDIPGIFVASV----EAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMA 73

Query: 270 SSKE--KLSLTIRR 281
            ++E   L + +RR
Sbjct: 74  KAQETGHLVMDVRR 87

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 189 KGDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK------IFVKEVTHRLDNNASAGTHQ 241
            G++  +   L     G         G+ + GNK      IFV  +        +A   +
Sbjct: 23  PGELHII--ELEKDKNG--------LGLSLAGNKDRSRMSIFVVGI---NPEGPAAADGR 69

Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 286
           +  GD LL+INN    G S + A  +I ++  K+ L   R     
Sbjct: 70  MRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAV 114

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFVK V    +  A+    ++   D +++++     G++   A  ++ ++K  +   I R
Sbjct: 42  IFVKTV---TEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98

Query: 282 EVPRPTAY 289
           E P   + 
Sbjct: 99  EKPSGPSS 106

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 198 TLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD 257
           TL            I  G      +++ +V    DN  +A    +A GD +  +N     
Sbjct: 29  TLQKDAQNLIG-ISIGGGAQYCPCLYIVQV---FDNTPAALDGTVAAGDEITGVNGRSIK 84

Query: 258 GMSVKEARKLIDSSKEKLSLTIRREVP 284
           G +  E  K+I   K ++++   +   
Sbjct: 85  GKTKVEVAKMIQEVKGEVTIHYNKLQY 111

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 273
           F I   + + V+ V    D+   A    L + D +L++N  P +     E    I S   
Sbjct: 18  FTICCDSPVRVQAV----DSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS 73

Query: 274 KLSLTIRREVPRP 286
           ++ L + R VP+ 
Sbjct: 74  EIILLVWRMVPQV 86

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 198 TLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD 257
            +     G    F +  G   G  IFV +V       +SA    L  GD + ++N    +
Sbjct: 15  RVEKSPAGRLG-FSVRGGSEHGLGIFVSKVEE----GSSAERAGLCVGDKITEVNGLSLE 69

Query: 258 GMSVKEARKLIDSSKEKLSLTIRREVPRPTA 288
             ++  A K++ SS   L + +RR    P++
Sbjct: 70  STTMGSAVKVLTSSSR-LHMMVRRMGSGPSS 99

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I + EV    +  A+A   +L  GD +L++N       S +EA   +  + +K+ L + R
Sbjct: 45  IVIHEV---YEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYR 101

Query: 282 EVPRPTAYQESTT 294
           +       +   +
Sbjct: 102 DEAHYRDEESGPS 114

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             I       + I +  +T       +  T  +  GD +L IN+    G  + EA  L+ 
Sbjct: 20  ITISGTEEPFDPIIISSLTK---GGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 76

Query: 270 SSKEKLSLTIRREVPRPTA 288
            + E ++L I+++     A
Sbjct: 77  MAGETVTLKIKKQTDAQPA 95

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F +  G      + V  V       A     +L EGD ++ IN       +  +    I 
Sbjct: 31  FNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 88

Query: 270 SSKEKLSLTIRREVPRPTAYQESTTLPG 297
           +S E+ S  +   V RP A  +     G
Sbjct: 89  ASCERHSGELMLLV-RPNAVYDVVEESG 115

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIR 280
           + +  +       AS  +  +  GD +L++      G++  EA  +I +  +  +++ IR
Sbjct: 59  LTINRI---FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115

Query: 281 REVPRPTAYQEST 293
           R+  +      + 
Sbjct: 116 RKSLQSKETTAAG 128

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           + +  V        +     +  GD LL ++     G +  EA  ++    ++ +L I  
Sbjct: 34  VVITSV---RPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEY 90

Query: 282 EVPRPT 287
           +V    
Sbjct: 91  DVSETA 96

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 203 VVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVK 262
           +     V     G+     IF+  +        +  T  LA  D +L++N     G S+ 
Sbjct: 48  IRDGSSVRVTPHGLEKVPGIFISRLVP---GGLAQSTGLLAVNDEVLEVNGIEVSGKSLD 104

Query: 263 EARKLIDSSKEKLSLTIRREVPR 285
           +   ++ ++   L +T+R    R
Sbjct: 105 QVTDMMIANSRNLIITVRPANQR 127

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+ +V       A+    +L  G  LL++N     G++  EA +L+ S  + L++ +  
Sbjct: 46  IFISKV---SPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD 102

Query: 282 EVPRP 286
                
Sbjct: 103 GFESG 107

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+K+V   L+++ +  T+ L  GD +L+++       S  EA + I ++   +   ++ 
Sbjct: 52  IFIKQV---LEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQS 108

Query: 282 EVPRP 286
               P
Sbjct: 109 LSSTP 113

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+V ++   +D  A+    +L  GD LL +NN+  + ++ +EA  ++ ++ E + L + +
Sbjct: 56  IYVTKI---IDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112

Query: 282 EVP 284
              
Sbjct: 113 PTT 115

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFV  V        ++    L  GD +++ N +    +   +A  L+ + +  + L I R
Sbjct: 37  IFVTRV---QPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91

Query: 282 EVP 284
           EV 
Sbjct: 92  EVS 94

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 218 LGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 277
           L     +  + H      +  +  L+ GD L  IN     G+ +   +  +  +K + S+
Sbjct: 35  LLPTAVIANLLH---GGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSV 91

Query: 278 TIRREVPRP 286
           T+      P
Sbjct: 92  TLSIVHCPP 100

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 46.1 bits (108), Expect = 7e-06
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
             G  + N I        L     A    +  G  +++IN       + ++  + + +S 
Sbjct: 309 QLGFSVQNGIICS-----LMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 363

Query: 273 EKLSLTI-RREVPRPTAYQESTTL 295
            ++ +      + R    QE+   
Sbjct: 364 GEIHMKTMPAAMFRLLTGQETPLY 387

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLT 278
            + +  + +      +A + +L+ GD ++ IN     G+ +   + +I   K   ++ L 
Sbjct: 233 TVILANMMN---GGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 289

Query: 279 IRREVPRPT 287
           I    P  T
Sbjct: 290 IVSCPPVTT 298

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFVK +     ++A     ++  GD ++ ++     G + ++A +++  + + + LT+ R
Sbjct: 35  IFVKSI---TKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 91

Query: 282 EVP 284
              
Sbjct: 92  RGE 94

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I++ ++   ++  A+    +L  GD LL +NN     +  +EA   + ++ + + L + +
Sbjct: 35  IYITKI---IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
            + + +  +       A+  +  L EGD +L+IN     G  V E   L+      L+  
Sbjct: 47  MDSVIISRIVK---GGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103

Query: 279 IRREVPRPTA 288
           +       + 
Sbjct: 104 LIPSSGPSSG 113

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I + +V   L    + G  QL E D +  +N    D +    A + +  S +   +TIRR
Sbjct: 41  IVISDV---LKGGPAEG--QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95

Query: 282 EVPRP 286
           +    
Sbjct: 96  KKGGG 100

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+VK V       A++   +L  GD ++ +N    +G++ +EA  ++  +K  ++L +  
Sbjct: 55  IYVKTV---FAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 111

Query: 282 EVP 284
              
Sbjct: 112 SDE 114

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             I  G   G  I++  V       + A    L  GD +L++N      +   EA +L+ 
Sbjct: 36  LTIRGGAEYGLGIYITGVDP----GSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLK 91

Query: 270 SSKEKLSLTIRREVPRPTAYQESTTLP 296
           SS+  L LT++     P A        
Sbjct: 92  SSRH-LILTVKDVGRLPHARTTVDETK 117

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 17/115 (14%)

Query: 186 SFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNK----IFVKEVTHRLDNNASAGTHQ 241
           S  KG       TL    +G        F II G++    + VK V   + +  +A   +
Sbjct: 14  SQLKGTFLST--TLKKSNMG------FGFTIIGGDEPDEFLQVKSV---IPDGPAAQDGK 62

Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 294
           +  GDV++ IN     G +  +  KL  S    + ++L + R  P P   ++   
Sbjct: 63  METGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I V  V     N  ++    + +G+ +L IN     G +  +A  ++  ++E     I  
Sbjct: 44  ITVHRV---FPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT 100

Query: 282 EVPRPTAYQESTT 294
               P A  +  +
Sbjct: 101 RKLTPEAMPDLNS 113

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFV  V        ++    L  GD +++ N +    +   +A  L+ + +  + L I R
Sbjct: 45  IFVTRV---QPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99

Query: 282 EVP 284
           EV 
Sbjct: 100 EVS 102

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FRI  G   G  I +  V   +   ++    +L  GD L+ ++  P  G + +    L+ 
Sbjct: 24  FRILGGDEPGQPILIGAV---IAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMH 80

Query: 270 SSKE--KLSLTIRREVPRP 286
            +    +++LT+RR+V   
Sbjct: 81  HAARNGQVNLTVRRKVLSG 99

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 214 FGI-ILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
            G  I+G +    IFV  +   L    +  + +L  GD +L +N       + ++A   +
Sbjct: 28  LGFNIVGGEDGEGIFVSFI---LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAAL 84

Query: 269 DSSKEKLSLTIRREVPRPTAYQESTTLPG 297
             + + +++  +      + ++ S    G
Sbjct: 85  KRAGQSVTIVAQYRPEEYSRFESSGPSSG 113

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F I  G    + I++  V   +    +     L  GD LL +N    +G   ++A +L+ 
Sbjct: 20  FNIMGGKEQNSPIYISRV---IPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK 76

Query: 270 SSKEKLSLTIRR 281
           +++  + L +R 
Sbjct: 77  AAQGSVKLVVRS 88

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+K V   L+++ +     L  GD +++++       S ++A + I  +   +   ++ 
Sbjct: 61  IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117

Query: 282 EVP 284
            + 
Sbjct: 118 IIS 120

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           ++VK +              L   D LL++N+  T          LI  S  KL L I R
Sbjct: 34  VYVKNIRP----AGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 214 FGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
             I+ G K  I+V +VT      + A    L  GD LL+ N       + ++AR +I   
Sbjct: 34  ISIVSGEKGGIYVSKVTV----GSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQ 89

Query: 272 KEKLSLTIRREVPRPTAYQESTT 294
            + +++  +     P  +Q S+ 
Sbjct: 90  CDTITILAQY---NPHVHQLSSH 109

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 214 FGIIL---GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI-D 269
            G+ L    N IFV+ V      N+ A    L  GD +L+IN     G S  +A K++  
Sbjct: 18  IGLRLKSIDNGIFVQLVQA----NSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 73

Query: 270 SSKEKLSLTIRR 281
           +  EK+++TIR 
Sbjct: 74  AFGEKITMTIRD 85

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 3/73 (4%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
           G  I + E+        +     L  GD +L +N         KEA  ++   + ++   
Sbjct: 34  GVPILISEI---HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 90

Query: 279 IRREVPRPTAYQE 291
           +         +  
Sbjct: 91  VVYVALEHHHHHH 103

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I + ++       A+  T  L  GD +L +N       +  EA + +  + +++ L ++ 
Sbjct: 32  ILISKI---FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY 88

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
                V  + H            L  GD +L+IN       SV + +K +  +K  +SL 
Sbjct: 35  KQSCTVARILH---GGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLK 91

Query: 279 IRR 281
           +  
Sbjct: 92  VIP 94

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 13/87 (14%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 214 FGI-ILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
            G  I+G +    IF+  +   L    +  + +L +GD +L +N       S ++A   +
Sbjct: 27  LGFNIVGGEDGEGIFISFI---LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 83

Query: 269 DSSKEKLSLTIRREVPRPTAYQESTTL 295
            ++ + +++  + +    + ++ ++ +
Sbjct: 84  KNAGQTVTIIAQYKPEEYSRFEANSRV 110

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+  V+        A    +  GD LL++N     G    EA + +  +   + + + R
Sbjct: 36  IFISRVSE----EGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 91

Query: 282 EVPRP 286
           E    
Sbjct: 92  ERETS 96

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
            N   V  + H            L  GD + +IN       +V++ +K++   +  ++  
Sbjct: 24  LNHCIVARIMH---GGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK 80

Query: 279 IRREVPRPTAYQE 291
           I   VP   +Y+E
Sbjct: 81  I---VP---SYRE 87

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHP-TDGMSVKEARKLIDSSKEKLSLTIR 280
           IFV+E+    + + +    +L E D +L IN       ++ ++A  ++  +K+ + L I 
Sbjct: 51  IFVQEI---QEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIA 107

Query: 281 REVPRPTAYQ 290
           R    P  Y+
Sbjct: 108 RG-SLPQYYK 116

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           + V  V       A+     + +GD ++ IN       ++ EA   +  +  +    I  
Sbjct: 45  VVVSAVYE---GGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDL 101

Query: 282 EVPR--PTAYQESTTL 295
            V    P  Y +  T 
Sbjct: 102 VVAVCPPKEYDDELTF 117

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 214 FGI-ILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
            G  I+G +    IF+  +   L    +  + +L +GD +L +N       S ++A   +
Sbjct: 24  LGFNIVGGEXGEGIFISFI---LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 80

Query: 269 DSSKEKLSLTIRREVPRPTAYQES 292
            ++ + +++  + + P   +  E+
Sbjct: 81  KNAGQTVTIIAQYK-PEEYSRFEA 103

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             +  G+  G  +F+  +         A +  L  GD +++IN +     + +E   LI 
Sbjct: 100 LSVRGGLEFGCGLFISHLIK----GGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIR 155

Query: 270 SSKEKLSLTIRREVPRPTAYQESTTL 295
           + K  +S+ +R     P        L
Sbjct: 156 TEKT-VSIKVRHIGLIPVKSSPDEPL 180

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F I  G   G  I+V  V    +  + A    L  GD +L++N+     ++  EA K + 
Sbjct: 25  FSIRGGSEHGVGIYVSLV----EPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK 80

Query: 270 SSKEKLSLTIRR--EVPRPT 287
            SK+ L L++     +  P+
Sbjct: 81  GSKK-LVLSVYSAGRISGPS 99

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
             +++V  V         A    L  GD +L+INN   D ++    +  +      L + 
Sbjct: 43  IRRLYVNSVKE----TGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVR 98

Query: 279 IRREVPRPT 287
              E+    
Sbjct: 99  TYPELEEGV 107

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
             +  +   +D + +    +L  GD +L +N      M   +  KLI  +   ++L I  
Sbjct: 45  HKIGRI---IDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIP 101

Query: 282 EVPRPTAYQEST 293
           +    +    S+
Sbjct: 102 QEELNSPSGPSS 113

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTI 279
            F+ +V      + +     L  GD +L+ N     G + +E   +I  SK   ++ L +
Sbjct: 67  AFITKV---KKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVV 123

Query: 280 RREVPRP 286
            R  P  
Sbjct: 124 SRSGPSS 130

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I + +V   L    + G   L E D ++ +N  P + +    A + +  S +  ++ ++R
Sbjct: 48  IVISDV---LPGGPADG--LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 102

Query: 282 EVPRPTA 288
                 A
Sbjct: 103 PRKVQVA 109

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F +  G      + V  V       A     +L EGD ++ IN       +  +    I 
Sbjct: 33  FNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 90

Query: 270 SSKEKLSLTIRREVPRP 286
           +S E+ S  +   V RP
Sbjct: 91  ASCERHSGELMLLV-RP 106

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+VK V   +   A+    +LA GD LL ++     G+S + A +L+  +   ++L + +
Sbjct: 40  IYVKSV---VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 96

Query: 282 EVP 284
           +  
Sbjct: 97  QGA 99

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+K +   + ++ +    +L  GD +L +N       + +    LI  +  K+ L I+ 
Sbjct: 39  IFIKGI---VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
            +++ V    D    A    L  GD L+++N      +  ++   +I      L + +  
Sbjct: 47  QYLESV----DEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 102

Query: 282 EVPRP 286
               P
Sbjct: 103 VTRHP 107

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279
           I V  +       A+  +  +  GD L ++N  P +    +E  +++  S+  ++  I
Sbjct: 30  IIVARIMR---GGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK--LSLTI 279
           I+VK +   L   A+    +L  GD L+++N     G S +E   L+ S+K +  +SL +
Sbjct: 41  IYVKNI---LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 97

Query: 280 RREVPRP 286
            R+    
Sbjct: 98  FRQEEAF 104

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHP-TDGMSVKEARKLIDSSKEKLSLTIR 280
           IFVK+V      + +    +L E D +L IN+ P    +S ++A  L+  +   L L + 
Sbjct: 56  IFVKDV---QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVA 112

Query: 281 REVPRPT 287
           RE     
Sbjct: 113 REPVHTK 119

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
            + IFVK+V         A    L  GD ++K+N     G +  +   LI +S   L L+
Sbjct: 60  MDTIFVKQV----KEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115

Query: 279 IRREVPRPTA 288
           +  +   P++
Sbjct: 116 VMPKDSGPSS 125

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           + + ++   +   A+  +  +  GD++L +N+ P   +S   A +++     +  + +  
Sbjct: 35  VIISDL---IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLIL 91

Query: 282 EVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTR 322
             P        TT  G        ++           PPT+
Sbjct: 92  RGPEGFTTHLETTFTGDGTPKTIRVTQPLG-------PPTK 125

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 8/139 (5%)

Query: 71  YHTNLARQRSRVLFPVGSTFVGSVLGARGALDLANYDPSTKPHSK-STGSHLTHFNYDQP 129
           Y   ++R+ +  L       +G+ L  R +     Y  + +   + +   H      +  
Sbjct: 15  YFPGMSREEAHKLLGEPQVSIGTFLM-RDSSRPGEYSLTVREADEGNAVCHYLIERGEPK 73

Query: 130 EKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTH------FNYDQPEKG 183
           E G  +            +   +           + ++A  K         F +    + 
Sbjct: 74  EDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERET 133

Query: 184 EMSFRKGDVFHVIDTLHNG 202
           ++ F +G+   ++   +  
Sbjct: 134 DLPFEQGERLEILSKTNQD 152

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 214 FGIILGNK-IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
             +I     + +  +   ++  A+A    L  GDVL+ + +    G +++E  KL+ +  
Sbjct: 42  LVVIQNGPYLQISHL---INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT 98

Query: 273 --EKLSLTIRR-EVPRPTAYQEST 293
               L +   R  +  P  +Q+S 
Sbjct: 99  IGTVLQIKAYRGFLEIPQEWQDSG 122

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
            F+K +              +  GD +  IN     G    +  K +   K++   T++ 
Sbjct: 30  AFIKRIKD---GGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKL 86

Query: 282 EVPR 285
             P+
Sbjct: 87  IEPK 90

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFVK VT   +  A+    ++   D+L++++     G++   A  ++ ++K ++   I R
Sbjct: 113 IFVKTVT---EGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169

Query: 282 E 282
           E
Sbjct: 170 E 170

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 273
           F I   + + V+ V    D+   A    L + D +L++N  P +     E    I S   
Sbjct: 30  FTICCDSPVRVQAV----DSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS 85

Query: 274 KLSLTIRREVPRPTA 288
           ++ L + R     + 
Sbjct: 86  EIILLVWRVSGPSSG 100

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 214 FGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
             +  GN   IFV  V      ++ A    L EGD +L++NN     +  +EA   +   
Sbjct: 43  LRLAGGNDVGIFVAGVLE----DSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 98

Query: 272 KEKLSLTIRREVPRPTAYQE 291
            +   +TI  +  +   Y+ 
Sbjct: 99  PKGEEVTILAQ-KKKDVYRR 117

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
            +++ V    D    A    L  GD L+++N      +  ++   +I      L + +  
Sbjct: 67  QYLESV----DEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 122

Query: 282 EVPRP 286
               P
Sbjct: 123 VTRHP 127

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+V  V         +   ++  GD+LL ++      +S  EA  L+  +   + L    
Sbjct: 55  IYVISV---EPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALE 111

Query: 282 EVP 284
              
Sbjct: 112 VKE 114

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 214 FGIILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F ++ G++    + +K +   + +  +A   ++  GDV++ +N+    G +  +  K+  
Sbjct: 15  FTVVGGDEPDEFLQIKSL---VLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 71

Query: 270 SSK--EKLSLTIRR 281
           S      + L + R
Sbjct: 72  SIPIGASVDLELCR 85

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FRI  G   G  I++  +   +   A+    +L  GD L+ ++  P  G S +   +L+ 
Sbjct: 17  FRILGGNEPGEPIYIGHI---VPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ 73

Query: 270 SSKEK--LSLTIRRE 282
            + ++  ++LT+R+ 
Sbjct: 74  QAAKQGHVNLTVRQT 88

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+ +V      ++ A    L EGD +L +N+     +   +A +++ +++E +S+ +R 
Sbjct: 43  IFISKV----IPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTARE-ISMRVRF 97

Query: 282 EVPRPTA 288
               P++
Sbjct: 98  -FSGPSS 103

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             I  G   G  I + E+        +     L  GD +L +N         KEA  ++ 
Sbjct: 43  ISITGGKEHGVPILISEI---HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99

Query: 270 SSKEKLSLTIR 280
             + ++   + 
Sbjct: 100 QQRGEIEFEVV 110

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           +FV ++   +    +    +L +GD +L +N       + +    L+  S   ++L + R
Sbjct: 31  VFVSDI---VKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87

Query: 282 E 282
            
Sbjct: 88  I 88

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 15  RLSAIRDMMDRGRHGLLDI-TPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK 70
            +  I ++    +  +LD  T N   +L+     PIV++++  +   ++ L     K
Sbjct: 218 EIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGK 274

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK--LSLTI 279
           I+VK +   L   A+    +L  GD L+++N     G S +E   L+ S+K +  +SL +
Sbjct: 60  IYVKNI---LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116

Query: 280 RRE 282
            R+
Sbjct: 117 FRQ 119

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
            +++ V    +  + A    L  GD L+++N    +  + ++    I ++   + L +  
Sbjct: 29  QYIRLV----EPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD 84

Query: 282 E 282
            
Sbjct: 85  P 85

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
             +  +     ++ +     L  GD ++ IN  PT+  + +EA +L+  S     +T+  
Sbjct: 47  PLISYI---EADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103

Query: 282 EVPRPTAYQEST 293
           E     +   S+
Sbjct: 104 EFDVAESVIPSS 115

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+VK V      +A+     +   D ++ ++     G +  +  +++ ++ + + LT+ R
Sbjct: 48  IYVKSVIP---GSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104

Query: 282 EVPRPTAYQESTTLP 296
                +         
Sbjct: 105 RKTSSSTSPLEPPSD 119

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
            +++ V    D  + A    L   D L+++N    +G+   E    I + +++  L +  
Sbjct: 30  QYIRSV----DPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 85

Query: 282 EVPR 285
              R
Sbjct: 86  PSTR 89

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID-SSKEKLSLTIR 280
           I+V  V         A    L  GD ++++N      ++  +ARK +   S+E + L + 
Sbjct: 66  IYVTRV----SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT 121

Query: 281 REVPRPTAYQESTT 294
           R+  +    Q   +
Sbjct: 122 RQSLQKAVQQSMLS 135

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
              + VKEV     + +    + +  GD +L+IN  P   + V+E    I  + + L L 
Sbjct: 43  ATTVQVKEV--NRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLL 100

Query: 279 IRREVPRPTAYQES 292
           I  + P P    +S
Sbjct: 101 IEHD-PVPQRLDQS 113

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
           G  +++ EV   +         +L  GD L+ IN     G+S +EA+ +I  +K +    
Sbjct: 40  GPLVYIHEV---IPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESP 96

Query: 279 IRREVPRP 286
                 R 
Sbjct: 97  WEIAFIRS 104

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
           G ++ +  + H       A    L  GD++ ++N  P  G   +  ++L+ ++   + L 
Sbjct: 28  GGELVIARILH---GGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILK 83

Query: 279 IRREVPRPTA 288
           I   +  P++
Sbjct: 84  I---LSGPSS 90

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 108 PSTKPHSKSTGSHLTHF----NYDQPEKGEMSFRKGDVFHVIDTLHNG 151
             T       G+ +T F    +Y+   + ++SF KG+ F ++++    
Sbjct: 2   SMTGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGD 49

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-----KEKLS 276
             +  +       ++    QL  G V+L++N     G   +EA ++I  +     ++ + 
Sbjct: 34  PRIVTI---QRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYID 90

Query: 277 LTIRREVPRPTA 288
             +      P++
Sbjct: 91  FLVTEFNSGPSS 102

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 214 FGIIL-GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           +G  L   K     +   ++  + A    L +GD +L+IN    D     +  +L+  S 
Sbjct: 15  YGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 74

Query: 273 EKLSLTIRRE 282
             ++L +   
Sbjct: 75  NSVTLLVLDG 84

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI--DSS 271
           FG  + +    ++V   LD+    G   L +GD++ +I +     ++  +  +++     
Sbjct: 25  FGFAIADSPTGQKVKMILDSQWCQG---LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPV 81

Query: 272 KEKLSLTIRREVPRPTAYQESTTLPGKEN 300
              + L I R  P P+  + +    G   
Sbjct: 82  GADVPLLILRGGP-PSPTKTAKMGSGSGQ 109

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282
           L  GD++  IN     G+   +  +L+  S  K+SL     
Sbjct: 52  LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTAL 92

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 213 DFGIIL-GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
           ++G  L   K     +   ++  + A    L +GD +L+IN    D     +  +L+  S
Sbjct: 26  NYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKS 85

Query: 272 KEKLSLTIRRE 282
              ++L +   
Sbjct: 86  GNSVTLLVLDG 96

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 8/39 (20%)

Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
           F Y      E+SFR+GDV  + +          HNG+ G
Sbjct: 17  FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRG 55

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 8/39 (20%)

Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
           F Y      E+SFR+GDV  + +          HNG+ G
Sbjct: 17  FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRG 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.85
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.78
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.77
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.72
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.68
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.62
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.53
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	99.42
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.33
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	99.32
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.3
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.28
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.28
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	99.25
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.15
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.13
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.13
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.11
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.11
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.1
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.1
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.09
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.08
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.08
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.07
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.06
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.05
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.05
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.05
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.04
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.04
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.04
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.03
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.03
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.03
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.03
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.03
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.03
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.03
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.02
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.01
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.0
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.0
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.0
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.0
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.0
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.99
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.99
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.99
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.99
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.99
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.99
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.98
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.98
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.97
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.97
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.97
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.97
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.96
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.96
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.95
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.95
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.95
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.95
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.95
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.95
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.94
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.94
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.94
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.94
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.93
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.93
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.93
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.93
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.92
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.92
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.92
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.92
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.92
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.92
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.91
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.91
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.91
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.91
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.91
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.9
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.9
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.9
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.9
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.9
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.9
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.89
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.89
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.89
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.89
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.89
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.88
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.88
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.88
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.87
2ego_A	96	General receptor for phosphoinositides 1- associat	98.87
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.87
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.87
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.87
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.87
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.86
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.86
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.86
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.85
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.85
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.85
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.85
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.84
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.83
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.83
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	98.83
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.83
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.83
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.82
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.82
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.82
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.81
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.81
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.81
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.81
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.8
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.8
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.8
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.79
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.79
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.79
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.78
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.78
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.78
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.77
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	98.77
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.77
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.77
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.77
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.77
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.76
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.76
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.76
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.76
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.76
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.75
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.75
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.75
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.75
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.74
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.73
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.73
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.73
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.73
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.72
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.72
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.72
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.72
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.72
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.71
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.71
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.71
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.71
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.71
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.7
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.7
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.7
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.69
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.69
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.69
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.68
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.68
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.68
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.67
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.66
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.66
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.66
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.66
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.66
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.65
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.64
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.64
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.63
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.63
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.63
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.63
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.63
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.63
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.62
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.62
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.61
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.61
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.6
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.6
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.01
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.58
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.58
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.57
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.57
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.57
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.56
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.55
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.55
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.55
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.55
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.52
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.51
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.5
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.5
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.5
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.49
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.48
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.48
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.47
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.47
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.47
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.46
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.45
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.44
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.44
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.44
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.43
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.43
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.4
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.39
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.39
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.38
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.38
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.37
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.37
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.36
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.36
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.35
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.35
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.34
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.33
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.33
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.33
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.32
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.32
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.32
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.31
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.31
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.31
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.31
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.31
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.29
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.29
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.29
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.28
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.28
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.28
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.27
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.27
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.27
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.27
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.26
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.26
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.25
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.24
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.24
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.23
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.21
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.21
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.21
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.19
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.19
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.18
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.17
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.14
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.14
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.13
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.13
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.12
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.11
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.1
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.1
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.1
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.1
2ego_A	96	General receptor for phosphoinositides 1- associat	98.1
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.09
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.09
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.08
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.35
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.07
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.07
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.06
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.05
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.04
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.04
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.03
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.03
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.03
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.02
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.02
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.0
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	97.98
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	97.97
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	97.97
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	97.95
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	97.94
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	97.93
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	97.93
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	97.93
2d90_A	102	PDZ domain containing protein 1; structural genomi	97.92
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	97.91
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	97.9
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	97.9
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	97.9
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	97.89
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.86
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	97.85
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	97.84
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.83
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	97.82
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	97.81
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	97.8
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	97.78
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	97.77
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	97.73
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.73
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	97.71
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.71
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	97.7
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	97.69
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	97.66
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	97.64
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.62
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	97.62
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	97.57
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.56
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.53
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.53
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	97.47
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	97.46
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	97.44
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	97.43
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	97.41
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	97.41
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	97.4
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.39
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	97.39
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	97.38
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.37
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	97.32
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.3
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.28
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	97.26
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	97.25
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	97.23
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.23
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.16
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	97.15
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.12
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.12
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.05
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.04
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	96.99
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.99
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	96.93
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	96.81
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	96.74
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	96.72
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	96.71
3k50_A	403	Putative S41 protease; structural genomics, joint	96.51
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	96.39
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	96.39
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	96.35
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	96.34
4fgm_A	597	Aminopeptidase N family protein; structural genomi	96.06
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	96.04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	96.03
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	95.73
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.57
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	95.45
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	95.28
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	95.18
3k50_A	403	Putative S41 protease; structural genomics, joint	95.18
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	95.06
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	94.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	94.46
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	94.36
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	94.34
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	94.27
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.12
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	93.53
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	92.89
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	92.74
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	92.28
4fgm_A	597	Aminopeptidase N family protein; structural genomi	90.33
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	90.19
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	83.34
1k32_A	1045	Tricorn protease; protein degradation, substrate g	81.6
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	80.78

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.85  E-value=7.3e-21  Score=166.50  Aligned_cols=169  Identities=16%  Similarity=0.170  Sum_probs=126.8

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.||||.|.||.+.|++. +++++||++|.|||.|         +..++|++||+ +.||+.++.+.+  ..+.+++..
T Consensus        14 ~~~~lG~~i~~g~~~~~~~-~~~g~~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   83 (196)
T 3gsl_A           14 GNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAA---------AQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   83 (196)
T ss_dssp             BTTBSSEEEECCTTSCTTS-SCCCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             CCCCCCEEEEcccCCcccC-CCCCEEEEEECCCChH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3678999999999999985 7899999999998754         43334699999 589999998875  445567778


Q ss_pred             CCceEEEEEEeeccCCCC-------CCCCCCCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCc
Q psy9829         163 HNCISAQIKRTHFNYDQP-------EKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNA  235 (333)
Q Consensus       163 g~~v~L~v~R~~~~~~~p-------~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~  235 (333)
                      +..+.|.|.|.......+       ...++++      .+.        +..    .........++||.+|.++   ++
T Consensus        84 g~~v~l~v~r~~~~~~~~~~v~l~~~~~~lG~------~~~--------~~~----~~~~~~~~~gv~V~~V~~g---s~  142 (196)
T 3gsl_A           84 GSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGF------SIA--------GGV----GNQHIPGDNSIYVTKIIEG---GA  142 (196)
T ss_dssp             CSEEEEEEEEECCCCEEEEEEEEEEBTTBSCE------EEE--------ESB----TSCSBTTBCCEEEEEECTT---SH
T ss_pred             CCcEEEEEEecCCCccccEEEEEecCCCCceE------EEE--------ccC----CCcCCCCCCCEEEEEECCC---Ch
Confidence            899999998854221100       0001111      110        000    0000011247999999999   99


Q ss_pred             cccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         236 SAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       236 Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      |++.|+|++||+|++|||+++.+++++|+.++|+.+.+.+.|+|.|+...
T Consensus       143 A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  192 (196)
T 3gsl_A          143 AHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNA  192 (196)
T ss_dssp             HHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEEESCC
T ss_pred             HHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence            99999999999999999999999999999999999999999999997653

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.78  E-value=1.3e-18  Score=154.54  Aligned_cols=162  Identities=14%  Similarity=0.162  Sum_probs=121.6

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccC--cc--hhhhhhh
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNG--VV--GSWQVFR  160 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~g--v~--~a~~alr  160 (333)
                      .+.+|||+|+||.|.+.    ..++||++|.|||.|         +..++|++||+ +.||+.++.+  .+  ..+.+++
T Consensus        27 ~~~~lG~~i~~g~~~~~----~~g~~V~~V~~~spA---------~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   93 (206)
T 3r0h_A           27 EKKPMGVIVCGGKNNHV----TTGCVITHVYPEGQV---------AADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFH   93 (206)
T ss_dssp             TTSCCCEEEECCSSSSC----CSCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHH
T ss_pred             CCCCcCEEEecccCCCC----CCCeEEEEECCCChH---------HhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHH
Confidence            36799999999999843    268999999997754         44334799999 5899999999  64  4455667


Q ss_pred             hcCCc-eEEEEEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccc---cCeEEEEEEccCcccCcc
Q psy9829         161 IAHNC-ISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL---GNKIFVKEVTHRLDNNAS  236 (333)
Q Consensus       161 ~~g~~-v~L~v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l---~~~IfI~~I~~g~~ag~A  236 (333)
                      ..+.. ++|.|.|......            ..+.+.  +...       ....+|+.+   ..++||.+|.++   ++|
T Consensus        94 ~~~~~~v~l~v~R~~~~~~------------~~~~v~--l~~~-------~~~~lG~~~~~~~~gv~V~~V~~g---s~A  149 (206)
T 3r0h_A           94 TTYEKAVTLTVFRADPPEL------------EKFNVD--LMKK-------AGKELGLSLSPNEIGCTIADLIQG---QYP  149 (206)
T ss_dssp             SCCSSEEEEEEECCSSCCE------------EEEEEE--EECC-------TTCCCCEEEEECSSCEEEEEECTT---SCH
T ss_pred             hcCCCceEEEEEecccCCC------------cEEEEE--EecC-------CCCccCeEEEcCCceEEEEEECCC---ChH
Confidence            77777 9999987432110            001111  0000       001234433   247999999999   999


Q ss_pred             ccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         237 AGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       237 a~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      ++.|+|++||+|++|||+++.+++++++..+|+.+...+.|+|.|..+
T Consensus       150 ~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~  197 (206)
T 3r0h_A          150 EIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP  197 (206)
T ss_dssp             HHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEECC
T ss_pred             HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            999899999999999999999999999999999999999999999654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.77  E-value=3.3e-18  Score=180.01  Aligned_cols=168  Identities=16%  Similarity=0.177  Sum_probs=127.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||+|.||.|+|+.. ++.+|||++|.|||.|         +..++|++||+ +.||++++.+++  .++.+++.++
T Consensus        69 ~~glGf~i~gg~~~~~~~-~~~g~~V~~v~~gspA---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g  138 (721)
T 2xkx_A           69 NSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGAA---------AQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG  138 (721)
T ss_pred             CCCCCEEEeCCcCCcccC-CCCCeEEEEeCCCCHH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc
Confidence            469999999999999875 7899999999998754         44445799999 589999999985  4566777788


Q ss_pred             CceEEEEEEeeccCCCCC-------CCCCCCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCcc
Q psy9829         164 NCISAQIKRTHFNYDQPE-------KGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNAS  236 (333)
Q Consensus       164 ~~v~L~v~R~~~~~~~p~-------~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~A  236 (333)
                      ..|+|.|.|.......+.       ..++||      .+        .+..    +..++....++||++|.++   ++|
T Consensus       139 ~~v~l~v~R~~~~~~~~~~v~l~k~~~~lG~------~i--------~~~~----~~~~~~~~~gv~V~~V~~g---s~A  197 (721)
T 2xkx_A          139 SIVRLYVMRRKPPAEKVMEIKLIKGPKGLGF------SI--------AGGV----GNQHIPGDNSIYVTKIIEG---GAA  197 (721)
T ss_pred             cccceEEEecccccccceeeeeeeecCCCce------ee--------ccCC----CccccCCCCceEEEEeCCC---Cch
Confidence            899999988543211000       011111      00        0000    0000011247999999999   999


Q ss_pred             ccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         237 AGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       237 a~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      ++.|+|++||+|++|||+++.++++.+++.+|+.+.+.+.|+|.|+...
T Consensus       198 ~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~V~R~g~~  246 (721)
T 2xkx_A          198 HKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNA  246 (721)
T ss_pred             hhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            9999999999999999999999999999999999999999999998654

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.72  E-value=4.5e-17  Score=144.50  Aligned_cols=166  Identities=19%  Similarity=0.263  Sum_probs=122.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~-  162 (333)
                      ..||||.+.||.+++.+  .+.+++|++|.|||.|         +..++|++||+ +.+|+..+.+.  .....+++.. 
T Consensus        17 ~~glG~~i~~~~~~~~~--~~~~~~V~~v~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   85 (196)
T 1p1d_A           17 VTGFGIQLQGSVFATET--LSSPPLISYIEADSPA---------ERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   85 (196)
T ss_dssp             TTBCCCEEEECSSCSSS--CSCSEEEEECCTTSHH---------HHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCC
T ss_pred             CCccCEEEeCCcCCCCC--CCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            57999999999999875  4789999999998755         43223699999 58999999875  3445566665 


Q ss_pred             -CCceEEEEEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccc--------cCeEEEEEEccCccc
Q psy9829         163 -HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL--------GNKIFVKEVTHRLDN  233 (333)
Q Consensus       163 -g~~v~L~v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l--------~~~IfI~~I~~g~~a  233 (333)
                       +..++|.|.|.....+.|....        ..+.  +...       ....+|+.+        ..++||.+|.++   
T Consensus        86 ~g~~v~l~v~R~~~~~~~~~~~~--------~~v~--l~~~-------~~~~lG~~~~~~~~~~~~~gv~V~~V~~~---  145 (196)
T 1p1d_A           86 ITSKVTLEIEFDVAESVIPSSGT--------FHVK--LPKK-------HSVELGITISSPSSRKPGDPLVISDIKKG---  145 (196)
T ss_dssp             SSSEEEEEEEECSCSCCBCCSSC--------EEEE--ECCC-------SSCCCCCEEECSCSSSTTCCCEEEECCSS---
T ss_pred             CCCeEEEEEEecCCCCCCCCCCc--------EEEE--ecCC-------CCCCcCEEEECCCCCCCCCCEEEEEECCC---
Confidence             6789999988442221111110        1111  0000       001233333        357999999999   


Q ss_pred             CccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         234 NASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       234 g~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      ++|++.|+|++||+|++|||+.+.+++++++.++|+.+.+.+.|+|.|+.
T Consensus       146 s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (196)
T 1p1d_A          146 SVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE  195 (196)
T ss_dssp             SHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             CcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence            99999989999999999999999999999999999999889999999864

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.68  E-value=3.4e-16  Score=138.84  Aligned_cols=168  Identities=15%  Similarity=0.130  Sum_probs=121.2

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~  161 (333)
                      ..+.+|||.|.||.+.+      .+++|++|.+||.|         +...+|++||+ +.||+.++.+.  .....+++.
T Consensus        16 ~~~~~lG~~i~~~~~~~------~~~~V~~v~~~spA---------~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (200)
T 2qt5_A           16 KEGTTLGLTVSGGIDKD------GKPRVSNLRQGGIA---------ARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN   80 (200)
T ss_dssp             CTTCCCCEEEECCTTSS------SCSEEEEECTTSHH---------HHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred             CCCCCCCEEEecccCCC------CCeEEEEECCCChH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            34679999999998653      46899999998755         43225799999 68999999998  455566777


Q ss_pred             cCCceEEEEEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccc----------cCeEEEEEEccCc
Q psy9829         162 AHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL----------GNKIFVKEVTHRL  231 (333)
Q Consensus       162 ~g~~v~L~v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l----------~~~IfI~~I~~g~  231 (333)
                      .+..+.|.|.|..+..   ...+... .-..+.+.  +...        ...+|+.+          ..++||.++.++ 
T Consensus        81 ~g~~v~l~v~R~~~~~---~~~g~~~-~~~~~~v~--l~~~--------~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~-  145 (200)
T 2qt5_A           81 VGERVVLEVEYELPPV---SIQGSSV-MFRTVEVT--LHKE--------GNTFGFVIRGGAHDDRNKSRPVVITCVRPG-  145 (200)
T ss_dssp             CCSEEEEEEEEECCCC---CCCCSSE-EEEEEEEE--EECB--------TTBCSEEEEEECCSSTTTCEEEEEEEECTT-
T ss_pred             CCCeEEEEEeccCCCc---ccCCCcc-ceeEEEEE--EecC--------CCCeEEEEECCCCCCccCCCCEEEEEECCC-
Confidence            7889999998854321   0011000 00001111  0000        01122221          247999999999 


Q ss_pred             ccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         232 DNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       232 ~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                        ++|++.|+|++||+|++|||+.+.+++++|+.++|+...+.+.|+|.|+..
T Consensus       146 --s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~  196 (200)
T 2qt5_A          146 --GPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVS  196 (200)
T ss_dssp             --SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred             --ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence              999988889999999999999999999999999999988899999999753

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.62  E-value=4.7e-15  Score=155.98  Aligned_cols=185  Identities=14%  Similarity=0.193  Sum_probs=127.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||++.+|.+..+.+ ++.|+||++|.+||+|         +..++|++||+ +.||+..+.+++  .++.+++..+
T Consensus       164 ~~~lG~~i~~~~~~~~~~-~~~gv~V~~V~~gs~A---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  233 (721)
T 2xkx_A          164 PKGLGFSIAGGVGNQHIP-GDNSIYVTKIIEGGAA---------HKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  233 (721)
T ss_pred             cCCCceeeccCCCccccC-CCCceEEEEeCCCCch---------hhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCC
Confidence            457999999999988764 6789999999998754         44344799999 589999999985  4566777778


Q ss_pred             CceEEEEEEeeccC-----CCCCCC-C----CCC-CC-----Ccee--EEe-------eecCCCcccc-----c------
Q psy9829         164 NCISAQIKRTHFNY-----DQPEKG-E----MSF-RK-----GDVF--HVI-------DTLHNGVVGS-----W------  207 (333)
Q Consensus       164 ~~v~L~v~R~~~~~-----~~p~~~-~----l~~-~~-----g~~~--hv~-------~sl~~~~lG~-----~------  207 (333)
                      ..+.|.|.|.....     .+|... .    +.. ..     +..+  .++       .......++.     .      
T Consensus       234 ~~v~l~V~R~g~~~~~~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~l  313 (721)
T 2xkx_A          234 DVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVI  313 (721)
T ss_pred             CeEEEEEEeCCcccccCCCCCCCcccCCCCCcccccCCcccccccccccCCCCCCcccCCcccccccccccccceEEEEE
Confidence            88999998843221     001000 0    000 00     0000  000       0000000000     0      


Q ss_pred             cceeecccccc-----cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         208 QVFRIDFGIIL-----GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       208 ~~~~~d~G~~l-----~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      ......+|+.+     ..++||++|.++   ++|++.|+|++||+|++|||+++.+++++|++++|+.+.+.+.|+|.|+
T Consensus       314 ~~~~~~lG~~i~~~~~~~gv~V~~V~~g---s~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~  390 (721)
T 2xkx_A          314 HRGSTGLGFNIVGGEDGEGIFISFILAG---GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK  390 (721)
T ss_pred             EECCCCccEEEeccCCCCCeEEEEeCCC---ChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence            00012356654     258999999999   9999999999999999999999999999999999999999999999887


Q ss_pred             CC
Q psy9829         283 VP  284 (333)
Q Consensus       283 ~~  284 (333)
                      ..
T Consensus       391 ~~  392 (721)
T 2xkx_A          391 PE  392 (721)
T ss_pred             ch
Confidence            53

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.53  E-value=2.2e-15  Score=148.02  Aligned_cols=154  Identities=10%  Similarity=0.084  Sum_probs=55.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      +.+|||.|.|+.+.    ..+++++|++|.|||.|         +..++|++||+ +.||+.++.+.+  .++.+++.. 
T Consensus       215 ge~lG~~i~~~~~g----~~~~g~~V~~V~~gspA---------~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  281 (388)
T 3suz_A          215 GEILGVVVVESGWG----SILPTVILANMMNGGPA---------ARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK  281 (388)
T ss_dssp             SCCCCCCCBCC-------CCSCCCBCCCCCCSSHH---------HHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCT
T ss_pred             CCceeEEEEecCCC----CcCCCEEEEeeCCCCHH---------HHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhcc
Confidence            67999999983221    24678999999998754         44445799999 589999999984  556677764 


Q ss_pred             -CCceEEEEEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCCC
Q psy9829         163 -HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQ  241 (333)
Q Consensus       163 -g~~v~L~v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~  241 (333)
                       +..++|.|.|.....      .        ..+..          ......+|+.+.. .||.+|.++   ++|++.| 
T Consensus       282 ~~~~v~l~v~r~~~~~------~--------v~l~~----------~~~~~~lG~~i~~-g~I~~V~~g---s~A~~aG-  332 (388)
T 3suz_A          282 NQTQVKLNIVSCPPVT------T--------VLIKR----------PDLKYQLGFSVQN-GIICSLMRG---GIAERGG-  332 (388)
T ss_dssp             TCSCEEEEEEECCSCC----------------------------------------------------------------
T ss_pred             CCCccccccccccccc------e--------eeEee----------cCCCCccceEEec-CEEEEeecC---CHHHHcC-
Confidence             344899998732111      0        00000          0011235555443 389999999   9999888 


Q ss_pred             CCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       242 L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      |++||+|++|||+++.+++|++++++|+.+...++|+|...
T Consensus       333 L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~  373 (388)
T 3suz_A          333 VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA  373 (388)
T ss_dssp             -----------------------------------------
T ss_pred             CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence            99999999999999999999999999999999999988543

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=99.42  E-value=5.9e-14  Score=133.57  Aligned_cols=94  Identities=22%  Similarity=0.451  Sum_probs=82.5

Q ss_pred             CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCC-CcchhhHHHHHh
Q psy9829           2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGI-PKYHTNLARQRS   80 (333)
Q Consensus         2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~-~Es~~ki~~rae   80 (333)
                      +|-++..+++++|++++|++++++||+|||||+++++++|+...++|++|||+|||.+.|++++.+. +++.+++..++.
T Consensus       165 lE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~  244 (292)
T 3tvt_A          165 IEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAI  244 (292)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHH
T ss_pred             EEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHH
Confidence            4556778899999999999999999999999999999999999999999999999999999766554 456788888988


Q ss_pred             hccccccceeeEEEe
Q psy9829          81 RVLFPVGSTFVGSVL   95 (333)
Q Consensus        81 r~~qE~G~~~g~~i~   95 (333)
                      +++++++..|...|.
T Consensus       245 k~e~e~~~~fD~vIv  259 (292)
T 3tvt_A          245 KMEQEFGEYFTGVVQ  259 (292)
T ss_dssp             HHHHHHTTTCSEEEC
T ss_pred             HHHHhhhhhCCEEEE
Confidence            888888877777765

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.33  E-value=2e-12  Score=101.19  Aligned_cols=70  Identities=43%  Similarity=0.715  Sum_probs=63.8

Q ss_pred             ecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         212 IDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       212 ~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      ..||+.+.+++||.+|.++   ++|++.|+|++||+|++|||+++.+++++|+.++|+.+.+.++|+|.+...
T Consensus        13 ~~~G~~~~~gv~V~~V~~g---spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~   82 (88)
T 3e17_A           13 EEYGLRLGSQIFVKEMTRT---GLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLE   82 (88)
T ss_dssp             CCCCEEEEEEEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC--
T ss_pred             CCCCEEEeCCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCc
Confidence            4678887789999999999   999999999999999999999999999999999999999999999976643

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=99.32  E-value=7.1e-13  Score=127.13  Aligned_cols=87  Identities=32%  Similarity=0.603  Sum_probs=66.3

Q ss_pred             CCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCC-cchhhH---HHHHhhcc
Q psy9829           8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIP-KYHTNL---ARQRSRVL   83 (333)
Q Consensus         8 ~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~-Es~~ki---~~raer~~   83 (333)
                      .++.+++++++|++++++||+|||||++|++++|+..+++|++|||+|||++.|+++++|.+ ++++.+   ...+.+++
T Consensus       180 i~~~~fis~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE  259 (308)
T 3kfv_A          180 DSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLR  259 (308)
T ss_dssp             -----CCCHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHH
T ss_pred             ccCCCeecHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999998877754 333333   22333344


Q ss_pred             ccccceeeEEE
Q psy9829          84 FPVGSTFVGSV   94 (333)
Q Consensus        84 qE~G~~~g~~i   94 (333)
                      ++++.-|...|
T Consensus       260 ~~~~~~FD~vI  270 (308)
T 3kfv_A          260 KHSSHLFTATI  270 (308)
T ss_dssp             HHHGGGCSEEE
T ss_pred             HhhhccCcEEE
Confidence            55666677766

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.30  E-value=1e-12  Score=132.50  Aligned_cols=87  Identities=41%  Similarity=0.714  Sum_probs=69.2

Q ss_pred             CCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCC-cc---hhhHHHHHhhccc
Q psy9829           9 KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIP-KY---HTNLARQRSRVLF   84 (333)
Q Consensus         9 ~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~-Es---~~ki~~raer~~q   84 (333)
                      ..+..|++++|++++++||||||||++|++++|+.++++|++|||+|||++.|+++|+|+. ++   ..++...++++++
T Consensus       264 ~~Y~FTs~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~  343 (468)
T 3shw_A          264 RSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRK  343 (468)
T ss_dssp             ---CBCCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHH
T ss_pred             ccCCcccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            3466799999999999999999999999999999999999999999999999998766653 22   3334444444556


Q ss_pred             cccceeeEEEe
Q psy9829          85 PVGSTFVGSVL   95 (333)
Q Consensus        85 E~G~~~g~~i~   95 (333)
                      ++...|...|.
T Consensus       344 ~~~~~fD~vIv  354 (468)
T 3shw_A          344 NNHHLFTTTIN  354 (468)
T ss_dssp             HHGGGCSEEEE
T ss_pred             hhhccCCEEEE
Confidence            67777888777

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.28  E-value=3.7e-11  Score=103.72  Aligned_cols=145  Identities=14%  Similarity=0.123  Sum_probs=105.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcch--hhhhhhh-c
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVG--SWQVFRI-A  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~--a~~alr~-~  162 (333)
                      ..+|||.+.+.         +.+++|++|.|||.|         +.- +|++||+ +.+|+..+.+...  .+..++. .
T Consensus        15 ~~~lG~~~~~~---------~~g~~V~~v~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   75 (166)
T 1w9e_A           15 DGKIGLRLKSI---------DNGIFVQLVQANSPA---------SLV-GLRFGDQVLQINGENCAGWSSDKAHKVLKQAF   75 (166)
T ss_dssp             TSCCSEEEEEE---------TTEEEEEEECTTSHH---------HHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCcEeEEEEeC---------CCCEEEEEECCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            35899998852         478999999998755         332 4799999 5899999999865  3344444 3


Q ss_pred             CCceEEEEEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCCCC
Q psy9829         163 HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQL  242 (333)
Q Consensus       163 g~~v~L~v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L  242 (333)
                      +..+.|.|+| ....             ....++.    .       ....+|+.+..+ +|.++.++   ++|++.| |
T Consensus        76 ~~~v~l~vr~-~~~~-------------~~v~l~~----~-------~~~~lG~~~~~g-~v~~v~~~---s~a~~aG-l  125 (166)
T 1w9e_A           76 GEKITMTIRD-RPFE-------------RTITMHK----D-------STGHVGFIFKNG-KITSIVKD---SSAARNG-L  125 (166)
T ss_dssp             SSEEEEEEEC-CTTC-------------EEEEEEC----C-------TTSCCSEEEETT-EEEEECTT---SHHHHTT-C
T ss_pred             CCEEEEEEEc-CCCc-------------EEEEEec----C-------CCCcEeEEEeCC-EEEEEccC---CHHHHcC-C
Confidence            4579999944 2110             0011110    0       012345544344 89999999   8888776 9


Q ss_pred             CCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         243 AEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       243 ~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      ++||+|++|||+.+.++.++++...++.....+.|.|.
T Consensus       126 ~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~  163 (166)
T 1w9e_A          126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM  163 (166)
T ss_dssp             CSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             CCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence            99999999999999999999999999999998888764

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.28  E-value=1.8e-12  Score=127.79  Aligned_cols=87  Identities=41%  Similarity=0.721  Sum_probs=69.7

Q ss_pred             CCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCC-cchhh---HHHHHhhccc
Q psy9829           9 KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIP-KYHTN---LARQRSRVLF   84 (333)
Q Consensus         9 ~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~-Es~~k---i~~raer~~q   84 (333)
                      ..+..+++++|++++++||||||||++|++++|+.++++|++|||+|||++.|+++++|++ ++++.   +.+.++++++
T Consensus       272 ~~Y~Fv~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~  351 (391)
T 3tsz_A          272 RSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRK  351 (391)
T ss_dssp             C--CCCCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHH
T ss_pred             ccCCcCcHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999998877754 33333   3333344456


Q ss_pred             cccceeeEEEe
Q psy9829          85 PVGSTFVGSVL   95 (333)
Q Consensus        85 E~G~~~g~~i~   95 (333)
                      ++...|...|.
T Consensus       352 ~~~~~fd~viv  362 (391)
T 3tsz_A          352 NNHHLFTTTIN  362 (391)
T ss_dssp             HHGGGCSEEEE
T ss_pred             hccccCcEEEE
Confidence            67777887776

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=99.25  E-value=2.4e-12  Score=122.32  Aligned_cols=92  Identities=26%  Similarity=0.389  Sum_probs=75.3

Q ss_pred             CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCcchhhHHHHHhh
Q psy9829           2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSR   81 (333)
Q Consensus         2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~raer   81 (333)
                      +|-.++.+++++|+.++|++++++|++||||++++++++|+..+++|++|||+|||.+.|++|++|.+++  .+..+.++
T Consensus       170 lE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R~t~~--~i~~rl~~  247 (295)
T 1kjw_A          170 IEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEE--QARKAFDR  247 (295)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSCHH--HHHHHHHH
T ss_pred             EEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhcCCHH--HHHHHHHH
Confidence            4556677889999999999999999999999999999999999999999999999999999999998874  24444444


Q ss_pred             c---cccccceeeEEEe
Q psy9829          82 V---LFPVGSTFVGSVL   95 (333)
Q Consensus        82 ~---~qE~G~~~g~~i~   95 (333)
                      +   ++++...|...|.
T Consensus       248 a~~~e~~~~~~fd~viv  264 (295)
T 1kjw_A          248 ATKLEQEFTECFSAIVE  264 (295)
T ss_dssp             HHHHHHHHGGGCSEEEC
T ss_pred             HHHHHHhccccCeEEEE
Confidence            3   3444545655553

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.15  E-value=7.6e-11  Score=95.44  Aligned_cols=63  Identities=21%  Similarity=0.368  Sum_probs=57.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc---CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS---KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s---~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++|+|+.++|+.+   ...|.|+|.|...+
T Consensus        33 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~~   98 (108)
T 3cbz_A           33 GGIYIGSIMKG---GAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGG   98 (108)
T ss_dssp             CEEEEEEECTT---SHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC-
T ss_pred             CCEEEEEECCC---ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCCC
Confidence            57999999999   99999999999999999999999999999999999988   45799999997643

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.13  E-value=8.8e-11  Score=98.52  Aligned_cols=62  Identities=24%  Similarity=0.369  Sum_probs=58.4

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPR  285 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~~  285 (333)
                      ++||.+|.++   ++|++.|+|++||+|++|||+++.+++|+|++++|+.++  +.|.|+|.|+.+.
T Consensus        66 gv~V~~V~~g---spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~~  129 (131)
T 1wfg_A           66 CAFITKVKKG---SLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPS  129 (131)
T ss_dssp             EEEEEEECTT---SHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECSC
T ss_pred             CEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCCC
Confidence            7999999999   999999999999999999999999999999999999986  8899999998653

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.13  E-value=6.1e-11  Score=98.91  Aligned_cols=64  Identities=27%  Similarity=0.320  Sum_probs=59.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-------CCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-------KEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-------~~~v~L~V~R~~~~~  286 (333)
                      .++||.+|.++   ++|+++|+|++||+|++|||+++.+++|+||+.+|+.+       .+.|.|+|.|+..+.
T Consensus        55 ~gi~V~~V~~g---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~~~  125 (127)
T 1wg6_A           55 LGIFIKSIIHG---GAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPS  125 (127)
T ss_dssp             EEEEEEECCSS---SSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSCSS
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCCCC
Confidence            37999999999   99999999999999999999999999999999999987       789999999987654

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.11  E-value=1.4e-10  Score=96.23  Aligned_cols=64  Identities=31%  Similarity=0.470  Sum_probs=59.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCC-CCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD-GMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~-~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++. +++++++..+|+.+.+.|.|+|.|+....
T Consensus        54 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~  118 (128)
T 2db5_A           54 VDIFVKDVQPG---SVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHT  118 (128)
T ss_dssp             EEEEEECCCTT---SHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECCCSS
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence            37999999999   999999999999999999999997 99999999999999999999999986543

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=1.8e-10  Score=92.58  Aligned_cols=66  Identities=18%  Similarity=0.329  Sum_probs=60.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA  288 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~~  288 (333)
                      .++||++|.++   ++|++.|.|++||+|++|||+++.++++.++..+|+.+.+.+.|+|.|..+.+++
T Consensus        41 ~gv~V~~V~~~---spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~s  106 (107)
T 1uhp_A           41 EGIFVSKIVDS---GPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS  106 (107)
T ss_dssp             CCCEEEEECSS---SHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCSSCSC
T ss_pred             CCEEEEEeCCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCCCCCC
Confidence            47999999999   9999998899999999999999999999999999999999999999998766543

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.10  E-value=7.3e-11  Score=97.63  Aligned_cols=61  Identities=20%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||++|.++   ++|++.|+|++||+|++|||+++.+++++|+..+|+.+.+.|.|+|.|..
T Consensus        53 ~gv~V~~V~~g---spA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~~  113 (118)
T 3b76_A           53 LPIYVISVEPG---GVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVK  113 (118)
T ss_dssp             CCEEEEEECTT---SHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEEE
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            46999999999   99999999999999999999999999999999999999999999998854

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.10  E-value=1.4e-10  Score=95.96  Aligned_cols=63  Identities=21%  Similarity=0.330  Sum_probs=59.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|.|++||+|++|||+++.+++++++..+|+.+.+.|.|+|.|+...
T Consensus        53 ~~~~V~~V~~~---spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~  115 (120)
T 2iwo_A           53 VPIFIAMMHPT---GVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDV  115 (120)
T ss_dssp             EEEEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECCTTS
T ss_pred             CCEEEEEECCC---CHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            37999999999   9999998999999999999999999999999999999999999999998654

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=1.4e-10  Score=93.29  Aligned_cols=64  Identities=23%  Similarity=0.351  Sum_probs=59.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+....
T Consensus        40 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~  103 (107)
T 1wf8_A           40 LGIFVKTVTEG---GAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSG  103 (107)
T ss_dssp             EEEEEEEECTT---CHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECCCS
T ss_pred             CCEEEEEeCCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCCC
Confidence            47999999999   99999999999999999999999999999999999999999999999986543

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.08  E-value=2.3e-10  Score=95.62  Aligned_cols=63  Identities=19%  Similarity=0.374  Sum_probs=57.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCc-eEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK-LSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~-v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|.|++||+|++|||+++.+++|+||+++|+.+.+. +.|+|.|....
T Consensus        57 ~~i~I~~V~~g---s~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~  120 (130)
T 1i16_A           57 KPLTINRIFKG---AASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ  120 (130)
T ss_dssp             CCCEEEEECSS---CCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESSC
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCCCC
Confidence            46999999999   99999999999999999999999999999999999999765 99999987543

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.08  E-value=1.8e-10  Score=93.61  Aligned_cols=61  Identities=26%  Similarity=0.420  Sum_probs=57.0

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CceEEEEeccCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK----EKLSLTIRREVP  284 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~----~~v~L~V~R~~~  284 (333)
                      ++||.+|.++   ++|++.|+|++||+|++|||+++.+++|+||+++|+.+.    ..+.|.+.|+..
T Consensus        42 ~~~V~~v~~~---s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           42 LVYIHEVIPG---GDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             SEEEEEECTT---SHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred             CEEEEEeCCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence            6999999999   999999999999999999999999999999999999987    678999988754

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=2.1e-10  Score=94.04  Aligned_cols=63  Identities=25%  Similarity=0.300  Sum_probs=59.0

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      ++||.+|.++   ++|++.|+|++||+|++|||+.+.+++++|+.++|+...+.+.|+|.|.....
T Consensus        43 ~~~V~~V~~~---spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~  105 (117)
T 1v62_A           43 VITIDRIKPA---SVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQ  105 (117)
T ss_dssp             EEEEEECCTT---SHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTBC
T ss_pred             CEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCCCC
Confidence            4999999999   99999999999999999999999999999999999998999999999986543

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.07  E-value=2.3e-10  Score=92.09  Aligned_cols=61  Identities=15%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC--ceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~--~v~L~V~R~~  283 (333)
                      +.+||++|.+|   ++|++++.|++||.|++|||+++.+++|.|++++|+.+..  .++|++.++-
T Consensus        28 g~~~I~rI~~g---g~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~   90 (95)
T 3gge_A           28 GYAFIKRIKDG---GVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK   90 (95)
T ss_dssp             SCCEEEEECTT---SHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             CcEEEEEEcCC---ChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECcc
Confidence            35899999999   9999999999999999999999999999999999999765  7788776654

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.06  E-value=3.3e-10  Score=90.72  Aligned_cols=65  Identities=25%  Similarity=0.364  Sum_probs=60.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+.....
T Consensus        38 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~  102 (106)
T 3axa_A           38 LGIYVKSVVKG---GAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRR  102 (106)
T ss_dssp             EEEEEEEEBTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCSSCC
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcccc
Confidence            47999999999   999999999999999999999999999999999999999999999999865443

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.05  E-value=2.8e-10  Score=91.87  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=57.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++|+.++|+.+ .+.|.|+|.|...
T Consensus        44 ~g~~V~~v~~~---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~~  106 (108)
T 2d92_A           44 SVIVIRSLVAD---GVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGPS  106 (108)
T ss_dssp             EEEEEEEECTT---CHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCCC
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCC
Confidence            47999999999   99999999999999999999999999999999999997 4689999998753

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.05  E-value=1.9e-10  Score=101.13  Aligned_cols=60  Identities=25%  Similarity=0.387  Sum_probs=57.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+|||++|.++   ++|++.|+|++||+|++|||+++.+++|.+|+.+|+.+...|.|+|.|+
T Consensus       111 ~gi~V~~V~~g---spA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~V~R~  170 (170)
T 3egg_C          111 LGIFVKTVTEG---GAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE  170 (170)
T ss_dssp             BEEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEEEEEC
T ss_pred             CCEEEEEECCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            47999999999   9999999999999999999999999999999999999999999999985

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=3.2e-10  Score=90.66  Aligned_cols=63  Identities=22%  Similarity=0.384  Sum_probs=58.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++|+.++|+.+  .+.|.|+|.|+...
T Consensus        34 ~~~~V~~V~~~---spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~   98 (103)
T 1uep_A           34 QPILIGAVIAM---GSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLS   98 (103)
T ss_dssp             SCCBEEEECTT---STTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCeEEEEeCCC---ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCCC
Confidence            46999999999   99999999999999999999999999999999999998  68999999998654

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=3.1e-10  Score=93.31  Aligned_cols=61  Identities=25%  Similarity=0.407  Sum_probs=57.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||++|.++   ++|++.|+|++||+|++|||+++.+++++++..+|+.+.+.|.|+|.|+.
T Consensus        54 ~gv~V~~V~~g---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~  114 (117)
T 2byg_A           54 NSIYVTKIIDG---GAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT  114 (117)
T ss_dssp             CCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            47999999999   99999999999999999999999999999999999999999999999875

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.04  E-value=3.3e-10  Score=88.67  Aligned_cols=62  Identities=18%  Similarity=0.281  Sum_probs=57.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++++.++|+.+.+.++|+|.|...
T Consensus        28 ~~~~V~~v~~g---spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~   89 (93)
T 3o46_A           28 GAIIVARIMRG---GAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSK   89 (93)
T ss_dssp             CCEEEEEECTT---SHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEEEECC--
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            47999999999   999999999999999999999999999999999999999999999987643

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.04  E-value=3.2e-10  Score=91.82  Aligned_cols=65  Identities=25%  Similarity=0.379  Sum_probs=60.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+....+
T Consensus        35 ~g~~V~~V~~~---s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~   99 (113)
T 2g5m_B           35 LGIFVKTVTEG---GAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQ   99 (113)
T ss_dssp             EEEEEEECCTT---SHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEEEEECCCCTT
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCc
Confidence            47999999999   999999999999999999999999999999999999999999999999876543

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.03  E-value=2.5e-10  Score=89.30  Aligned_cols=62  Identities=18%  Similarity=0.297  Sum_probs=55.4

Q ss_pred             ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      ||+.+..+ +|.++.++   ++|++.| |++||+|++|||+++.+++|+|++++|+.+...|+|+|.
T Consensus        18 ~Gf~i~~g-~I~~v~~g---spA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~   79 (82)
T 1r6j_A           18 VGFIFKNG-KITSIVKD---SSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM   79 (82)
T ss_dssp             CCEEEETT-EEEEECTT---SHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             eEEEEECC-EEEEecCC---CHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEE
Confidence            55555444 48999999   9999998 999999999999999999999999999999999999985

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.03  E-value=4.1e-10  Score=91.98  Aligned_cols=79  Identities=20%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.|.||.++|++.+++.++||++|.|||         ||+  .+|++||+ +.||+.++.+.+  .++.+++..+
T Consensus        25 ~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~s---------pA~--~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~   93 (117)
T 2csj_A           25 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGG---------PAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG   93 (117)
T ss_dssp             SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTS---------SHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSC
T ss_pred             CCccCEEEeCCcCCccccCCCCCEEEEEECCCC---------ccc--ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCC
Confidence            579999999999999998788999999999965         565  45799999 589999999874  4556777788


Q ss_pred             CceEEEEEEeecc
Q psy9829         164 NCISAQIKRTHFN  176 (333)
Q Consensus       164 ~~v~L~v~R~~~~  176 (333)
                      ..+.|.|.|....
T Consensus        94 ~~v~l~v~R~~~~  106 (117)
T 2csj_A           94 KIAAIVVKRPRKV  106 (117)
T ss_dssp             SEEEEEEEEEEEC
T ss_pred             CeEEEEEEECCcc
Confidence            9999999986543

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.03  E-value=4.8e-10  Score=87.96  Aligned_cols=62  Identities=21%  Similarity=0.379  Sum_probs=58.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++++..+++.+.+.+.|+|.|+..
T Consensus        33 ~g~~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   94 (96)
T 1d5g_A           33 GGIYVKAVIPQ---GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94 (96)
T ss_dssp             SCCEEEEECTT---SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEECCSC
T ss_pred             CCEEEEEeCCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence            47999999999   999999899999999999999999999999999999988999999998764

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.03  E-value=4.3e-10  Score=90.69  Aligned_cols=63  Identities=22%  Similarity=0.344  Sum_probs=59.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+...
T Consensus        32 ~gv~V~~V~~g---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~   94 (106)
T 4amh_A           32 NSIYVTKIIEG---GAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGSG   94 (106)
T ss_dssp             CCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECCSSS
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Confidence            37999999999   9999999999999999999999999999999999999999999999998643

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.03  E-value=2.9e-10  Score=88.73  Aligned_cols=62  Identities=18%  Similarity=0.276  Sum_probs=57.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++++.|++||+|++|||+++.+++++|+.++|+.+.+.+.|+|.|...
T Consensus        25 ~~~~I~~V~~g---spA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~   86 (88)
T 1kwa_A           25 NHCIVARIMHG---GMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR   86 (88)
T ss_dssp             GGEEEEEECTT---SHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEECCcC
Confidence            36999999999   999988889999999999999999999999999999998899999988653

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.03  E-value=4.1e-10  Score=89.30  Aligned_cols=63  Identities=22%  Similarity=0.376  Sum_probs=58.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+.+.++++.++..+++...+.+.|+|.|+...
T Consensus        37 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   99 (101)
T 2jik_A           37 SGIYVSRIKEN---GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES   99 (101)
T ss_dssp             CCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            47999999999   8998888899999999999999999999999999999888999999998654

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.03  E-value=5e-10  Score=88.97  Aligned_cols=64  Identities=22%  Similarity=0.365  Sum_probs=59.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+....
T Consensus        34 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   97 (102)
T 2i1n_A           34 PGIFITKIIPG---GAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPP   97 (102)
T ss_dssp             CCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCCC
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Confidence            47999999999   99999999999999999999999999999999999999999999999987543

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=6e-10  Score=91.40  Aligned_cols=65  Identities=22%  Similarity=0.358  Sum_probs=60.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+.....
T Consensus        47 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~  111 (120)
T 2eno_A           47 SGIYVSRIKEN---GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQN  111 (120)
T ss_dssp             CSEEEEEECSS---SHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEEECCC
T ss_pred             CCEEEEEECCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcCCC
Confidence            47999999999   999999999999999999999999999999999999999999999999876543

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.01  E-value=4.5e-10  Score=89.92  Aligned_cols=64  Identities=20%  Similarity=0.322  Sum_probs=58.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+....
T Consensus        33 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~   96 (105)
T 2awx_A           33 NSIYVTKIIEG---GAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY   96 (105)
T ss_dssp             CCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEECCCC--
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence            47999999999   99999999999999999999999999999999999999999999999987543

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.00  E-value=3.2e-10  Score=91.32  Aligned_cols=63  Identities=17%  Similarity=0.317  Sum_probs=57.6

Q ss_pred             EEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-----cCCceEEEEeccCCCCC
Q psy9829         222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-----SKEKLSLTIRREVPRPT  287 (333)
Q Consensus       222 IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-----s~~~v~L~V~R~~~~~~  287 (333)
                      +||.+|.++   ++|++.|+|++||+|++|||+++.+++|+||+++|+.     ..+.+.|+|.|....+.
T Consensus        34 ~~I~~v~~~---s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~~~~~  101 (103)
T 1ufx_A           34 PRIVTIQRG---GSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGPS  101 (103)
T ss_dssp             CEEEEECTT---SHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCCCTT
T ss_pred             EEEEEeCCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcccCCC
Confidence            599999999   9999999999999999999999999999999999998     47789999999865543

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.00  E-value=7.9e-10  Score=86.71  Aligned_cols=63  Identities=25%  Similarity=0.330  Sum_probs=58.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+...
T Consensus        29 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   91 (95)
T 2vwr_A           29 PGVFILDLLEG---GLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKP   91 (95)
T ss_dssp             CSEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEESCS
T ss_pred             CCEEEEEeCCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCcC
Confidence            47999999999   9999999999999999999999999999999999999999999999997643

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.00  E-value=7.6e-10  Score=86.99  Aligned_cols=63  Identities=17%  Similarity=0.281  Sum_probs=58.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++++.++|+...+.+.|+|.|+...
T Consensus        32 ~~~~V~~V~~~---spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~   94 (97)
T 2jil_A           32 RPVVITSVRPG---GPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSE   94 (97)
T ss_dssp             EEEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCC
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Confidence            47999999999   9999888899999999999999999999999999999889999999998754

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.00  E-value=6.1e-10  Score=83.99  Aligned_cols=68  Identities=40%  Similarity=0.693  Sum_probs=60.2

Q ss_pred             ecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         212 IDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       212 ~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      ..+|+.+..+++|.++.++   ++|++.|.|++||+|++|||+++.+++++++.++|+...+.+.|+|.|+
T Consensus        13 ~~~g~~~~~gv~V~~v~~~---s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           13 EEYGLRLASHIFVKEISQD---SLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             CCCCEEEEEEEEEEEECTT---SHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CCCCEEEeCCEEEEEECCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            4566665578999999999   8888887899999999999999999999999999998888999999885

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-09  Score=88.54  Aligned_cols=63  Identities=21%  Similarity=0.325  Sum_probs=59.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+|+.+.+.+.|+|.|....
T Consensus        50 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~  112 (117)
T 2ehr_A           50 KGIFIKQVLED---SPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST  112 (117)
T ss_dssp             CSEEEEEECSS---STTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEEECCBSCC
T ss_pred             CCEEEEEeCCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            47999999999   9999999999999999999999999999999999999999999999887654

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=3.7e-10  Score=90.77  Aligned_cols=63  Identities=21%  Similarity=0.369  Sum_probs=59.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+..+
T Consensus        42 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           42 GGIYVKAVIPQ---GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP  104 (108)
T ss_dssp             CCCBEEEECTT---STHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEEECCCCS
T ss_pred             CCEEEEEECCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            47999999999   9999999999999999999999999999999999999999999999998654

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.99  E-value=8.3e-10  Score=85.68  Aligned_cols=70  Identities=39%  Similarity=0.660  Sum_probs=60.9

Q ss_pred             ecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         212 IDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       212 ~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      ..+|+.+..+++|.+|.++   ++|++.|+|++||+|++|||+++.+++++++.++|+.+.+.+.|+|.|+..
T Consensus        15 ~~~g~~~~~gv~V~~v~~~---s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~   84 (92)
T 3cyy_A           15 EEYGLRLASHIFVKEISQD---SLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDER   84 (92)
T ss_dssp             SCCCEEEEEEEEEEEECTT---CHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC---
T ss_pred             CCCCEEEeCCEEEEEECCC---ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCc
Confidence            3566666578999999999   888888889999999999999999999999999999988899999998764

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.99  E-value=5.3e-09  Score=103.95  Aligned_cols=149  Identities=16%  Similarity=0.184  Sum_probs=98.3

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEeeccC------
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNY------  177 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~------  177 (333)
                      ..|++|+.|.|||.         |+. .+|++||+ +.+|+..+.+......++..  .+..++|.|.|.....      
T Consensus       262 ~~G~~V~~V~~~sp---------A~~-aGL~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l  331 (436)
T 4a8c_A          262 QRGAFVSEVLPGSG---------SAK-AGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTL  331 (436)
T ss_pred             CcceEEEEECCCCh---------HHH-CCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence            47999999999764         444 34799999 58999999887655455543  4678999998832111      


Q ss_pred             -CCCCCCCCCCCCCceeEEeeecCCCccccccceeecccc-cccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCcc
Q psy9829         178 -DQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHP  255 (333)
Q Consensus       178 -~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~-~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~  255 (333)
                       ..+....   .. .      .+..+..+..  . .++.. ....+++|.+|.++   ++|++.| |++||+|++|||+.
T Consensus       332 ~~~~~~~~---~~-~------~~~~gl~~~~--~-~~~~~~~~~~gv~V~~V~~~---spA~~aG-L~~GD~I~~vng~~  394 (436)
T 4a8c_A          332 DTSTSSSA---SA-E------MITPALEGAT--L-SDGQLKDGGKGIKIDEVVKG---SPAAQAG-LQKDDVIIGVNRDR  394 (436)
T ss_pred             CCCCcccc---cc-c------ccccCceeee--c-ccccccCCCCCEEEEEeCCC---CHHHHcC-CCCCCEEEEECCEE
Confidence             0000000   00 0      0000000000  0 00000 01147999999999   8887776 99999999999998


Q ss_pred             CCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         256 TDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       256 ~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      +.  +.+|.+++|+...+.+.|+|.|+..
T Consensus       395 v~--~~~~~~~~l~~~~~~v~l~v~R~g~  421 (436)
T 4a8c_A          395 VN--SIAEMRKVLAAKPAIIALQIVRGNE  421 (436)
T ss_pred             CC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence            76  5799999999988899999999864

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=7e-10  Score=91.26  Aligned_cols=62  Identities=23%  Similarity=0.406  Sum_probs=58.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||++|.++   ++|++.|+|++||+|++|||+++.+++++++..+|+.+.+.|.|+|.|+..
T Consensus        53 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~  114 (117)
T 2fne_A           53 LPIYVKTVFAK---GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE  114 (117)
T ss_dssp             EEEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECSC
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            47999999999   999999999999999999999999999999999999999999999999753

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=6.6e-10  Score=90.99  Aligned_cols=62  Identities=16%  Similarity=0.305  Sum_probs=58.8

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      ++||.+|.++   ++|++.|+|++||+|++|||+++.++++.|+..+|+.+.+.+.|+|.|+...
T Consensus        50 g~~V~~v~~~---s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           50 GAYIAKILPG---GSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             EEEEEEECTT---CHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCCC
T ss_pred             CEEEEEECCC---CHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEECCcc
Confidence            6999999999   9999999999999999999999999999999999999999999999998653

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=7.3e-10  Score=88.69  Aligned_cols=62  Identities=24%  Similarity=0.343  Sum_probs=58.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.|.|++||+|++|||+++.++++.++..+|+.+.+.+.|+|.|+..
T Consensus        38 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           38 AGIFVSRIAEG---GAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG   99 (105)
T ss_dssp             CSCEEEECCTT---SSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred             CCEEEEEeCCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            47999999999   999999899999999999999999999999999999999999999999763

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.98  E-value=1.6e-09  Score=87.70  Aligned_cols=62  Identities=18%  Similarity=0.343  Sum_probs=58.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++...+.+.|+|.|..+
T Consensus        25 ~gv~V~~V~~g---spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~   86 (106)
T 2la8_A           25 IGCTIADLIQG---QYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP   86 (106)
T ss_dssp             SSEEEEECCTT---SCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEECCS
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence            47999999999   999999999999999999999999999999999999999999999998643

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.98  E-value=6.5e-10  Score=89.04  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.+.|++||+|++|||+++.+++++|+..+|+.+.+.+.|+|.|...
T Consensus        35 ~~~~V~~V~~~---s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~   96 (103)
T 2dc2_A           35 VPILISEIHPG---QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVAL   96 (103)
T ss_dssp             EEEEEEEECTT---SHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC-
T ss_pred             CCEEEEEECCC---CHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCC
Confidence            37999999999   999887789999999999999999999999999999999999999988754

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.97  E-value=8.7e-10  Score=85.82  Aligned_cols=61  Identities=18%  Similarity=0.348  Sum_probs=57.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++++..+++.+.+.+.|+|.|..
T Consensus        29 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   89 (92)
T 2qg1_A           29 TGVFVSDIVKG---GIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIS   89 (92)
T ss_dssp             CSCEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEccc
Confidence            47999999999   99999999999999999999999999999999999999999999999875

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.97  E-value=1.7e-09  Score=90.17  Aligned_cols=64  Identities=20%  Similarity=0.307  Sum_probs=58.5

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPRPT  287 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~~~  287 (333)
                      ++||.+|.++   ++|++.|+|++||+|++|||+++.+++++|+.++|+.+  .+.+.|+|.|+...+.
T Consensus        44 ~v~V~~V~~~---spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~  109 (129)
T 2kpk_A           44 FLQIKSLVLD---GPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPF  109 (129)
T ss_dssp             EEEEEEECTT---SHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSCCSS
T ss_pred             CEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCCC
Confidence            5999999999   99999999999999999999999999999999999998  5789999999865433

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.97  E-value=9.1e-10  Score=85.92  Aligned_cols=61  Identities=21%  Similarity=0.350  Sum_probs=57.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+.
T Consensus        33 ~gv~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~g   93 (94)
T 2fe5_A           33 NSIYITKIIEG---GAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG   93 (94)
T ss_dssp             CCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            47999999999   99998888999999999999999999999999999999899999998864

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.97  E-value=9.4e-10  Score=88.08  Aligned_cols=60  Identities=23%  Similarity=0.277  Sum_probs=55.9

Q ss_pred             CeEEEEEEccCcccCccccCC-CCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC----ceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTH-QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE----KLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg-~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~----~v~L~V~R~  282 (333)
                      .++||.+|.++   ++|++.| +|++||+|++|||+++.++++.++..+|+.+.+    .|.|+|.|+
T Consensus        43 ~~~~V~~V~~~---spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           43 MPVIVSRVAPG---TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN  107 (107)
T ss_dssp             EEEEEEEECTT---SHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred             CCeEEEEECCC---CchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence            36999999999   9999998 699999999999999999999999999999986    999999874

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.97  E-value=2.2e-10  Score=102.08  Aligned_cols=85  Identities=12%  Similarity=0.178  Sum_probs=74.8

Q ss_pred             CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCcccccccccc-ccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH
Q psy9829           2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYA-QFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR   79 (333)
Q Consensus         2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~-~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra   79 (333)
                      +|-....+++++|+.++|++++++|++||||++.+++++++.. .+.|++|||.|||.+.|+ +|+.|.+++.+.+..|.
T Consensus        68 lE~~~~~g~~YGt~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl  147 (186)
T 1ex7_A           68 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRL  147 (186)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred             EEEEEEcCceeeeecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3555667889999999999999999999999999999999985 788999999999999988 88889889888888888


Q ss_pred             hhccccc
Q psy9829          80 SRVLFPV   86 (333)
Q Consensus        80 er~~qE~   86 (333)
                      .++..|.
T Consensus       148 ~~a~~e~  154 (186)
T 1ex7_A          148 SAAQAEL  154 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766554

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.96  E-value=8.8e-10  Score=90.60  Aligned_cols=61  Identities=20%  Similarity=0.308  Sum_probs=56.4

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc----CCceEEEEeccCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS----KEKLSLTIRREVP  284 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s----~~~v~L~V~R~~~  284 (333)
                      .+||.+|.++   ++|++.|.|++||+|++|||+++.+++|+||+++|+..    .+.++|+|.|..+
T Consensus        44 ~i~I~~V~~g---spA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~~  108 (118)
T 1v6b_A           44 KVVVSAVYEG---GAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPP  108 (118)
T ss_dssp             SEEEEECCTT---SHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCS
T ss_pred             CEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCCc
Confidence            4999999999   99999989999999999999999999999999999876    6799999999653

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=85.54  Aligned_cols=63  Identities=22%  Similarity=0.347  Sum_probs=58.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+...
T Consensus        30 ~gv~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~   92 (98)
T 2opg_A           30 GAIIIHEVYEE---GAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAP   92 (98)
T ss_dssp             CSEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEECSSC
T ss_pred             CCEEEEEECCC---ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCCCC
Confidence            37999999999   8999888999999999999999999999999999999889999999997654

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.95  E-value=9.8e-10  Score=84.66  Aligned_cols=59  Identities=17%  Similarity=0.280  Sum_probs=54.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      .++||.+|.++   ++|++.+.|++||+|++|||+++.++++.++..+++.+.+.+.|+|.+
T Consensus        28 ~~~~V~~V~~g---spA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~~   86 (87)
T 4e34_A           28 VPILISEIHPG---QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY   86 (87)
T ss_dssp             EEEEEEEECTT---SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCEEEEEECCC---CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            46999999999   898887789999999999999999999999999999999999998864

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=2.6e-09  Score=88.14  Aligned_cols=64  Identities=27%  Similarity=0.356  Sum_probs=58.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~~  286 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+.+.+++++|+.++|+..  .+.+.|+|.|+.+..
T Consensus        44 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~  109 (123)
T 1ueq_A           44 EFLQVKSVIPD---GPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLP  109 (123)
T ss_dssp             CCCEEEEECTT---SHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCCCC
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCC
Confidence            36999999999   99999999999999999999999999999999999995  589999999986543

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=87.10  Aligned_cols=64  Identities=27%  Similarity=0.443  Sum_probs=58.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+.+.++++.++..+++...+.+.|+|.|+...+
T Consensus        38 ~~v~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~  101 (104)
T 2djt_A           38 TPLAVRGLLKD---GPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGP  101 (104)
T ss_dssp             CCCEEEEECTT---CHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEECCCCCCC
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCC
Confidence            46999999999   88888888999999999999999999999999999998899999999986544

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.95  E-value=4.6e-10  Score=108.69  Aligned_cols=82  Identities=12%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             eehHHHHHHHHcCCEEEEecCcc-ccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH---hhccccccc
Q psy9829          14 IRLSAIRDMMDRGRHGLLDITPN-AVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR---SRVLFPVGS   88 (333)
Q Consensus        14 tsl~sVr~V~e~gkhCILDv~~~-avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra---er~~qE~G~   88 (333)
                      +.+++|.+++++||+|||||+.| ++++|+...++|++|||+|||.+.|+ +|+.|.++..+.+..+.   +.++++...
T Consensus       217 seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~~~~~~  296 (337)
T 4dey_A          217 SEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPE  296 (337)
T ss_dssp             HHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHHSCGG
T ss_pred             hHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhCcc
Confidence            36777777888999999999998 99999999999999999999999999 67888887666666653   333445556


Q ss_pred             eeeEEEe
Q psy9829          89 TFVGSVL   95 (333)
Q Consensus        89 ~~g~~i~   95 (333)
                      .|...|.
T Consensus       297 ~FDyvIV  303 (337)
T 4dey_A          297 LFDVILD  303 (337)
T ss_dssp             GCSEEEC
T ss_pred             cCCEEEE
Confidence            7777776

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.95  E-value=7.3e-10  Score=89.33  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||+|+||.|.+..+ ++.+++|++|.|||.|         +..++|++||+ +.||+.++.+.+  .++.+++..+
T Consensus        12 ~~~~Gf~i~gG~~~~~~~-~~~gv~V~~V~~gspA---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   81 (106)
T 4amh_A           12 SKGLGFSIAGGVGNQHWP-GDNSIYVTKIIEGGAA---------HKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTS   81 (106)
T ss_dssp             CCCSCEEEEECTTSCSBT-TBCCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCC
T ss_pred             CCccCEEEEeccCCcccc-CCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            569999999999999875 6899999999997754         44334799999 589999998874  4566777788


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|.|.
T Consensus        82 ~~v~l~v~R~   91 (106)
T 4amh_A           82 DFVYLKVAKP   91 (106)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEeC
Confidence            8999999884

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.95  E-value=1.8e-09  Score=87.06  Aligned_cols=63  Identities=16%  Similarity=0.359  Sum_probs=58.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+.+.+++++++..+|+.+.+.+.|+|.|+...
T Consensus        38 ~g~~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~  100 (111)
T 2dlu_A           38 SGVVVRTIVPG---GLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAG  100 (111)
T ss_dssp             SSBEEEEECTT---SSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEESCTT
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            46999999999   8999888899999999999999999999999999999999999999997654

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.94  E-value=1.8e-09  Score=85.13  Aligned_cols=63  Identities=24%  Similarity=0.404  Sum_probs=58.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+.+.+++++++..+|+...+.+.|+|.|+...
T Consensus        30 ~~~~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~   92 (97)
T 1n7e_A           30 DPIIISSLTKG---GLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA   92 (97)
T ss_dssp             SCCEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCCC
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            46999999999   8999888899999999999999999999999999998888999999997654

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.94  E-value=7.9e-10  Score=90.04  Aligned_cols=63  Identities=25%  Similarity=0.393  Sum_probs=58.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCC-CCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD-GMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~-~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++. +++++++..+|+.+.+.+.|+|.|+...
T Consensus        49 ~gv~V~~V~~~---spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  112 (117)
T 2o2t_A           49 LGIFVQEIQEG---SVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLP  112 (117)
T ss_dssp             EEEEECCCCTT---SHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESSCCG
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeCCcc
Confidence            47999999999   999999999999999999999998 9999999999999999999999998643

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.94  E-value=8.9e-10  Score=87.05  Aligned_cols=63  Identities=17%  Similarity=0.338  Sum_probs=58.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++...+.+.|+|.|..+.
T Consensus        31 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~p~   93 (96)
T 2qkv_A           31 IGCTIADLIQG---QYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPA   93 (96)
T ss_dssp             SSEEEEEECTT---SCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC-
T ss_pred             CcEEEEEeCCC---ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence            47999999999   9999998999999999999999999999999999999999999999987543

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.94  E-value=7.3e-10  Score=85.94  Aligned_cols=60  Identities=22%  Similarity=0.421  Sum_probs=55.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC--ceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~--~v~L~V~R~  282 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+|+.+..  .+.|+|.|.
T Consensus        27 ~~~~V~~V~~~---spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~   88 (90)
T 2q9v_A           27 EPIYIGHIVPL---GAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT   88 (90)
T ss_dssp             SCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             CCEEEEEECCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence            46999999999   9999999999999999999999999999999999999865  899999885

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.4e-09  Score=84.61  Aligned_cols=62  Identities=21%  Similarity=0.378  Sum_probs=57.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.|.|++||+|++|||+++.+++++++..+++.+.+.+.|+|.|+..
T Consensus        30 ~~~~V~~V~~~---spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~   91 (93)
T 2dkr_A           30 SPIYISRVIPG---GVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGPS   91 (93)
T ss_dssp             CCCEEEEECTT---SHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEEECCCCS
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeCCC
Confidence            47999999999   888888789999999999999999999999999999998999999988753

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.93  E-value=2.7e-09  Score=85.03  Aligned_cols=61  Identities=20%  Similarity=0.328  Sum_probs=56.6

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  284 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~  284 (333)
                      ++||.+|.++   ++|++.+.|++||+|++|||+++.+++++|+.++|+.  ..+.+.|+|.|..+
T Consensus        38 ~~~V~~V~~~---spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~p  100 (101)
T 2yt7_A           38 TAVIANLLHG---GPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPP  100 (101)
T ss_dssp             CEEEEEECTT---STTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCCC
T ss_pred             CEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            5999999999   9999989999999999999999999999999999998  67899999988654

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.93  E-value=3.9e-09  Score=94.82  Aligned_cols=155  Identities=14%  Similarity=0.048  Sum_probs=92.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccC-CE-EEEceeeccCcchhhhhh-h-hc
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKG-DV-FHVIDTLHNGVVGSWQVF-R-IA  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~g-D~-I~Vnd~dv~gv~~a~~al-r-~~  162 (333)
                      |.|+|++.+-+.+      +..|++|++|.|||.|         +. .+|++| |+ +.+|+..+++......++ + ..
T Consensus         1 g~g~~~~~~~~~~------~~~G~~V~~V~~~SpA---------~~-AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~   64 (209)
T 3rle_A            1 GMGSSQSVEIPGG------GTEGYHVLRVQENSPG---------HR-AGLEPFFDFIVSINGSRLNKDNDTLKDLLKANV   64 (209)
T ss_dssp             -------CCCTTS------SSEEEEEEEECTTSHH---------HH-TTCCTTTEEEEEETTEECCSSSSHHHHHHHHTT
T ss_pred             CcchhhhhhccCC------CCCEEEEEEECCCCHH---------HH-CCCCcCCeEEEEECCEECcCHHHHHHHHHhcCC
Confidence            3566666654332      3569999999998754         43 357999 99 589999988775433332 2 24


Q ss_pred             CCceEEEEEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccc---------cCeEEEEEEccCccc
Q psy9829         163 HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL---------GNKIFVKEVTHRLDN  233 (333)
Q Consensus       163 g~~v~L~v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l---------~~~IfI~~I~~g~~a  233 (333)
                      +..++|.|.|.....              ...+.  +....  .|. ....+|+.+         ..+++|.+|.++   
T Consensus        65 g~~v~l~v~R~~~~~--------------~~~v~--l~p~~--~~~-~~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~---  122 (209)
T 3rle_A           65 EKPVKMLIYSSKTLE--------------LRETS--VTPSN--LWG-GQGLLGVSIRFCSFDGANENVWHVLEVESN---  122 (209)
T ss_dssp             TSCEEEEEEETTTCC--------------EEEEE--ECCCS--SSS-SSSSSCEEEEEEECTTGGGSCEEEEEECTT---
T ss_pred             CCEEEEEEEecCCce--------------EEEEE--Ecccc--ccc-ccCccceEEeecChhHccccceEEEEeCCC---
Confidence            677999998732110              00000  00000  000 001112211         147899999999   


Q ss_pred             CccccCCCCCC-CCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccC
Q psy9829         234 NASAGTHQLAE-GDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV  283 (333)
Q Consensus       234 g~Aa~dg~L~~-GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~  283 (333)
                      ++|++.| |++ ||+|++|||. .  .+.++..++|+.. .+.+.|.|.|..
T Consensus       123 spA~~aG-l~~~GD~I~~ing~-v--~~~~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A          123 SPAALAG-LRPHSDYIIGADTV-M--NESEDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SHHHHHT-CCTTTEEEEEESSC-C--CSSSCHHHHHHHTTTSCEEEEEEETT
T ss_pred             ChHHHCC-CCCCCCEEEECCCE-e--CCHHHHHHHHHhCCCCeEEEEEEECC
Confidence            7777654 999 9999999996 3  3456666777765 668999998864

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.93  E-value=3.3e-09  Score=84.88  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchh--hhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGS--WQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a--~~alr~~g  163 (333)
                      +.||||.+.||.++|++.+++.+++|++|.|||         ||+  .+|++||+ +.||+..+.+....  +..++..+
T Consensus        18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~s---------pA~--agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   86 (107)
T 2h2b_A           18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGG---------PAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSG   86 (107)
T ss_dssp             TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTS---------TTB--TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CCccCEEEecCcCCCcccCCCCCEEEEEECCCC---------chh--hCCCCCCEEEEECCEECCCccHHHHHHHhhCCC
Confidence            579999999999999998889999999999976         455  35799999 58999999988533  33345567


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|..
T Consensus        87 ~~v~l~v~R~~   97 (107)
T 2h2b_A           87 KNAKITIRRKK   97 (107)
T ss_dssp             SEEEEEEEEES
T ss_pred             CEEEEEEEECC
Confidence            88999998843

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=1.9e-09  Score=86.84  Aligned_cols=61  Identities=18%  Similarity=0.334  Sum_probs=57.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+.
T Consensus        36 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   96 (110)
T 1um1_A           36 PGLYIQTLLPG---SPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSD   96 (110)
T ss_dssp             SSEEEEEECTT---SHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            47999999999   99999999999999999999999999999999999999999999999974

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.92  E-value=1.8e-09  Score=83.85  Aligned_cols=59  Identities=19%  Similarity=0.302  Sum_probs=55.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      .++||.+|.++   ++|++.|.|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|
T Consensus        30 ~g~~V~~V~~~---spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r   88 (90)
T 1qav_A           30 MPILISKIFKG---LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEEECTT---SHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEE
T ss_pred             CCEEEEEECCC---CHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            47999999999   999988889999999999999999999999999999999999999977

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.92  E-value=1.8e-09  Score=89.84  Aligned_cols=62  Identities=21%  Similarity=0.328  Sum_probs=58.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||++|.++   ++|++.|.|++||+|++|||+++.+++++++..+|+.+.+.+.|+|.|...
T Consensus        65 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C           65 PGIFISRLVPG---GLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             EEEEEEEECTT---CHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEEEECCCC
T ss_pred             CCEEEEEECCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            57999999999   999999999999999999999999999999999999999999999998764

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.92  E-value=1.9e-09  Score=83.51  Aligned_cols=61  Identities=25%  Similarity=0.356  Sum_probs=56.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+..
T Consensus        27 ~~v~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   87 (89)
T 2q3g_A           27 VPLSISRLTPG---GKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAIT   87 (89)
T ss_dssp             EEEEEEEECTT---SHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEECC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence            47999999999   8888877 9999999999999999999999999999988999999998764

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=1.3e-09  Score=89.47  Aligned_cols=78  Identities=13%  Similarity=0.122  Sum_probs=64.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||+|.||.+.+..+ ++.+++|++|.+||.|         +..++|++||+ +.||++++.+++  .++.+++.++
T Consensus        34 ~~glG~~i~gg~~~~~~~-~~~gv~V~~V~~gspA---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g  103 (117)
T 2byg_A           34 PKGLGFSIAGGVGNQHIP-GDNSIYVTKIIDGGAA---------QKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTS  103 (117)
T ss_dssp             TTBSSEEEEECTTSCSBT-TBCCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CCCcCEEEEcccCCCCcc-CCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            369999999999999875 6889999999997754         44334799999 689999999875  5566777788


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..++|.|.|..
T Consensus       104 ~~v~l~v~R~~  114 (117)
T 2byg_A          104 EVVYLKVGKPT  114 (117)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CeEEEEEEeCC
Confidence            88999998853

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.92  E-value=2.5e-09  Score=84.83  Aligned_cols=78  Identities=15%  Similarity=0.120  Sum_probs=63.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||++.||.|.|+.. ++.++||++|.+||.|         +..+.|++||+ +.||+..+.+.+  .++.+++..+
T Consensus        14 ~~glG~~i~~g~~~~~~~-~~~gv~V~~V~~~spA---------~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   83 (102)
T 2i1n_A           14 NSGLGFSIAGGIDNPHVP-DDPGIFITKIIPGGAA---------AMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAG   83 (102)
T ss_dssp             TTBTSEEEEECTTSCSST-TCCCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CCcCCEEEEcccCCCCcC-CCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            569999999999999875 6899999999997654         43333799999 689999999865  4556677788


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|..
T Consensus        84 ~~v~l~v~R~~   94 (102)
T 2i1n_A           84 PVVRLVVRRRQ   94 (102)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            89999998854

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.91  E-value=1.7e-09  Score=89.25  Aligned_cols=62  Identities=29%  Similarity=0.384  Sum_probs=58.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+..
T Consensus        51 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~  112 (124)
T 2daz_A           51 MSIFVVGINPE---GPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNED  112 (124)
T ss_dssp             CCEEEEEECTT---SHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEEEECTT
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            47999999999   999999999999999999999999999999999999999999999999754

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.91  E-value=1.9e-09  Score=84.78  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=56.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+|+...+.+.|+|.|+.
T Consensus        37 ~g~~V~~V~~~---spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           37 TGIFIKGIVPD---SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD   97 (98)
T ss_dssp             EEEEEEEECTT---SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC-
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence            47999999999   99988888999999999999999999999999999999999999999974

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.91  E-value=5.3e-10  Score=90.38  Aligned_cols=64  Identities=23%  Similarity=0.334  Sum_probs=59.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++|+..+|+.+.+.+.|+|.|...+.
T Consensus        44 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~  107 (111)
T 1uju_A           44 EGIFISKVSPT---GAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESG  107 (111)
T ss_dssp             CCCEEEEECTT---SHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCCCS
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCC
Confidence            47999999999   99999999999999999999999999999999999999999999999986543

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.91  E-value=2.1e-09  Score=82.47  Aligned_cols=59  Identities=19%  Similarity=0.287  Sum_probs=54.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R  281 (333)
                      .++||.++.++   ++|++.|+|++||+|++|||+++.+++++++.++|+.+  .+.+.|+|.|
T Consensus        25 ~~~~V~~v~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           25 EFLQIKSLVLD---GPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             BCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            36999999999   89988888999999999999999999999999999988  5789999876

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.91  E-value=4e-09  Score=85.69  Aligned_cols=63  Identities=17%  Similarity=0.200  Sum_probs=57.9

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      +++|.+|.++   ++|++++.|++||+|++|||+.+.+++++|+.++|+...+.+.|+|.|+....
T Consensus        44 ~~~V~~V~~~---spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~  106 (114)
T 1uew_A           44 PHKIGRIIDG---SPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELN  106 (114)
T ss_dssp             SCEEEEECTT---CTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSCCC
T ss_pred             CeEEEEECCC---ChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcCC
Confidence            6799999999   99988778999999999999999999999999999998899999999976543

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.90  E-value=1.8e-09  Score=86.62  Aligned_cols=62  Identities=19%  Similarity=0.404  Sum_probs=57.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.+++++++..+|+...+.+.|+|.|+..
T Consensus        44 ~gv~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           44 TGIYVKSLIPG---SAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLP  105 (108)
T ss_dssp             CCCEEEEECTT---SHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEEEEECCC
T ss_pred             CCEEEEEeCCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            47999999999   899888889999999999999999999999999999988999999998764

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.90  E-value=3.2e-09  Score=81.88  Aligned_cols=60  Identities=25%  Similarity=0.399  Sum_probs=55.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+++.++++.++..+++...+.+.|+|.|+.
T Consensus        27 ~~~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g   86 (88)
T 2uzc_A           27 MPLTISSLKDG---GKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRES   86 (88)
T ss_dssp             EEEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCeEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            46999999999   8888887 999999999999999999999999999988899999999875

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.90  E-value=2.2e-09  Score=87.12  Aligned_cols=65  Identities=26%  Similarity=0.335  Sum_probs=59.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+.+.+++++++..+|+...+.|.|+|.|+.....
T Consensus        43 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~  107 (116)
T 2dm8_A           43 NAIVIHEVYEE---GAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYR  107 (116)
T ss_dssp             SSEECCCCCSS---SHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCSSCCC
T ss_pred             CCEEEEEECCC---ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Confidence            37999999999   899988899999999999999999999999999999988999999999765433

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.90  E-value=2.1e-09  Score=85.95  Aligned_cols=80  Identities=13%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||.+.||.+.++|..++.++||++|.|||.         |+..+.|++||+ +.||+.++.+.+  ..+.+++..
T Consensus        16 ~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~sp---------A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   86 (105)
T 1wha_A           16 SERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGA---------AHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA   86 (105)
T ss_dssp             CTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSS---------HHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred             CCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCH---------HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            35689999999999887766789999999999764         444333799999 589999999864  555667767


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      +..+.|.|.|..
T Consensus        87 g~~v~l~v~R~~   98 (105)
T 1wha_A           87 SPTIALLLEREA   98 (105)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCeEEEEEEECC
Confidence            888999998843

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.90  E-value=2.4e-09  Score=88.75  Aligned_cols=63  Identities=16%  Similarity=0.298  Sum_probs=59.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++++.++|+...+.+.|+|.|+...
T Consensus        46 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           46 SGIYVKSVIPG---SAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             CEEEEEEECTT---SHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEEEEEESSS
T ss_pred             CCEEEEEeCCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            57999999999   9999999999999999999999999999999999999889999999998653

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.90  E-value=2e-09  Score=88.80  Aligned_cols=61  Identities=18%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++++..+|+.+.+.+.|+|.|..
T Consensus        45 ~~~~V~~v~~g---spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~  105 (125)
T 3hpk_A           45 PCLYIVQVFDN---TPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ  105 (125)
T ss_dssp             SSEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEEC
T ss_pred             CCEEEEEeCCC---CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            46999999999   99999999999999999999999999999999999999999999998843

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.89  E-value=2.4e-09  Score=87.52  Aligned_cols=61  Identities=21%  Similarity=0.256  Sum_probs=56.1

Q ss_pred             eEEEEEEccCcccCccccC-CCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CceEEEEeccCC
Q psy9829         221 KIFVKEVTHRLDNNASAGT-HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK----EKLSLTIRREVP  284 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~d-g~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~----~~v~L~V~R~~~  284 (333)
                      ++||.+|.++   ++|++. |.|++||+|++|||+++.++++.++..+|+.+.    ..+.|+|.|+..
T Consensus        42 ~v~V~~V~~~---spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           42 PVIVSRVAPG---TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             EEEEEEECSS---STTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred             CeEEEEECCC---CHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence            6999999999   898887 789999999999999999999999999999985    489999999753

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.89  E-value=6.7e-09  Score=81.35  Aligned_cols=75  Identities=13%  Similarity=0.075  Sum_probs=60.8

Q ss_pred             cceeeEEEecccC---CCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          87 GSTFVGSVLGARG---ALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        87 G~~~g~~i~gg~d---~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      +.+|||.|.||.+   +|+. +.+.+++|++|.|||         ||+.  +|++||+ +.||+.++.+.+  .++.+++
T Consensus        12 ~~~lG~~i~gg~~~~~~p~~-~~~~gv~V~~V~~~s---------pA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (95)
T 1mfg_A           12 DPELGFSISGGVGGRGNPFR-PDDDGIFVTRVQPEG---------PASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK   79 (95)
T ss_dssp             SSSCSEEEEECBTSCCCSSS-TTCCCEEEEEECTTS---------TTTT--TCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             CCCCCEEEeCCcCccCCccc-cCCCCEEEEEECCCC---------chhh--CCCCCCEEEEECCEEcCCCCHHHHHHHhh
Confidence            4589999999885   6765 468899999999976         5555  5899999 589999999875  4455667


Q ss_pred             hcCCceEEEEEEe
Q psy9829         161 IAHNCISAQIKRT  173 (333)
Q Consensus       161 ~~g~~v~L~v~R~  173 (333)
                      ..+..+.|.|.|.
T Consensus        80 ~~~~~v~l~v~R~   92 (95)
T 1mfg_A           80 TFQNTVELIIVRE   92 (95)
T ss_dssp             HCCSEEEEEEEEE
T ss_pred             cCCCeEEEEEEeC
Confidence            7788899999885

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.89  E-value=9.1e-10  Score=99.11  Aligned_cols=86  Identities=13%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             CcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCcchhhHHHHHhhc
Q psy9829           3 EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRV   82 (333)
Q Consensus         3 ~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~raer~   82 (333)
                      |......++++|+.++|++++++||+||||++.+++++++...++|++|||.|||.+       +.+|+.+.+..|.+++
T Consensus        87 e~~~~~~n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~-------~~~e~~~~i~~r~~~~  159 (197)
T 3ney_A           87 EFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG-------TQTEALQQLQKDSEAI  159 (197)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS-------SCCHHHHHHHHHHHHH
T ss_pred             hhhhhhceecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc-------ccchHHHHHHHHHHHH
Confidence            334455678899999999999999999999999999999999999999999999974       4556666777777666


Q ss_pred             cccccceeeEEEe
Q psy9829          83 LFPVGSTFVGSVL   95 (333)
Q Consensus        83 ~qE~G~~~g~~i~   95 (333)
                      ..+....|...|.
T Consensus       160 ~~~~~~~fd~viv  172 (197)
T 3ney_A          160 RSQYAHYFDLSLV  172 (197)
T ss_dssp             HHHHGGGCSEEEE
T ss_pred             HHhhccCCCEEEE
Confidence            5454444555554

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.89  E-value=4.6e-09  Score=82.30  Aligned_cols=59  Identities=25%  Similarity=0.365  Sum_probs=55.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||.+|.++   ++|++  .|++||+|++|||+++.++++.++..+++...+.+.|+|.|+.
T Consensus        35 ~gv~V~~V~~~---spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           35 DGIFVTRVQPE---GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV   93 (95)
T ss_dssp             CCEEEEEECTT---STTTT--TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred             CCEEEEEECCC---Cchhh--CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEEEeCC
Confidence            47999999999   88888  7999999999999999999999999999999999999999975

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.88  E-value=2.5e-09  Score=87.40  Aligned_cols=66  Identities=17%  Similarity=0.299  Sum_probs=57.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceE-EEEeccCCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS-LTIRREVPRPTA  288 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~-L~V~R~~~~~~~  288 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+|+.+.+.+. |+|.|+....+.
T Consensus        42 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~~~  108 (119)
T 1x6d_A           42 KVITVHRVFPN---GLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAM  108 (119)
T ss_dssp             SSCEEEEECSS---SHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCCSSSC
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCCccch
Confidence            46999999999   9999999999999999999999999999999999999877655 778887655443

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.88  E-value=2.3e-09  Score=88.52  Aligned_cols=76  Identities=14%  Similarity=0.193  Sum_probs=63.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||+|.||.+.+.   .+.++||++|.|||.|         +..++|++||+ +.||++++.+++  .++.+++.++
T Consensus        35 ~~~lGf~i~gg~~~~~---~~~gv~V~~V~~gspA---------~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~  102 (118)
T 3b76_A           35 GESLGMTVAGGASHRE---WDLPIYVISVEPGGVI---------SRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTS  102 (118)
T ss_dssp             TCCCCEEEEECSCSTT---CCCCEEEEEECTTSHH---------HHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCC
T ss_pred             CCccCEEEecCCCCCC---CCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            5799999999998765   5789999999997754         44444799999 689999999875  6677888888


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..++|.|.|..
T Consensus       103 ~~v~L~v~R~~  113 (118)
T 3b76_A          103 SSIVLKALEVK  113 (118)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CeEEEEEEECC
Confidence            89999998865

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.88  E-value=2.4e-09  Score=84.96  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      ++||.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+.
T Consensus        36 gv~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~   95 (104)
T 3i4w_A           36 GIFISFILAG---GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP   95 (104)
T ss_dssp             CEEEEEECTT---SHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred             CEEEEEECCC---ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECc
Confidence            7999999999   99999889999999999999999999999999999999999999998863

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.87  E-value=4.8e-09  Score=84.44  Aligned_cols=63  Identities=29%  Similarity=0.408  Sum_probs=57.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.+++++++.++|+.+  .+.+.|+|.|+...
T Consensus        39 ~g~~V~~V~~~---spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           39 APIYVKNILPR---GAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             SCEEEEEECSS---SHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred             cCEEEEEECCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence            47999999999   89988888999999999999999999999999999986  67899999997643

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.87  E-value=4e-09  Score=83.04  Aligned_cols=59  Identities=22%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+++.+++++|+.++|+.+.+.+.|+|.|.
T Consensus        37 ~~~~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~   95 (96)
T 2ego_A           37 MVTFVARVHES---SPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYG   95 (96)
T ss_dssp             EEEEEEEECTT---CHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEECC
T ss_pred             CCeEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            47999999999   8888887 99999999999999999999999999999988999998764

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.87  E-value=3.4e-09  Score=84.75  Aligned_cols=63  Identities=19%  Similarity=0.312  Sum_probs=57.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .++||.+|.++   ++|++.| |++||+|++|||+.+.+++++++.++|+. .+.+.|+|.|...+++
T Consensus        41 ~g~~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v~r~~~~~s  103 (104)
T 1wi2_A           41 LGIFISKVIPD---SDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSGPSS  103 (104)
T ss_dssp             CCCEEEEECTT---SHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEEEECCCCSCC
T ss_pred             CCEEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEEEEECCCCCC
Confidence            46999999999   8888776 99999999999999999999999999999 7899999999876553

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.87  E-value=4.2e-09  Score=81.75  Aligned_cols=59  Identities=27%  Similarity=0.308  Sum_probs=54.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++..+++...+.+.|+|.|+
T Consensus        32 ~gv~V~~V~~~---spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   90 (91)
T 1m5z_A           32 KGVYVKNIRPA---GPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            47999999999   8888777 99999999999999999999999999999889999999886

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.87  E-value=2.7e-09  Score=81.63  Aligned_cols=60  Identities=22%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.++.++   ++|++.| |++||+|++|||+++.+++++++.++|+.+.+.+.|+|.|+.
T Consensus        23 ~~~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   82 (83)
T 2kv8_A           23 APCVLSCVMRG---SPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGV   82 (83)
T ss_dssp             SSCBCCBCCTT---STTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEECCC
T ss_pred             CCeEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCC
Confidence            46899999999   8888777 999999999999999999999999999988889999999864

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.87  E-value=4.4e-09  Score=82.56  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=56.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++..+|+...+.+.|+|.|+...
T Consensus        30 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~   91 (96)
T 2v90_A           30 PGQFLWEVDPG---LPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD   91 (96)
T ss_dssp             EEEEEEEECTT---SHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCCTT
T ss_pred             CCeEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCCCc
Confidence            37999999999   8888877 99999999999999999999999999999888999999997643

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.86  E-value=2.7e-09  Score=85.52  Aligned_cols=60  Identities=23%  Similarity=0.296  Sum_probs=55.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.+++++|+.++|+.+.+.+.|+|.+.
T Consensus        36 ~gv~V~~V~~g---spA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~   95 (97)
T 2ejy_A           36 QSCTVARILHG---GMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPN   95 (97)
T ss_dssp             CCEEEEEECSS---SHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEEECC
T ss_pred             CCEEEEEeCCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            47999999999   9999999999999999999999999999999999999888999998653

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.86  E-value=4.5e-09  Score=85.35  Aligned_cols=61  Identities=21%  Similarity=0.376  Sum_probs=57.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+.
T Consensus        49 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~  109 (112)
T 2r4h_A           49 MDLYVLRLAED---GPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGE  109 (112)
T ss_dssp             CCEEEEEECTT---SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCE
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            47999999999   99999888999999999999999999999999999998899999998864

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.86  E-value=6.4e-09  Score=87.31  Aligned_cols=62  Identities=13%  Similarity=0.214  Sum_probs=57.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.| |++||+|++|||+++.++++++++.+|+.+.+.+.|+|.|....
T Consensus        65 ~gv~V~~V~~g---spA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~~~  126 (132)
T 3l4f_D           65 ALQYLESVDEG---GVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH  126 (132)
T ss_dssp             CSEEEEEECTT---SGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCCC-
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            36999999999   9998888 99999999999999999999999999999999999999887543

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.85  E-value=5e-09  Score=87.44  Aligned_cols=76  Identities=17%  Similarity=0.302  Sum_probs=61.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.|.||.+.|+   ++.+|||++|.|||.         |+..++|++||+ +.||++++.+++  .++++|+.++
T Consensus        39 ~~glG~~i~gg~~~~~---~~~~i~I~~V~~gs~---------A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  106 (130)
T 1i16_A           39 SAGLGFSLEGGKGSLH---GDKPLTINRIFKGAA---------SEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP  106 (130)
T ss_dssp             SSSTTEEEECCCCCSS---SCCCCEEEEECSSCC---------CSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred             CCccCEEEecCcCCCC---CCCCEEEEEECCCCH---------HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            5699999999999988   467899999999764         555446799999 589999999974  5667777765


Q ss_pred             C-ceEEEEEEee
Q psy9829         164 N-CISAQIKRTH  174 (333)
Q Consensus       164 ~-~v~L~v~R~~  174 (333)
                      . .+.|+|+|..
T Consensus       107 ~~~v~l~v~r~~  118 (130)
T 1i16_A          107 DGPVTIVIRRKS  118 (130)
T ss_dssp             SSEEEEEEEEES
T ss_pred             CceEEEEEEeCC
Confidence            4 5999998864

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.85  E-value=4.3e-09  Score=83.75  Aligned_cols=60  Identities=25%  Similarity=0.361  Sum_probs=55.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++  .|++||+|++|||+++.++++.++..+++.+.+.+.|+|.|+..
T Consensus        43 ~gv~V~~V~~~---spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~  102 (103)
T 1n7t_A           43 DGIFVTRVQPE---GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVS  102 (103)
T ss_dssp             CSEECCCBSSS---STTSS--SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEECCCC
T ss_pred             CCEEEEEECCC---CchHH--CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEEEecCC
Confidence            47999999999   88888  79999999999999999999999999999999999999999753

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.85  E-value=8.5e-09  Score=85.28  Aligned_cols=60  Identities=17%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPRP  286 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~~  286 (333)
                      +.||++|.+.      +.++.|++||+|++|||+++++++|.|++++|+.+  .+.|.|+|.|+....
T Consensus        35 g~~V~~I~~~------~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~   96 (113)
T 3soe_A           35 GQKVKMILDS------QWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPS   96 (113)
T ss_dssp             EEEEEEESCG------GGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred             CcEEEEecCh------HHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCccC
Confidence            5779999884      45679999999999999999999999999999997  458999999987543

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.85  E-value=2.5e-09  Score=84.79  Aligned_cols=62  Identities=21%  Similarity=0.385  Sum_probs=57.7

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      +++|.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++...+.+.|+|.|+...
T Consensus        37 ~~~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   98 (103)
T 1wfv_A           37 DLYVLRLAED---GPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS   98 (103)
T ss_dssp             EEECCCBCTT---SHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTCS
T ss_pred             CEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            7999999999   8998888899999999999999999999999999998889999999997643

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.84  E-value=5.1e-09  Score=81.22  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=56.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+++.+++|+++.++|+.+.+.+.|+|.|...
T Consensus        28 ~gv~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~   88 (90)
T 2he4_A           28 PGQYIRSVDPG---SPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST   88 (90)
T ss_dssp             SSEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCC
T ss_pred             CCEEEEEECCC---ChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCC
Confidence            36999999999   8888877 9999999999999999999999999999998999999998753

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.83  E-value=8.3e-09  Score=79.53  Aligned_cols=60  Identities=30%  Similarity=0.472  Sum_probs=55.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++. .|++||+|++|||+++.+++++++.++|+.+.+.+.|+|.|+.
T Consensus        26 ~g~~V~~V~~~---spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   85 (87)
T 2pa1_A           26 TPIMVTKVAER---GKAKDA-DLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT   85 (87)
T ss_dssp             EEEEEEEECSS---SHHHHT-TCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred             CCEEEEEECCC---ChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence            37999999999   887765 4999999999999999999999999999999899999999975

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=6.4e-09  Score=82.51  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=56.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+++.+++++++.++|+.+.+.+.|+|.|...
T Consensus        39 ~g~~V~~V~~~---spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           39 RGIFIKHVLED---SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             --EEEEEECSS---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCEEEEEeCCC---CcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence            47999999999   999988889999999999999999999999999999998899999988653

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=5.4e-09  Score=81.48  Aligned_cols=62  Identities=23%  Similarity=0.333  Sum_probs=55.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++.++|+...+.+.|+|.|..+.
T Consensus        24 ~~~~V~~V~~~---spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~   85 (91)
T 2f5y_A           24 SPVRVQAVDSG---GPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQ   85 (91)
T ss_dssp             SSCEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEECC--
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            46899999999   8888777 99999999999999999999999999999888999999997643

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.83  E-value=3.8e-09  Score=84.50  Aligned_cols=78  Identities=13%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||+|.||.|.+..+ .+.+++|++|.|||.|         +..++|++||+ +.||+.++.+.+  .+..+++..+
T Consensus        13 ~~glG~~i~gg~~~~~~~-~~~gv~V~~V~~~spA---------~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (105)
T 2awx_A           13 PKGLGFSIAGGVGNQHIP-GDNSIYVTKIIEGGAA---------HKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS   82 (105)
T ss_dssp             TTBSSEEEEECBTSCSBT-TBCCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCC
T ss_pred             CCCCCEEEeCccCCCCCC-CCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            459999999999998864 6889999999997754         44334799999 589999998875  4455666678


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|..
T Consensus        83 ~~v~l~v~R~~   93 (105)
T 2awx_A           83 DFVYLKVAKPT   93 (105)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEcCC
Confidence            88999998843

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.83  E-value=5.1e-09  Score=104.71  Aligned_cols=157  Identities=12%  Similarity=0.104  Sum_probs=97.2

Q ss_pred             CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEeeccCCCC-CCC
Q psy9829         108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNYDQP-EKG  183 (333)
Q Consensus       108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~~~p-~~~  183 (333)
                      .|++|++|.|||.|         +. .+|++||+ +.+|+..+.+......++..  .+..++|.|.|......-. ...
T Consensus       282 ~G~~V~~V~~~spA---------~~-aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~  351 (451)
T 3pv2_A          282 QGALVSQVNPNSPA---------EL-AGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVT  351 (451)
T ss_dssp             CCEEEEEECTTSHH---------HH-HTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECB
T ss_pred             ceEEEEecCCCChH---------HH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence            79999999997754         43 34799999 58999999887654455543  5678999998832110000 000


Q ss_pred             CCCCCCCceeEEeeecCCCccccccc-e-eecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCH
Q psy9829         184 EMSFRKGDVFHVIDTLHNGVVGSWQV-F-RIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSV  261 (333)
Q Consensus       184 ~l~~~~g~~~hv~~sl~~~~lG~~~~-~-~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~  261 (333)
                      .+.   .... ..........|.... . ..........+++|.++.++   ++|++.| |++||+|++|||+.+.  +.
T Consensus       352 ~~~---~~~~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~Gv~V~~V~~g---spA~~aG-L~~GD~I~~Vng~~v~--~~  421 (451)
T 3pv2_A          352 DIK---SHEQ-KLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASEN---SAGWRAG-IRPGDIIISANKKPVT--DV  421 (451)
T ss_dssp             CHH---HHHH-HHHHHSTTTTTEEEEEEEEECTTSCEEEEEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECC--SH
T ss_pred             cCC---cccc-ccccccccccccccccCChhHhcccCCCceEEEEECCC---CHHHHcC-CCCCCEEEEECCEECC--CH
Confidence            000   0000 000000000000000 0 00000011247999999999   8887776 9999999999999876  46


Q ss_pred             HHHHHHHHhcCCceEEEEeccCC
Q psy9829         262 KEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       262 ~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      +|..++|+.....+.|.|.|+..
T Consensus       422 ~~~~~~l~~~~~~v~l~v~R~g~  444 (451)
T 3pv2_A          422 KSLQTIAQEKKKELLVQVLRGPG  444 (451)
T ss_dssp             HHHHHHTTSSCSCEEEEEEETTE
T ss_pred             HHHHHHHhcCCCeEEEEEEECCE
Confidence            89999999988899999999753

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.82  E-value=8.1e-09  Score=82.84  Aligned_cols=80  Identities=13%  Similarity=0.072  Sum_probs=62.4

Q ss_pred             cceeeEEEecccCCC--CCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          87 GSTFVGSVLGARGAL--DLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        87 G~~~g~~i~gg~d~p--~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+|||.|.||.+..  .+...+.++||++|.+||.|         +...+|++||+ +.||++++.+.+  .++.+++.
T Consensus        18 ~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA---------~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~   88 (107)
T 1uhp_A           18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPA---------AKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT   88 (107)
T ss_dssp             SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHH---------HHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            679999999999763  22235789999999997754         44335799999 689999998875  45567777


Q ss_pred             cCCceEEEEEEeec
Q psy9829         162 AHNCISAQIKRTHF  175 (333)
Q Consensus       162 ~g~~v~L~v~R~~~  175 (333)
                      .+..+.|.|.|+.+
T Consensus        89 ~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           89 AKEPIVVQVLRRTS  102 (107)
T ss_dssp             CCSSEEEEEEECCS
T ss_pred             CCCcEEEEEEeCCC
Confidence            88899999988553

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=5.9e-09  Score=81.72  Aligned_cols=60  Identities=18%  Similarity=0.359  Sum_probs=56.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.|.|++||+|++|||+++ +++++|+.++|+...+.+.|+|.|..
T Consensus        29 ~~v~V~~V~~~---spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~~~~   88 (91)
T 2e7k_A           29 GELVIARILHG---GMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSGP   88 (91)
T ss_dssp             SSEEEEEECSS---SHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEEECCS
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            57999999999   99999889999999999999999 99999999999999999999998764

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.82  E-value=1.3e-08  Score=95.45  Aligned_cols=62  Identities=18%  Similarity=0.265  Sum_probs=58.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++++.|++||+|++|||+++.+++|+|++.+|+.+.+.|.|+|.|...
T Consensus       103 ~gi~V~~V~~g---spA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~~~  164 (263)
T 1z87_A          103 MPILISKIFKG---LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKE  164 (263)
T ss_dssp             EEEEEEECCTT---SHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECCSS
T ss_pred             CCEEEEEECCC---CHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeCcc
Confidence            47999999999   999998899999999999999999999999999999999999999999643

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.81  E-value=8.5e-09  Score=83.83  Aligned_cols=63  Identities=21%  Similarity=0.333  Sum_probs=58.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|-|++||+|++|||+.+.+++++++.++|+...+.+.|+|.|....
T Consensus        48 ~gv~V~~V~~~---spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~  110 (113)
T 1va8_A           48 DSVIISRIVKG---GAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP  110 (113)
T ss_dssp             SSEEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECCCCC
T ss_pred             CCEEEEEeCCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            57999999999   9998888679999999999999999999999999999999999999987654

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.81  E-value=1e-08  Score=79.62  Aligned_cols=62  Identities=27%  Similarity=0.376  Sum_probs=56.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+++.++++.++..+|+...+.+.|+|.|+...
T Consensus        27 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~   88 (91)
T 2pkt_A           27 QPLAISRVTPG---SKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHE   88 (91)
T ss_dssp             EEEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEECCC
T ss_pred             CCeEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            47999999999   8888776 99999999999999999999999999999889999999998654

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.81  E-value=6.6e-09  Score=79.49  Aligned_cols=60  Identities=30%  Similarity=0.429  Sum_probs=54.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++- .|++||+|++|||+++.++++.++..+++...+.+.|+|.|+.
T Consensus        25 ~~v~V~~V~~~---spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   84 (85)
T 1rgw_A           25 MPLTISRITPG---SKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             SCCBEEEECTT---SHHHHS-SCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             CCeEEEEECCC---CHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            36899999999   877764 5999999999999999999999999999988889999998864

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=83.24  Aligned_cols=80  Identities=11%  Similarity=0.066  Sum_probs=63.0

Q ss_pred             cceeeEEEecccCCCCC---CCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          87 GSTFVGSVLGARGALDL---ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~---~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      +.+|||.|.||.+.++.   ...+.++||++|.+||         ||+..++|++||+ +.||+.++.+.+  .++.+++
T Consensus        26 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~s---------pA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~   96 (117)
T 2ehr_A           26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDS---------PAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIK   96 (117)
T ss_dssp             SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSS---------TTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHH
T ss_pred             CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCC---------hHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57999999999998632   2246899999999976         4555444799999 589999998875  4556777


Q ss_pred             hcCCceEEEEEEeec
Q psy9829         161 IAHNCISAQIKRTHF  175 (333)
Q Consensus       161 ~~g~~v~L~v~R~~~  175 (333)
                      ..+..++|.|.|...
T Consensus        97 ~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           97 NAGNPVVFIVQSLSS  111 (117)
T ss_dssp             TSCSSEEEEECCBSC
T ss_pred             cCCCeEEEEEEECCC
Confidence            788899999988553

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=1.2e-08  Score=83.65  Aligned_cols=81  Identities=12%  Similarity=0.094  Sum_probs=65.4

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.|.||.+.|+.. .+.+++|++|.+||.|         +..++|++||+ +.||+.++.+++  ..+.+++..+
T Consensus        27 ~~~lG~~i~~~~~~~~~~-~~~gv~V~~V~~~spA---------~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g   96 (120)
T 2eno_A           27 PSGLGFNIVGGTDQQYVS-NDSGIYVSRIKENGAA---------ALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG   96 (120)
T ss_dssp             SSSCSEEEECCTTTCSSS-SCCSEEEEEECSSSHH---------HHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHC
T ss_pred             CCCCCEEEecccCCcccc-CCCCEEEEEECCCChH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            469999999999998764 6889999999997754         43333799999 589999999986  5566777778


Q ss_pred             CceEEEEEEeeccC
Q psy9829         164 NCISAQIKRTHFNY  177 (333)
Q Consensus       164 ~~v~L~v~R~~~~~  177 (333)
                      ..++|.|.|.....
T Consensus        97 ~~v~l~v~R~~~~~  110 (120)
T 2eno_A           97 YAVSLRVQHRLQVQ  110 (120)
T ss_dssp             SEEEEEEEEEEECC
T ss_pred             CeEEEEEEeCCcCC
Confidence            88999999866543

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.80  E-value=1.2e-08  Score=84.00  Aligned_cols=63  Identities=24%  Similarity=0.375  Sum_probs=57.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.|.|++||+|++|||+.+.+++++|+.++|+..  .+.+.|+|.|+...
T Consensus        45 ~~~~V~~V~~~---spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           45 SPPLISYIEAD---SPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             SCCEEEEECTT---SHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred             CCcEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence            35899999999   99998888999999999999999999999999999998  57999999998754

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=8.1e-09  Score=81.61  Aligned_cols=59  Identities=27%  Similarity=0.429  Sum_probs=55.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||.+|.++   ++|  ++.|++||+|++|||+.+.++++.++..+++...+.+.|+|.|+.
T Consensus        31 ~~~~V~~V~~~---spA--~agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   89 (96)
T 2edv_A           31 LPLTVVAVTAG---GSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT   89 (96)
T ss_dssp             SSCBCCCBCSS---SSS--TTTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred             CCeEEEEECCC---Cch--hhCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            47999999999   777  389999999999999999999999999999999999999999987

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.79  E-value=6.5e-09  Score=81.01  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||++.||.+.++.+ .+.+++|++|.|||.|         +..+.|++||+ +.||+..+.+.+  ....+++..+
T Consensus        13 ~~g~G~~i~gg~~~~~~~-~~~gv~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (94)
T 2fe5_A           13 PKGLGFSIAGGIGNQHIP-GDNSIYITKIIEGGAA---------QKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS   82 (94)
T ss_dssp             TTCSCEEEEECBTSCSBT-TBCCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC
T ss_pred             CCCCCEEEEcccCCCCCC-CCCCEEEEEECCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            568999999999998875 6889999999998754         43333799999 589999999874  4455666677


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..++|.|.|
T Consensus        83 ~~v~l~v~R   91 (94)
T 2fe5_A           83 DMVYLKVAK   91 (94)
T ss_dssp             SEEEEEEEC
T ss_pred             CeEEEEEEc
Confidence            789999977

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.79  E-value=3.2e-09  Score=86.90  Aligned_cols=77  Identities=5%  Similarity=-0.041  Sum_probs=63.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||+|.||.+.|.. +++.++||++|.|||.|         +..++|++||+ +.||++++.+++  .++.+++.++
T Consensus        29 ~~glG~~i~g~~~~~~~-~~~~g~~V~~v~~~s~A---------~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~   98 (117)
T 1ujd_A           29 GNGLGIRIVGGKEIPGH-SGEIGAYIAKILPGGSA---------EQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS   98 (117)
T ss_dssp             CCSCSEEEEEEEECSSS-SSCEEEEEEEECTTCHH---------HHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCS
T ss_pred             CCcccEEEeCCCCCCcc-cCCcCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence            57999999999999875 46889999999997754         44334799999 589999999874  5566777788


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|+|.
T Consensus        99 ~~v~l~v~R~  108 (117)
T 1ujd_A           99 GEAEICVRLD  108 (117)
T ss_dssp             SCEEEEEESS
T ss_pred             CEEEEEEEEC
Confidence            8899999884

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.79  E-value=1.2e-08  Score=81.21  Aligned_cols=75  Identities=13%  Similarity=0.075  Sum_probs=60.8

Q ss_pred             cceeeEEEecccC---CCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          87 GSTFVGSVLGARG---ALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        87 G~~~g~~i~gg~d---~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      +.+|||.+.||.+   +|+. ..+.+++|++|.|||         ||+.  +|++||+ +.||+..+.+.+  .++.+++
T Consensus        20 ~~~lG~~i~gg~~~~~~p~~-~~~~gv~V~~V~~~s---------pA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~   87 (103)
T 1n7t_A           20 DPELGFSISGGVGGRGNPFR-PDDDGIFVTRVQPEG---------PASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK   87 (103)
T ss_dssp             SSCCCBEEEECTTSSBCSSC-SSCCSEECCCBSSSS---------TTSS--SCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCCccEEEEcccCCCCCccc-cCCCCEEEEEECCCC---------chHH--CCCCCCEEEEECCEECCCCCHHHHHHHhh
Confidence            4589999999885   6665 368899999999976         5565  5899999 589999999875  4556677


Q ss_pred             hcCCceEEEEEEe
Q psy9829         161 IAHNCISAQIKRT  173 (333)
Q Consensus       161 ~~g~~v~L~v~R~  173 (333)
                      ..+..++|.|.|.
T Consensus        88 ~~g~~v~l~v~R~  100 (103)
T 1n7t_A           88 TFQNTVELIIVRE  100 (103)
T ss_dssp             HCCSEEEEEEECC
T ss_pred             cCCCeEEEEEEec
Confidence            7788899999884

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.78  E-value=1.4e-08  Score=78.75  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=53.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .++||.+|.++   ++|++.| |++||+|++|||+++.++++.++..+|+.+.+.+.+.+.|.
T Consensus        27 ~g~~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r   85 (91)
T 1g9o_A           27 LGQYIRLVEPG---SPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP   85 (91)
T ss_dssp             SSEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred             CCEEEEEECCC---CHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcC
Confidence            47999999999   8888887 99999999999999999999999999999888877776554

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.78  E-value=1.9e-08  Score=78.71  Aligned_cols=62  Identities=27%  Similarity=0.341  Sum_probs=55.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++...++ ..+.+.|+|.|+...+
T Consensus        29 ~g~~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~v~R~~~~~   90 (93)
T 2dls_A           29 RIVLVQSVRPG---GAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSSGP   90 (93)
T ss_dssp             SSCEEEEECSS---STTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEEEECCCCCS
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEEEEECCCCC
Confidence            47999999999   8888777 9999999999999999999999999988 5889999999986543

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.78  E-value=1.1e-08  Score=84.98  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=57.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.+++++|+.++|+.+.+.+.|+|.|...
T Consensus        59 ~gv~V~~V~~~---spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A           59 RGIFIKHVLED---SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             CSEEEEEECSS---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            47999999999   999988889999999999999999999999999999999999999988653

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.77  E-value=8.1e-09  Score=81.23  Aligned_cols=64  Identities=8%  Similarity=0.196  Sum_probs=55.8

Q ss_pred             cccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       213 d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      .+|+.+..+ +|.+|.++   ++|++.| |++||+|++|||+++.++++.++.++|+.+.+.+.|+|.+
T Consensus        25 ~lG~~~~~G-~V~~V~~~---spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p   88 (90)
T 1y7n_A           25 QLGFSVQNG-IICSLMRG---GIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP   88 (90)
T ss_dssp             CCCEEEETT-EEEEECTT---SHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             ccCeEecCC-EEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            345544345 89999999   8888887 9999999999999999999999999999988999999865

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=98.77  E-value=5.2e-09  Score=81.45  Aligned_cols=61  Identities=20%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+++.+++++|+.++|+.+.+.+.|+|.|...
T Consensus        27 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   87 (91)
T 2vsp_A           27 PGSFIKEVQKG---GPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKA   87 (91)
T ss_dssp             SCCBC-CCCTT---SHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC---
T ss_pred             CCeEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCc
Confidence            36899999999   8888877 9999999999999999999999999999998899999998753

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.77  E-value=1.9e-08  Score=79.85  Aligned_cols=61  Identities=10%  Similarity=0.277  Sum_probs=55.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++..+|+.+.+.+.|+|.|+..
T Consensus        30 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   90 (102)
T 2d90_A           30 KGQIIKDIEPG---SPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEA   90 (102)
T ss_dssp             SSEEEECCCTT---STTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEECSTTC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            46999999999   8887776 9999999999999999999999999999989999999988653

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1.6e-08  Score=80.10  Aligned_cols=63  Identities=24%  Similarity=0.397  Sum_probs=56.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++..+++. .+.+.|+|.|+...+.
T Consensus        36 ~gv~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~p~   98 (100)
T 2eeh_A           36 LGIFVSKVEEG---SSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMMVRRMGSGPS   98 (100)
T ss_dssp             CCEEEEEECTT---SHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEEEEECSCCCC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEEEEECCcCCC
Confidence            47999999999   8888777 99999999999999999999999999998 7899999999876543

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.77  E-value=1.2e-08  Score=84.06  Aligned_cols=61  Identities=30%  Similarity=0.413  Sum_probs=56.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.+++++++.++|+.+  .+.+.|+|.|+.
T Consensus        58 ~gv~V~~V~~g---spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A           58 APIYVKNILPR---GAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             CCEEEEEECTT---SHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence            46999999999   89988888999999999999999999999999999986  578999998864

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1.2e-08  Score=79.93  Aligned_cols=61  Identities=23%  Similarity=0.329  Sum_probs=55.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++..+++...+.+.|+|.|+..
T Consensus        32 ~~v~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~   92 (94)
T 2eeg_A           32 APLTISRVHAG---SKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS   92 (94)
T ss_dssp             SCCEECCCCSS---SHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEECCSS
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            46899999999   8888776 9999999999999999999999999999988899999998753

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.76  E-value=1.2e-08  Score=85.62  Aligned_cols=60  Identities=22%  Similarity=0.336  Sum_probs=56.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~  282 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.+++++|++++|+..  .+.|.|+|.|+
T Consensus        49 ~~v~V~~V~~g---spA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           49 PYLQISHLINK---GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             TEEEECCCCTT---SSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CcEEEEEECCC---CHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            46999999999   99999999999999999999999999999999999984  57899999998

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.76  E-value=1.9e-08  Score=88.10  Aligned_cols=75  Identities=13%  Similarity=0.071  Sum_probs=61.5

Q ss_pred             ceeeEEEecccC---CCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          88 STFVGSVLGARG---ALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        88 ~~~g~~i~gg~d---~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      .||||+|.||.|   .|+.. .+.++||++|.|||         ||+.  +||+||+ +.||+.++.++.  .++.+++.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~-~~~g~~V~~v~~~s---------pA~~--gl~~GD~I~~vng~~v~~~~~~~~~~~~~~   69 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRP-DDDGIFVTRVQPEG---------PASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT   69 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCT-TCCSEEEEEECTTS---------TTTT--TCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CcccEEEECCcCCCCCcccc-CCCCEEEEEECCCC---------hHHh--CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            589999999874   67654 68999999999976         5565  5899999 589999999985  55667777


Q ss_pred             cCCceEEEEEEee
Q psy9829         162 AHNCISAQIKRTH  174 (333)
Q Consensus       162 ~g~~v~L~v~R~~  174 (333)
                      .+..+.|.|.|+.
T Consensus        70 ~~~~v~l~v~r~~   82 (195)
T 2qbw_A           70 FQNTVELIIVREV   82 (195)
T ss_dssp             CCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEEcC
Confidence            8889999998843

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.76  E-value=1e-08  Score=80.33  Aligned_cols=63  Identities=29%  Similarity=0.432  Sum_probs=56.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .+++|.+|.++   ++|++- .|++||+|++|||+.+.+++++++.++|+...+.+.|+|.|+....
T Consensus        30 ~g~~V~~V~~~---spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~~   92 (94)
T 1vb7_A           30 TPIIVTKVTER---GKAEAA-DLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGPS   92 (94)
T ss_dssp             EEEECCCBCTT---SSHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCCC
T ss_pred             CCeEEEEECCC---CHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCcCC
Confidence            37999999999   777754 4999999999999999999999999999998899999999986543

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.76  E-value=8.2e-09  Score=84.21  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|+  +.|++||+|++|||+++.++++.++..+|+.+.+.+.|+|.|...
T Consensus        46 ~gv~V~~V~~~---spA~--~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~  105 (117)
T 2csj_A           46 TSIVISDVLPG---GPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRK  105 (117)
T ss_dssp             CBCEEEEECTT---SSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEE
T ss_pred             CCEEEEEECCC---Cccc--ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEECCc
Confidence            46999999999   7774  789999999999999999999999999999999999999999753

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.76  E-value=1.1e-08  Score=79.65  Aligned_cols=61  Identities=21%  Similarity=0.391  Sum_probs=56.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+++.++++.++..+++...+.+.|+|.|+.
T Consensus        33 ~~~~V~~v~~~---s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~g   93 (97)
T 2iwn_A           33 SGIFVKSITKS---SAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG   93 (97)
T ss_dssp             CCCEEEEECTT---CHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred             CCEEEEEeCCC---ChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            47999999999   88888888999999999999999999999999999998899999998875

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.75  E-value=1.1e-08  Score=81.48  Aligned_cols=61  Identities=23%  Similarity=0.413  Sum_probs=56.2

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      +++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++..+++...+.+.|+|.|+...
T Consensus        30 ~v~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~   90 (103)
T 1wf7_A           30 PLTISSLKDG---GKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA   90 (103)
T ss_dssp             EEEECCCCTT---CHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCC
T ss_pred             CEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Confidence            5899999999   8888887 99999999999999999999999999999989999999997653

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.75  E-value=1.8e-08  Score=81.01  Aligned_cols=63  Identities=22%  Similarity=0.362  Sum_probs=57.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++...++...+.+.|+|.|+....
T Consensus        46 ~g~~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~  108 (110)
T 1x5q_A           46 EGIFISRVSEE---GPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPS  108 (110)
T ss_dssp             CSEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSSCC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCccC
Confidence            57999999999   8888877 999999999999999999999999999998999999999987543

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.75  E-value=7.9e-09  Score=82.14  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=57.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++.++|+...+.+.|+|.|+..+.+
T Consensus        36 ~~~~V~~V~~~---spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~s~   99 (100)
T 1whd_A           36 SPVRVQAVDSG---GPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGPSS   99 (100)
T ss_dssp             SSCBCCBCCTT---SHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEECCSSCC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCCC
Confidence            46899999999   8887765 9999999999999999999999999999988889999999875543

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.75  E-value=8.7e-09  Score=80.44  Aligned_cols=60  Identities=10%  Similarity=0.262  Sum_probs=55.3

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      ++||..|.++   ++|++.| |++||+|++|||+.+.+++|+++..+|+.+.+.+.+++.|...
T Consensus        30 ~~~V~~v~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~   89 (95)
T 3r68_A           30 GQIIKDIEPG---SPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEL   89 (95)
T ss_dssp             SEEEECCCTT---SHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC-
T ss_pred             CEEEEEECCC---CHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECCcc
Confidence            7999999999   8888887 9999999999999999999999999999999999998877653

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.74  E-value=9.3e-09  Score=86.11  Aligned_cols=78  Identities=14%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      +.+.+|||.|.||.+.+.   ++.++||++|.|||.|         +..++|++||+ +.||++++.+++  .++.+|+.
T Consensus        45 ~~~~~lG~~i~gg~~~~~---~~~gv~V~~V~~gspA---------~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~  112 (131)
T 1wfg_A           45 DSGAMLGLKVVGGKMTES---GRLCAFITKVKKGSLA---------DTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILE  112 (131)
T ss_dssp             CSCTTTTEEEEEEEECSS---SCEEEEEEEECTTSHH---------HHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCCCCCCEEEecCccCCC---CCCCEEEEEECCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            346799999999999875   6889999999997754         54444799999 689999999874  55667777


Q ss_pred             cC--CceEEEEEEee
Q psy9829         162 AH--NCISAQIKRTH  174 (333)
Q Consensus       162 ~g--~~v~L~v~R~~  174 (333)
                      +.  ..++|+|.|..
T Consensus       113 ~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A          113 SKPEPQVELVVSRSG  127 (131)
T ss_dssp             TSSSSEEEEEEEEEC
T ss_pred             cCCCCEEEEEEEcCC
Confidence            54  78999998854

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.73  E-value=2.4e-08  Score=78.21  Aligned_cols=62  Identities=23%  Similarity=0.370  Sum_probs=56.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++...++...+.+.|+|.|+...
T Consensus        34 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~   95 (97)
T 2w4f_A           34 EGIFISRVSEE---GPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET   95 (97)
T ss_dssp             CSEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred             CCEEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence            57999999999   8888877 99999999999999999999999999988899999999998643

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.73  E-value=1.9e-08  Score=79.61  Aligned_cols=78  Identities=13%  Similarity=0.126  Sum_probs=62.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.||.+.++.. .+.+++|++|.+||.|         +..+.|++||+ +.||+..+.+.+  ....+++..+
T Consensus        17 ~~~lG~~l~~g~~~~~~~-~~~gv~V~~V~~~spA---------~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   86 (101)
T 2jik_A           17 PSGLGFNIVGGTDQQYVS-NDSGIYVSRIKENGAA---------ALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG   86 (101)
T ss_dssp             TTCCCEEEEECTTSCSBT-TBCCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCC
T ss_pred             CCCCCEEEeccccCCCcc-CCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            469999999999998764 6789999999998755         43223799999 589999999874  4445666678


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..++|.|.|..
T Consensus        87 ~~v~l~v~R~~   97 (101)
T 2jik_A           87 YAVSLRVQHRL   97 (101)
T ss_dssp             SEEEEEEEEES
T ss_pred             CeEEEEEEeCC
Confidence            88999998853

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=3.9e-09  Score=87.41  Aligned_cols=62  Identities=26%  Similarity=0.401  Sum_probs=57.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+++.++++++++++|+.+.+.+.|+|.|....
T Consensus        61 ~gv~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  122 (126)
T 2yuy_A           61 DTIFVKQVKEG---GPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSG  122 (126)
T ss_dssp             CCCCBCCCCSS---SHHHHHT-CCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCCC
T ss_pred             CCEEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            46999999999   8888887 99999999999999999999999999999999999999987654

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.73  E-value=2.1e-08  Score=80.68  Aligned_cols=63  Identities=14%  Similarity=0.250  Sum_probs=56.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .++||..|.++   ++|++.| |++||+|++|||+.+.+++|+++..+|+.+.+.+.|+|.|..+.+
T Consensus        45 ~gv~V~~V~~~---spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~p  107 (109)
T 1q3o_A           45 ALQYLESVDEG---GVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP  107 (109)
T ss_dssp             SSEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEEECC-
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECCCCC
Confidence            36999999999   8888887 999999999999999999999999999998899999998876543

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=9.4e-09  Score=81.69  Aligned_cols=61  Identities=30%  Similarity=0.394  Sum_probs=56.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.|.|++||+|++|||+++.++ +.++..+++.+.+.+.|+|.|+..
T Consensus        35 ~~v~V~~V~~~---spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~   95 (100)
T 2edp_A           35 EPLTVSKIEDG---GKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNS   95 (100)
T ss_dssp             EEEEECCCCTT---SHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCC
T ss_pred             CCeEEEEECCC---CHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCC
Confidence            36999999999   99988888999999999999999887 899999999998999999999864

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.72  E-value=4.8e-09  Score=86.60  Aligned_cols=75  Identities=16%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.|.||.+.+.   .+.++||++|.|||.|         +...+|++||+ +.||+.++.+++  .++.+++.++
T Consensus        35 ~~~lGf~i~gg~~~~~---~~~~~~V~~V~~~spA---------~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  102 (120)
T 2iwo_A           35 TDSLGISIAGGVGSPL---GDVPIFIAMMHPTGVA---------AQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS  102 (120)
T ss_dssp             --CCCEEEEEEEEETT---EEEEEEEEEECTTSHH---------HHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred             CCCCCEEEecccCCCC---CCCCEEEEEECCCCHH---------HHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3599999999999886   4689999999997754         44335799999 689999999975  5566778888


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|.|.
T Consensus       103 ~~v~l~v~r~  112 (120)
T 2iwo_A          103 GSIEMQVVAG  112 (120)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEEC
Confidence            8899999873

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.72  E-value=9.4e-09  Score=80.82  Aligned_cols=78  Identities=9%  Similarity=-0.054  Sum_probs=63.3

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||+|.||.+.++....+.+++|++|.|||.|         +..+.|++||+ +.||+..+++.+  ....+++..
T Consensus        15 ~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA---------~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   85 (98)
T 1ihj_A           15 GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPA---------HLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   85 (98)
T ss_dssp             TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHH---------HHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CCCCcCEEEeccccCCccccCCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            467999999999998875446789999999997754         44323799999 589999999983  456677778


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..++|.|.|
T Consensus        86 g~~v~l~v~R   95 (98)
T 1ihj_A           86 DFKIELEIQT   95 (98)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCeEEEEEEe
Confidence            8899999988

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.72  E-value=2.6e-08  Score=78.54  Aligned_cols=60  Identities=22%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      +++|.++.++   ++|++.| |++||+|++|||+.+.+++++++..+|+...+.+.|+|.|...
T Consensus        35 g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   94 (99)
T 3khf_A           35 HHVVWSVEDG---SPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECSCS
T ss_pred             CeEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEECCC
Confidence            6899999999   8888777 9999999999999999999999999999999999999998754

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.72  E-value=1.5e-08  Score=80.80  Aligned_cols=60  Identities=17%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||..|.++   ++|++.| |++||+|++|||+++.++++.++..+|+.+.+.+.|+|.|+.
T Consensus        26 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~   85 (106)
T 3ngh_A           26 DGHLIRVIEEG---SPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGD   85 (106)
T ss_dssp             CSCEEECCCTT---SHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEECHH
T ss_pred             CCEEEEEeCCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECC
Confidence            36899999999   8888877 999999999999999999999999999999999999999864

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.71  E-value=7.4e-09  Score=86.17  Aligned_cols=78  Identities=17%  Similarity=0.076  Sum_probs=63.1

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...||||.|.|+.+...  +.+.+|||++|.+||         ||+..++|++||+ +.||++++.+++  .++.+|+.+
T Consensus        35 ~~~glG~~i~~~~~~~~--~~~~gi~V~~V~~gs---------pA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  103 (127)
T 1wg6_A           35 GSAGLGVSLKGNKSRET--GTDLGIFIKSIIHGG---------AAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS  103 (127)
T ss_dssp             TTTCCCCEEEEEEETTT--TEEEEEEEEECCSSS---------STHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred             CCCccCeEEecccCCCC--CCCCCEEEEEECCCC---------HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            35799999999998743  357899999999976         4555445799999 589999999986  677788865


Q ss_pred             -------CCceEEEEEEee
Q psy9829         163 -------HNCISAQIKRTH  174 (333)
Q Consensus       163 -------g~~v~L~v~R~~  174 (333)
                             +..|+|.|.|..
T Consensus       104 ~~~~g~~~~~v~l~v~R~~  122 (127)
T 1wg6_A          104 MSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHHHHTCEEEEEEEECS
T ss_pred             hccccCCCCEEEEEEEeCC
Confidence                   778999998854

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.71  E-value=1.4e-08  Score=84.12  Aligned_cols=76  Identities=11%  Similarity=0.066  Sum_probs=61.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeecc-Ccc--hhhhhhhhc
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHN-GVV--GSWQVFRIA  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~-gv~--~a~~alr~~  162 (333)
                      ..+|||.|.||.+...   ++.++||++|.+||.|         +..++|++||+ +.||++++. +++  .++.+++..
T Consensus        36 ~~~lG~~i~g~~~~~~---~~~gv~V~~V~~~spA---------~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~  103 (128)
T 2db5_A           36 TGGLGFSVVALRSQNL---GKVDIFVKDVQPGSVA---------DRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT  103 (128)
T ss_dssp             SSCCCCEEEEEECSSS---SCEEEEEECCCTTSHH---------HHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC
T ss_pred             CCccCEEEecccCCCC---CCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            3699999999998865   5789999999997654         44334799999 589999997 765  556677778


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      +..++|.|.|..
T Consensus       104 ~~~v~l~v~r~~  115 (128)
T 2db5_A          104 TGSLRLIVAREP  115 (128)
T ss_dssp             CSEEEEEEEECC
T ss_pred             CCeEEEEEEcCC
Confidence            889999998853

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.71  E-value=1.5e-08  Score=81.25  Aligned_cols=77  Identities=16%  Similarity=0.040  Sum_probs=60.4

Q ss_pred             cceeeEEEec---ccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          87 GSTFVGSVLG---ARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        87 G~~~g~~i~g---g~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      ..+|||.|.|   |.+.+.   .+.++||++|.|||.|         +..++|++||+ +.||+.++.+++  .++.+++
T Consensus        19 ~~glG~~i~~~~~g~~~~~---~~~gv~V~~V~~~spA---------~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   86 (107)
T 1wf8_A           19 EDGLGISIIGMGVGADAGL---EKLGIFVKTVTEGGAA---------QRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   86 (107)
T ss_dssp             TTBSCEEEEEEEESCCTTC---CEEEEEEEEECTTCHH---------HHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             CCcccEEEEecCCCCCCCC---CCCCEEEEEeCCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            5699999999   555443   5789999999997754         44434799999 589999999875  4456677


Q ss_pred             hcCCceEEEEEEeec
Q psy9829         161 IAHNCISAQIKRTHF  175 (333)
Q Consensus       161 ~~g~~v~L~v~R~~~  175 (333)
                      ..+..++|.|.|...
T Consensus        87 ~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           87 NTKGNVRFVIGREKP  101 (107)
T ss_dssp             HCCSEEEEEEEEECC
T ss_pred             cCCCeEEEEEEeCCC
Confidence            788899999998653

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.71  E-value=2.2e-08  Score=86.87  Aligned_cols=63  Identities=19%  Similarity=0.276  Sum_probs=59.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.|+   ++|++.|+|++||+|++|||+++.++++.++..+++...+.+.|+|.|+.+.
T Consensus        35 ~g~~V~~V~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~   97 (196)
T 3gsl_A           35 PSIFITKIIPG---GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP   97 (196)
T ss_dssp             CCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEECCC
T ss_pred             CCEEEEEECCC---ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCC
Confidence            47999999999   9999999999999999999999999999999999999999999999997644

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.71  E-value=2.3e-08  Score=81.17  Aligned_cols=60  Identities=17%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++.++|+...+.+.|+|.|+.
T Consensus        38 ~g~~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~   97 (114)
T 2edz_A           38 DGHLIRVIEEG---SPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGD   97 (114)
T ss_dssp             CSCEEECCCTT---CTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEEECHH
T ss_pred             CCeEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            47999999999   8888777 999999999999999999999999999998899999999864

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.70  E-value=1.6e-08  Score=88.71  Aligned_cols=76  Identities=18%  Similarity=0.086  Sum_probs=60.8

Q ss_pred             cceeeEEEec-ccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          87 GSTFVGSVLG-ARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        87 G~~~g~~i~g-g~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ..||||.|.| |.+.+.- ..+.+|||++|.+||.|         +..++|++||+ +.||++++.+++  .++.+|+.+
T Consensus        90 ~~glG~~i~g~~~g~~~~-~~~~gi~V~~V~~gspA---------~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~  159 (170)
T 3egg_C           90 SEGLGISIIGMGAGADMG-LEKLGIFVKTVTEGGAA---------HRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT  159 (170)
T ss_dssp             TTBSSEEEEEECSSSSCC-SSSBEEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHC
T ss_pred             CCeEeEEEEecccCCccc-cCCCCEEEEEECCCChH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4699999999 4444432 36889999999997754         44445799999 689999999885  567788888


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..|+|+|+|
T Consensus       160 g~~v~L~V~R  169 (170)
T 3egg_C          160 KGRVRFMIGR  169 (170)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            9999999988

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.70  E-value=1.6e-08  Score=79.24  Aligned_cols=77  Identities=17%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcch--hhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVG--SWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~--a~~alr~~g  163 (333)
                      ..||||+|.||.+.+++.+.+.+++|++|.|||.|         +.. +|++||+ +.+|+..+++...  ...+++..+
T Consensus        13 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   82 (97)
T 2w4f_A           13 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPA---------ARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAG   82 (97)
T ss_dssp             TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCceeEEEECCccCCcccCCCCCEEEEEECCCChH---------HHc-CCCCCCEEEEECCEECCCcCHHHHHHHHhCCC
Confidence            56999999999999888777899999999997754         432 3799999 6899999999863  334455578


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        83 ~~v~l~v~R~   92 (97)
T 2w4f_A           83 TAVQMRVWRE   92 (97)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEeC
Confidence            8899999883

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.8e-08  Score=80.45  Aligned_cols=61  Identities=11%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.| |++||+|++|||+++.++++.++..+++.+.+.+.|+|.|...
T Consensus        32 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~   92 (106)
T 2eei_A           32 KGVYMTDITPQ---GVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKET   92 (106)
T ss_dssp             CSCEECCCCTT---SHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEEECCTTT
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCch
Confidence            46999999999   8888877 9999999999999999999999999999999999999988754

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.69  E-value=3.6e-08  Score=86.36  Aligned_cols=57  Identities=23%  Similarity=0.337  Sum_probs=54.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      .++||.+|.++   ++|++  .|++||+|++|||+++.+++|.++..+++.+.+.+.|+|.|
T Consensus        24 ~g~~V~~v~~~---spA~~--gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A           24 DGIFVTRVQPE---GPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             CSEEEEEECTT---STTTT--TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCEEEEEECCC---ChHHh--CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            57999999999   99988  69999999999999999999999999999999999999999

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.69  E-value=6.4e-08  Score=76.57  Aligned_cols=59  Identities=25%  Similarity=0.367  Sum_probs=51.9

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  285 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~  285 (333)
                      ++||.++.++     | ..+.|++||+|++|||+++.+++|+|++++|+.+  .+.+.|+|.|+...
T Consensus        33 Gv~V~~v~~~-----a-~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~~   93 (96)
T 1ujv_A           33 GQRVKQILDI-----Q-GCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP   93 (96)
T ss_dssp             EEEEEEESCG-----G-GSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSSC
T ss_pred             CEEEEEEecc-----c-ccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCCC
Confidence            6999999984     2 3568999999999999999999999999999996  57899999998654

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.69  E-value=8.2e-09  Score=84.81  Aligned_cols=75  Identities=12%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||++.||.+.|.   ++.+++|++|.|||.         |+..++|++||+ +.||+.++.+.+  ..+.+++..+
T Consensus        35 ~~glGf~l~~g~~~~~---~~~gv~V~~V~~~sp---------A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  102 (117)
T 2fne_A           35 PDGLGFSIVGGYGSPH---GDLPIYVKTVFAKGA---------ASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK  102 (117)
T ss_dssp             TTBTSEEEEEEEEETT---EEEEEEEEEECTTSH---------HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCcccEEEecccCCCC---CCCCEEEEEECCCCh---------HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4699999999999875   578999999999765         444334799999 589999999764  5566777777


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|.|.
T Consensus       103 ~~v~l~v~R~  112 (117)
T 2fne_A          103 GTVTLMVLSS  112 (117)
T ss_dssp             SSEEEEEEEC
T ss_pred             CeEEEEEEeC
Confidence            8899999883

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.68  E-value=2.5e-08  Score=81.27  Aligned_cols=61  Identities=15%  Similarity=0.244  Sum_probs=56.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.|.|++||+|++|||+.+.++++.++..+++...+.+.|+|.|..
T Consensus        38 ~gv~V~~V~~~---spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~   98 (119)
T 1tp5_A           38 EGIFISFILAG---GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP   98 (119)
T ss_dssp             CCEEEEEECTT---SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            47999999999   88888888999999999999999999999999999999999999998864

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.68  E-value=2.8e-08  Score=87.71  Aligned_cols=63  Identities=24%  Similarity=0.306  Sum_probs=59.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCC--CCHHHHHHHHHhcCCc-eEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDG--MSVKEARKLIDSSKEK-LSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~--~s~~eA~~~l~~s~~~-v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|+.||+|++|||+.+.+  +++.++..+++.+.+. +.|+|.|+...
T Consensus        45 ~g~~V~~V~~~---spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~  110 (206)
T 3r0h_A           45 TGCVITHVYPE---GQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPP  110 (206)
T ss_dssp             SCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSC
T ss_pred             CCeEEEEECCC---ChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccC
Confidence            47999999999   9999999999999999999999999  9999999999999998 99999997654

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.68  E-value=1.9e-08  Score=80.86  Aligned_cols=61  Identities=15%  Similarity=0.236  Sum_probs=56.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+.+.++++.++..+++...+.+.|+|.|+.
T Consensus        39 ~gv~V~~V~~~---s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~   99 (113)
T 1um7_A           39 EGIFVSFILAG---GPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP   99 (113)
T ss_dssp             CCCBCCCBCSS---SHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEEEECCH
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECc
Confidence            47999999999   89988888999999999999999999999999999998999999998864

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.67  E-value=2.6e-08  Score=88.18  Aligned_cols=60  Identities=18%  Similarity=0.319  Sum_probs=56.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||.+|.++   ++|++.| |++||+|++|||.++.+++++++..+|+. .+.+.|+|.|...
T Consensus       110 ~~~~V~~V~~g---spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~v~r~g~  169 (192)
T 3k1r_A          110 CGLFISHLIKG---GQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIKVRHIGL  169 (192)
T ss_dssp             EEEEEEEECTT---SHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEEEEECCE
T ss_pred             CCEEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEEEEECCc
Confidence            47999999999   9999998 99999999999999999999999999999 8999999999765

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.66  E-value=1.6e-08  Score=81.39  Aligned_cols=76  Identities=9%  Similarity=-0.049  Sum_probs=59.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.|.||.+ |.. ..+.++||++|.|||+|         +..++|++||+ +.||+.++.+.+  .++.+++.. 
T Consensus        25 ~~glG~~i~~~~~-~~~-~~~~g~~V~~v~~~spA---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (108)
T 2d92_A           25 CKGLGFSILDYQD-PLD-PTRSVIVIRSLVADGVA---------ERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP   93 (108)
T ss_dssp             SSCCSEEEEEEEC-SSC-TTCEEEEEEEECTTCHH---------HHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC
T ss_pred             CCccCEEEecccc-cCC-CCCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            5699999999988 332 36899999999997654         44334799999 689999998865  566677774 


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..++|+|.|.
T Consensus        94 ~~~v~l~v~R~  104 (108)
T 2d92_A           94 PGLVHLGICSG  104 (108)
T ss_dssp             SEEEEEEEECC
T ss_pred             CCeEEEEEEcC
Confidence            56899999873

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.66  E-value=2.1e-08  Score=80.95  Aligned_cols=75  Identities=16%  Similarity=0.129  Sum_probs=59.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      +.+|||+|.||.+.+    .+.++||++|.|||.|         +..++|++||+ +.||+.++.+++  .++.+|+.+ 
T Consensus        16 ~~~lG~~i~g~~~~~----~~~gv~V~~V~~~spA---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   82 (108)
T 3cbz_A           16 YNFLGISIVGQSNER----GDGGIYIGSIMKGGAV---------AADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIV   82 (108)
T ss_dssp             HCCCCEEEEEECSST----TCCEEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHH
T ss_pred             CCccCEEEEcCcCCC----CCCCEEEEEECCCChH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            468999999998742    4789999999997754         44444799999 589999999964  566777766 


Q ss_pred             --CCceEEEEEEee
Q psy9829         163 --HNCISAQIKRTH  174 (333)
Q Consensus       163 --g~~v~L~v~R~~  174 (333)
                        +..++|.|.|..
T Consensus        83 ~~~~~v~l~v~R~~   96 (108)
T 3cbz_A           83 HKPGPIVLTVAKSG   96 (108)
T ss_dssp             TSSSCEEEEEECCC
T ss_pred             cCCCeEEEEEEeCC
Confidence              457999998853

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.66  E-value=1.8e-08  Score=80.54  Aligned_cols=77  Identities=13%  Similarity=0.112  Sum_probs=61.5

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ....+|||+|.||.+.+.   .+.++||++|.|||.|         +..++|++||+ +.||+..+.+.+  .++.+++.
T Consensus        18 ~~~~glG~~i~~~~~~~~---~~~gv~V~~V~~~spA---------~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~   85 (106)
T 3axa_A           18 KKQNGMGLSIVAAKGAGQ---DKLGIYVKSVVKGGAA---------DVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR   85 (106)
T ss_dssp             ECSSSCSEEEEEEECSSC---SSEEEEEEEEBTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CCCCccCEEEEeecCCCC---CCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            346799999999998765   4789999999997754         44334799999 589999999865  44556667


Q ss_pred             cCCceEEEEEEe
Q psy9829         162 AHNCISAQIKRT  173 (333)
Q Consensus       162 ~g~~v~L~v~R~  173 (333)
                      .+..+.|.|.|.
T Consensus        86 ~g~~v~l~v~R~   97 (106)
T 3axa_A           86 TSSVVTLEVAKQ   97 (106)
T ss_dssp             CCSEEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            888899999884

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.66  E-value=3.7e-08  Score=80.53  Aligned_cols=59  Identities=19%  Similarity=0.319  Sum_probs=54.8

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      +++|.+|.++   ++|++.|+|++||+|++|||+++.+.+++++.++|+.+.+.+.|+|.+.
T Consensus        51 ~~~V~~V~~g---spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~  109 (114)
T 2gzv_A           51 CLYIVQVFDN---TPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL  109 (114)
T ss_dssp             CEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECC
T ss_pred             CEEEEEECCC---ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            6999999999   8998888899999999999999999999999999999888899998654

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.66  E-value=1.5e-08  Score=80.84  Aligned_cols=56  Identities=27%  Similarity=0.375  Sum_probs=51.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++|+.++|+.+.+.+.|+|
T Consensus        48 ~~~~V~~V~~~---spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v  103 (104)
T 2z17_A           48 MFTLICKIQED---SPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET  103 (104)
T ss_dssp             CCEEEEEECTT---SHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEEEEC
T ss_pred             CCeEEEEECCC---ChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Confidence            47999999999   8888877 99999999999999999999999999999988888875

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.65  E-value=3.7e-08  Score=81.78  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=54.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++..+|+.  ..+.+.|+|.|+.
T Consensus        51 ~gv~V~~V~~g---spA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  112 (124)
T 3tsv_A           51 VGIFVAGVLED---SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK  112 (124)
T ss_dssp             SCEEEEEECTT---CHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            47999999999   8888877 99999999999999999999999998884  6678999998864

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.64  E-value=3e-08  Score=77.97  Aligned_cols=59  Identities=17%  Similarity=0.290  Sum_probs=52.4

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCc-eEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK-LSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~-v~L~V~R~~  283 (333)
                      +++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++.++|+.+... +.|+|.|+.
T Consensus        34 g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g   93 (98)
T 2jxo_A           34 GQFIRSVDPD---SPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET   93 (98)
T ss_dssp             CEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHH
T ss_pred             CEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCc
Confidence            7999999999   8888877 999999999999999999999999999998654 558888763

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.64  E-value=5.8e-08  Score=78.98  Aligned_cols=63  Identities=21%  Similarity=0.265  Sum_probs=56.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .++||.+|.++   ++|++.| |++||+|++|||+.+.++++.++..+++...+.+.|+|.|+....
T Consensus        42 ~gv~V~~V~~~---spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~  104 (117)
T 1uit_A           42 GGIYVSKVTVG---SIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVH  104 (117)
T ss_dssp             SCEEEEEECTT---SHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCCC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCchh
Confidence            47999999999   8888877 999999999999999999999999888888899999999976543

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.63  E-value=1.3e-08  Score=101.72  Aligned_cols=149  Identities=17%  Similarity=0.193  Sum_probs=43.7

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCEE-EEceeeccCcchhhhhhhh--cCCceEEEEEEeeccCCCCCCC
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNYDQPEKG  183 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I-~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~~~p~~~  183 (333)
                      +.+++|++|.+||.         |+. .+|++||+| .+|+..+++......+++.  .+..++|.|.|......-.-. 
T Consensus       285 ~~G~~V~~V~~gsp---------A~~-AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~-  353 (448)
T 1ky9_A          285 QRGAFVSQVLPNSS---------AAK-AGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLE-  353 (448)
T ss_dssp             CCSEECCCCTTCSS---------STT-TTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC-
T ss_pred             CCceEEEEeccCCH---------HHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE-
Confidence            46999999999764         444 358999995 8999998887544455543  467799999773211000000 


Q ss_pred             CCCCCCCceeEEeeecCCCccccccceeecccccc-----cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCC
Q psy9829         184 EMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL-----GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDG  258 (333)
Q Consensus       184 ~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l-----~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~  258 (333)
                       +......  ...         .......-+|+.+     ..+++|.+|.++   ++|++.| |++||+|++|||+.+. 
T Consensus       354 -~~~~~~~--~~~---------~~~~~~~~~G~~l~~~~~~~gv~V~~V~~g---spA~~aG-L~~GDiI~~vng~~v~-  416 (448)
T 1ky9_A          354 -LQQSSQN--QVD---------SSSIFNGIEGAEMSNKGKDQGVVVNNVKTG---TPAAQIG-LKKGDVIIGANQQAVK-  416 (448)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -EecCCCc--ccc---------cccccccccceEeeccCCCCeEEEEEecCC---CHHHHcC-CCCCCEEEEECCEECC-
Confidence             0000000  000         0000001123322     247899999999   7777665 9999999999998876 


Q ss_pred             CCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         259 MSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       259 ~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                       +++|..++|+...+.+.|.|.|+..
T Consensus       417 -~~~~l~~~l~~~~~~v~l~v~R~g~  441 (448)
T 1ky9_A          417 -NIAELRKVLDSKPSVLALNIQRGDS  441 (448)
T ss_dssp             --------------------------
T ss_pred             -CHHHHHHHHHcCCCeEEEEEEECCE
Confidence             5788889998877789999998754

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.63  E-value=5.1e-08  Score=77.37  Aligned_cols=59  Identities=22%  Similarity=0.362  Sum_probs=53.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~  282 (333)
                      .++||.+|.++   ++|++.| |++||+|++|||+++.+++++++..+|+.. .+.+.|+|.|.
T Consensus        45 ~gv~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           45 KGIYVTRVSEG---GPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             CSEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CCEEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            57999999999   8888887 999999999999999999999999999864 46899999874

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.63  E-value=3e-08  Score=77.71  Aligned_cols=77  Identities=17%  Similarity=0.116  Sum_probs=60.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g  163 (333)
                      +.+|||.+.||.+.+.  +.+.+++|++|.|||.|         +..++|++||+ +.+|+..+.+.  .....+++..+
T Consensus        13 ~~~lG~~i~~~~~~~~--~~~~~~~V~~V~~~spA---------~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   81 (97)
T 2jil_A           13 GNTFGFVIRGGAHDDR--NKSRPVVITSVRPGGPA---------DREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG   81 (97)
T ss_dssp             TTBCSEEEEEECCSCC----CEEEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CCccCEEEeCcccCCC--CCCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            5699999999999875  35789999999997754         44333799999 68999999994  35566777778


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|..
T Consensus        82 ~~v~l~v~R~~   92 (97)
T 2jil_A           82 QEAALLIEYDV   92 (97)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            88999998843

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.63  E-value=3.1e-08  Score=78.97  Aligned_cols=61  Identities=26%  Similarity=0.442  Sum_probs=55.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++.++|+...+.+.|+|.|+..
T Consensus        29 ~~~~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~   89 (103)
T 1v5l_A           29 QPLVITRITPG---SKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             EEEECSCBCTT---STTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             CCeEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCe
Confidence            36899999999   7777754 9999999999999999999999999999998899999999764

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.63  E-value=3.9e-08  Score=78.77  Aligned_cols=76  Identities=12%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             cceeeEEEe-----cccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhh
Q psy9829          87 GSTFVGSVL-----GARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQV  158 (333)
Q Consensus        87 G~~~g~~i~-----gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~a  158 (333)
                      +.+|||.|.     ||.+.+.   .+.++||++|.+||.         |+..++|++||+ +.||+..+.+.+  .++.+
T Consensus        19 ~~~lG~~i~~~~~~gg~~~~~---~~~gv~V~~V~~~sp---------A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A           19 DNSLGISVTVLFDKGGVNTSV---RHGGIYVKAVIPQGA---------AESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SCSCCEEESSSSSSBCBCTTS---SSCCCBEEEECTTST---------HHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             CCCccEEEEEeccCCCccccC---CCCCEEEEEECCCCh---------HHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            569999999     9999875   578999999999765         444334799999 589999999764  55667


Q ss_pred             hhhcCCceEEEEEEee
Q psy9829         159 FRIAHNCISAQIKRTH  174 (333)
Q Consensus       159 lr~~g~~v~L~v~R~~  174 (333)
                      ++..+..+.|.|.|..
T Consensus        87 ~~~~g~~v~l~v~R~~  102 (108)
T 1q7x_A           87 LRNTGQVVHLLLEKGQ  102 (108)
T ss_dssp             HHHTTSEEEEEEECCC
T ss_pred             HHcCCCeEEEEEEeCC
Confidence            7778889999998843

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.63  E-value=1.2e-07  Score=75.65  Aligned_cols=61  Identities=23%  Similarity=0.282  Sum_probs=55.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|+  +.|++||+|++|||+++.++++.++...++...+.+.|+|.|+...
T Consensus        39 ~gv~V~~V~~~---spA~--agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           39 TSIVISDVLKG---GPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             CCEEEEEECTT---STTB--TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred             CCEEEEEECCC---Cchh--hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence            47999999999   7776  6899999999999999999999999999998889999999997643

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.62  E-value=3.6e-08  Score=78.92  Aligned_cols=78  Identities=21%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||.+.|+.+.++.+ .+.+++|++|.|||.|         +..++|++||+ +.||+..+.+.+  ..+.+++..
T Consensus        23 ~~~~lG~~~~~~~~~~~~~-~~~gv~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   92 (108)
T 2jre_A           23 DTSSLGISISGMRDQSTTG-EATGIYVKSLIPGSAA---------ALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNA   92 (108)
T ss_dssp             TTSCCSEEEECCCCCSCSS-CCCCCEEEEECTTSHH---------HHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred             CCCCcCEEEEcccCCCCCC-CCCCEEEEEeCCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3569999999999998874 6789999999997754         43333799999 589999999863  455666767


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|.
T Consensus        93 g~~v~l~v~R~  103 (108)
T 2jre_A           93 GNPVRLLLIRR  103 (108)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEeC
Confidence            88899999884

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.62  E-value=5.4e-08  Score=82.38  Aligned_cols=63  Identities=21%  Similarity=0.326  Sum_probs=55.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~~~~  286 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++..+|+.. .+.+.|+|.|+....
T Consensus        64 ~gv~V~~V~~~---spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~  127 (139)
T 2vz5_A           64 KGIYVTRVSEG---GPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQK  127 (139)
T ss_dssp             CCEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC---
T ss_pred             CCEEEEEECCC---CHHHHCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence            58999999999   8888887 999999999999999999999999999984 468999999986543

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.61  E-value=4.5e-08  Score=78.68  Aligned_cols=75  Identities=12%  Similarity=0.054  Sum_probs=59.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.+.||.+.+.   ++.+++|++|.|||.|         +..++|++||+ +.||+..+.+.+  .+..+++..+
T Consensus        18 ~~glG~~l~~g~~~~~---~~~gv~V~~V~~~spA---------~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   85 (110)
T 1um1_A           18 PSGLGMGLIDGMHTHL---GAPGLYIQTLLPGSPA---------AADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             TTCCCEEEEETTTSTT---CCSSEEEEEECTTSHH---------HHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CCccCEEEeCCcCCCC---CCCCEEEEEECCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4699999999998776   5789999999997754         44333799999 589999998864  4445666678


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        86 ~~v~l~v~R~   95 (110)
T 1um1_A           86 KKMRFLVAKS   95 (110)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEeC
Confidence            8899999884

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.61  E-value=5.3e-08  Score=76.15  Aligned_cols=75  Identities=12%  Similarity=0.089  Sum_probs=59.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.+.||.+.+.   .+.+++|++|.+||.|         +..++|++||+ +.||+.++.+.+  ....+++..+
T Consensus        15 ~~~lG~~i~~g~~~~~---~~~g~~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   82 (96)
T 1d5g_A           15 DNSLGISVTGGVNTSV---RHGGIYVKAVIPQGAA---------ESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG   82 (96)
T ss_dssp             SSSCCEEEECCSSSCS---SSSCCEEEEECTTSHH---------HHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CCCCCEEEECCCCCCC---CcCCEEEEEeCCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4699999999988765   4689999999998755         33333799999 589999999774  4455666678


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        83 ~~v~l~v~R~   92 (96)
T 1d5g_A           83 QVVHLLLEKG   92 (96)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEcC
Confidence            8899999773

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.60  E-value=5.4e-08  Score=78.22  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=61.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.|.||++.+++.+.+.+++|++|.|||.|         +.. +|++||+ +.||++.+++..  ....+++..+
T Consensus        25 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA---------~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   94 (110)
T 1x5q_A           25 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPA---------ARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAG   94 (110)
T ss_dssp             SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CCeeeEEEEccccCCccccCCCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCcCHHHHHHHhhCCC
Confidence            56999999999998877667899999999997754         433 3799999 589999999875  3334445578


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|.|.
T Consensus        95 ~~v~l~v~R~  104 (110)
T 1x5q_A           95 TAVQMRVWRE  104 (110)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEC
Confidence            8899999883

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.60  E-value=9e-08  Score=78.13  Aligned_cols=62  Identities=16%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCc-eEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK-LSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~-v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++-| |++||+|++|||+++.+++++|+.++|+.+.+. +.|+|.|....
T Consensus        44 ~~v~V~~V~~g---spA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~~~  106 (109)
T 2vsv_A           44 APVQVHFLDPY---CSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDE  106 (109)
T ss_dssp             SSCEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC--
T ss_pred             CCeEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECCCc
Confidence            46899999999   7777765 999999999999999999999999999998886 99999887643

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.01  E-value=5.9e-09  Score=85.23  Aligned_cols=58  Identities=17%  Similarity=0.295  Sum_probs=53.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .++||++|.++   ++|++++.|++||+|++|||+++.+++++++..+|+.+.+.+.|+|.
T Consensus        53 ~gv~V~~V~~~---spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~V~  110 (112)
T 2lob_A           53 VPILISEIHPG---QPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV  110 (112)
Confidence            36999999999   99988788999999999999999999999999999998888888874

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=7.5e-08  Score=79.15  Aligned_cols=60  Identities=22%  Similarity=0.410  Sum_probs=53.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++.++|+..  .+.|+|.|....
T Consensus        44 ~gv~V~~V~~~---spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~--~v~l~v~R~p~~  103 (114)
T 2d8i_A           44 RRLYVNSVKET---GLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP--SLGLLVRTYPEL  103 (114)
T ss_dssp             EEEEEEECCTT---SSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTSS--EEEEEEEECCCS
T ss_pred             CCEEEEEeCCC---CHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC--cEEEEEEECCCC
Confidence            47999999999   8888877 999999999999999999999999999864  899999886543

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.58  E-value=4.8e-08  Score=78.90  Aligned_cols=76  Identities=16%  Similarity=0.073  Sum_probs=59.7

Q ss_pred             cceeeEEEec---ccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          87 GSTFVGSVLG---ARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        87 G~~~g~~i~g---g~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      ..||||++.|   |.+.+.   .+.++||++|.|||.|         +..++|++||+ +.||+.++.+++  .++.+++
T Consensus        14 ~~glG~~l~~~~~~~~~~~---~~~g~~V~~V~~~s~A---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   81 (113)
T 2g5m_B           14 SEGLGISIIGMGAGADMGL---EKLGIFVKTVTEGGAA---------HRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR   81 (113)
T ss_dssp             SSCCCCEEEEEECCCCSSS---CCEEEEEEECCTTSHH---------HHHTCSCTTCBEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCCcCCC---CCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            4699999999   555442   5789999999997754         44444799999 689999999875  4456777


Q ss_pred             hcCCceEEEEEEee
Q psy9829         161 IAHNCISAQIKRTH  174 (333)
Q Consensus       161 ~~g~~v~L~v~R~~  174 (333)
                      ..+..+.|.|.|..
T Consensus        82 ~~g~~v~l~v~R~~   95 (113)
T 2g5m_B           82 NTKGRVRFMIGRER   95 (113)
T ss_dssp             HSCSSCEEEEEECC
T ss_pred             cCCCeEEEEEEeCC
Confidence            78889999998854

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.57  E-value=5.3e-08  Score=77.11  Aligned_cols=62  Identities=24%  Similarity=0.295  Sum_probs=53.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++..+++.. +.+.|+|.|+...+
T Consensus        35 ~g~~V~~V~~~---spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~v~l~v~R~g~~p   96 (101)
T 1uez_A           35 VGIYVSLVEPG---SLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS-KKLVLSVYSAGRIS   96 (101)
T ss_dssp             CCEEEEEECTT---SHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS-SSCCEEECCCCCCS
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC-CeEEEEEEECCccC
Confidence            47999999999   8888777 999999999999999999998888887664 58999999886544

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.57  E-value=5.1e-08  Score=78.97  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.||||.|.||.+.++    +++|||++|.+||+|         +..++|++||+ +.||++++.+++  .+++.|+.+.
T Consensus        24 ~~glG~~i~gg~~~~~----~~~~~V~~v~~~s~A---------~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~   90 (109)
T 1wi4_A           24 ETGLGLKILGGINRNE----GPLVYIHEVIPGGDC---------YKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   90 (109)
T ss_dssp             SSCCCEEEEECSSSSS----CSSEEEEEECTTSHH---------HHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             CCccCEEEEeccCCCC----CCCEEEEEeCCCChH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccc
Confidence            4799999999998765    458999999997654         54445799999 589999999975  5667777654


Q ss_pred             ----CceEEEEEEe
Q psy9829         164 ----NCISAQIKRT  173 (333)
Q Consensus       164 ----~~v~L~v~R~  173 (333)
                          ..++|.+.|.
T Consensus        91 ~r~~~~~~l~v~R~  104 (109)
T 1wi4_A           91 LRSESPWEIAFIRS  104 (109)
T ss_dssp             CSSSSCEEEEEECC
T ss_pred             cCCCceEEEEEEeC
Confidence                5688888773

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.57  E-value=5.3e-08  Score=80.54  Aligned_cols=79  Identities=16%  Similarity=0.100  Sum_probs=64.2

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~  162 (333)
                      ...+|||.+.|+.+.+.+. .+.+++|++|.+||.|         +..++|++||+ +.||+..+.+.  ...+.+|+..
T Consensus        25 ~~~~lG~~i~~~~~~~~~~-~~~gv~V~~V~~~spA---------~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   94 (129)
T 2dmz_A           25 DGQSLGIRIVGYVGTSHTG-EASGIYVKSVIPGSAA---------YHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA   94 (129)
T ss_dssp             TTCCCCEEEEEECCCSSSC-CCCEEEEEEECTTSHH---------HHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHC
T ss_pred             CCCCcCEEEEeecCCcccC-CCCCEEEEEeCCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4679999999999999864 6789999999997754         43333799999 68999999995  3566777778


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      +..+.|.|.|..
T Consensus        95 ~~~v~l~v~R~~  106 (129)
T 2dmz_A           95 GQVVHLTLVRRK  106 (129)
T ss_dssp             CSSEEEEEEEES
T ss_pred             CCeEEEEEEeCC
Confidence            888999998854

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.56  E-value=2.2e-08  Score=80.76  Aligned_cols=78  Identities=14%  Similarity=0.049  Sum_probs=60.7

Q ss_pred             ccceeeEEEecccC----CCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhh
Q psy9829          86 VGSTFVGSVLGARG----ALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQV  158 (333)
Q Consensus        86 ~G~~~g~~i~gg~d----~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~a  158 (333)
                      .+.+|||.|.||.+    +|+. +.+.++||++|.+||.|         +..++|++||+ +.||+.++.+++  .++.+
T Consensus        19 ~~~~lG~~i~gg~~~~~~~~~~-~~~~gv~V~~V~~~spA---------~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   88 (111)
T 1uju_A           19 PGERLGISIRGGARGHAGNPRD-PTDEGIFISKVSPTGAA---------GRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             TTCCCCEEEECCSSSSCSCSSC-TTCCCCEEEEECTTSHH---------HHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             CCCccCEEEECCcccccccccc-CCCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            35799999999995    4544 46889999999997754         44334799999 589999999764  45566


Q ss_pred             hhhcCCceEEEEEEe
Q psy9829         159 FRIAHNCISAQIKRT  173 (333)
Q Consensus       159 lr~~g~~v~L~v~R~  173 (333)
                      ++..+..++|.|.|.
T Consensus        89 l~~~g~~v~l~v~r~  103 (111)
T 1uju_A           89 LRSVGDTLTVLVCDG  103 (111)
T ss_dssp             HSSCSSEEEECCCCC
T ss_pred             HHcCCCeEEEEEEEC
Confidence            677788899999874

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.55  E-value=5.4e-08  Score=75.38  Aligned_cols=74  Identities=12%  Similarity=0.038  Sum_probs=57.7

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.+.||.+.      +.+++|++|.|||.|         +...+|++||+ +.||+.++.+.+  .++.+++..
T Consensus        14 ~~~~lG~~i~~~~~~------~~g~~V~~V~~~spA---------~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~   78 (90)
T 1qav_A           14 DAGGLGISIKGGREN------KMPILISKIFKGLAA---------DQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT   78 (90)
T ss_dssp             TTTCCCEEEEEEGGG------TEEEEEEEECTTSHH---------HHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CCCCcCEEEEcccCC------CCCEEEEEECCCCHH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            357999999998763      368999999997654         43335799999 589999999874  445566777


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      +..++|.|+|.+
T Consensus        79 ~~~v~l~v~r~r   90 (90)
T 1qav_A           79 GKEVVLEVKYMK   90 (90)
T ss_dssp             CSEEEEEEEECC
T ss_pred             CCeEEEEEEEeC
Confidence            888999998853

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.55  E-value=1.1e-07  Score=79.71  Aligned_cols=78  Identities=15%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             ccceeeEEEecccCCCCC------CCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhh
Q psy9829          86 VGSTFVGSVLGARGALDL------ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSW  156 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~------~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~  156 (333)
                      ...||||+|.||.+.+..      ...+.++||++|.|||.|         +..+ |++||+ +.||++++.+++  .++
T Consensus        37 ~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA---------~~aG-L~~GD~Il~Vng~~v~~~~~~~~~  106 (132)
T 3l4f_D           37 DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVA---------WRAG-LRMGDFLIEVNGQNVVKVGHRQVV  106 (132)
T ss_dssp             TTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGG---------GGGT-CCTTCEEEEESSSBCTTSCHHHHH
T ss_pred             CCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHH---------HHcC-CCCCCEEEEECCEECCCCCHHHHH
Confidence            356999999999985432      123469999999997754         4433 799999 689999999875  556


Q ss_pred             hhhhhcCCceEEEEEEe
Q psy9829         157 QVFRIAHNCISAQIKRT  173 (333)
Q Consensus       157 ~alr~~g~~v~L~v~R~  173 (333)
                      .+++..+..+.|.|.|.
T Consensus       107 ~~l~~~g~~v~l~v~~~  123 (132)
T 3l4f_D          107 NMIRQGGNTLMVKVVMV  123 (132)
T ss_dssp             HHHHHTTTEEEEEEECC
T ss_pred             HHHHcCCCEEEEEEEEC
Confidence            67788888999999774

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.55  E-value=2.1e-07  Score=71.74  Aligned_cols=58  Identities=16%  Similarity=0.367  Sum_probs=49.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      .+++|..+ ++   ++|+  +.|++||+|++|||+.+.+++++++..+|+.  ..+.+.|+|.|+.
T Consensus        27 ~~~~v~~v-~~---spA~--aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   86 (88)
T 3bpu_A           27 GGQRVKQI-VD---SPRS--RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT   86 (88)
T ss_dssp             SSEEEEEC-CC-----CC--TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred             CcEEEEEe-cC---ChhH--hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            46899997 88   7776  5899999999999999999999999999986  4678999998875

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.55  E-value=1.2e-07  Score=83.65  Aligned_cols=63  Identities=22%  Similarity=0.297  Sum_probs=58.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.+.|++||+|++|||+.+.+++|.++..+++.+.+.+.|+|.|+.++
T Consensus        33 ~~~~V~~v~~~---spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   95 (200)
T 2qt5_A           33 GKPRVSNLRQG---GIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPP   95 (200)
T ss_dssp             SCSEEEEECTT---SHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEECCC
T ss_pred             CCeEEEEECCC---ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEeccCCC
Confidence            46899999999   8888887899999999999999999999999999999999999999998654

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.52  E-value=1.2e-07  Score=74.11  Aligned_cols=72  Identities=10%  Similarity=0.037  Sum_probs=56.2

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.+.++.+       +++++|++|.|||.         |+..+.|++||+ +.||+.++.+.+  .+..+++..+
T Consensus        15 ~~~lG~~~~~~~~-------~~gv~V~~V~~~sp---------A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   78 (95)
T 2vwr_A           15 GEQLGIKLVRRTD-------EPGVFILDLLEGGL---------AAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASG   78 (95)
T ss_dssp             TCCCCEEEEECSS-------SCSEEEEEECTTSH---------HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCcccEEEEeccC-------CCCEEEEEeCCCCh---------HHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4689999998765       46899999999775         444334799999 689999998875  3455666678


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|..
T Consensus        79 ~~v~l~v~R~~   89 (95)
T 2vwr_A           79 ERVNLTIARPG   89 (95)
T ss_dssp             SEEEEEEEEES
T ss_pred             CEEEEEEEcCC
Confidence            89999998843

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.51  E-value=1.7e-07  Score=82.64  Aligned_cols=63  Identities=24%  Similarity=0.375  Sum_probs=57.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~  285 (333)
                      .++||.+|.++   ++|++.|+|++||+|++|||+.+.++++.++..+|+..  .+.+.|+|.|+...
T Consensus        36 ~~~~V~~v~~~---spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  100 (196)
T 1p1d_A           36 SPPLISYIEAD---SPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE  100 (196)
T ss_dssp             CSEEEEECCTT---SHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSCS
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCCC
Confidence            36999999999   89988888999999999999999999999999999988  57899999998754

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.50  E-value=2e-07  Score=75.31  Aligned_cols=58  Identities=28%  Similarity=0.385  Sum_probs=52.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++..+++.. +.+.|+|.|+
T Consensus        41 ~gv~V~~V~~~---s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~r~   98 (114)
T 1x5n_A           41 PGIFISHVKPG---SLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTISIVAA   98 (114)
T ss_dssp             CSEEEEEECTT---STTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEEECSS
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEcC
Confidence            47999999999   8887776 999999999999999999999999999876 6899999887

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.50  E-value=2.1e-07  Score=74.85  Aligned_cols=63  Identities=17%  Similarity=0.319  Sum_probs=55.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~~~  285 (333)
                      .+++|.++.++   ++|++.|-|++||+|++|||+.+.+++++++.++|+.. .+.+.|+|.|+...
T Consensus        26 ~~~~V~~v~~~---spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~   89 (112)
T 1qau_A           26 PPVIISDLIRG---GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG   89 (112)
T ss_dssp             SCEEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTT
T ss_pred             CCEEEEEeCCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCcc
Confidence            37999999999   88888775699999999999999999999999999985 47899999997643

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.50  E-value=2.5e-07  Score=73.64  Aligned_cols=74  Identities=14%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.+.||.+.      +.+++|++|.|||         ||+..++|++||+ +.||++++.+.+  ..+.+|+.+ 
T Consensus        19 ~~g~G~~i~~g~~~------~~~~~V~~V~~~s---------pA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   83 (103)
T 1uep_A           19 ESGFGFRILGGDEP------GQPILIGAVIAMG---------SADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             SSSCCEEECCCCST------TSCCBEEEECTTS---------TTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CCccCEEEeeecCC------CCCeEEEEeCCCC---------hHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            56899999998742      4679999999976         4554444799999 589999998864  455667765 


Q ss_pred             -CCceEEEEEEeec
Q psy9829         163 -HNCISAQIKRTHF  175 (333)
Q Consensus       163 -g~~v~L~v~R~~~  175 (333)
                       +..++|.|.|...
T Consensus        84 ~g~~v~l~v~R~~~   97 (103)
T 1uep_A           84 RNGQVNLTVRRKVL   97 (103)
T ss_dssp             HHTEEEEEEEEECC
T ss_pred             CCCcEEEEEEeCCC
Confidence             7889999998653

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.49  E-value=4.4e-08  Score=79.57  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeecc-Ccc--hhhhhhhhc
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHN-GVV--GSWQVFRIA  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~-gv~--~a~~alr~~  162 (333)
                      +.+|||.+.||.+.+.   .+.++||++|.|||.|         +..++|++||+ +.||+..+. +.+  .++.+++..
T Consensus        31 ~~~lG~~i~~~~~~~~---~~~gv~V~~V~~~spA---------~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~   98 (117)
T 2o2t_A           31 SGGLGFSVVGLRSENR---GELGIFVQEIQEGSVA---------HRDGRLKETDQILAINGQALDQTITHQQAISILQKA   98 (117)
T ss_dssp             SSCSSCCEEEEECCC-----CEEEEECCCCTTSHH---------HHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC
T ss_pred             CCCCCEEEeecccCCC---CCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            5799999999998764   4789999999997654         54334799999 689999998 664  556677778


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..++|.|.|.
T Consensus        99 ~~~v~l~v~R~  109 (117)
T 2o2t_A           99 KDTVQLVIARG  109 (117)
T ss_dssp             CSEEEEEEESS
T ss_pred             CCEEEEEEEeC
Confidence            88999999873

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.48  E-value=1.6e-07  Score=94.67  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=56.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      .||||.+|.+|   ++|++.| |++||+|++|||+++.+++++|++.+|+.  .++.+.|+|.|+.
T Consensus        23 ~Gi~V~~V~~g---spA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g   84 (468)
T 3shw_A           23 VGIFVAGVLED---SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK   84 (468)
T ss_dssp             TEEEEEEECSS---SHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            47999999999   9999887 99999999999999999999999999998  7789999999953

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.48  E-value=2.2e-07  Score=71.80  Aligned_cols=60  Identities=23%  Similarity=0.247  Sum_probs=53.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.+.++++...+|+.  ..+.+.|+|.|+.
T Consensus        28 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           28 PGIFVASVEAG---SPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             TEEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCEEEEEECCC---ChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            47999999999   8777765 99999999999999988899999999985  4788999998864

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.47  E-value=1.6e-07  Score=74.49  Aligned_cols=77  Identities=13%  Similarity=0.039  Sum_probs=58.6

Q ss_pred             cceeeEEEecccCCCC----C--CCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhh
Q psy9829          87 GSTFVGSVLGARGALD----L--ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQ  157 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~----~--~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~  157 (333)
                      ..+|||++.||.+..+    |  ...+.+++|++|.|||.|         +.. +|++||+ +.||+..+++..  ..+.
T Consensus        18 ~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~   87 (104)
T 3sfj_A           18 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPA---------EIA-GLQIGDKIMQVNGWDMTMVTHDQARK   87 (104)
T ss_dssp             EEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCcccEEEECccccCccccccccCCCCCCEEEEEECCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3489999999999742    1  135789999999997754         433 3799999 689999998886  5556


Q ss_pred             hhhh-cCCceEEEEEEe
Q psy9829         158 VFRI-AHNCISAQIKRT  173 (333)
Q Consensus       158 alr~-~g~~v~L~v~R~  173 (333)
                      +++. .+..+.|.|.|+
T Consensus        88 ~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           88 RLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHTCTTCSEEEEEEEEC
T ss_pred             HHHhCCCCEEEEEEEcC
Confidence            6654 457799999874

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.47  E-value=2.1e-07  Score=76.85  Aligned_cols=62  Identities=27%  Similarity=0.384  Sum_probs=54.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .+++|.+|.++   ++|++.| |++||+|++|||+.+.++++.++.+.++.. +.+.|+|.|+....
T Consensus        46 ~gv~V~~V~~~---spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~R~g~~~  107 (128)
T 1uf1_A           46 LGIYITGVDPG---SEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVGRLP  107 (128)
T ss_dssp             CCCEEEEECTT---CHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEEEECCSCCS
T ss_pred             CCEEEEEECCC---CHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEECCccc
Confidence            37999999999   8887766 999999999999999999999999999885 68999999986543

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.47  E-value=4.3e-07  Score=73.57  Aligned_cols=79  Identities=13%  Similarity=0.066  Sum_probs=61.5

Q ss_pred             ccceeeEEEecccCCCCCCCCC--CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhh
Q psy9829          86 VGSTFVGSVLGARGALDLANYD--PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFR  160 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D--~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr  160 (333)
                      ...+|||.|.|+.+.+..+ .+  ..++|++|.|||         ||+...+|++||+ +.||+..+.++  ...+.+|+
T Consensus        20 ~~~~lGf~l~~~~~~~~~g-~~~~~~~~V~~V~~~s---------pA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~   89 (114)
T 1uew_A           20 ENEGFGFVIISSLNRPESG-STITVPHKIGRIIDGS---------PADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             TTSCCCEEEECCCCSCCSS-CCSCCSCEEEEECTTC---------TTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccCCCC-cccccCeEEEEECCCC---------hHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3569999999999887632 12  267999999976         5555346799999 58999999996  35566777


Q ss_pred             hcCCceEEEEEEee
Q psy9829         161 IAHNCISAQIKRTH  174 (333)
Q Consensus       161 ~~g~~v~L~v~R~~  174 (333)
                      ..+..+.|.|.|..
T Consensus        90 ~~g~~v~l~v~r~~  103 (114)
T 1uew_A           90 DAGLSVTLRIIPQE  103 (114)
T ss_dssp             HTTTEEEEEECCCS
T ss_pred             cCCCeEEEEEEeCC
Confidence            78888999998844

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.46  E-value=1.2e-07  Score=75.72  Aligned_cols=73  Identities=10%  Similarity=0.003  Sum_probs=58.5

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.+.||.+.      +.+++|++|.|||.|         +...+|++||+ +.||++++.+.+  .++.+++.+
T Consensus        19 ~~~~lG~~l~~g~~~------~~~~~V~~V~~~s~A---------~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   83 (103)
T 2dc2_A           19 DHEGLGISITGGKEH------GVPILISEIHPGQPA---------DRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ   83 (103)
T ss_dssp             SSSCCCEEEEEEGGG------TEEEEEEEECTTSHH---------HHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC
T ss_pred             CCCccCEEEEeccCC------CCCEEEEEECCCCHH---------HHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            457999999999764      357999999998754         43235799999 589999998875  556778888


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      ++.++|.|.|.
T Consensus        84 ~~~v~l~v~~~   94 (103)
T 2dc2_A           84 RGEIEFEVVYV   94 (103)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCcEEEEEEec
Confidence            88999999874

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.45  E-value=1.8e-07  Score=72.56  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=55.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.+.++.+       +.+++|++|.|||.         |+..+.|++||+ +.+|+..+.+..  ....+++..+
T Consensus        15 ~~~lG~~~~~~~~-------~~gv~V~~V~~~sp---------A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   78 (92)
T 2qg1_A           15 GKGLGLSIVGKRN-------DTGVFVSDIVKGGI---------ADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL   78 (92)
T ss_dssp             TSCCSEEEECCSS-------SCSCEEEEECTTSH---------HHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCcccEEEEeccC-------CCCEEEEEECCCCH---------HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            5799999998753       46899999999765         444333799999 689999998874  3445566678


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..++|.|.|..
T Consensus        79 ~~v~l~v~R~~   89 (92)
T 2qg1_A           79 GTVTLEVGRIS   89 (92)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEccc
Confidence            88999998853

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.44  E-value=1.3e-07  Score=75.88  Aligned_cols=76  Identities=13%  Similarity=0.114  Sum_probs=58.5

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      .....||||.|.||.+...     +.+||++|.|||+|         +..++|++||+ +.||+.++.+++  .++.+|+
T Consensus        13 ~k~~~glG~~i~gg~~~~~-----~~~~I~~v~~~s~A---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   78 (103)
T 1ufx_A           13 KKSAATLGIAIEGGANTRQ-----PLPRIVTIQRGGSA---------HNCGQLKVGHVILEVNGLTLRGKEHREAARIIA   78 (103)
T ss_dssp             ECCSSSCCEEEECBTTSSC-----SSCEEEEECTTSHH---------HHHCSSCTTCBCCEETTEECTTCBHHHHHHHHH
T ss_pred             EcCCCcCCeEEECCCCCCC-----CcEEEEEeCCCChH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3346799999999988643     67899999997654         54445799999 699999999975  5667777


Q ss_pred             hc-----CCceEEEEEEe
Q psy9829         161 IA-----HNCISAQIKRT  173 (333)
Q Consensus       161 ~~-----g~~v~L~v~R~  173 (333)
                      .+     +..++++|.|.
T Consensus        79 ~~~~~~~~~~i~l~v~r~   96 (103)
T 1ufx_A           79 EAFKTKDRDYIDFLVTEF   96 (103)
T ss_dssp             HHHHCSSCSEEEEEECCC
T ss_pred             HhcccCCCCeEEEEEEEc
Confidence            64     55688888774

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.44  E-value=2.1e-07  Score=76.58  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=58.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.||.+.+     +.++||++|.|||.|         +..++|++||+ +.||+..+.+.+  .++.+++..+
T Consensus        35 ~~glG~~l~~~~~~~-----~~gv~V~~V~~~spA---------~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~  100 (124)
T 2daz_A           35 KNGLGLSLAGNKDRS-----RMSIFVVGINPEGPA---------AADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP  100 (124)
T ss_dssp             SSCCCEEEECBSSTT-----SCCEEEEEECTTSHH---------HHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred             CCccCEEEeccCCCC-----cCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            569999999998754     468999999997754         44334799999 589999998875  4455677778


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|..
T Consensus       101 ~~v~l~v~R~~  111 (124)
T 2daz_A          101 SKVKLVFIRNE  111 (124)
T ss_dssp             SEEEEEEEECT
T ss_pred             CeEEEEEEeCC
Confidence            88999998843

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.44  E-value=1.1e-07  Score=89.08  Aligned_cols=75  Identities=12%  Similarity=0.029  Sum_probs=61.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.||||.|.||.++      +.+|||++|.+||.         |+...+|++||+ +.||++++.+++  .++.+++..+
T Consensus        88 ~~glGf~I~gg~d~------~~gi~V~~V~~gsp---------A~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g  152 (263)
T 1z87_A           88 AGGLGISIKGGREN------KMPILISKIFKGLA---------ADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG  152 (263)
T ss_dssp             TCCCCCEEEEETTT------TEEEEEEECCTTSH---------HHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCC
T ss_pred             CCCEeEEEeeccCC------CCCEEEEEECCCCH---------HHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCC
Confidence            57999999999874      46899999999765         454345799999 589999999985  5677888888


Q ss_pred             CceEEEEEEeecc
Q psy9829         164 NCISAQIKRTHFN  176 (333)
Q Consensus       164 ~~v~L~v~R~~~~  176 (333)
                      ..|+|.|+|....
T Consensus       153 ~~V~L~V~R~~~~  165 (263)
T 1z87_A          153 KEVVLEVKYMKEV  165 (263)
T ss_dssp             SCCCEEEECCSSS
T ss_pred             CeEEEEEEeCccc
Confidence            8999999996543

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.43  E-value=1.9e-07  Score=72.05  Aligned_cols=73  Identities=16%  Similarity=0.105  Sum_probs=55.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.+.||.+.      +.+++|++|.|||.|         +..++|++||+ +.+|+.++.+.+  ....+++..+
T Consensus        12 ~~g~G~~~~~g~~~------~~~~~V~~V~~~spA---------~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   76 (90)
T 2q9v_A           12 ETGFGFRILGGNEP------GEPIYIGHIVPLGAA---------DTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAA   76 (90)
T ss_dssp             TTBCCEEEEECSST------TSCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CCccCEEEEccccC------CCCEEEEEECCCChH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            46899999998763      234999999997654         44334799999 589999997764  4456677664


Q ss_pred             C--ceEEEEEEee
Q psy9829         164 N--CISAQIKRTH  174 (333)
Q Consensus       164 ~--~v~L~v~R~~  174 (333)
                      +  .++|.|.|++
T Consensus        77 ~~~~v~l~v~R~~   89 (90)
T 2q9v_A           77 KQGHVNLTVRQTR   89 (90)
T ss_dssp             HHTEEEEEEEECC
T ss_pred             CCCeEEEEEEecc
Confidence            3  7999998854

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.43  E-value=2.6e-07  Score=75.99  Aligned_cols=59  Identities=17%  Similarity=0.284  Sum_probs=53.1

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC-ceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~-~v~L~V~R~~  283 (333)
                      +++|.+|.++   ++|++.| |++||+|++|||+.+.+++++++..+|+.... .+.|+|.|+.
T Consensus        34 gv~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g   93 (128)
T 2kjd_A           34 GQFIRSVDPD---SPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET   93 (128)
T ss_dssp             SEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHH
T ss_pred             CEEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCC
Confidence            7999999999   8888877 99999999999999999999999999998755 5668998864

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.40  E-value=2.5e-07  Score=71.00  Aligned_cols=72  Identities=10%  Similarity=0.003  Sum_probs=56.6

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.+.||.+.      +.++||++|.|||.|         +...+|++||+ +.||+.++.+.+  .++.+++..
T Consensus        12 ~~~~lG~~i~~~~~~------~~~~~V~~V~~gspA---------~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~   76 (87)
T 4e34_A           12 DHEGLGISITGGKEH------GVPILISEIHPGQPA---------DRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ   76 (87)
T ss_dssp             TTBCCCEEEEEEGGG------TEEEEEEEECTTSHH---------HHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCCcccEEEEccCCC------CCCEEEEEECCCCHH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            356999999998763      357999999997754         43235799999 689999998874  556677778


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..++|.|++
T Consensus        77 ~~~v~l~v~~   86 (87)
T 4e34_A           77 RGEIEFEVVY   86 (87)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            8889998865

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.39  E-value=4.8e-07  Score=74.45  Aligned_cols=74  Identities=14%  Similarity=0.100  Sum_probs=57.2

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh--
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI--  161 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~--  161 (333)
                      ..||||.+.||.+      .+.+++|++|.+||.|         +..+.|++||+ +.||+.++.+.+  ..+.+|+.  
T Consensus        29 ~~glG~~~~~g~~------~~~gv~V~~V~~~spA---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (123)
T 1ueq_A           29 NMGFGFTIIGGDE------PDEFLQVKSVIPDGPA---------AQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             TTSCSEEEECCSS------SSCCCEEEEECTTSHH---------HHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCceeEEEecccC------CCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            5699999999865      2567999999997754         43333799999 689999998764  45567776  


Q ss_pred             cCCceEEEEEEeec
Q psy9829         162 AHNCISAQIKRTHF  175 (333)
Q Consensus       162 ~g~~v~L~v~R~~~  175 (333)
                      .+..++|.|.|...
T Consensus        94 ~g~~v~l~v~R~~~  107 (123)
T 1ueq_A           94 IGQSVNLVLCRGYP  107 (123)
T ss_dssp             TTCEEEEEEEESCC
T ss_pred             CCCeEEEEEEeCCC
Confidence            46889999998553

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.39  E-value=3.2e-07  Score=74.79  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCc-eEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK-LSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~-v~L~V~R~~~~~  286 (333)
                      .+++|.++.++   ++|++-| |++||+|++|||+.+.+++++|+.++|+.+.+. +.|+|.|.....
T Consensus        36 ~~v~V~~V~~~---spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~~~~~   99 (111)
T 1vae_A           36 TPVQVHFLDPH---CSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDST   99 (111)
T ss_dssp             SSCEECCCCTT---SSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEECCC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEecCCCc
Confidence            46899999999   7776654 999999999999999999999999999988775 999998875444

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.38  E-value=5.4e-07  Score=72.04  Aligned_cols=56  Identities=23%  Similarity=0.477  Sum_probs=49.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      .++||.++.++   ++|++-| |++||+|++|||+...++++++..+++++  ..++|+|..
T Consensus        35 ~g~~V~~V~~~---spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~--~~l~ltV~~   90 (94)
T 3kzd_A           35 RRLYVNSVKET---GLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRT   90 (94)
T ss_dssp             CEEEEEEECTT---SHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS--SEEEEEEEE
T ss_pred             CCeEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC--CeEEEEEEe
Confidence            37999999999   8887765 99999999999999999999999999985  568887743

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.38  E-value=3.2e-07  Score=75.19  Aligned_cols=72  Identities=10%  Similarity=0.037  Sum_probs=56.5

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc--
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA--  162 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~--  162 (333)
                      .||||+|.||.+.+.     ..++|++|.+||+         |+..++|++||+ +.||++.+.+++  .++..|+..  
T Consensus        28 ~glG~~i~gg~~~~~-----~~i~I~~V~~gsp---------A~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~   93 (118)
T 1v6b_A           28 GSLDLALEGGVDSPV-----GKVVVSAVYEGGA---------AERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWN   93 (118)
T ss_dssp             SCCCCEEEEBTTSSS-----CSEEEEECCTTSH---------HHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHH
T ss_pred             CccCEEEEcccCCCC-----CCEEEEEECCCCH---------HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhh
Confidence            499999999988764     2499999999765         454435799999 689999999875  455666654  


Q ss_pred             --CCceEEEEEEe
Q psy9829         163 --HNCISAQIKRT  173 (333)
Q Consensus       163 --g~~v~L~v~R~  173 (333)
                        +..++|.|.|.
T Consensus        94 ~~g~~v~l~v~r~  106 (118)
T 1v6b_A           94 QGGDWIDLVVAVC  106 (118)
T ss_dssp             HTCSEEEEEEECC
T ss_pred             cCCCeEEEEEEeC
Confidence              77899999883

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.37  E-value=4.7e-07  Score=74.48  Aligned_cols=74  Identities=9%  Similarity=-0.025  Sum_probs=58.5

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||++.||.+.      .+++||++|.+||.|         +..++|++||+ +.||+.++.+.+  ..+.+++..
T Consensus        29 ~~~~lG~~i~gg~~~------~~~~~V~~v~~gspA---------~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   93 (125)
T 3hpk_A           29 AQNLIGISIGGGAQY------CPCLYIVQVFDNTPA---------ALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV   93 (125)
T ss_dssp             TTSCCCEEEEECSSC------CSSEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CCCCcCEEEeccCCC------CCCEEEEEeCCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            356899999998752      368999999997754         44334799999 689999999875  456677888


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      +..++|.|+|..
T Consensus        94 ~~~v~l~v~r~~  105 (125)
T 3hpk_A           94 KGEVTIHYNKLQ  105 (125)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEECC
Confidence            888999998844

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.37  E-value=4.1e-07  Score=89.50  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=55.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      .++||.+|.+|   ++|++.| |++||+|++|||+++.+++++|+..+|+.  .++.+.|+|.|+.
T Consensus        31 ~gi~V~~V~~g---spA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~   92 (391)
T 3tsz_A           31 VGIFVAGVLED---SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK   92 (391)
T ss_dssp             TEEEEEEECTT---CHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence            47999999999   9999888 99999999999999999999999999996  6778999999864

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.36  E-value=6.8e-07  Score=73.63  Aligned_cols=61  Identities=26%  Similarity=0.400  Sum_probs=54.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.|+|++||+|++|||+.+.  +++++.++|+.. .+.+.|+|.|+...
T Consensus        48 ~gv~V~~V~~~---spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~  109 (124)
T 1wh1_A           48 IGIYISEIDPN---SIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQ  109 (124)
T ss_dssp             CCEEEEEECSS---SHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEEEEECSSC
T ss_pred             CCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            47999999999   999988889999999999999887  589999999985 56899999998644

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.36  E-value=8.3e-07  Score=71.20  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=60.6

Q ss_pred             ccceeeEEEecccCCCCC------CCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhh
Q psy9829          86 VGSTFVGSVLGARGALDL------ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSW  156 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~------~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~  156 (333)
                      ...||||.+.|+.+.++.      ...+.+++|++|.+||.|         +.. +|++||+ +.||+..+.+.  ....
T Consensus        17 ~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA---------~~a-Gl~~GD~I~~vng~~v~~~~~~~~~   86 (109)
T 1q3o_A           17 DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVA---------WRA-GLRMGDFLIEVNGQNVVKVGHRQVV   86 (109)
T ss_dssp             TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHH---------HHT-TCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHH
Confidence            356999999999986532      123458999999998765         332 3799999 68999999998  4556


Q ss_pred             hhhhhcCCceEEEEEEee
Q psy9829         157 QVFRIAHNCISAQIKRTH  174 (333)
Q Consensus       157 ~alr~~g~~v~L~v~R~~  174 (333)
                      .+++..+..+.|.|.|..
T Consensus        87 ~~l~~~~~~v~l~v~~~~  104 (109)
T 1q3o_A           87 NMIRQGGNTLMVKVVMVT  104 (109)
T ss_dssp             HHHHHTTTEEEEEEEEEE
T ss_pred             HHHHhCCCEEEEEEEECC
Confidence            677777888999998854

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.35  E-value=3.9e-07  Score=75.07  Aligned_cols=62  Identities=18%  Similarity=0.327  Sum_probs=55.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC-CceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~-~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++.|-|++||+|++|||+.+.+++++++.++|+... +.+.|+|.|+..
T Consensus        33 ~~~~V~~V~~~---spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~   95 (127)
T 1b8q_A           33 PPVIISDLIRG---GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE   95 (127)
T ss_dssp             SCEEECCCSSS---SSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCC
T ss_pred             CCEEEEEeCCC---CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCc
Confidence            37999999999   888887756999999999999999999999999999854 689999999764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.35  E-value=4.1e-07  Score=70.88  Aligned_cols=71  Identities=10%  Similarity=-0.014  Sum_probs=55.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.+.++       ..+.+++|++|.+||.|         +..++|++||+ +.||+..+.+.+  ....+|+.++
T Consensus        14 ~~~lG~~i~~~-------~~~~~~~V~~v~~gspA---------~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   77 (93)
T 3o46_A           14 REPLGATIKKD-------EQTGAIIVARIMRGGAA---------DRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ   77 (93)
T ss_dssp             SSCCCEEEEEC-------TTTCCEEEEEECTTSHH---------HHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             CCCccEEEEec-------CCCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            56999999986       13678999999997754         44334799999 689999997764  5567788888


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|.|.
T Consensus        78 ~~v~l~v~~~   87 (93)
T 3o46_A           78 GAITFKIIPG   87 (93)
T ss_dssp             EEEEEEEECC
T ss_pred             CeEEEEEEeC
Confidence            8899998763

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.34  E-value=5e-07  Score=73.12  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=55.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.+.||.+.      +.+++|++|.+||.|         +..++|++||+ +.||+..+.+.+  ..+.+++..+
T Consensus        34 ~~glG~~l~~~~~~------~~gv~V~~V~~~spA---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g   98 (112)
T 2r4h_A           34 AKGFGFSLRGGREY------NMDLYVLRLAEDGPA---------ERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG   98 (112)
T ss_dssp             TTBTSEEEEECGGG------TCCEEEEEECTTSHH---------HHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CCccCEEEeccccC------CCCEEEEEECCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45899999998753      468999999998755         43223799999 589999998874  4455666678


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|.|.
T Consensus        99 ~~v~l~v~R~  108 (112)
T 2r4h_A           99 RRVRLFLKRG  108 (112)
T ss_dssp             TEEEEEEECC
T ss_pred             CeEEEEEEeC
Confidence            8899999873

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.33  E-value=6.8e-07  Score=70.01  Aligned_cols=73  Identities=14%  Similarity=0.075  Sum_probs=56.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.+|.+.+.     .+++|++|.|||.|         +..++|++||+ +.||+.++.+.+  ....+++..+
T Consensus        14 ~~~lG~~l~~~~~~~~-----~gv~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   79 (98)
T 2opg_A           14 RTGLGLSIVGGSDTLL-----GAIIIHEVYEEGAA---------CKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP   79 (98)
T ss_dssp             TTBTCEEEEECTTSTT-----CSEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CCcccEEEecCCCCCC-----CCEEEEEECCCChH---------HhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4689999999887653     58999999998754         43323799999 589999999874  4455666677


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        80 ~~v~l~v~R~   89 (98)
T 2opg_A           80 QRVRLTLYRD   89 (98)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEcC
Confidence            8899999873

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.33  E-value=1.1e-06  Score=69.71  Aligned_cols=75  Identities=13%  Similarity=0.127  Sum_probs=55.4

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-  161 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-  161 (333)
                      .+.+|||.+.+..+.    ..+++++|++|.+||         ||+...+|++||+ +.||+..+.+.+  ....+|+. 
T Consensus        19 ~g~~lG~~i~~~~~~----~~~~~~~V~~V~~~s---------pA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   85 (101)
T 2yt7_A           19 RGEGLGVALVESGWG----SLLPTAVIANLLHGG---------PAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRET   85 (101)
T ss_dssp             TTCCCCEEEEECCCS----SSSCCEEEEEECTTS---------TTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred             CCCccCEEEEeCCCC----CCccCEEEEEECCCC---------HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            356999999852221    246789999999976         4554445799999 589999996654  55667776 


Q ss_pred             -cCCceEEEEEEe
Q psy9829         162 -AHNCISAQIKRT  173 (333)
Q Consensus       162 -~g~~v~L~v~R~  173 (333)
                       .+..++|.|.|.
T Consensus        86 ~~g~~v~l~v~R~   98 (101)
T 2yt7_A           86 KSQTSVTLSIVHC   98 (101)
T ss_dssp             TTSSEEEEEECCC
T ss_pred             CCCCeEEEEEEeC
Confidence             677899999873

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.33  E-value=5.2e-07  Score=71.35  Aligned_cols=71  Identities=11%  Similarity=0.032  Sum_probs=55.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.||||.+.++.+       ..++||++|.|||.|         +..++|++||+ +.||+.++.+.+  ..+.+++..+
T Consensus        21 ~~glG~~~~~~~~-------~~gv~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   84 (104)
T 3i4w_A           21 STGLGFNIVGGEX-------GEGIFISFILAGGPA---------DLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   84 (104)
T ss_dssp             TTBTSEEEEECC--------CCCEEEEEECTTSHH---------HHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCccCEEEECCCC-------CCCEEEEEECCCChH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            5699999998854       358999999998754         43333799999 689999998875  4455667778


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|+|.
T Consensus        85 ~~v~l~v~r~   94 (104)
T 3i4w_A           85 QTVTIIAQYK   94 (104)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEC
Confidence            8899999884

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.32  E-value=8.3e-07  Score=72.29  Aligned_cols=75  Identities=15%  Similarity=0.152  Sum_probs=55.8

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.|.||.+..     +.+++|++|.|||.         |+..++|++||+ +.||+..+.+++  .++.+++..
T Consensus        25 ~~~~lG~~i~g~~~~~-----~~gv~V~~V~~~sp---------A~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   90 (119)
T 1x6d_A           25 EGAGLGFSLAGGADLE-----NKVITVHRVFPNGL---------ASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQA   90 (119)
T ss_dssp             TTSCCSEEEECCSSSS-----CSSCEEEEECSSSH---------HHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHT
T ss_pred             CCCccCEEEeCCCCCC-----CCCEEEEEECCCCh---------HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3679999999988752     47899999999765         454434799999 699999999864  455667666


Q ss_pred             CCc-eEEEEEEee
Q psy9829         163 HNC-ISAQIKRTH  174 (333)
Q Consensus       163 g~~-v~L~v~R~~  174 (333)
                      +.. +.++++|..
T Consensus        91 ~~~~~~l~v~R~~  103 (119)
T 1x6d_A           91 REPRQAVIVTRKL  103 (119)
T ss_dssp             TSSSEEEEEEECC
T ss_pred             CCCeEEEEEEcCC
Confidence            555 457777643

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.32  E-value=4.8e-07  Score=68.95  Aligned_cols=70  Identities=10%  Similarity=0.124  Sum_probs=54.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.||.+.      +.+++|++|.|||.|         +. .+|++||+ +.||+..+.+.+  ....+++..+
T Consensus        10 ~~~~G~~l~gg~~~------~~~v~V~~V~~~spA---------~~-aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   73 (85)
T 1rgw_A           10 PGPWGFRLQGGKDF------NMPLTISRITPGSKA---------AQ-SQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS   73 (85)
T ss_dssp             SSCCCEEECCCGGG------TSCCBEEEECTTSHH---------HH-SSCCCCSBEEEETTEECTTCCHHHHHHHHTTCS
T ss_pred             CCccCEEEEeccCC------CCCeEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCcCHHHHHHHHHcCC
Confidence            46899999998764      357999999998755         32 35799999 589999999883  4455566667


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..+.|.|.|
T Consensus        74 ~~v~l~v~R   82 (85)
T 1rgw_A           74 YNLSLTLQK   82 (85)
T ss_dssp             SCEEEEEES
T ss_pred             CeEEEEEEe
Confidence            779999977

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.32  E-value=6.2e-07  Score=68.47  Aligned_cols=71  Identities=20%  Similarity=0.157  Sum_probs=53.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.+.||.+      .+.+++|++|.|||.|         +..+.|++||+ +.||+..+.+.+  ....+++.. 
T Consensus        10 ~~g~G~~i~~~~~------~~~~~~V~~v~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   74 (85)
T 2i04_A           10 SRGFGFTVVGGDE------PDEFLQIKSLVLDGPA---------ALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP   74 (85)
T ss_dssp             TTBSSEEEEECCS------TTBCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEcccC------CCCCEEEEEECCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4589999998764      2568999999997754         43333799999 689999998763  445566665 


Q ss_pred             -CCceEEEEEE
Q psy9829         163 -HNCISAQIKR  172 (333)
Q Consensus       163 -g~~v~L~v~R  172 (333)
                       +..++|.|.|
T Consensus        75 ~g~~v~l~v~R   85 (85)
T 2i04_A           75 IGASVDLELCR   85 (85)
T ss_dssp             TTCEEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence             6778888865

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.31  E-value=5.3e-07  Score=73.63  Aligned_cols=75  Identities=11%  Similarity=0.014  Sum_probs=58.5

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.+.++.+.     ++.++||++|.|||.|         +..++|++||+ +.||+..+.+.+  ..+.+|+..
T Consensus        25 ~~~~lG~~i~~~~~~-----~~~~~~V~~V~~~spA---------~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   90 (117)
T 1v62_A           25 PGSALGISLTTTSLR-----NKSVITIDRIKPASVV---------DRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI   90 (117)
T ss_dssp             TTCCCCCEEEEECCS-----SSCEEEEEECCTTSHH---------HHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC
T ss_pred             CCCcccEEEEccCCC-----CCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            357999999988763     2356999999997754         54444799999 689999997764  556677777


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      +..++|.|.|..
T Consensus        91 g~~v~l~v~r~~  102 (117)
T 1v62_A           91 SEKVRLEILPVP  102 (117)
T ss_dssp             SSEEEEEECCBT
T ss_pred             CCeEEEEEEECC
Confidence            889999998854

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.31  E-value=1.8e-07  Score=77.57  Aligned_cols=77  Identities=6%  Similarity=-0.056  Sum_probs=58.5

Q ss_pred             cceeeEEEecccCCC--CCC-CCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          87 GSTFVGSVLGARGAL--DLA-NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        87 G~~~g~~i~gg~d~p--~~~-~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      +.+|||.|.||.+.-  .+. ..++++||++|.+||.|         +..+.|++||+ +.||+.++.+.+  ..+.+++
T Consensus        41 ~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA---------~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~  111 (128)
T 1nf3_C           41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLA---------QSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI  111 (128)
T ss_dssp             TSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHH---------HHHTCCCTTCEEEEETTEESTTCCHHHHHHHHH
T ss_pred             CCCccEEEEccccccccccccCCCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            469999999998742  110 13578999999997754         44333699999 689999997764  5566777


Q ss_pred             hcCCceEEEEEE
Q psy9829         161 IAHNCISAQIKR  172 (333)
Q Consensus       161 ~~g~~v~L~v~R  172 (333)
                      ..+..++|.|.|
T Consensus       112 ~~~~~v~l~v~r  123 (128)
T 1nf3_C          112 ANSRNLIITVRP  123 (128)
T ss_dssp             HTTTSEEEEEEC
T ss_pred             cCCCeEEEEEEE
Confidence            788889999987

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.31  E-value=7.6e-07  Score=69.14  Aligned_cols=77  Identities=16%  Similarity=0.086  Sum_probs=57.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.++.+.++  ..+.+++|++|.+||.|         +..++|++||+ +.||+..+.+.+  ..+.+++..+
T Consensus        14 ~~~lG~~i~~~~~~~~--~~~~~~~V~~v~~~s~A---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (97)
T 2iwn_A           14 VQGLGITIAGYIGDKK--LEPSGIFVKSITKSSAV---------EHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG   82 (97)
T ss_dssp             TTBSCEEEECCCCC------CCCCEEEEECTTCHH---------HHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred             CCCCcEEEEccCCCCC--CCCCCEEEEEeCCCChH---------HhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4689999999988776  35789999999998754         43323799999 689999999874  3345556678


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|..
T Consensus        83 ~~v~l~v~r~g   93 (97)
T 2iwn_A           83 QTVLLTLMRRG   93 (97)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CeEEEEEEeCC
Confidence            88999998743

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.31  E-value=6.8e-07  Score=68.62  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~  162 (333)
                      ...+|||.+.||.+.      +.+++|++|.|||.|         +. .+|++||+ +.+|+..+.+.  .....+++..
T Consensus        10 ~~~~lG~~l~~~~~~------~~g~~V~~V~~~spA---------~~-aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~   73 (87)
T 2pa1_A           10 GPAPWGFRITGGRDF------HTPIMVTKVAERGKA---------KD-ADLRPGDIIVAINGESAEGMLHAEAQSKIRQS   73 (87)
T ss_dssp             SSSCCSEEEEEEGGG------TEEEEEEEECSSSHH---------HH-TTCCTTCEEEEETTEESTTCCHHHHHHHHHTC
T ss_pred             CCCccCEEEecccCC------CCCEEEEEECCCChH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            456899999998764      468999999997754         43 35799999 58999999995  4556677776


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|.
T Consensus        74 ~~~v~l~v~R~   84 (87)
T 2pa1_A           74 PSPLRLQLDRI   84 (87)
T ss_dssp             CSSEEEEEEEC
T ss_pred             CCeEEEEEEec
Confidence            67899999883

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.31  E-value=7.3e-07  Score=68.74  Aligned_cols=72  Identities=10%  Similarity=0.082  Sum_probs=55.9

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||.+.||.+.      +.+++|++|.|||.|         +.. +|++||+ +.+|+..+.+.+  ....+++..
T Consensus        11 ~~~~~G~~l~gg~~~------~~~v~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~   74 (89)
T 2q3g_A           11 GPAPWGFRLQGGKDF------NVPLSISRLTPGGKA---------AQA-GVAVGDWVLSIDGENAGSLTHIEAQNKIRAC   74 (89)
T ss_dssp             SSSCCCEEEEEEGGG------TEEEEEEEECTTSHH---------HHT-TCCTTCEEEEETTEEGGGCCHHHHHHHHHTC
T ss_pred             CCCcccEEEECcCCC------CCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            457899999998863      468999999998755         332 3799999 689999999873  444566667


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|.
T Consensus        75 g~~v~l~v~R~   85 (89)
T 2q3g_A           75 GERLSLGLSRA   85 (89)
T ss_dssp             TTEEEEEEEEE
T ss_pred             CCEEEEEEEeC
Confidence            88899999874

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.29  E-value=5.4e-07  Score=74.80  Aligned_cols=73  Identities=19%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.+.||.+      .+.+++|++|.+||.|         +..++|++||+ +.||+..+.+.+  ..+.+|+.+ 
T Consensus        28 ~~g~G~~i~g~~~------~~~~v~V~~V~~~spA---------~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~   92 (129)
T 2kpk_A           28 SRGFGFTVVGGDE------PDEFLQIKSLVLDGPA---------ALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP   92 (129)
T ss_dssp             SSCCSEEEEEEEE------TTEEEEEEEECTTSHH---------HHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             CCcccEEEeCccC------CCCCEEEEEECCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4599999999875      2568999999997754         43334799999 589999999875  556677776 


Q ss_pred             -CCceEEEEEEee
Q psy9829         163 -HNCISAQIKRTH  174 (333)
Q Consensus       163 -g~~v~L~v~R~~  174 (333)
                       +..++|.|.|..
T Consensus        93 ~g~~v~l~v~R~~  105 (129)
T 2kpk_A           93 IGASVDLELCRGY  105 (129)
T ss_dssp             TTEEEEEEEEECS
T ss_pred             CCCeEEEEEEeCC
Confidence             677999998854

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.29  E-value=7.1e-07  Score=72.68  Aligned_cols=71  Identities=8%  Similarity=-0.008  Sum_probs=54.6

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCc-cccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGE-MSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~-l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      .+|||.+.||.+.      +.++||++|.|||.         |+.. .+|++||+ +.||+.++.+.+  .++.+++..+
T Consensus        27 ~~~G~~l~gg~~~------~~~v~V~~V~~~sp---------A~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~   91 (119)
T 2cs5_A           27 GRFGFNVKGGYDQ------KMPVIVSRVAPGTP---------ADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   91 (119)
T ss_dssp             SCCSEEEEEEGGG------TEEEEEEEECSSST---------TTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHH
T ss_pred             CCcCEEEecccCC------CCCeEEEEECCCCH---------HHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            4699999999763      35799999999765         4543 35799999 589999999874  4455666664


Q ss_pred             ----CceEEEEEEe
Q psy9829         164 ----NCISAQIKRT  173 (333)
Q Consensus       164 ----~~v~L~v~R~  173 (333)
                          ..+.|.|.|.
T Consensus        92 ~~~~~~v~l~v~R~  105 (119)
T 2cs5_A           92 ERHSGELMLLVRPN  105 (119)
T ss_dssp             HCCSSCEEEEEECC
T ss_pred             ccCCCEEEEEEEcc
Confidence                4799999884

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.29  E-value=1e-06  Score=70.69  Aligned_cols=70  Identities=6%  Similarity=-0.091  Sum_probs=54.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..+|||+|.++        ++..+||++|.+||+         |+....|++||. +.||++++.|.+  ..++.||.+ 
T Consensus        15 ~~~LG~tI~~~--------g~g~~~I~rI~~gg~---------a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~   77 (95)
T 3gge_A           15 EDSLGLTITDN--------GVGYAFIKRIKDGGV---------IDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELK   77 (95)
T ss_dssp             SSCCCEEEECS--------SSSCCEEEEECTTSH---------HHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CCCceEEEEcC--------CCCcEEEEEEcCCCh---------HHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCC
Confidence            57999999863        245689999999765         566677899999 589999999986  667788874 


Q ss_pred             -CCceEEEEEEe
Q psy9829         163 -HNCISAQIKRT  173 (333)
Q Consensus       163 -g~~v~L~v~R~  173 (333)
                       +.+++|.+-+.
T Consensus        78 ~g~~~~L~lv~p   89 (95)
T 3gge_A           78 KEELFTMKLIEP   89 (95)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCCEEEEEEECc
Confidence             45788887664

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.28  E-value=8.4e-07  Score=71.56  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      +.+.||||.+.+         .+.+++|++|.|||.         |+..++|++||+ +.||+.++.++.  .+..+++.
T Consensus        11 ~~~~glG~~i~~---------~~~gv~V~~V~~gsp---------A~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~   72 (106)
T 2la8_A           11 KAGKELGLSLSP---------NEIGCTIADLIQGQY---------PEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG   72 (106)
T ss_dssp             BSSSTTCCEEEE---------CSSSEEEEECCTTSC---------HHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS
T ss_pred             CCCCccCEEEEe---------CCCCEEEEEECCCCH---------HHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            446789999876         246899999999765         454434799999 589999999875  33455666


Q ss_pred             cCCceEEEEEEee
Q psy9829         162 AHNCISAQIKRTH  174 (333)
Q Consensus       162 ~g~~v~L~v~R~~  174 (333)
                      .+..+.|.|.|..
T Consensus        73 ~~~~v~l~v~R~~   85 (106)
T 2la8_A           73 ANGKVSMEVTRPK   85 (106)
T ss_dssp             CBSCEEEEEEECC
T ss_pred             CCCeEEEEEEeCC
Confidence            7778999998854

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=6.5e-07  Score=69.38  Aligned_cols=71  Identities=10%  Similarity=0.178  Sum_probs=55.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.||.+.      +.+++|++|.|||.|         +..++|++||+ +.||+.++.+.+  ..+.+++..+
T Consensus        15 ~~glG~~l~~~~~~------~~~~~V~~V~~~spA---------~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   79 (93)
T 2dkr_A           15 DEGLGFNIMGGKEQ------NSPIYISRVIPGGVA---------DRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ   79 (93)
T ss_dssp             TTCCCEEEECSSSS------SCCCEEEEECTTSHH---------HHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             CCCccEEEecccCC------CCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            56999999988652      468999999997754         43223799999 689999999863  4455667677


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..+.|.|.|
T Consensus        80 ~~v~l~v~r   88 (93)
T 2dkr_A           80 GSVKLVVRS   88 (93)
T ss_dssp             SEEEEEECC
T ss_pred             CcEEEEEEe
Confidence            789999987

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.28  E-value=1.1e-06  Score=70.58  Aligned_cols=75  Identities=11%  Similarity=0.013  Sum_probs=57.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.+.++.+.+.   ++.+++|++|.|||.|         +..++|++||+ +.||+..+.+.+  ....+++.. 
T Consensus        21 ~~glG~~~~~~~~~~~---~~~g~~V~~V~~~spA---------~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   88 (111)
T 2koj_A           21 TEGLGFSITSRDVTIG---GSAPIYVKNILPRGAA---------IQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTK   88 (111)
T ss_dssp             TTBTCEEEEECSCSSS---SSSCEEEEEECSSSHH---------HHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             CCccCEEEEeccCCCC---CCcCEEEEEECCCChH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4589999999876543   5789999999998755         43323799999 589999998863  455666664 


Q ss_pred             -CCceEEEEEEe
Q psy9829         163 -HNCISAQIKRT  173 (333)
Q Consensus       163 -g~~v~L~v~R~  173 (333)
                       +..+.|.|.|.
T Consensus        89 ~g~~v~l~v~R~  100 (111)
T 2koj_A           89 MEGTVSLLVFRQ  100 (111)
T ss_dssp             CSSEEEEEEEEC
T ss_pred             CCCeEEEEEEeC
Confidence             77899999884

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.27  E-value=1.1e-06  Score=68.08  Aligned_cols=72  Identities=10%  Similarity=0.094  Sum_probs=57.9

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.+.||.+.      +.+++|++|.|||.|         +. .+|++||+ +.+|+..+.+..  ....+++..
T Consensus        11 ~~~~~G~~l~~~~~~------~~g~~V~~V~~~spA---------~~-aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~   74 (91)
T 2pkt_A           11 GPGPWGFRLVGGKDF------EQPLAISRVTPGSKA---------AL-ANLCIGDVITAIDGENTSNMTHLEAQNRIKGC   74 (91)
T ss_dssp             SSSCCSEEEEEEGGG------TEEEEEEEECTTSHH---------HH-TTCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CCCCCCEEEEccCCC------CCCeEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            356899999998763      368999999998754         43 23799999 589999999987  666777777


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|.
T Consensus        75 g~~v~l~v~R~   85 (91)
T 2pkt_A           75 TDNLTLTVARS   85 (91)
T ss_dssp             SSEEEEEEEEE
T ss_pred             CCeEEEEEEEC
Confidence            88899999884

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.27  E-value=9e-07  Score=68.36  Aligned_cols=70  Identities=11%  Similarity=0.079  Sum_probs=55.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g  163 (333)
                      ..||||.+.++.+       +.+++|++|.|||.|         +.. +|++||+ +.+|+..+.+.  .....+++..+
T Consensus        14 ~~g~G~~~~~~~~-------~~gv~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   76 (90)
T 2he4_A           14 PQGYGFNLHSDKS-------RPGQYIRSVDPGSPA---------ARS-GLRAQDRLIEVNGQNVEGLRHAEVVASIKARE   76 (90)
T ss_dssp             TTBCCEEEEECSS-------SSSEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTSCHHHHHHHHTTSS
T ss_pred             CCCccEEEEccCC-------CCCEEEEEECCCChH---------HHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4689999998754       368999999997754         443 3799999 68999999998  45566777778


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        77 ~~v~l~v~r~   86 (90)
T 2he4_A           77 DEARLLVVGP   86 (90)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEEEEEcc
Confidence            8899999873

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.26  E-value=1.8e-06  Score=71.15  Aligned_cols=64  Identities=25%  Similarity=0.396  Sum_probs=55.8

Q ss_pred             CeEEEEEEcc--CcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTH--RLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~--g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .+++|.+|.+  +   ++|++- .|++||+|++|||+.+.+++|++...+|+...+.+.|+|.|+....+
T Consensus        44 ~gv~V~~V~~~~~---spA~~a-GL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~~~  109 (118)
T 2yub_A           44 TTVQVKEVNRMHI---SPNNRN-AIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQR  109 (118)
T ss_dssp             CEEEEEECCTTTS---CTTHHH-HCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSCCC
T ss_pred             CcEEEEEecCCCC---ChHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEEEe
Confidence            4799999999  8   666654 49999999999999999999999999999887789999999876544

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.26  E-value=1.2e-06  Score=70.34  Aligned_cols=71  Identities=18%  Similarity=0.231  Sum_probs=54.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.+.|+.+        .+++|++|.+||.|         +..++|++||+ +.||+..+.+.+  ....+++.++
T Consensus        25 ~~~lG~~l~~~~~--------~g~~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   87 (111)
T 2dlu_A           25 GSGLGFGIVGGKT--------SGVVVRTIVPGGLA---------DRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG   87 (111)
T ss_dssp             SSCCCEEEECCSS--------SSBEEEEECTTSSH---------HHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHC
T ss_pred             CCccCEEEeccCC--------CCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            5689999987643        57999999997754         43333799999 589999998764  4556677778


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|..
T Consensus        88 ~~v~l~v~R~~   98 (111)
T 2dlu_A           88 NSVRMLVARDP   98 (111)
T ss_dssp             SEEEEEEEESC
T ss_pred             CeEEEEEEeCC
Confidence            88999998843

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.25  E-value=1.5e-06  Score=68.21  Aligned_cols=75  Identities=13%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+.+|||.+.++.+      ...+++|++|.|||.|         +..++|++||+ +.||+..+.+.+  ....+++.
T Consensus        13 ~~~~~lG~~i~~~~~------~~~~~~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   77 (97)
T 1n7e_A           13 RYGGPLGITISGTEE------PFDPIIISSLTKGGLA---------ERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM   77 (97)
T ss_dssp             CTTSCCCEEEECCSS------TTSCCEEEEECTTSHH---------HHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             eCCCCcCEEEEcccC------CCCCEEEEEECCCCHH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            345679999998743      2357999999998754         43333799999 589999998763  44556666


Q ss_pred             cCCceEEEEEEee
Q psy9829         162 AHNCISAQIKRTH  174 (333)
Q Consensus       162 ~g~~v~L~v~R~~  174 (333)
                      .+..+.|.|.|..
T Consensus        78 ~g~~v~l~v~R~~   90 (97)
T 1n7e_A           78 AGETVTLKIKKQT   90 (97)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEeCC
Confidence            7888999998744

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.24  E-value=1e-06  Score=69.33  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.||||.+.+         .+.+++|++|.|||.         |+..++|++||+ +.||+.++.+..  .....++..
T Consensus        18 ~~~glG~~~~~---------~~~gv~V~~V~~~sp---------A~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~   79 (96)
T 2qkv_A           18 AGKELGLSLSP---------NEIGCTIADLIQGQY---------PEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA   79 (96)
T ss_dssp             TTBCCCEEEEE---------CSSSEEEEEECTTSC---------HHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CCCCccEEEEe---------CCCcEEEEEeCCCCh---------HHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            45689999876         136899999999764         454434799999 589999998875  334455667


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      +..+.|.|.|..
T Consensus        80 ~~~v~l~v~R~~   91 (96)
T 2qkv_A           80 NGKVSMEVTRPK   91 (96)
T ss_dssp             SSEEEEEEECCC
T ss_pred             CCcEEEEEEeCC
Confidence            778999998854

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.24  E-value=1.1e-06  Score=72.81  Aligned_cols=79  Identities=14%  Similarity=0.046  Sum_probs=57.6

Q ss_pred             cceeeEEEecccCCCCC---CCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhh
Q psy9829          87 GSTFVGSVLGARGALDL---ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFR  160 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~---~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr  160 (333)
                      ..+|||.+.|+.+....   .+.+.+++|++|.|||.         |+..++|++||+ +.||++.+.+.  .....+++
T Consensus        35 ~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~sp---------A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  105 (123)
T 2iwq_A           35 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSP---------AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR  105 (123)
T ss_dssp             TSCCSEEEEECC---------CCCCSEEEEEECSSSH---------HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCccEEEEeccCccccccccCCCCCEEEEEECCCCh---------HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45899999998875421   12457999999999765         444333799999 58999999995  35667787


Q ss_pred             hcCCceEEEEEEee
Q psy9829         161 IAHNCISAQIKRTH  174 (333)
Q Consensus       161 ~~g~~v~L~v~R~~  174 (333)
                      ..+..++|.|+|..
T Consensus       106 ~~~~~v~l~v~r~~  119 (123)
T 2iwq_A          106 KAGNPVVFMVQSII  119 (123)
T ss_dssp             HCCSSEEEEEECCC
T ss_pred             cCCCeEEEEEEECC
Confidence            77789999998843

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.23  E-value=8.6e-07  Score=70.64  Aligned_cols=71  Identities=8%  Similarity=0.007  Sum_probs=55.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCcc-ccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEM-SFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l-~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ..+|||.+.||.+.      +.+++|++|.|||.|         +..+ +|++||+ +.||+.++.+.+  ..+..++..
T Consensus        28 ~~~~G~~~~gg~~~------~~~~~V~~V~~~spA---------~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~   92 (107)
T 3nfk_A           28 NGRFGFNVKGGYDQ------KMPVIVSRVAPGTPA---------DLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   92 (107)
T ss_dssp             TSCCCEEEEEEGGG------TEEEEEEEECTTSHH---------HHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCG
T ss_pred             CCCCCEEEEccCCC------CCCeEEEEECCCCch---------HHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            46999999998763      357999999998755         4333 3799999 689999999885  445566666


Q ss_pred             CC----ceEEEEEE
Q psy9829         163 HN----CISAQIKR  172 (333)
Q Consensus       163 g~----~v~L~v~R  172 (333)
                      +.    .+.|.|+|
T Consensus        93 ~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           93 CERHSGELMLLVRP  106 (107)
T ss_dssp             GGSBTTBEEEEEEC
T ss_pred             cccCCcEEEEEEEc
Confidence            64    89999976

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=6.2e-07  Score=71.11  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=57.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.+.++.+.+    ++.+++|++|.|||.|         +..+.|++||+ +.||+..+.+.+  ..+.+++..+
T Consensus        21 ~~g~G~~l~~~~~~~----~~~~v~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   87 (104)
T 2djt_A           21 YAGFGLTLGGGRDVA----GDTPLAVRGLLKDGPA---------QRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG   87 (104)
T ss_dssp             SSSCCEEEECCEETT----EECCCEEEEECTTCHH---------HHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTC
T ss_pred             CCCccEEEEeccCCC----CCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            359999999998763    3678999999997754         43223799999 589999999864  4445566678


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        88 ~~v~l~v~R~   97 (104)
T 2djt_A           88 PQLHLVIRRP   97 (104)
T ss_dssp             SEEEEEECCC
T ss_pred             CeEEEEEEEC
Confidence            8899999873

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.21  E-value=2.4e-06  Score=70.15  Aligned_cols=78  Identities=12%  Similarity=0.000  Sum_probs=59.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccC--cchhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNG--VVGSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~g--v~~a~~alr~~-  162 (333)
                      ..+|||.+.++.+++..  .+..++|++|.+||.|         +..+.|++||+ +.||+..+++  ......+|+.. 
T Consensus        26 ~~glG~~l~~~~~~~~~--~~~~~~V~~V~~~spA---------~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   94 (122)
T 1v5q_A           26 VTGFGIQLQGSVFATET--LSSPPLISYIEADSPA---------ERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   94 (122)
T ss_dssp             SSSSCEEEECCSCCSSS--CSSCCEEEEECTTSHH---------HHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred             CCccCEEEecccccCCc--CCCCcEEEEECCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            47999999999776542  3567999999997654         43323799999 5899999988  44556677765 


Q ss_pred             -CCceEEEEEEeec
Q psy9829         163 -HNCISAQIKRTHF  175 (333)
Q Consensus       163 -g~~v~L~v~R~~~  175 (333)
                       +..++|.|.|...
T Consensus        95 ~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           95 ITSKVTLEIEFDVA  108 (122)
T ss_dssp             TTTCEEEEEEEECC
T ss_pred             CCCeEEEEEEECCc
Confidence             6789999998553

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.21  E-value=1.5e-06  Score=67.13  Aligned_cols=68  Identities=12%  Similarity=-0.061  Sum_probs=53.1

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~  164 (333)
                      .+|||.+.+|.+       +.+++|++|.+||.|         +. .+|++||+ +.||+..+.++.  ..+.+++..+.
T Consensus        19 ~~~G~~~~~~~~-------~~gv~V~~V~~~spA---------~~-aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   81 (91)
T 1m5z_A           19 EDFGFSVADGLL-------EKGVYVKNIRPAGPG---------DL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGN   81 (91)
T ss_dssp             SSSSEEEEECTT-------SSCEEEEEECTTSHH---------HH-HTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT
T ss_pred             CCccEEEEeccC-------CCCEEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            489999998754       468999999998765         33 23799999 589999999875  33455666788


Q ss_pred             ceEEEEEE
Q psy9829         165 CISAQIKR  172 (333)
Q Consensus       165 ~v~L~v~R  172 (333)
                      .+.|.|.|
T Consensus        82 ~v~l~v~R   89 (91)
T 1m5z_A           82 KLDLVISR   89 (91)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            89999977

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.19  E-value=2.1e-06  Score=66.33  Aligned_cols=71  Identities=14%  Similarity=0.061  Sum_probs=52.4

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...||||.+.|+.+       +.+++|++|.|||.|         +.. +|++||+ +.+|++++.+.+  .....++..
T Consensus        12 ~~~g~G~~~~~~~~-------~~g~~V~~V~~~spA---------~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~   74 (91)
T 1g9o_A           12 GPNGYGFHLHGEKG-------KLGQYIRLVEPGSPA---------EKA-GLLAGDRLVEVNGENVEKETHQQVVSRIRAA   74 (91)
T ss_dssp             BTTBCCEEEEECTT-------CSSEEEEEECTTSHH---------HHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CCCcccEEEEecCC-------CCCEEEEEECCCCHH---------HHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            35689999998764       368999999997754         443 3799999 589999999864  445566666


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.+.+.|+
T Consensus        75 ~~~~~~~~~~r   85 (91)
T 1g9o_A           75 LNAVRLLVVDP   85 (91)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCcEEEEEEcC
Confidence            66666655543

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.19  E-value=1.3e-06  Score=67.14  Aligned_cols=73  Identities=12%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ....+|||.+.||.+.      +.+++|++|.|||.|         +.. +|++||+ +.+|+..+.+..  ....+++.
T Consensus        10 ~~~~~~G~~l~~g~~~------~~~~~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~   73 (88)
T 2uzc_A           10 VGPAPWGFRLQGGKDF------NMPLTISSLKDGGKA---------AQA-NVRIGDVVLSIDGINAQGMTHLEAQNKIKG   73 (88)
T ss_dssp             ESSSCCCEEEEEEGGG------TEEEEEEEECTTSHH---------HHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             cCCCcccEEEECcCCC------CCCeEEEEECCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3456899999998863      367999999998754         432 3799999 589999999984  44556666


Q ss_pred             cCCceEEEEEEe
Q psy9829         162 AHNCISAQIKRT  173 (333)
Q Consensus       162 ~g~~v~L~v~R~  173 (333)
                      .+..+.|.|.|.
T Consensus        74 ~g~~v~l~v~R~   85 (88)
T 2uzc_A           74 CTGSLNMTLQRE   85 (88)
T ss_dssp             CCSEEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            688899999873

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.18  E-value=1.3e-06  Score=68.95  Aligned_cols=78  Identities=14%  Similarity=0.040  Sum_probs=54.0

Q ss_pred             ceeeEEEecccCCCCC---CCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhh
Q psy9829          88 STFVGSVLGARGALDL---ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRI  161 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~---~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~  161 (333)
                      .+|||.+.|+.+...-   .+.+.+++|++|.|||.|         +..++|++||+ +.||+..+++.  .....+++.
T Consensus        16 ~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA---------~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~   86 (103)
T 2fcf_A           16 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPA---------GKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK   86 (103)
T ss_dssp             CCCCEEEECCCC-------------EEEEEECSSSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4799999998775421   113579999999997754         44323799999 68999999994  455667777


Q ss_pred             cCCceEEEEEEee
Q psy9829         162 AHNCISAQIKRTH  174 (333)
Q Consensus       162 ~g~~v~L~v~R~~  174 (333)
                      .+..++|.|.|..
T Consensus        87 ~~~~v~l~v~r~~   99 (103)
T 2fcf_A           87 AGNPVVFMVQSII   99 (103)
T ss_dssp             CCSSEEEEEECCC
T ss_pred             CCCcEEEEEEECC
Confidence            7778999998843

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.17  E-value=1.4e-06  Score=67.52  Aligned_cols=67  Identities=6%  Similarity=0.095  Sum_probs=51.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ...|||.+.+            ++||++|.|||.|         +..++|++||+ +.||+.++.+.+  .++.+++.++
T Consensus        12 ~~~~G~~~~~------------gv~V~~V~~gspA---------~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~   70 (88)
T 3e17_A           12 NEEYGLRLGS------------QIFVKEMTRTGLA---------TKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR   70 (88)
T ss_dssp             BCCCCEEEEE------------EEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT
T ss_pred             CCCCCEEEeC------------CEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3467777754            7999999997754         44444799999 589999998775  5667888899


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      +.++|.+.+..
T Consensus        71 ~~v~L~v~~~~   81 (88)
T 3e17_A           71 GKLQLVVLRDL   81 (88)
T ss_dssp             TEEEEEECCC-
T ss_pred             CeEEEEEeCCC
Confidence            99999997744

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.14  E-value=1.7e-06  Score=67.12  Aligned_cols=71  Identities=8%  Similarity=-0.050  Sum_probs=54.1

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+.+|||.+.++.        +.+++|++|.|||.         |+...+|++||+ +.||+.++.+++  ..+..|+.
T Consensus        10 ~~~~~lG~~i~~~~--------~~~~~I~~V~~gsp---------A~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~   72 (88)
T 1kwa_A           10 NTDEPMGITLKMNE--------LNHCIVARIMHGGM---------IHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE   72 (88)
T ss_dssp             CSSSCCCEEEECSC--------GGGEEEEEECTTSH---------HHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHH
T ss_pred             CCCCceeEEEEeCC--------CCCEEEEEECCCCH---------HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            34678999999741        35799999999775         454345799999 689999999764  55667777


Q ss_pred             cCCceEEEEEE
Q psy9829         162 AHNCISAQIKR  172 (333)
Q Consensus       162 ~g~~v~L~v~R  172 (333)
                      ....++|.|.|
T Consensus        73 ~~~~v~l~v~r   83 (88)
T 1kwa_A           73 MRGSITFKIVP   83 (88)
T ss_dssp             CCEEEEEEEEC
T ss_pred             CCCcEEEEEEC
Confidence            66688888876

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.14  E-value=7.2e-07  Score=70.41  Aligned_cols=72  Identities=13%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~  164 (333)
                      .||||.+.+|.+.      +.+++|++|.+||.|         +..+.|++||+ +.||+.++.+.+  ....+++..+.
T Consensus        22 ~g~G~~~~~~~~~------~~~~~V~~V~~~spA---------~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   86 (103)
T 1wfv_A           22 KGFGFSIRGGREY------KMDLYVLRLAEDGPA---------IRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGR   86 (103)
T ss_dssp             TSSSBCCEEETTT------TEEEECCCBCTTSHH---------HHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCS
T ss_pred             CcCCEEEeccccC------CCCEEEEEECCCChH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            5899999988653      358999999997754         43323799999 589999999874  44556666788


Q ss_pred             ceEEEEEEee
Q psy9829         165 CISAQIKRTH  174 (333)
Q Consensus       165 ~v~L~v~R~~  174 (333)
                      .+.|.|.|..
T Consensus        87 ~v~l~v~R~~   96 (103)
T 1wfv_A           87 RVRLLLKRGT   96 (103)
T ss_dssp             EECEEEECTT
T ss_pred             eEEEEEEECC
Confidence            8999998743

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.13  E-value=2.9e-06  Score=69.71  Aligned_cols=74  Identities=11%  Similarity=0.005  Sum_probs=56.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..+|||.+.++.+.+.   ++.+++|++|.|||.|         +..++|++||+ +.||++.+.+.+  ....+++.. 
T Consensus        40 ~~~lG~~l~~~~~~~~---g~~gv~V~~V~~gspA---------~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~  107 (121)
T 2kom_A           40 TEGLGFSITSRDVTIG---GSAPIYVKNILPRGAA---------IQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTK  107 (121)
T ss_dssp             TTCCCEEEECCCCSSS---SSCCEEEEEECTTSHH---------HHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             CCcEeEEEEeccCCcC---CCCCEEEEEECCCChH---------HHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence            4589999999876543   5789999999998755         43323799999 589999998863  455666664 


Q ss_pred             -CCceEEEEEE
Q psy9829         163 -HNCISAQIKR  172 (333)
Q Consensus       163 -g~~v~L~v~R  172 (333)
                       +..+.|.|.|
T Consensus       108 ~g~~v~l~v~R  118 (121)
T 2kom_A          108 MEGTVSLLVFR  118 (121)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CCCEEEEEEEe
Confidence             6789999987

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.13  E-value=8.3e-07  Score=80.73  Aligned_cols=59  Identities=17%  Similarity=0.294  Sum_probs=53.9

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCce-EEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL-SLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v-~L~V~R~~  283 (333)
                      ++||..|.++   ++|++.| |++||+|++|||+.+.+++++++..+|+...+.+ .|+|.|+.
T Consensus        34 gv~V~~V~~g---SpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~V~R~g   93 (216)
T 2krg_A           34 GQFIRSVDPD---SPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET   93 (216)
T ss_dssp             SCBEEEECTT---SHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEECCHHH
T ss_pred             CeEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEEECC
Confidence            6999999999   8888877 9999999999999999999999999999888888 88887753

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.12  E-value=1.8e-06  Score=69.74  Aligned_cols=74  Identities=12%  Similarity=0.054  Sum_probs=57.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.+|.+.+.     .+++|++|.+||.|         +..++|++||+ +.||+..+.+.+  ....+++..+
T Consensus        27 ~~glG~~l~~~~~~~~-----~gv~V~~V~~~spA---------~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   92 (116)
T 2dm8_A           27 RSGLGLSIVGGKDTPL-----NAIVIHEVYEEGAA---------ARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP   92 (116)
T ss_dssp             SSCCCCCCBCCTTSSC-----SSEECCCCCSSSHH---------HHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC
T ss_pred             CCcccEEEeCCCCCCc-----CCEEEEEECCCChH---------HhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4689999999887653     58999999998755         43333799999 589999999864  4455666677


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..++|.|.|..
T Consensus        93 ~~v~l~v~R~~  103 (116)
T 2dm8_A           93 QKVRLVVYRDE  103 (116)
T ss_dssp             SEEEEEEECCS
T ss_pred             CeEEEEEEeCC
Confidence            88999998743

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.11  E-value=2.6e-06  Score=71.92  Aligned_cols=76  Identities=13%  Similarity=0.044  Sum_probs=56.8

Q ss_pred             ceeeEEEecccCCCC----CC--CCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhh
Q psy9829          88 STFVGSVLGARGALD----LA--NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQV  158 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~----~~--~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~a  158 (333)
                      .+|||.+.||.|...    |.  +.+.+++|++|.|||.|         +.. +|++||+ +.||+..+++++  ..+.+
T Consensus        38 ~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA---------~~a-GL~~GD~I~~vng~~v~~~~~~~~~~~  107 (139)
T 2vz5_A           38 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPA---------EIA-GLQIGDKIMQVNGWDMTMVTHDQARKR  107 (139)
T ss_dssp             EECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             ccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHH---------HHC-CCCCCCEEEEECCEEcCCCCHHHHHHH
Confidence            389999999998532    21  24689999999997754         433 3799999 589999999753  44556


Q ss_pred             hhh-cCCceEEEEEEe
Q psy9829         159 FRI-AHNCISAQIKRT  173 (333)
Q Consensus       159 lr~-~g~~v~L~v~R~  173 (333)
                      ++. .+..+.|.|.|.
T Consensus       108 l~~~~g~~v~l~v~R~  123 (139)
T 2vz5_A          108 LTKRSEEVVRLLVTRQ  123 (139)
T ss_dssp             HCCTTCSEEEEEEEEC
T ss_pred             HHhCCCCEEEEEEEEC
Confidence            654 457799999883

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.10  E-value=3.2e-06  Score=67.26  Aligned_cols=70  Identities=13%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g  163 (333)
                      +.+|||.+.+|.+.      +.+++|++|.|||.|         +. .+|++||+ +.||+..+++.  ...+.+++. +
T Consensus        26 ~~~lG~~~~~~~~~------~~g~~V~~V~~~spA---------~~-aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~   88 (104)
T 1wi2_A           26 GAQLGFNIRGGKAS------QLGIFISKVIPDSDA---------HR-AGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-A   88 (104)
T ss_dssp             TCCCSEEEECCSSS------CCCCEEEEECTTSHH---------HH-HTCCTTCEEEEETTEECSSCCHHHHHHHHHH-S
T ss_pred             CCCccEEEEcccCC------CCCEEEEEeCCCChH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhC-C
Confidence            46999999987643      468999999998754         43 34799999 68999999995  355566776 7


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|+|.
T Consensus        89 ~~v~l~v~r~   98 (104)
T 1wi2_A           89 REISMRVRFF   98 (104)
T ss_dssp             SSEEEEEECC
T ss_pred             CEEEEEEEEC
Confidence            8899999873

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.10  E-value=2e-06  Score=67.64  Aligned_cols=57  Identities=21%  Similarity=0.377  Sum_probs=48.9

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  284 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~  284 (333)
                      |++|..|.++   ++|++ | |++||+|++|||+.+.+  ..+...+|+..  .+.+.|+|.|+..
T Consensus         2 Gv~V~~V~~~---spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~   60 (91)
T 2kjp_A            2 GIYASSVVEN---MPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEK   60 (91)
T ss_dssp             CSSCCCCCCS---SCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSC
T ss_pred             ceEEEEECCC---ChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCE
Confidence            4778999999   88887 5 99999999999988764  57888999876  6789999999864

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=2.8e-06  Score=66.24  Aligned_cols=71  Identities=11%  Similarity=0.092  Sum_probs=54.6

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||.+.||.+.      +.+++|++|.|||.|         +. .+|++||+ +.||+..+.+..  .....++..
T Consensus        16 ~~~~~G~~l~gg~~~------~~~v~V~~V~~~spA---------~~-aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~   79 (94)
T 2eeg_A           16 GPSPWGFRLVGGRDF------SAPLTISRVHAGSKA---------AL-AALCPGDLIQAINGESTELMTHLEAQNRIKGC   79 (94)
T ss_dssp             CSSCCSCCEECCTTT------TSCCEECCCCSSSHH---------HH-TTCCTTCEEEEETTEETTTCCHHHHHHHHHTC
T ss_pred             CCCccCEEEECccCC------CCCEEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            346899999998864      457899999998755         32 24799999 589999998873  334455567


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..+.|.|.|
T Consensus        80 g~~v~l~v~R   89 (94)
T 2eeg_A           80 HDHLTLSVSS   89 (94)
T ss_dssp             CSCEEEEEEC
T ss_pred             CCeEEEEEEe
Confidence            7889999977

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.10  E-value=5.7e-06  Score=68.23  Aligned_cols=67  Identities=12%  Similarity=0.054  Sum_probs=52.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||+|.++.         .+.+|.+|.++           + .+.+|++||+ +.||+.+|.+++  +++++|+.+ 
T Consensus        22 ~~G~GFsI~~~~---------~g~~V~~I~~~-----------~-~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~   80 (113)
T 3soe_A           22 PKGFGFAIADSP---------TGQKVKMILDS-----------Q-WCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP   80 (113)
T ss_dssp             TTBSSEEEEEET---------TEEEEEEESCG-----------G-GSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             CCcccEEEeCCC---------CCcEEEEecCh-----------H-HhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            569999996542         25789999882           1 2356799999 689999999996  678888875 


Q ss_pred             -CCceEEEEEEee
Q psy9829         163 -HNCISAQIKRTH  174 (333)
Q Consensus       163 -g~~v~L~v~R~~  174 (333)
                       +..++|.|+|..
T Consensus        81 ~G~~v~L~V~R~g   93 (113)
T 3soe_A           81 VGADVPLLILRGG   93 (113)
T ss_dssp             TTCEEEEEEEESS
T ss_pred             CCCEEEEEEEECC
Confidence             668999999843

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.10  E-value=2.7e-06  Score=66.66  Aligned_cols=76  Identities=12%  Similarity=0.017  Sum_probs=53.7

Q ss_pred             cceeeEEEec-ccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc
Q psy9829          87 GSTFVGSVLG-ARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA  162 (333)
Q Consensus        87 G~~~g~~i~g-g~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~  162 (333)
                      +.+|||+|.| |.+...-...+.+++|++|.+||.|         +.. +|++||+ +.+|+..+++.  .....+++..
T Consensus        15 ~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA---------~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~   84 (96)
T 2ego_A           15 NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPA---------QLA-GLTPGDTIASVNGLNVEGIRHREIVDIIKAS   84 (96)
T ss_dssp             TCCCSEEEEEEEC-------CCEEEEEEEECTTCHH---------HHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred             CCCccEEEEeccccccCCCCCCCCeEEEEECCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4699999998 4332211113569999999997754         443 3799999 58999999996  3556677777


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..++|.|.|
T Consensus        85 ~~~v~l~v~~   94 (96)
T 2ego_A           85 GNVLRLETLY   94 (96)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCeEEEEEEE
Confidence            7788888865

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.09  E-value=2.8e-06  Score=69.02  Aligned_cols=72  Identities=11%  Similarity=0.030  Sum_probs=55.4

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.+.++.+       +.+++|++|.|||.|         +..+.|++||+ +.||+..+.+..  .++.+++..+
T Consensus        24 ~~glG~~l~~~~~-------~~gv~V~~V~~~spA---------~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   87 (119)
T 1tp5_A           24 STGLGFNIVGGED-------GEGIFISFILAGGPA---------DLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   87 (119)
T ss_dssp             TSCCCEEEEECGG-------GCCEEEEEECTTSHH---------HHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCCccEEEecCCC-------CCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4689999998764       368999999998755         43223799999 589999999885  3444556678


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..+.|.|.|+.
T Consensus        88 ~~v~l~v~r~~   98 (119)
T 1tp5_A           88 QTVTIIAQYKP   98 (119)
T ss_dssp             SEEEEEEEECH
T ss_pred             CeEEEEEEECC
Confidence            88999998844

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.09  E-value=1.1e-06  Score=86.24  Aligned_cols=62  Identities=19%  Similarity=0.355  Sum_probs=56.3

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPR  285 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~~  285 (333)
                      ++||.+|.++   ++|++.|+|++||+|++|||+++.+++|.++..+|+..+  ..+.|+|.|+...
T Consensus       233 g~~V~~V~~g---spA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~  296 (388)
T 3suz_A          233 TVILANMMNG---GPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPV  296 (388)
T ss_dssp             CCBCCCCCCS---SHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSC
T ss_pred             CEEEEeeCCC---CHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCcccccccccccc
Confidence            5899999999   999999999999999999999999999999999999864  4599999987543

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.08  E-value=1.7e-06  Score=67.55  Aligned_cols=73  Identities=11%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~  161 (333)
                      ....+|||.+.+|.+.      +.+++|++|.|||.         |+. .+|++||+ +.+|+..++++  .....+++.
T Consensus        13 ~~~~~lG~~l~~g~~~------~~g~~V~~V~~~sp---------A~~-aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~   76 (94)
T 1vb7_A           13 AGPAPWGFRISGGRDF------HTPIIVTKVTERGK---------AEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQ   76 (94)
T ss_dssp             CSSSCCSBCCEEETTT------TEEEECCCBCTTSS---------HHH-HTCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             cCCCCccEEEecccCC------CCCeEEEEECCCCH---------HHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4456899999998762      46899999999764         453 45899999 58999999998  455566776


Q ss_pred             cCCceEEEEEEe
Q psy9829         162 AHNCISAQIKRT  173 (333)
Q Consensus       162 ~g~~v~L~v~R~  173 (333)
                      .+..+.|.|.|.
T Consensus        77 ~~~~v~l~v~R~   88 (94)
T 1vb7_A           77 SASPLRLQLDRS   88 (94)
T ss_dssp             CCSSEEEEEECC
T ss_pred             CCCcEEEEEEEC
Confidence            668899999884

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.35  E-value=4.6e-07  Score=73.91  Aligned_cols=72  Identities=11%  Similarity=0.054  Sum_probs=54.4

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+.+|||.+.||.+.      +.+++|++|.|||         ||+...+|++||+ +.||+.++.+.+  ....+++.
T Consensus        36 ~~~~glG~~l~~g~~~------~~gv~V~~V~~~s---------pA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~  100 (112)
T 2lob_A           36 EDHEGLGISITGGKEH------GVPILISEIHPGQ---------PADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ  100 (112)
Confidence            3457999999998763      3579999999976         4554345799999 589999997753  55566776


Q ss_pred             cCCceEEEEE
Q psy9829         162 AHNCISAQIK  171 (333)
Q Consensus       162 ~g~~v~L~v~  171 (333)
                      .+..++|.|.
T Consensus       101 ~~~~v~l~V~  110 (112)
T 2lob_A          101 QRGEIEFEVV  110 (112)
Confidence            7777877764

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.07  E-value=2.9e-06  Score=66.21  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g  163 (333)
                      ..+|||.+.+..+.+    .+.+++|++|.|||.|         +.. +|++||+ +.+|+..+.+.  .....+++..+
T Consensus        13 ~~~~G~~l~~~~~~~----~~~g~~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   78 (96)
T 2v90_A           13 PQGFGFLLREEKGLD----GRPGQFLWEVDPGLPA---------KKA-GMQAGDRLVAVAGESVEGLGHEETVSRIQGQG   78 (96)
T ss_dssp             TTBSCEEEEEEECTT----SCEEEEEEEECTTSHH---------HHT-TCCTTEEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CCcccEEEEeccCCC----CCCCeEEEEECCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            459999999865432    3579999999997754         443 3799999 58999999995  35556676678


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        79 ~~v~l~v~r~   88 (96)
T 2v90_A           79 SCVSLTVVDP   88 (96)
T ss_dssp             TEEEEEEECC
T ss_pred             CEEEEEEECC
Confidence            8899999873

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.07  E-value=7.8e-06  Score=70.12  Aligned_cols=59  Identities=32%  Similarity=0.444  Sum_probs=51.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC-ceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~-~v~L~V~R~  282 (333)
                      .++||.++.++   ++|++.| |++||+|++|||+.+.+++++.+..+++...+ .+.|+|.|.
T Consensus        27 ~g~~V~~v~~~---spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~   86 (166)
T 1w9e_A           27 NGIFVQLVQAN---SPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR   86 (166)
T ss_dssp             TEEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             CCEEEEEECCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC
Confidence            57999999999   8888776 99999999999999999999888899987654 899999443

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.06  E-value=3.3e-06  Score=65.73  Aligned_cols=62  Identities=8%  Similarity=-0.047  Sum_probs=50.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||++.+|             +|++|.+||.         |+.. +|++||+ +.||+.+|.+.+  .+++.||.++
T Consensus        15 ~g~~Gf~i~~g-------------~I~~v~~gsp---------A~~a-Gl~~GD~Il~VNG~~v~~~~~~evv~llr~~g   71 (82)
T 1r6j_A           15 TGHVGFIFKNG-------------KITSIVKDSS---------AARN-GLLTEHNICEINGQNVIGLKDSQIADILSTSG   71 (82)
T ss_dssp             TSCCCEEEETT-------------EEEEECTTSH---------HHHH-TCCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CCCeEEEEECC-------------EEEEecCCCH---------HHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence            34799999865             3899999764         5554 3799999 689999999986  6677889899


Q ss_pred             CceEEEEE
Q psy9829         164 NCISAQIK  171 (333)
Q Consensus       164 ~~v~L~v~  171 (333)
                      ..|+|.|.
T Consensus        72 ~~V~L~v~   79 (82)
T 1r6j_A           72 TVVTITIM   79 (82)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEE
Confidence            99999885

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.05  E-value=6e-06  Score=64.93  Aligned_cols=58  Identities=19%  Similarity=0.383  Sum_probs=49.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++ | |++||+|++|||+...+  ..+...+|+..  .+.+.|.|.|+..
T Consensus         5 ~Gv~V~~V~~~---spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~   64 (94)
T 2kl1_A            5 KGVYVMSVLPN---MPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRK   64 (94)
T ss_dssp             CCEECCCCCTT---STTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTE
T ss_pred             CcEEEEEECCC---ChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            46899999999   88887 5 99999999999988765  57888888875  6799999999753

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=2e-06  Score=68.12  Aligned_cols=72  Identities=13%  Similarity=0.137  Sum_probs=55.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc-chhhhhhhhcCC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV-VGSWQVFRIAHN  164 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv-~~a~~alr~~g~  164 (333)
                      ..+|||.+.||.+.+      .+++|++|.|||.|         +...+|++||+ +.+|+..+.+. ...+.+++..+.
T Consensus        20 ~~~~G~~~~gg~~~~------~~v~V~~V~~~spA---------~~agGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   84 (100)
T 2edp_A           20 GAPWGFTLKGGLEHC------EPLTVSKIEDGGKA---------ALSQKMRTGDELVNINGTPLYGSRQEALILIKGSFR   84 (100)
T ss_dssp             CSCCCCCEEEEGGGT------EEEEECCCCTTSHH---------HHHTSCCTTCEEEEETTEECCSCSHHHHHHHHTCCS
T ss_pred             CCCcCEEEeccCCCC------CCeEEEEECCCCHH---------HHcCCCCCCCEEEEECCEEccchHHHHHHHHHhCCC
Confidence            458999999987643      47999999997754         43325799999 58999999885 334556666778


Q ss_pred             ceEEEEEEe
Q psy9829         165 CISAQIKRT  173 (333)
Q Consensus       165 ~v~L~v~R~  173 (333)
                      .+.|.|.|.
T Consensus        85 ~v~l~v~R~   93 (100)
T 2edp_A           85 ILKLIVRRR   93 (100)
T ss_dssp             SCEEEEEEC
T ss_pred             eEEEEEEeC
Confidence            899999884

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.04  E-value=4.3e-06  Score=65.59  Aligned_cols=80  Identities=20%  Similarity=0.191  Sum_probs=58.1

Q ss_pred             cccccceeeEEEecccCCCCCC-CCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhh
Q psy9829          83 LFPVGSTFVGSVLGARGALDLA-NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQV  158 (333)
Q Consensus        83 ~qE~G~~~g~~i~gg~d~p~~~-~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~a  158 (333)
                      +...+.+|||.+.++.+.+.-. ....+++|++|.|||.|         +.. +|++||+ +.+|+..+.+.+  ..+.+
T Consensus         8 l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~   77 (99)
T 3khf_A            8 IHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPA---------QEA-GLRAGDLITHINGESVLGLVHMDVVEL   77 (99)
T ss_dssp             EEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3445779999999887543210 01247899999997754         433 3799999 589999999764  55667


Q ss_pred             hhhcCCceEEEEEE
Q psy9829         159 FRIAHNCISAQIKR  172 (333)
Q Consensus       159 lr~~g~~v~L~v~R  172 (333)
                      ++..+..+.|.|.|
T Consensus        78 l~~~g~~v~l~v~r   91 (99)
T 3khf_A           78 LLKSGNKISLRTTA   91 (99)
T ss_dssp             HHHSCSEEEEEEEC
T ss_pred             HhcCCCEEEEEEEE
Confidence            77788899999987

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.03  E-value=2e-06  Score=68.30  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||.+.||.+.      +.+++|++|.|||.|         +.. +|++||+ +.+|+..+.++.  ....+++..
T Consensus        13 ~~~~~G~~l~gg~~~------~~~v~V~~V~~~spA---------~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~~   76 (103)
T 1wf7_A           13 GPAPWGFRLQGGKDF------NMPLTISSLKDGGKA---------SQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIKAC   76 (103)
T ss_dssp             SSSCCSCCEEEETTT------TEEEEECCCCTTCHH---------HHT-TCCTTCBEEEETTEECSSCCHHHHHHHHHHC
T ss_pred             CCCccCEEEeccccC------CCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            457899999999863      356999999998765         332 3799999 589999999873  444566667


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|.
T Consensus        77 g~~v~l~v~R~   87 (103)
T 1wf7_A           77 TGSLNMTLQRA   87 (103)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCeEEEEEEeC
Confidence            88899999873

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.03  E-value=8.3e-06  Score=66.15  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=50.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc---CCceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS---KEKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s---~~~v~L~V~R  281 (333)
                      .+..|..+.++   ++|++- .|++||+|++|||+.....+++|....|+.+   +..|.|.|+-
T Consensus        39 ~~~~I~~V~~g---SpA~~A-GL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~   99 (101)
T 3qik_A           39 KAVVVKSVQRG---SLAEVA-GLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT   99 (101)
T ss_dssp             TEEEEEEECTT---SHHHHH-TCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCC---CHHHHc-CCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence            36789999999   766554 5999999999999999999999999999974   8889998863

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=4.4e-06  Score=65.70  Aligned_cols=66  Identities=11%  Similarity=0.140  Sum_probs=51.7

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~  164 (333)
                      .+|||.+.|          +.+++|++|.|||         ||+  .+|++||+ +.||+..+.+.+  .++..++..+.
T Consensus        21 ~~~G~~l~~----------~~~~~V~~V~~~s---------pA~--agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~   79 (96)
T 2edv_A           21 QDYGFHISE----------SLPLTVVAVTAGG---------SAH--GKLFPGDQILQMNNEPAEDLSWERAVDILREAED   79 (96)
T ss_dssp             CSCSBCCCS----------SSSCBCCCBCSSS---------SST--TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSS
T ss_pred             CcccEEEec----------CCCeEEEEECCCC---------chh--hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            378888875          3579999999965         564  56799999 689999998874  34456666788


Q ss_pred             ceEEEEEEee
Q psy9829         165 CISAQIKRTH  174 (333)
Q Consensus       165 ~v~L~v~R~~  174 (333)
                      .++|.|.|..
T Consensus        80 ~v~l~v~R~~   89 (96)
T 2edv_A           80 SLSITVVRCT   89 (96)
T ss_dssp             CEEEEEEECC
T ss_pred             eEEEEEEECC
Confidence            9999998844

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.02  E-value=2.8e-06  Score=75.04  Aligned_cols=70  Identities=11%  Similarity=0.047  Sum_probs=56.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.||||.+.||.+.      +.++||++|.|||.|         +..+ |++||+ +.||+..+.+++  ..+.+++. +
T Consensus        95 ~~~lG~~i~~~~~~------~~~~~V~~V~~gspA---------~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~  157 (192)
T 3k1r_A           95 PEGLGLSVRGGLEF------GCGLFISHLIKGGQA---------DSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-E  157 (192)
T ss_dssp             TTCCCEEEEEEGGG------TEEEEEEEECTTSHH---------HHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-S
T ss_pred             CCceeEEEEccccc------CCCEEEEEECCCChH---------HHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-C
Confidence            57999999998752      468999999998755         4333 799999 689999999964  55566666 8


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|+|.
T Consensus       158 ~~v~l~v~r~  167 (192)
T 3k1r_A          158 KTVSIKVRHI  167 (192)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEC
Confidence            8899999884

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.02  E-value=1.2e-06  Score=77.58  Aligned_cols=80  Identities=14%  Similarity=0.044  Sum_probs=61.0

Q ss_pred             CCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhccc
Q psy9829           6 DSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRVLF   84 (333)
Q Consensus         6 ~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~~q   84 (333)
                      ....+.+.|+.+++++++++|++||||++.++...++.....|.+||+.|||.+.++ +++.|.+++.+.+..|.++...
T Consensus        79 ~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~  158 (208)
T 3tau_A           79 EYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKK  158 (208)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHH
T ss_pred             EEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            344567889999999999999999999999999999888888999999999987766 6777776766777777766654


Q ss_pred             c
Q psy9829          85 P   85 (333)
Q Consensus        85 E   85 (333)
                      |
T Consensus       159 e  159 (208)
T 3tau_A          159 E  159 (208)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.00  E-value=4.9e-06  Score=64.60  Aligned_cols=71  Identities=8%  Similarity=0.048  Sum_probs=53.8

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~  162 (333)
                      .+.+|||.+.++.+.       .+++|+.|.|||.|         +.. +|++||+ +.||++++++.  .....+++..
T Consensus        14 ~~~~~G~~l~~~~~~-------~~~~V~~v~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~   76 (95)
T 3r68_A           14 GSNGYGFYLRAGPEQ-------KGQIIKDIEPGSPA---------EAA-GLKNNDLVVAVNGKSVEALDHDGVVEMIRKG   76 (95)
T ss_dssp             BTTBCSCEEEEC--C-------CSEEEECCCTTSHH---------HHH-TCCTTEEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CCCcccEEEEecCCC-------CCEEEEEECCCCHH---------HHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            356899999875443       58999999997754         443 3799999 68999999998  4566777777


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.+.+.|+
T Consensus        77 ~~~~~~~~~r~   87 (95)
T 3r68_A           77 GDQTTLLVLDK   87 (95)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCeEEEEEECC
Confidence            88888777664

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=97.98  E-value=6.7e-06  Score=62.42  Aligned_cols=66  Identities=12%  Similarity=0.063  Sum_probs=50.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g  163 (333)
                      ..||||.+.++          .+++|++|.+||.|         +.. +|++||+ +.+|+..+++.  .....+++..+
T Consensus        12 ~~g~G~~~~~~----------~~~~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   71 (83)
T 2kv8_A           12 RAGYGFTLSGQ----------APCVLSCVMRGSPA---------DFV-GLRAGDQILAVNEINVKKASHEDVVKLIGKCS   71 (83)
T ss_dssp             SSCCSCBCCCS----------SSCBCCBCCTTSTT---------TTT-TCCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred             CCcccEEEEcC----------CCeEEEEeCCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            35788887652          36999999997754         443 3799999 58999999998  35556666677


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..++|.|.|
T Consensus        72 ~~v~l~v~R   80 (83)
T 2kv8_A           72 GVLHMVIAE   80 (83)
T ss_dssp             SCEEEEEEC
T ss_pred             CeEEEEEEc
Confidence            789999987

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=97.97  E-value=5.9e-06  Score=65.92  Aligned_cols=72  Identities=11%  Similarity=-0.005  Sum_probs=54.5

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr  160 (333)
                      ...+.+|||.+.+..        +.+++|++|.|||.|         +..++|++||+ +.||+.++.++  .....+++
T Consensus        20 K~~~~~lG~~l~~~~--------~~gv~V~~V~~gspA---------~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~   82 (97)
T 2ejy_A           20 KVTEEPMGICLKLNE--------KQSCTVARILHGGMI---------HRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK   82 (97)
T ss_dssp             ECSSSCCSEEEEECT--------TCCEEEEEECSSSHH---------HHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHH
T ss_pred             eCCCCCeeEEEEeCC--------CCCEEEEEeCCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            344678999998532        368999999997754         54334799999 58999999984  46667777


Q ss_pred             hcCCceEEEEEE
Q psy9829         161 IAHNCISAQIKR  172 (333)
Q Consensus       161 ~~g~~v~L~v~R  172 (333)
                      ..+..++|.|.+
T Consensus        83 ~~~~~v~L~V~~   94 (97)
T 2ejy_A           83 ETKGMISLKVIP   94 (97)
T ss_dssp             HCCEEEEEEEEC
T ss_pred             cCCCeEEEEEEE
Confidence            777788888864

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=97.97  E-value=1.8e-05  Score=60.61  Aligned_cols=68  Identities=10%  Similarity=0.114  Sum_probs=50.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh--
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI--  161 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~--  161 (333)
                      ..||||.+.++.       ++.+++|+.+ +||         ||+  .+|++||+ +.||+..+++.+  ..+.+++.  
T Consensus        13 ~~g~G~~~~~~~-------~~~~~~v~~v-~~s---------pA~--aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   73 (88)
T 3bpu_A           13 PMGFGFTIADSP-------GGGGQRVKQI-VDS---------PRS--RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESP   73 (88)
T ss_dssp             TTBSSCEEEECT-------TSSSEEEEEC-CC-----------CC--TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCceeEEEEecC-------CCCcEEEEEe-cCC---------hhH--hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Confidence            468999998653       2468999997 866         455  35899999 589999999873  45556664  


Q ss_pred             cCCceEEEEEEe
Q psy9829         162 AHNCISAQIKRT  173 (333)
Q Consensus       162 ~g~~v~L~v~R~  173 (333)
                      .+..++|.|.|.
T Consensus        74 ~g~~v~l~v~R~   85 (88)
T 3bpu_A           74 KGSEVTLLVQRQ   85 (88)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCCEEEEEEEeC
Confidence            467899999874

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.95  E-value=3.4e-06  Score=67.57  Aligned_cols=71  Identities=10%  Similarity=0.057  Sum_probs=54.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.++.+       +.+++|++|.+||.|         +..++|++||+ +.||++.+.+.+  ....+++..+
T Consensus        25 ~~glG~~l~~~~~-------~~gv~V~~V~~~s~A---------~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~   88 (113)
T 1um7_A           25 STGLGFNIVGGED-------GEGIFVSFILAGGPA---------DLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG   88 (113)
T ss_dssp             SSCSSBCCBCCST-------TCCCBCCCBCSSSHH---------HHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCC
T ss_pred             CCcccEEEEeccC-------CCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4689999998764       468999999998755         43223799999 689999999874  3344556678


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        89 ~~v~l~v~r~   98 (113)
T 1um7_A           89 QSVTIVAQYR   98 (113)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEEEEEEC
Confidence            8899999874

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.94  E-value=4.8e-06  Score=64.95  Aligned_cols=70  Identities=11%  Similarity=-0.013  Sum_probs=53.1

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeec-cCcchhhhhhhhc
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLH-NGVVGSWQVFRIA  162 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv-~gv~~a~~alr~~  162 (333)
                      ..+.+|||.+.+         .+.+++|++|.|||.         |+....|++||+ +.||+..+ ........+++..
T Consensus        15 ~~~~~lG~~i~~---------~~~~v~V~~V~~~sp---------A~~ag~L~~GD~I~~ing~~v~~~~~~~~~~l~~~   76 (91)
T 2e7k_A           15 TAGEHLGVTFRV---------EGGELVIARILHGGM---------VAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNA   76 (91)
T ss_dssp             CTTCCCCEEEEE---------SSSSEEEEEECSSSH---------HHHHCCCCTTCEEEEETTEECTTCHHHHHHHHHTC
T ss_pred             CCCCcEeEEEEe---------cCCCEEEEEECCCCH---------HHHcCCCCCCCEEEEECCEECCCCHHHHHHHHHcC
Confidence            346799999987         146899999999765         454334699999 68999999 3334556677777


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..+.|.|.|
T Consensus        77 ~~~v~l~v~~   86 (91)
T 2e7k_A           77 SGSVILKILS   86 (91)
T ss_dssp             CSSBCEEEEC
T ss_pred             CCeEEEEEEE
Confidence            7788898876

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=97.93  E-value=9.4e-06  Score=64.40  Aligned_cols=71  Identities=10%  Similarity=0.049  Sum_probs=55.3

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.+.++.       ++.+++|++|.|||.|         +.. +|++||+ +.||+..+.+..  ....+++..
T Consensus        11 ~~~~~G~~l~~~~-------~~~g~~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~   73 (106)
T 3ngh_A           11 EGQNYGFFLRIEK-------DTDGHLIRVIEEGSPA---------EKA-GLLDGDRVLRINGVFVDKEEHAQVVELVRKS   73 (106)
T ss_dssp             TTCCCCCEEECCT-------TCCSCEEECCCTTSHH---------HHT-TCCTTCEEEEETTEECTTSCHHHHHHHHHHT
T ss_pred             CCCeeCEEEEEEe-------CCCCEEEEEeCCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3567888887653       3468999999997754         443 3799999 589999999986  566777778


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..++|.|.|.
T Consensus        74 g~~v~l~v~r~   84 (106)
T 3ngh_A           74 GNSVTLLVLDG   84 (106)
T ss_dssp             TTEEEEEEECH
T ss_pred             CCEEEEEEEEC
Confidence            88999999873

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=97.93  E-value=1.4e-05  Score=61.89  Aligned_cols=69  Identities=9%  Similarity=-0.004  Sum_probs=51.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.+.+.          .+++|++|.+||.|         +. .+|++||+ +.||+..+.+.+  ....+++..+
T Consensus        13 ~~g~G~~l~~~----------~~~~V~~V~~~spA---------~~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   72 (91)
T 2f5y_A           13 KDGFGFTICCD----------SPVRVQAVDSGGPA---------ER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCP   72 (91)
T ss_dssp             TTBTSEEEECS----------SSCEEEEECTTSHH---------HH-HTCCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             CCCccEEEecC----------CCEEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35788888642          35899999998755         33 23799999 589999998863  4455666667


Q ss_pred             CceEEEEEEeec
Q psy9829         164 NCISAQIKRTHF  175 (333)
Q Consensus       164 ~~v~L~v~R~~~  175 (333)
                      ..+.|.|.|..+
T Consensus        73 ~~v~l~v~R~~~   84 (91)
T 2f5y_A           73 SEIILLVWRMVP   84 (91)
T ss_dssp             SEEEEEEEECC-
T ss_pred             CeEEEEEEeCCC
Confidence            789999988543

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.93  E-value=2.7e-06  Score=70.13  Aligned_cols=58  Identities=9%  Similarity=0.005  Sum_probs=46.1

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCCceEEEEEEe
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHNCISAQIKRT  173 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~~v~L~v~R~  173 (333)
                      .+.+++|++|.|||.|         +.. +|++||+ +.||++++.+.+  ..+.+|+..+..++|.|.|.
T Consensus        59 ~~~gv~V~~V~~~spA---------~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~  119 (126)
T 2yuy_A           59 PMDTIFVKQVKEGGPA---------FEA-GLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPK  119 (126)
T ss_dssp             CCCCCCBCCCCSSSHH---------HHH-TCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCC
T ss_pred             CCCCEEEEEECCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence            4678999999997754         433 3799999 699999998664  55667777788999999874

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.92  E-value=1.5e-05  Score=62.88  Aligned_cols=71  Identities=8%  Similarity=0.050  Sum_probs=54.1

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||.+.++.       ++.+++|++|.+||.         |+.. +|++||+ +.+|+..+.+..  ....+++..
T Consensus        15 ~~~g~G~~l~~~~-------~~~g~~V~~V~~~sp---------A~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~   77 (102)
T 2d90_A           15 GSNGYGFYLRAGP-------EQKGQIIKDIEPGSP---------AEAA-GLKNNDLVVAVNGKSVEALDHDGVVEMIRKG   77 (102)
T ss_dssp             CSSSSSCEEEECS-------SSSSEEEECCCTTST---------TTTT-TCCTTCEEEEESSCBCTTSCHHHHHHHHHHS
T ss_pred             CCCCccEEEEeec-------CCCCEEEEEECCCCH---------HHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3458999998743       246899999999764         4543 3799999 589999998874  445566667


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|+
T Consensus        78 g~~v~l~v~r~   88 (102)
T 2d90_A           78 GDQTTLLVLDK   88 (102)
T ss_dssp             TTEEEEEECST
T ss_pred             CCEEEEEEEEC
Confidence            88899999773

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.91  E-value=2.3e-06  Score=71.63  Aligned_cols=70  Identities=11%  Similarity=0.025  Sum_probs=53.3

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-  161 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-  161 (333)
                      ...||||.+.+         .+.+++|++|.+||.         |+..++|++||+ +.||+..+.+.+  ..+.+|+. 
T Consensus        36 ~~~glG~~i~~---------~~~~v~V~~V~~gsp---------A~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~   97 (126)
T 1wif_A           36 GNLGLGLVVIQ---------NGPYLQISHLINKGA---------AASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI   97 (126)
T ss_dssp             CTTCCCCCEEE---------ETTEEEECCCCTTSS---------GGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSC
T ss_pred             CCceEeEEEEc---------CCCcEEEEEECCCCH---------HHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence            35689999886         246899999999764         554444799999 689999997653  55667765 


Q ss_pred             -cCCceEEEEEEe
Q psy9829         162 -AHNCISAQIKRT  173 (333)
Q Consensus       162 -~g~~v~L~v~R~  173 (333)
                       .+..++|.|.|.
T Consensus        98 ~~G~~v~l~V~R~  110 (126)
T 1wif_A           98 TIGTVLQIKAYRG  110 (126)
T ss_dssp             CSSCEEEEEEESS
T ss_pred             CCCCEEEEEEEEC
Confidence             467799999884

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.90  E-value=3.4e-06  Score=67.00  Aligned_cols=75  Identities=13%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr  160 (333)
                      .....+|||.+.+|.|.      +.+++|++|.|||.         |+. .+|++||+ +.+|+..+.++  .....+++
T Consensus        11 ~~~~~~lG~~l~~g~~~------~~~~~V~~V~~~sp---------A~~-aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   74 (103)
T 1v5l_A           11 LPGPAPWGFRLSGGIDF------NQPLVITRITPGSK---------AAA-ANLCPGDVILAIDGFGTESMTHADAQDRIK   74 (103)
T ss_dssp             EESSSCCSBCCEEETTT------TEEEECSCBCTTST---------TGG-GTCCTTCBEEEETTEECSSCCHHHHHHHHT
T ss_pred             EcCCCCcCEEEeccccC------CCCeEEEEECCCCH---------HHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34456899999988753      36899999999764         443 34799999 68999999994  45566777


Q ss_pred             hcCCceEEEEEEee
Q psy9829         161 IAHNCISAQIKRTH  174 (333)
Q Consensus       161 ~~g~~v~L~v~R~~  174 (333)
                      ..+..++|.|.|..
T Consensus        75 ~~g~~v~l~v~R~g   88 (103)
T 1v5l_A           75 AASYQLCLKIDRAE   88 (103)
T ss_dssp             TCCSEEECEECCCT
T ss_pred             hCCCeEEEEEEECC
Confidence            67888999998843

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.90  E-value=1e-05  Score=65.47  Aligned_cols=67  Identities=10%  Similarity=0.089  Sum_probs=52.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCcccc-ccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSF-RKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~l-r~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      +.+|||.+.++         +.+++|++|.+||.|         +.. +| ++||+ +.||+..+.+.+  ..+.+|+..
T Consensus        36 ~~~lG~~i~~~---------~~gv~V~~V~~~spA---------~~a-Gll~~GD~I~~vng~~v~~~~~~~~~~~l~~~   96 (113)
T 1va8_A           36 DIPLGATVRNE---------MDSVIISRIVKGGAA---------EKS-GLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM   96 (113)
T ss_dssp             TCCCCEEEEEC---------SSSEEEEEECTTSHH---------HHH-TCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCceeEEEEeC---------CCCEEEEEeCCCCHH---------HHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45899999864         468999999997654         433 35 99999 589999999765  556677777


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..+.|.|.|
T Consensus        97 ~~~v~l~v~r  106 (113)
T 1va8_A           97 HGTLTFVLIP  106 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             CCeEEEEEEE
Confidence            7789999876

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=97.90  E-value=4.7e-06  Score=64.50  Aligned_cols=70  Identities=10%  Similarity=0.007  Sum_probs=51.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.++.+       ..+++|++|.|||.|         +.. +|++||+ +.+|+..+++.+  ...++++..+
T Consensus        13 ~~~~G~~l~~~~~-------~~g~~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   75 (91)
T 2vsp_A           13 ENGYGFHLNAIRG-------LPGSFIKEVQKGGPA---------DLA-GLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSG   75 (91)
T ss_dssp             TTBTSCCCBCCTT-------CSCCBC-CCCTTSHH---------HHT-TCCTTCEEEEETTEECTTSCHHHHHHHHTTSC
T ss_pred             CCcccEEEEeccC-------CCCeEEEEECCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3489999987543       457899999997754         433 3799999 589999998553  5556676668


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|.|.
T Consensus        76 ~~v~l~v~r~   85 (91)
T 2vsp_A           76 KNVTLLVCGK   85 (91)
T ss_dssp             SEEEEEEEC-
T ss_pred             CEEEEEEEeC
Confidence            8899999874

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=97.89  E-value=3.1e-05  Score=62.27  Aligned_cols=73  Identities=12%  Similarity=0.052  Sum_probs=54.5

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcch--hhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVG--SWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~--a~~alr  160 (333)
                      .....+|||.+.++.+      .+.+++|++|.+||.|         +.. +|++||+ +.||+..+.+...  ...+++
T Consensus        23 ~~~~~~lG~~l~~~~~------~~~gv~V~~V~~~s~A---------~~a-GL~~GD~Il~vng~~v~~~~~~~~~~~~~   86 (114)
T 1x5n_A           23 LVGSRGLGCSISSGPI------QKPGIFISHVKPGSLS---------AEV-GLEIGDQIVEVNGVDFSNLDHKEAVNVLK   86 (114)
T ss_dssp             CCSSCCCCEEEEECCS------SSCSEEEEEECTTSTT---------TTT-TCCTTCEEEEETTEETTSCCTTHHHHHHH
T ss_pred             EcCCCceeEEEeecCC------CCCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            3446799999998854      2468999999997754         432 4799999 6899999999863  444555


Q ss_pred             hcCCceEEEEEEe
Q psy9829         161 IAHNCISAQIKRT  173 (333)
Q Consensus       161 ~~g~~v~L~v~R~  173 (333)
                      .. ..+.|.|.|.
T Consensus        87 ~~-~~v~l~v~r~   98 (114)
T 1x5n_A           87 SS-RSLTISIVAA   98 (114)
T ss_dssp             HC-SSEEEEECSS
T ss_pred             cC-CeEEEEEEcC
Confidence            54 5788888763

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=97.86  E-value=4.5e-05  Score=59.30  Aligned_cols=67  Identities=15%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchh--hhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGS--WQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a--~~alr~~  162 (333)
                      ...+|||.+.+          +.+++|++|.|||         ||+.. +|++||+ +.+|+..+.+....  +..++ .
T Consensus        17 ~~~~~G~~l~~----------~~g~~V~~V~~~s---------pA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~-~   75 (93)
T 2dls_A           17 DQHGFGFTVSG----------DRIVLVQSVRPGG---------AAMKA-GVKEGDRIIKVNGTMVTNSSHLEVVKLIK-S   75 (93)
T ss_dssp             SSSSCCEEEEC----------SSSCEEEEECSSS---------TTTTT-TCCSSCEEEEETTEECSSSCHHHHHHHHT-S
T ss_pred             CCCceeEEEeC----------CCCEEEEEECCCC---------HHHHc-CCCCCCEEEEECCEECCCCCHHHHHHhhc-C
Confidence            35689999874          3579999999976         44543 3799999 58999999987522  23334 5


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..++|.|.|.
T Consensus        76 g~~v~l~v~R~   86 (93)
T 2dls_A           76 GAYVALTLLGS   86 (93)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCEEEEEEEEC
Confidence            78899999884

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=97.85  E-value=1.4e-05  Score=65.06  Aligned_cols=71  Identities=11%  Similarity=-0.010  Sum_probs=52.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g  163 (333)
                      ..+|||.+.+|.+.      +++++|++|.|||.|         +..++|++||+ +.||+..+.+.  .....+++..+
T Consensus        35 ~~~lG~~l~~~~~~------~~~~~V~~V~~gspA---------~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   99 (114)
T 2gzv_A           35 QNLIGISIGGGAQY------CPCLYIVQVFDNTPA---------ALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   99 (114)
T ss_dssp             TSCCSEEEEECCC--------CCEEEEEECTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCcEeEEEEeCCCC------CCCEEEEEECCCChH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34699999987642      468999999998755         33223799999 58999999554  45556777777


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..++|.|++
T Consensus       100 ~~v~l~v~~  108 (114)
T 2gzv_A          100 GEVTIHYNK  108 (114)
T ss_dssp             SEEEEEEEC
T ss_pred             CeEEEEEEe
Confidence            778888865

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=7.5e-06  Score=65.00  Aligned_cols=71  Identities=6%  Similarity=-0.081  Sum_probs=54.2

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.+.++.       ++.++||++|.|||.|         +.. +|++||+ +.||+.++.+.+  ....+++..
T Consensus        17 ~~~~~G~~l~~~~-------~~~g~~V~~V~~~spA---------~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~   79 (106)
T 2eei_A           17 EGGSYGFSLKTVQ-------GKKGVYMTDITPQGVA---------MRA-GVLADDHLIEVNGENVEDASHEEVVEKVKKS   79 (106)
T ss_dssp             CSSSCSCCEECCS-------SCCSCEECCCCTTSHH---------HHH-TCCSSEEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecc-------CCCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3668999998763       3578999999998755         332 3799999 689999998764  444566667


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|.
T Consensus        80 ~~~v~l~v~r~   90 (106)
T 2eei_A           80 GSRVMFLLVDK   90 (106)
T ss_dssp             CSEEEEEECCT
T ss_pred             CCeEEEEEEcC
Confidence            88899998774

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.83  E-value=3.3e-05  Score=61.98  Aligned_cols=57  Identities=19%  Similarity=0.392  Sum_probs=48.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|.++.++   ++|++-| |++||+|++|||+.+.  +.++...+|+. .+.+.|+|.|+.
T Consensus        35 ~gv~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g   91 (113)
T 2pzd_A           35 HGVLIHKVILG---SPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGR   91 (113)
T ss_dssp             SCEEEEEEBTT---SHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETT
T ss_pred             CCeEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECC
Confidence            57999999999   7776654 9999999999999876  57888888887 688999999875

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=97.82  E-value=3.4e-05  Score=62.21  Aligned_cols=68  Identities=10%  Similarity=0.086  Sum_probs=51.0

Q ss_pred             eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcCCc
Q psy9829          89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAHNC  165 (333)
Q Consensus        89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g~~  165 (333)
                      +|||.+.++.       ++.+++|++|.|||         ||+.. +|++||+ +.||+..+++.  .....+++..+..
T Consensus        26 ~~G~~l~~~~-------~~~g~~V~~V~~~s---------pA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   88 (114)
T 2edz_A           26 NYGFFLRIEK-------DTDGHLIRVIEEGS---------PAEKA-GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS   88 (114)
T ss_dssp             CCSCEEECCT-------TCCSCEEECCCTTC---------TTGGG-TCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSE
T ss_pred             cccEEEEEec-------CCCCeEEEEeCCCC---------hHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            4566666532       34689999999976         45543 3799999 58999999886  3455667777889


Q ss_pred             eEEEEEEe
Q psy9829         166 ISAQIKRT  173 (333)
Q Consensus       166 v~L~v~R~  173 (333)
                      ++|.|.|.
T Consensus        89 v~l~v~R~   96 (114)
T 2edz_A           89 VTLLVLDG   96 (114)
T ss_dssp             EEEEEECH
T ss_pred             EEEEEEEC
Confidence            99999883

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.81  E-value=1.7e-05  Score=62.52  Aligned_cols=70  Identities=16%  Similarity=0.098  Sum_probs=52.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g  163 (333)
                      ..+|||.+.++.+.      +.+++|++|.+||.|         +.. +|++||+ +.||+..+.+... .+++..  .+
T Consensus        20 ~~~lG~~~~~~~~~------~~g~~V~~V~~~spA---------~~a-GL~~GD~I~~ing~~v~~~~~-~~~~~~~~~~   82 (101)
T 1uez_A           20 HEGLGFSIRGGSEH------GVGIYVSLVEPGSLA---------EKE-GLRVGDQILRVNDKSLARVTH-AEAVKALKGS   82 (101)
T ss_dssp             TTCSSEEEEECTTT------TCCEEEEEECTTSHH---------HHH-TCCSSCCEEEETTEECSSCCH-HHHHHHSSSS
T ss_pred             CCcccEEEeCCCCC------CCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCcCH-HHHHHhhcCC
Confidence            46999999988752      368999999998754         432 3799999 6899999998864 334433  34


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        83 ~~v~l~v~R~   92 (101)
T 1uez_A           83 KKLVLSVYSA   92 (101)
T ss_dssp             SSCCEEECCC
T ss_pred             CeEEEEEEEC
Confidence            5688988773

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=97.80  E-value=2e-05  Score=65.07  Aligned_cols=71  Identities=11%  Similarity=0.062  Sum_probs=54.9

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~  161 (333)
                      ..+.+|||.+.+|.        +.+++|+.|.|||.|         +.. +|++||+ +.||++.+.++  .....+|+.
T Consensus        36 ~~~~~lG~~l~~~~--------~~gv~V~~V~~gspA---------~~a-GL~~GD~Il~Vng~~v~~~~~~~~~~~l~~   97 (124)
T 3tsv_A           36 RKGDSVGLRLAGGN--------DVGIFVAGVLEDSPA---------AKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLD   97 (124)
T ss_dssp             ECSSCCCEEEEECT--------TSCEEEEEECTTCHH---------HHT-TCCTTEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCCceeEEEecCC--------CCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            33679999999764        368999999998754         432 3799999 68999999998  455566664


Q ss_pred             --cCCceEEEEEEe
Q psy9829         162 --AHNCISAQIKRT  173 (333)
Q Consensus       162 --~g~~v~L~v~R~  173 (333)
                        .+..+.|.|.|.
T Consensus        98 ~~~g~~v~l~v~R~  111 (124)
T 3tsv_A           98 LPKGEEVTILAQKK  111 (124)
T ss_dssp             SCTTCEEEEEEEEC
T ss_pred             cCCCCEEEEEEEEC
Confidence              677899999884

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=97.78  E-value=6.2e-05  Score=59.54  Aligned_cols=58  Identities=17%  Similarity=0.306  Sum_probs=48.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~  284 (333)
                      .+++|.++.++   ++|++  .|++||+|++|||+.+.+  .++...+|...  .+.+.|+|.|+..
T Consensus         7 ~Gv~V~~V~~~---spA~~--GL~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~   66 (100)
T 3i18_A            7 DGVYVMSVKDD---VPAAD--VLHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDK   66 (100)
T ss_dssp             CCEEEEEECTT---SGGGG--TCCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             CCEEEEEeCCC---CchHH--CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            47999999999   88874  699999999999987764  56778888764  5789999999753

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.77  E-value=2.2e-05  Score=64.41  Aligned_cols=74  Identities=12%  Similarity=-0.000  Sum_probs=56.0

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc-CCc
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA-HNC  165 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~-g~~  165 (333)
                      .+|||.+.+..+.+    .+.+++|++|.+||.|         +..++|++||+ +.||+..+.+......+|+.. +..
T Consensus        32 ~~lG~~~~~~~~~~----~~~gv~V~~V~~~spA---------~~aG~l~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~   98 (124)
T 1wh1_A           32 DKLGLTVCYRTDDE----DDIGIYISEIDPNSIA---------AKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKN   98 (124)
T ss_dssp             CCCCEEEECCCCCS----SCCCEEEEEECSSSHH---------HHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSCCS
T ss_pred             CcccEEEEecCCCC----CCCCEEEEEECCCCHH---------HHcCCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCE
Confidence            47999999876653    2579999999997754         44333799999 589999998876666677653 677


Q ss_pred             eEEEEEEee
Q psy9829         166 ISAQIKRTH  174 (333)
Q Consensus       166 v~L~v~R~~  174 (333)
                      +.|.|.|..
T Consensus        99 v~l~v~R~g  107 (124)
T 1wh1_A           99 FSLLIARPE  107 (124)
T ss_dssp             CCEEEEECS
T ss_pred             EEEEEEECC
Confidence            999998843

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=97.73  E-value=1.9e-05  Score=61.79  Aligned_cols=69  Identities=14%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g  163 (333)
                      ..||||.+.++.       +..+++|++|.|||.|         +.. +|++||+ +.+|+..+.+.  .....+++...
T Consensus        19 ~~g~G~~~~~~~-------~~~g~~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   81 (98)
T 2jxo_A           19 PSGYGFNLHSDK-------SKPGQFIRSVDPDSPA---------EAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (98)
T ss_dssp             TTCCCEEEECCC-------SSSCEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CCcccEEEEecC-------CCCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            468999998764       2458999999997754         433 3799999 58999999984  45556666654


Q ss_pred             C-ceEEEEEE
Q psy9829         164 N-CISAQIKR  172 (333)
Q Consensus       164 ~-~v~L~v~R  172 (333)
                      . .+.|+|.|
T Consensus        82 ~~~~~l~v~R   91 (98)
T 2jxo_A           82 DETKLLVVDR   91 (98)
T ss_dssp             TEEEEEECCH
T ss_pred             CcEEEEEEEC
Confidence            3 45677766

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.73  E-value=1.4e-05  Score=69.02  Aligned_cols=55  Identities=29%  Similarity=0.454  Sum_probs=48.4

Q ss_pred             CCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHh
Q psy9829           9 KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKE   63 (333)
Q Consensus         9 ~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~   63 (333)
                      .+.+.++.++|++++++|+.||||+++++++.++.....+++|||.||+.+.|++
T Consensus        79 ~n~yg~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~  133 (180)
T 1kgd_A           79 DAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLN  133 (180)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSC
T ss_pred             CccccccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHh
Confidence            4466788899999999999999999999999999877789999999999876653

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.71  E-value=4.1e-05  Score=62.67  Aligned_cols=69  Identities=7%  Similarity=0.007  Sum_probs=50.2

Q ss_pred             eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCCc
Q psy9829          89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHNC  165 (333)
Q Consensus        89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~~  165 (333)
                      +|||.|.+..+.     +..+++|++|.|||.|         ... +|++||+ +.||+..+.++.  ....+++  +..
T Consensus        30 ~~G~~v~~~~~~-----~~~gv~V~~V~~~spA---------~~a-GL~~GD~Il~Ing~~v~~~~~~~~~~~l~--~~~   92 (114)
T 2d8i_A           30 TYGFSLSSVEED-----GIRRLYVNSVKETGLA---------SKK-GLKAGDEILEINNRAADALNSSMLKDFLS--QPS   92 (114)
T ss_dssp             CCCCEEEEEEET-----TEEEEEEEECCTTSSH---------HHH-TCCTTCCEEEESSCBGGGCCHHHHHHHHT--SSE
T ss_pred             ccCEEEEecCcC-----CcCCEEEEEeCCCCHH---------HHc-CCCCCCEEEEECCEECCCcCHHHHHHHHh--CCc
Confidence            799999885443     2268999999997754         433 4799999 589999998864  3334444  347


Q ss_pred             eEEEEEEee
Q psy9829         166 ISAQIKRTH  174 (333)
Q Consensus       166 v~L~v~R~~  174 (333)
                      +.|.|+|..
T Consensus        93 v~l~v~R~p  101 (114)
T 2d8i_A           93 LGLLVRTYP  101 (114)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            899998844

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.71  E-value=7.3e-05  Score=62.42  Aligned_cols=58  Identities=14%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~  284 (333)
                      .+++|.++.++   ++|+  ..|++||+|++|||+.+.+  ..+....|...  .+.+.|+|.|+..
T Consensus        57 ~g~~V~~V~~~---spA~--aGL~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~  116 (134)
T 2l97_A           57 SGVIVRSVQSN---MPAN--GHLEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTIKITYYRNGK  116 (134)
T ss_dssp             SCEEEEECSTT---SGGG--TTSCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEEEEEEEETTE
T ss_pred             CCEEEEEECCC---CchH--HCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            57999999999   7776  5799999999999998875  45677777764  6789999999753

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=4.8e-05  Score=59.84  Aligned_cols=70  Identities=14%  Similarity=0.078  Sum_probs=52.2

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ...|||.+.++.+      .+.+++|++|.|||.|         +.. +|++||+ +.+|+..++++.  ..+..++. +
T Consensus        21 ~~~lG~~~~~~~~------~~~gv~V~~V~~~spA---------~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~   83 (100)
T 2eeh_A           21 AGRLGFSVRGGSE------HGLGIFVSKVEEGSSA---------ERA-GLCVGDKITEVNGLSLESTTMGSAVKVLTS-S   83 (100)
T ss_dssp             SSSCSEEEECCTT------TTCCEEEEEECTTSHH---------HHH-TCCSSCEEEEETTEECSSCCHHHHHHHHHS-C
T ss_pred             CCCccEEEEcccc------CCCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHhhcC-C
Confidence            3469999998754      2368999999997754         433 3799999 589999999974  33334444 7


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        84 ~~v~l~v~R~   93 (100)
T 2eeh_A           84 SRLHMMVRRM   93 (100)
T ss_dssp             SSEEEEEEEC
T ss_pred             CEEEEEEEEC
Confidence            8899999883

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.69  E-value=2.5e-05  Score=63.16  Aligned_cols=70  Identities=9%  Similarity=0.027  Sum_probs=52.2

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchh--hhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGS--WQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a--~~alr~~  162 (333)
                      ...+|||.+.++.        +.+++|++|.|||.|         +.. +|++||+ +.||+..+.+....  ..+++..
T Consensus        28 ~~~~lG~~~~~~~--------~~gv~V~~V~~~spA---------~~a-GL~~GD~Il~vng~~v~~~~~~~~~~~~~~~   89 (117)
T 1uit_A           28 GSEPLGISIVSGE--------KGGIYVSKVTVGSIA---------HQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQ   89 (117)
T ss_dssp             SSCCCCEEEEECT--------TSCEEEEEECTTSHH---------HHH-TCCTTCEECEETTEETTTCCHHHHHHHTTSC
T ss_pred             CCCCccEEEEccC--------CCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3468999998764        358999999998754         432 3799999 58999999888532  2233456


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..++|.|.|.
T Consensus        90 g~~v~l~v~r~  100 (117)
T 1uit_A           90 CDTITILAQYN  100 (117)
T ss_dssp             CSEEEEEECCC
T ss_pred             CCeEEEEEEEC
Confidence            77899999874

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.66  E-value=8.8e-05  Score=58.28  Aligned_cols=66  Identities=9%  Similarity=0.035  Sum_probs=49.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.|.+.         ..+++|++|.++          |+  +.+|++||+ +.||+.++.+++  ..+.+|+.. 
T Consensus        20 ~~g~G~~i~~~---------~~Gv~V~~v~~~----------a~--~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   78 (96)
T 1ujv_A           20 AQGFGFTIADS---------PTGQRVKQILDI----------QG--CPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             SSSSSEEEEEE---------TTEEEEEEESCG----------GG--STTCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CCceeEEEEcC---------CCCEEEEEEecc----------cc--cCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            36899998632         237999999993          22  245799999 589999999983  556777773 


Q ss_pred             -CCceEEEEEEe
Q psy9829         163 -HNCISAQIKRT  173 (333)
Q Consensus       163 -g~~v~L~v~R~  173 (333)
                       +..+.|.|+|.
T Consensus        79 ~g~~v~l~v~R~   90 (96)
T 1ujv_A           79 IGSETSLIIHRG   90 (96)
T ss_dssp             TTSEEEEEEECC
T ss_pred             CCCEEEEEEEEC
Confidence             67899999884

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=97.64  E-value=9.7e-05  Score=58.88  Aligned_cols=68  Identities=7%  Similarity=0.018  Sum_probs=48.6

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~  164 (333)
                      .+|||++.++...     +..+++|++|.|||.|         .. .+|++||+ +.||+..+.+..  ....++  .+.
T Consensus        20 ~~~Gf~v~~~~~~-----~~~g~~V~~V~~~spA---------~~-aGL~~GD~Il~vng~~v~~~~~~~l~~~l--~~~   82 (94)
T 3kzd_A           20 DTYGFSLSSVEED-----GIRRLYVNSVKETGLA---------SK-KGLKAGDEILEINNRAADALNSSMLKDFL--SQP   82 (94)
T ss_dssp             -CCSEEEEEECSS-----SSCEEEEEEECTTSHH---------HH-TTCCTTCEEEEETTEEGGGCCHHHHHHHH--HSS
T ss_pred             CCcCEEEEecCCC-----CcCCeEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHH--hCC
Confidence            4799999876532     3468999999997754         33 34799999 589999998864  222233  366


Q ss_pred             ceEEEEEE
Q psy9829         165 CISAQIKR  172 (333)
Q Consensus       165 ~v~L~v~R  172 (333)
                      .++|.|+.
T Consensus        83 ~l~ltV~~   90 (94)
T 3kzd_A           83 SLGLLVRT   90 (94)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            78888865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.62  E-value=4.4e-05  Score=66.90  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=58.1

Q ss_pred             CCCCCCCeeehHHHHHHHHcCCEEEEecCcccccccccccc--ccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhc
Q psy9829           6 DSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQF--YPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRV   82 (333)
Q Consensus         6 ~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l--~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~   82 (333)
                      +.....+.+..++|++++++|+.||+|+++++++.|+....  .+++|||.|++.+.+. +++.|..++.+.+..+..+.
T Consensus        83 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~  162 (204)
T 2qor_A           83 KYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQEL  162 (204)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred             HhCCCeecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34455677888899999999999999999999998876533  4699999988877665 77777655555555555443

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.62  E-value=3.5e-05  Score=60.78  Aligned_cols=67  Identities=9%  Similarity=0.032  Sum_probs=50.1

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~  164 (333)
                      .+|||.+.+.          .+++|++|.|||.|         +. .+|++||+ +.||+..+.+.+  ....+++..+.
T Consensus        26 ~g~G~~~~~~----------~~~~V~~V~~~spA---------~~-aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   85 (100)
T 1whd_A           26 DGFGFTICCD----------SPVRVQAVDSGGPA---------ER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS   85 (100)
T ss_dssp             SSSSCBCCCS----------SSCBCCBCCTTSHH---------HH-HTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSS
T ss_pred             CeeeEEEeCC----------CCEEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4788877642          46899999998754         33 34799999 589999998763  44566676677


Q ss_pred             ceEEEEEEee
Q psy9829         165 CISAQIKRTH  174 (333)
Q Consensus       165 ~v~L~v~R~~  174 (333)
                      .+.|.|.|..
T Consensus        86 ~v~l~v~R~~   95 (100)
T 1whd_A           86 EIILLVWRVS   95 (100)
T ss_dssp             EEEEEEEECC
T ss_pred             eEEEEEEECC
Confidence            7999998843

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=97.57  E-value=5.1e-05  Score=60.06  Aligned_cols=74  Identities=15%  Similarity=0.110  Sum_probs=52.1

Q ss_pred             cceeeEEEecccCCC-CCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          87 GSTFVGSVLGARGAL-DLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p-~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      +.+|||.+.+....- .....+.+++|++|.+||.|         +.. +|++||+ +.||+..+.+.+  ....+++..
T Consensus        26 ~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA---------~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~l~~~   95 (104)
T 2z17_A           26 NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPA---------HCA-GLQAGDVLANINGVSTEGFTYKQVVDLIRSS   95 (104)
T ss_dssp             TSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHH---------HHH-TCCTTCBCCEETTEECTTCCHHHHHHHHHHT
T ss_pred             CCCccEEEEeeecccCCcccCCCCeEEEEECCCChH---------HHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Confidence            458999999854321 11124679999999997654         443 3799999 699999999653  556677776


Q ss_pred             CCceEEEE
Q psy9829         163 HNCISAQI  170 (333)
Q Consensus       163 g~~v~L~v  170 (333)
                      +..++|.|
T Consensus        96 ~~~v~l~v  103 (104)
T 2z17_A           96 GNLLTIET  103 (104)
T ss_dssp             TTEEEEEC
T ss_pred             CCcEEEEE
Confidence            66777654

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.56  E-value=0.00012  Score=58.57  Aligned_cols=57  Identities=26%  Similarity=0.465  Sum_probs=47.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+++|..+.++   ++|++- .|++||+|++|||+.+.+  ..+....|+ ..+.+.|+|.|+.
T Consensus        35 ~gv~V~~V~~~---spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g   91 (112)
T 2p3w_A           35 SGIYVQEVAPN---SPSQRG-GIQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGN   91 (112)
T ss_dssp             SSEEEEEECTT---SHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETT
T ss_pred             CCeEEEEECCC---ChHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECC
Confidence            57999999999   776654 599999999999998874  577777774 4778999999875

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.53  E-value=0.0001  Score=56.67  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=45.8

Q ss_pred             EEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccC
Q psy9829         222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV  283 (333)
Q Consensus       222 IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~  283 (333)
                      ++|.++.++   ++|++. .|++||+|++|||+...  +.++....|+.. .+.+.|+|.|+.
T Consensus         6 ~~V~~v~~~---spA~~a-Gl~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g   62 (91)
T 2zpm_A            6 PVLENVQPN---SAASXA-GLQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQG   62 (91)
T ss_dssp             CBCSEECTT---SHHHHT-TCCTTCEEEEETTEECC--CHHHHHHHHHHCTTCCEEEEEEETT
T ss_pred             eEEEEECCC---ChHHhc-CCCCCCEEEEECCeEcC--CHHHHHHHHhcCCCCeEEEEEEECC
Confidence            568899999   777654 49999999999998876  467888888764 568999999875

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.53  E-value=0.0016  Score=66.54  Aligned_cols=156  Identities=16%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcch----------hhhhhh--hcCCceEEEEEEe
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVG----------SWQVFR--IAHNCISAQIKRT  173 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~----------a~~alr--~~g~~v~L~v~R~  173 (333)
                      +.|++|++|.|||         ||+. . ||+||+ +.+||..|.....          -..++.  ..|..++|.|.|.
T Consensus       276 ~~Gv~V~~V~~~s---------pA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~  344 (539)
T 4fln_A          276 NEGVLVRRVEPTS---------DASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRA  344 (539)
T ss_dssp             SBCEEEEEECTTS---------GGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEET
T ss_pred             cCceeeecccCCC---------hHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEEC
Confidence            5799999999976         4443 3 699999 5899988865421          112232  3577899998882


Q ss_pred             e-------ccCCCCCCCCC--------CC-CCCceeEEe-eecCCC----ccccccceeecccc---cccCeEEEEEEcc
Q psy9829         174 H-------FNYDQPEKGEM--------SF-RKGDVFHVI-DTLHNG----VVGSWQVFRIDFGI---ILGNKIFVKEVTH  229 (333)
Q Consensus       174 ~-------~~~~~p~~~~l--------~~-~~g~~~hv~-~sl~~~----~lG~~~~~~~d~G~---~l~~~IfI~~I~~  229 (333)
                      .       ...+.|..-..        .+ ..|-+++-. ..+..+    ..+.+......++.   .-..++.|+.|.+
T Consensus       345 Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~V~~  424 (539)
T 4fln_A          345 GEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLA  424 (539)
T ss_dssp             TEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEEECC
T ss_pred             CEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHHHhhcccccCceeeehhhhhhhccCCceEEEEEEecC
Confidence            2       11122211000        00 112222211 000000    00000000000000   0014689999999


Q ss_pred             CcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCc-eEEEE
Q psy9829         230 RLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK-LSLTI  279 (333)
Q Consensus       230 g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~-v~L~V  279 (333)
                      +   ++|+. ..++.||+|++|||+...  +++|-+++|+.+++. +.|.+
T Consensus       425 ~---s~a~~-~g~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          425 N---EVNIG-YEDMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             C---GGGTT-CSSCCSEEEEEETTEECC--SHHHHHHHHHTCCSSEEEEEE
T ss_pred             C---chhhh-cCCCCCCEEEeECCEEcC--CHHHHHHHHHHcCCCeEEEEE
Confidence            8   65543 458999999999998776  467789999999886 44444

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=97.47  E-value=0.00011  Score=56.26  Aligned_cols=66  Identities=14%  Similarity=0.028  Sum_probs=48.5

Q ss_pred             eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeec--cCcchhhhhhhh--cC
Q psy9829          89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLH--NGVVGSWQVFRI--AH  163 (333)
Q Consensus        89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv--~gv~~a~~alr~--~g  163 (333)
                      +|||.+..         .+.+++|++|.|||.|         +. .+|++||+ +.+|+..+  ........+++.  .+
T Consensus        18 ~lG~~~~~---------~~~g~~V~~V~~~spA---------~~-aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g   78 (90)
T 2eaq_A           18 DFGFTIKW---------DIPGIFVASVEAGSPA---------EF-SQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQET   78 (90)
T ss_dssp             CCSEEEEE---------ETTEEEEEEECTTSHH---------HH-TTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccEEEEe---------cCCCEEEEEECCCChH---------HH-cCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCC
Confidence            67887762         2468999999998754         33 24799999 58999999  444444556664  57


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..+.|.|.|.
T Consensus        79 ~~v~l~v~R~   88 (90)
T 2eaq_A           79 GHLVMDVRRY   88 (90)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEeC
Confidence            7899999873

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=97.46  E-value=0.00011  Score=56.24  Aligned_cols=56  Identities=13%  Similarity=0.177  Sum_probs=42.6

Q ss_pred             CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcCCceEEEEEE
Q psy9829         108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAHNCISAQIKR  172 (333)
Q Consensus       108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g~~v~L~v~R  172 (333)
                      .+++|++|.+||.|         +..++|++||+ +.+|+..+.+.  .....+++..+..+.|.|.|
T Consensus        23 ~gv~V~~v~~~s~A---------~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r   81 (92)
T 3cyy_A           23 SHIFVKEISQDSLA---------ARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR   81 (92)
T ss_dssp             EEEEEEEECTTCHH---------HHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC
T ss_pred             CCEEEEEECCCChH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEe
Confidence            58999999998754         43223799999 58999999854  35556677666788899977

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.44  E-value=0.00019  Score=58.86  Aligned_cols=69  Identities=13%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcch--hhhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVG--SWQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~--a~~alr~~g~  164 (333)
                      .+|||.+.++.+      .+.+++|++|.+||.|         +. .+|++||+ +.||+..+.+...  ++..++. +.
T Consensus        32 ~~lG~~~~~~~~------~~~gv~V~~V~~~spA---------~~-aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~   94 (128)
T 1uf1_A           32 RSLGLTIRGGAE------YGLGIYITGVDPGSEA---------EG-SGLKVGDQILEVNGRSFLNILHDEAVRLLKS-SR   94 (128)
T ss_dssp             CCCCEEEECCTT------TTCCCEEEEECTTCHH---------HH-HTCCTTCEEEEETTEECSSCCHHHHHHHHTT-CS
T ss_pred             CccCEEEECccc------CCCCEEEEEECCCCHH---------HH-CCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CC
Confidence            478999998643      2358999999998754         43 34799999 5899999998853  2233333 45


Q ss_pred             ceEEEEEEe
Q psy9829         165 CISAQIKRT  173 (333)
Q Consensus       165 ~v~L~v~R~  173 (333)
                      .+.|.|.|.
T Consensus        95 ~v~l~v~R~  103 (128)
T 1uf1_A           95 HLILTVKDV  103 (128)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEEC
Confidence            788999873

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.43  E-value=0.00012  Score=57.03  Aligned_cols=63  Identities=13%  Similarity=-0.045  Sum_probs=47.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.+.+|             +|++|.+||.|         +.. +|++||+ +.||+..+.+.+  ....+++..+
T Consensus        23 ~~~lG~~~~~G-------------~V~~V~~~spA---------~~a-GL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g   79 (90)
T 1y7n_A           23 RYQLGFSVQNG-------------IICSLMRGGIA---------ERG-GVRVGHRIIEINGQSVVATPHEKIVHILSNAV   79 (90)
T ss_dssp             TSCCCEEEETT-------------EEEEECTTSHH---------HHH-TCCSSCEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             ccccCeEecCC-------------EEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            55788888643             89999997754         433 4799999 589999997653  5566777778


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..+.|.|.+
T Consensus        80 ~~v~l~v~p   88 (90)
T 1y7n_A           80 GEIHMKTMP   88 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             CeEEEEEEE
Confidence            888888864

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=97.41  E-value=0.00017  Score=57.61  Aligned_cols=70  Identities=17%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCcccc-ccCCE-EEEceeeccCc--chhhhhhhh-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSF-RKGDV-FHVIDTLHNGV--VGSWQVFRI-  161 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~l-r~gD~-I~Vnd~dv~gv--~~a~~alr~-  161 (333)
                      ..||||.+.++.+       +.+++|++|.+||.|         +.. +| ++||+ +.||+..+.+.  .....+++. 
T Consensus        12 ~~glG~~~~~~~~-------~~~~~V~~v~~~spA---------~~a-Gll~~GD~I~~ing~~v~~~~~~~~~~~l~~~   74 (112)
T 1qau_A           12 VGGLGFLVKERVS-------KPPVIISDLIRGGAA---------EQS-GLIQAGDIILAVNDRPLVDLSYDSALEVLRGI   74 (112)
T ss_dssp             TTBTSEEEEECSS-------SSCEEEEEECTTSHH---------HHH-TCCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             CCceeEEEEecCC-------CCCEEEEEeCCCChH---------HHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4589999987642       468999999997754         433 45 99999 58999999984  355556665 


Q ss_pred             cCCceEEEEEEe
Q psy9829         162 AHNCISAQIKRT  173 (333)
Q Consensus       162 ~g~~v~L~v~R~  173 (333)
                      .+..+.|.|.|.
T Consensus        75 ~g~~v~l~v~R~   86 (112)
T 1qau_A           75 ASETHVVLILRG   86 (112)
T ss_dssp             CSSSEEEEEEEC
T ss_pred             CCCcEEEEEEeC
Confidence            457799999883

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=97.41  E-value=0.0001  Score=60.33  Aligned_cols=69  Identities=14%  Similarity=0.099  Sum_probs=51.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~-  162 (333)
                      ..||||.+.++.+       +.+++|++|.+||.|         +.. +|++||+ +.||+..+.+.  .....+++.. 
T Consensus        19 ~~g~G~~l~~~~~-------~~gv~V~~V~~~spA---------~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   81 (128)
T 2kjd_A           19 PSGYGFNLHSDKS-------KPGQFIRSVDPDSPA---------EAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (128)
T ss_dssp             SSSCCEEEEECSS-------SCSEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTTC
T ss_pred             CCcccEEEEecCC-------CCCEEEEEeCCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4689999987642       358999999997754         433 3799999 58999999984  3455566654 


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..+.|+|.|
T Consensus        82 ~~~~~l~v~R   91 (128)
T 2kjd_A           82 DETKLLVVDR   91 (128)
T ss_dssp             SEEEEEEECH
T ss_pred             CCEEEEEEEe
Confidence            4456788877

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=97.40  E-value=0.0002  Score=58.17  Aligned_cols=69  Identities=9%  Similarity=-0.019  Sum_probs=50.7

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~  162 (333)
                      ...+|||.+.|.          .+++|++|.|||.|         +. .+|++||+ +.||+.++.+.  .....+++..
T Consensus        32 ~~~~~G~~l~~~----------~~v~V~~V~~gspA---------~~-AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~   91 (109)
T 2vsv_A           32 EEGDLGFTLRGN----------APVQVHFLDPYCSA---------SV-AGAREGDYIVSIQLVDCKWLTLSEVMKLLKSF   91 (109)
T ss_dssp             GGGCCCEEEESS----------SSCEEEEECTTSHH---------HH-TTCCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CCCceeEEEeCC----------CCeEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            357899988642          45899999998755         33 34799999 58999999965  4555666666


Q ss_pred             CCc-eEEEEEEee
Q psy9829         163 HNC-ISAQIKRTH  174 (333)
Q Consensus       163 g~~-v~L~v~R~~  174 (333)
                      +.. ++|.|.|..
T Consensus        92 ~~~~v~l~V~~~~  104 (109)
T 2vsv_A           92 GEDEIEMKVVSLL  104 (109)
T ss_dssp             TTSCEEEEEESCC
T ss_pred             CCCeEEEEEEECC
Confidence            665 899987743

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.39  E-value=0.00013  Score=65.90  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             CCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhccccc
Q psy9829          10 CSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRVLFPV   86 (333)
Q Consensus        10 ~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~~qE~   86 (333)
                      .++.|+.+.|++++++|+.||||+++++.+++...-..+..|||.|++.+.++ +++.+.+++.+.+..|..+...|.
T Consensus        92 ~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~  169 (219)
T 1s96_A           92 NYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEM  169 (219)
T ss_dssp             EEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            45668888999999999999999999999998875446789999999988876 577787788888888887765554

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.39  E-value=0.00025  Score=54.44  Aligned_cols=57  Identities=19%  Similarity=0.189  Sum_probs=44.0

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~  283 (333)
                      ++.|..+.|+   ++|++- .|++||+|++|||+.+.+  .++..++++..  .+.+.|+|.|+.
T Consensus        20 G~~V~~~~~~---s~A~~a-Gl~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g   78 (87)
T 2i6v_A           20 GYRVSPGKDP---VLFESI-GLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEECSCH---HHHHHT-TCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEeCCCC---CHHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence            5677777776   666654 599999999999998764  56666777653  568999999875

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=97.38  E-value=0.00014  Score=54.05  Aligned_cols=65  Identities=11%  Similarity=0.139  Sum_probs=46.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ...|||.+.            .+++|++|.|||.|         +..+.|++||+ +.+|+..+.+.+  ....+++..+
T Consensus        12 ~~~~g~~~~------------~gv~V~~v~~~s~A---------~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   70 (81)
T 2rcz_A           12 NEEYGLRLA------------SHIFVKEISQDSLA---------ARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK   70 (81)
T ss_dssp             TCCCCEEEE------------EEEEEEEECTTSHH---------HHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             CCCCCEEEe------------CCEEEEEECCCChH---------HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence            446666665            35999999998754         33223799999 589999999553  4455666666


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..+.|.|.|
T Consensus        71 ~~v~l~v~R   79 (81)
T 2rcz_A           71 GKLKMVVQR   79 (81)
T ss_dssp             TEEEEEEEC
T ss_pred             CeEEEEEEe
Confidence            688888876

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.37  E-value=0.00026  Score=68.94  Aligned_cols=61  Identities=13%  Similarity=0.305  Sum_probs=53.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~~  284 (333)
                      .+++|.++.++   ++|++.| |++||+|++|||+++.+++++++.++|+.. ...+.|+|.|+..
T Consensus        99 ~~~~V~~v~~~---spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           99 KDVVVLTPAPG---GPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             SCEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             CcEEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            46899999999   8887765 999999999999999999999999999864 4579999988754

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.32  E-value=0.00035  Score=57.29  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCC--CCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKST--GSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA  162 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~--g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~  162 (333)
                      .||++.+....     .+...+++|++|.+  |+.|         +. .+|++||+ +.||+..+.+.  .....+++..
T Consensus        29 ~G~~v~l~~~~-----~~~~~gv~V~~V~~~~~spA---------~~-aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~   93 (118)
T 2yub_A           29 RGFSVTVESAS-----SNYATTVQVKEVNRMHISPN---------NR-NAIHPGDRILEINGTPVRTLRVEEVEDAIKQT   93 (118)
T ss_dssp             CSSEEEEECTT-----SSSCCEEEEEECCTTTSCTT---------HH-HHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC
T ss_pred             ceEEEEecccc-----ccCCCcEEEEEecCCCCChH---------HH-cCCCCCCEEEEECCEECCCcCHHHHHHHHHhC
Confidence            45666543222     23457999999999  8754         33 35799999 58999999888  5555566655


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|.
T Consensus        94 g~~v~l~v~R~  104 (118)
T 2yub_A           94 SQTLQLLIEHD  104 (118)
T ss_dssp             SSCEEEEEEEC
T ss_pred             CCEEEEEEEEC
Confidence            77899999873

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.30  E-value=0.00059  Score=56.57  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=46.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~  284 (333)
                      .+++|.++.++   ++|++-  |++||+|++|||+.+.+  .++....++.  ..+.+.|+| |+..
T Consensus        25 ~gv~V~~V~~~---spA~~a--L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           25 DGVQIDSVVPG---SPASKV--LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCEEEEEECSS---SGGGGT--SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CceEEEEECCC---ChHHHh--cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            46899999999   777765  99999999999988764  4677777774  467899999 8764

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.28  E-value=0.00028  Score=69.88  Aligned_cols=66  Identities=26%  Similarity=0.394  Sum_probs=51.6

Q ss_pred             ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCCC
Q psy9829         214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPR  285 (333)
Q Consensus       214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~~  285 (333)
                      +|+....+++|.+|.++   ++|++.| |+.||+|++|||+.+.+.  .+....+..  ..+.+.|+|.|+...
T Consensus       257 ~gl~~~~G~~V~~V~~~---spA~~aG-L~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~  324 (436)
T 4a8c_A          257 FNLDVQRGAFVSEVLPG---SGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKP  324 (436)
T ss_pred             hCCCCCcceEEEEECCC---ChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            34443468999999999   8887776 999999999999988765  455556654  467999999997643

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=97.26  E-value=0.00052  Score=53.84  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=44.7

Q ss_pred             EEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCC
Q psy9829         223 FVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVP  284 (333)
Q Consensus       223 fI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~  284 (333)
                      .|.+|.++   ++|++- .|++||+|++|||+...+  .++....|....  +.+.|+|.|+..
T Consensus         5 ~V~~V~~~---spA~~a-Gl~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            5 VVGEIAAN---SIAAEA-QIAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             BEEEECTT---SHHHHT-TCCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EEEeeCCC---CHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            48899999   776654 599999999999988764  567777776543  579999999874

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=97.25  E-value=0.00013  Score=59.71  Aligned_cols=69  Identities=17%  Similarity=0.118  Sum_probs=52.3

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCcccc-ccCCE-EEEceeeccCc--chhhhhhhh-c
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSF-RKGDV-FHVIDTLHNGV--VGSWQVFRI-A  162 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~l-r~gD~-I~Vnd~dv~gv--~~a~~alr~-~  162 (333)
                      .||||.+.++.+       +.+++|++|.+||.         |+.. +| ++||+ +.||+..+.+.  .....+++. .
T Consensus        20 ~glG~~~~~~~~-------~~~~~V~~V~~~sp---------A~~a-Gll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   82 (127)
T 1b8q_A           20 GGLGFLVKERVS-------KPPVIISDLIRGGA---------AEQS-GLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA   82 (127)
T ss_dssp             SCCSCCEEECTT-------SSCEEECCCSSSSS---------HHHH-SSCCTTTCCCEETTEECSSSCHHHHHHHHHSCC
T ss_pred             CcEeEEEEecCC-------CCCEEEEEeCCCCH---------HHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            599999987542       47899999999764         4443 35 99999 69999999994  455556665 3


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..+.|.|.|.
T Consensus        83 g~~v~l~v~R~   93 (127)
T 1b8q_A           83 SETHVVLILRG   93 (127)
T ss_dssp             SSCEEEEEECC
T ss_pred             CCeEEEEEEeC
Confidence            56799999873

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.23  E-value=0.00032  Score=56.79  Aligned_cols=72  Identities=6%  Similarity=-0.033  Sum_probs=51.3

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~  162 (333)
                      .+.+|||.+.++          .+++|++|.+||.|         +. .+|++||+ +.||+..+.+.  .....+++..
T Consensus        24 ~~~~~G~~l~~~----------~~v~V~~V~~~spA---------~~-aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~   83 (111)
T 1vae_A           24 EEGDLGFTLRGN----------TPVQVHFLDPHCSA---------SL-AGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSF   83 (111)
T ss_dssp             CSSCCSCCEESS----------SSCEECCCCTTSSH---------HH-HHCCTTCEEEEETTEECSSCCHHHHHHHHHHT
T ss_pred             CCCcccEEEeCC----------CCEEEEEECCCCHH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            356888888643          35899999997654         43 35799999 58999999854  4455566665


Q ss_pred             CC-ceEEEEEEeeccC
Q psy9829         163 HN-CISAQIKRTHFNY  177 (333)
Q Consensus       163 g~-~v~L~v~R~~~~~  177 (333)
                      +. .+.|.|.|.....
T Consensus        84 ~~~~v~l~V~~~~~~~   99 (111)
T 1vae_A           84 GGEEVEMKVVSLLDST   99 (111)
T ss_dssp             TTSEECEEEECEECCC
T ss_pred             CCceEEEEEEecCCCc
Confidence            54 4899998865443

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.23  E-value=0.00063  Score=64.29  Aligned_cols=65  Identities=18%  Similarity=0.274  Sum_probs=51.2

Q ss_pred             ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829         214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  284 (333)
Q Consensus       214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~  284 (333)
                      +|+....+++|.++.++   ++|++- .|++||+|++|||+...+  ..+...+|+.  ..+.+.|+|.|+..
T Consensus       238 ~g~~~~~g~~V~~V~~~---spA~~a-GL~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~  304 (318)
T 1te0_A          238 GGIDQLQGIVVNEVSPD---GPAANA-GIQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK  304 (318)
T ss_dssp             SCSSSCCCEEEEEECTT---STTTTT-CCCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred             ccCCCCCcEEEEEeCCC---ChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            33333468999999999   776654 599999999999998765  4777888875  46789999999864

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.16  E-value=0.00051  Score=66.09  Aligned_cols=65  Identities=28%  Similarity=0.408  Sum_probs=51.7

Q ss_pred             ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829         214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  284 (333)
Q Consensus       214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~  284 (333)
                      +|+....+++|.+|.++   ++|++- .|++||+|++|||+...  +..+...+|..  ..+.+.|+|.|+..
T Consensus       257 ~gl~~~~G~~V~~V~~~---spA~~a-GL~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~  323 (345)
T 3stj_A          257 FNLDVQRGAFVSEVLPG---SGSAKA-GVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK  323 (345)
T ss_dssp             TTCSCCSSEEEEEECTT---SHHHHH-TCCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             cCCCCCceEEEEEeccC---ChHHHc-CCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            34433468999999999   777655 49999999999998876  56677788876  46799999999864

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=97.15  E-value=0.00014  Score=66.02  Aligned_cols=69  Identities=14%  Similarity=0.100  Sum_probs=52.2

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.+.++.+       +.+++|+.|.+||.|         +.. +|++||+ +.||++.+.+.+  ..+.+++..+
T Consensus        19 ~~glG~~l~~~~~-------~~gv~V~~V~~gSpA---------~~a-GL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g   81 (216)
T 2krg_A           19 PSGYGFNLHSDKS-------KPGQFIRSVDPDSPA---------EAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (216)
T ss_dssp             SSSSCEEECCCSS-------SCSCBEEEECTTSHH---------HHH-TCCTTCBCCEETTEECTTCCTHHHHHHHHHHC
T ss_pred             CCCceEEEEecCC-------CCCeEEEEeCCCChH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhcC
Confidence            3589999987653       458999999998754         433 3799999 699999999553  4455666667


Q ss_pred             Cce-EEEEEE
Q psy9829         164 NCI-SAQIKR  172 (333)
Q Consensus       164 ~~v-~L~v~R  172 (333)
                      ..+ .|+|.|
T Consensus        82 ~~v~~l~V~R   91 (216)
T 2krg_A           82 DETKLLVVDR   91 (216)
T ss_dssp             SEEEEEECCH
T ss_pred             CeEEEEEEEE
Confidence            778 888876

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.12  E-value=0.00061  Score=60.71  Aligned_cols=60  Identities=13%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCC-CEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEG-DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~G-D~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .|++|.+|.++   ++|++.| |+.| |+|++|||+.+.+.+.....-+-....+.+.|+|.|+.
T Consensus        16 ~G~~V~~V~~~---SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   76 (209)
T 3rle_A           16 EGYHVLRVQEN---SPGHRAG-LEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSK   76 (209)
T ss_dssp             EEEEEEEECTT---SHHHHTT-CCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETT
T ss_pred             CEEEEEEECCC---CHHHHCC-CCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecC
Confidence            47999999999   8877665 9999 99999999998887654432222344678999998864

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.12  E-value=0.00071  Score=52.89  Aligned_cols=56  Identities=16%  Similarity=0.056  Sum_probs=43.9

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      .+.+++|++|.+||         ||+.  +|++||+ +.+|+..+++......+++.  .+..+.|.|.|
T Consensus         3 ~~~Gv~V~~V~~~s---------pA~~--GL~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R   61 (94)
T 2kl1_A            3 EAKGVYVMSVLPNM---------PAAG--RLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIR   61 (94)
T ss_dssp             CCCCEECCCCCTTS---------TTBT--TBCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEE
T ss_pred             CCCcEEEEEECCCC---------hHHh--CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            46789999999976         5554  4899999 58999998887655556665  47789999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.05  E-value=0.00043  Score=59.61  Aligned_cols=73  Identities=11%  Similarity=0.045  Sum_probs=57.4

Q ss_pred             CCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhcc
Q psy9829          11 SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRVL   83 (333)
Q Consensus        11 ~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~~   83 (333)
                      ...+..+.+++++++|++||+|++++.+..+......+.+||+.||+.+.+. ++..|..++.+.+..+..+..
T Consensus        82 ~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~  155 (205)
T 3tr0_A           82 HYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAR  155 (205)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHH
T ss_pred             cccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4556778999999999999999999999998887778899999999876654 777776665555555554443

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.04  E-value=0.00094  Score=53.07  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV  283 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~  283 (333)
                      +++|....|+   ++|++- .|++||+|++|||+.+.+..  +...+++.  ..+.+.|+|.|+.
T Consensus        38 G~~V~~~~pa---s~A~~a-Gl~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g   96 (105)
T 2i4s_A           38 GYRVSPGKDP---VLFESI-GLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDG   96 (105)
T ss_dssp             EEEEEECSCT---HHHHHH-TCCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEETT
T ss_pred             EEEEecCCCC---CHHHHc-CCCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEECC
Confidence            4566666665   555554 59999999999999988764  44455554  4568999999875

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=96.99  E-value=0.0005  Score=68.55  Aligned_cols=60  Identities=15%  Similarity=0.276  Sum_probs=49.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~~  285 (333)
                      .+++|.+|.++   ++|++.| |+.||+|++|||+.+.+.  .+....+..  ..+.+.|+|.|+...
T Consensus       282 ~G~~V~~V~~~---spA~~aG-L~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g~~  343 (451)
T 3pv2_A          282 QGALVSQVNPN---SPAELAG-LKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERDNKP  343 (451)
T ss_dssp             CCEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             ceEEEEecCCC---ChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            68999999999   8888776 999999999999988765  566666664  457999999997643

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.99  E-value=0.00047  Score=60.42  Aligned_cols=76  Identities=18%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             CCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhccc
Q psy9829           9 KCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRVLF   84 (333)
Q Consensus         9 ~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~~q   84 (333)
                      .+.+.++.+.|++++++++.|++|+.+++++.+....+.|.++|++||+...|. +++.+.+++++.+..+..+...
T Consensus        78 ~n~~g~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~  154 (198)
T 1lvg_A           78 GNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART  154 (198)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             CccCCCCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            344567889999999999999999999999888877888999999999987766 5555666666667666555443

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=96.93  E-value=0.00043  Score=54.10  Aligned_cols=53  Identities=15%  Similarity=0.132  Sum_probs=41.6

Q ss_pred             ceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc--CCceEEEEEE
Q psy9829         109 STKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA--HNCISAQIKR  172 (333)
Q Consensus       109 ~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~--g~~v~L~v~R  172 (333)
                      |++|++|.|||         ||+.  +|++||+ +.+|+..+++......+++..  +..++|.|.|
T Consensus         2 Gv~V~~V~~~s---------pA~~--GL~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R   57 (91)
T 2kjp_A            2 GIYASSVVENM---------PAKG--KIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIER   57 (91)
T ss_dssp             CSSCCCCCCSS---------CCSS--CCCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEEEES
T ss_pred             ceEEEEECCCC---------hHHH--cCCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEEEEE
Confidence            68999999976         5555  3899999 589999998876555666653  6779999987

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=96.81  E-value=0.0022  Score=50.41  Aligned_cols=56  Identities=9%  Similarity=0.062  Sum_probs=43.7

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      .+.|++|..|.|||         ||+ . +|++||+ +.+|+..+.+......+|..  .+..+.|.|.|
T Consensus         5 ~~~Gv~V~~V~~~s---------pA~-~-GL~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R   63 (100)
T 3i18_A            5 TYDGVYVMSVKDDV---------PAA-D-VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKH   63 (100)
T ss_dssp             CCCCEEEEEECTTS---------GGG-G-TCCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             eCCCEEEEEeCCCC---------chH-H-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            46799999999976         455 3 5899999 58999998887655556654  46778999887

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=96.74  E-value=0.0015  Score=52.11  Aligned_cols=59  Identities=19%  Similarity=0.327  Sum_probs=44.7

Q ss_pred             CCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEE
Q psy9829         103 LANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKR  172 (333)
Q Consensus       103 ~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R  172 (333)
                      |+..+.+++|++|.+||.         |+. .+|++||+ +.+|+..+++......+++. +..+.|.|.|
T Consensus        30 ~~~~~~gv~V~~V~~~sp---------A~~-aGl~~GD~I~~ing~~v~~~~~~~~~l~~-~~~v~l~v~R   89 (113)
T 2pzd_A           30 FPDVQHGVLIHKVILGSP---------AHR-AGLRPGDVILAIGEQMVQNAEDVYEAVRT-QSQLAVQIRR   89 (113)
T ss_dssp             CCCCSSCEEEEEEBTTSH---------HHH-HTCCTTCEEEEETTEECCSHHHHHHHHHH-CSSEEEEEEE
T ss_pred             ccCCCCCeEEEEeCCCCh---------HHH-cCCCCCCEEEEECCEECCCHHHHHHHHhC-CCeEEEEEEE
Confidence            334568999999999764         443 35799999 58999999877555556655 6778999987

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=96.72  E-value=0.002  Score=61.16  Aligned_cols=58  Identities=19%  Similarity=0.382  Sum_probs=48.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.++.++   ++|++- .|++||+|++|||+...+  .++..++|+. .+.+.|.|.|+..
T Consensus       256 ~gv~V~~V~~~---spA~~a-Gl~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~  313 (325)
T 1lcy_A          256 HGVLIHKVILG---SPAHRA-GLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE  313 (325)
T ss_dssp             SCEEEEEECTT---SHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTE
T ss_pred             CCeEEEEeCcC---ChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence            57999999999   777654 499999999999988764  5777888876 5899999999763

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=96.71  E-value=0.0041  Score=58.66  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=47.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEec-cCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRR-EVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R-~~~  284 (333)
                      .+++|.++.++   ++|++- .|++||+|++|||+.+.+.  .+...+|..  ..+.+.|+|.| +..
T Consensus       242 ~g~~V~~v~~~---spA~~a-Gl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          242 LGAKIVEVVAG---GAAANA-GVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             SSEEEEEECTT---STTTTT-TCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             CceEEEEECCC---ChHHHc-CCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            47999999999   766654 5999999999999987754  566677765  36789999999 653

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=96.51  E-value=0.0012  Score=65.05  Aligned_cols=56  Identities=16%  Similarity=0.268  Sum_probs=47.7

Q ss_pred             EEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       222 IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      ++|..|.++   ++|++-| |++||+|++|||+.+.++.   ...+|+.....|+|.|.|+..
T Consensus        92 ~~V~~V~~g---sPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           92 ALISYVVPG---SPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEEECTT---SHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             EEEEEeCCC---ChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            789999999   8888776 9999999999999988875   456777766789999988754

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=96.39  E-value=0.0035  Score=60.02  Aligned_cols=60  Identities=12%  Similarity=0.315  Sum_probs=47.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCC-----------CCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAE-----------GDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~-----------GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~  285 (333)
                      .|++|.++.++   ++|++-| |+.           ||+|++|||+...++  +|....|...  .+.+.|+|.|+...
T Consensus       251 ~Gv~V~~V~~~---spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~  323 (348)
T 3qo6_A          251 SGVLVLDAPPS---GPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHK  323 (348)
T ss_dssp             SSEEEEECCSS---SHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred             ceEEEEEecCC---ChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEE
Confidence            58999999999   7665543 666           999999999988765  5677777653  57999999998643

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=96.39  E-value=0.0024  Score=63.54  Aligned_cols=64  Identities=22%  Similarity=0.352  Sum_probs=50.3

Q ss_pred             cccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829         215 GIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP  284 (333)
Q Consensus       215 G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~  284 (333)
                      |+.-..+++|.+|.++   ++|++. .|++||+|++|||+.+.+.  .+...+|..  ..+.+.|+|.|+..
T Consensus       281 gl~~~~G~~V~~V~~g---spA~~A-GL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~  346 (448)
T 1ky9_A          281 KVDAQRGAFVSQVLPN---SSAAKA-GIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK  346 (448)
T ss_dssp             CCTTCCSEECCCCTTC---SSSTTT-TCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CCCCCCceEEEEeccC---CHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            3333358999999999   777664 6999999999999988876  466666764  46889999999764

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=96.35  E-value=0.0058  Score=50.73  Aligned_cols=55  Identities=16%  Similarity=0.049  Sum_probs=43.1

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      +.+++|++|.+||         ||+  .+|++||+ +.+|+..+++......+++.  .+..++|.|.|
T Consensus        56 ~~g~~V~~V~~~s---------pA~--aGL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R  113 (134)
T 2l97_A           56 TSGVIVRSVQSNM---------PAN--GHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYR  113 (134)
T ss_dssp             CSCEEEEECSTTS---------GGG--TTSCSSCEEEEETTEECCCHHHHHHHHHHSSTTCEEEEEEEE
T ss_pred             CCCEEEEEECCCC---------chH--HCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            4789999999976         455  35899999 58999999887654455654  46789999987

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=96.34  E-value=0.0046  Score=49.23  Aligned_cols=56  Identities=9%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEE
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKR  172 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R  172 (333)
                      ...+++|+.|.+||.|         .. .+|++||+ +.+|+..+.+......+++ .+..+.|.|.|
T Consensus        33 ~~~gv~V~~V~~~spA---------~~-aGl~~GD~I~~ing~~v~~~~~~~~~l~-~g~~v~l~v~R   89 (112)
T 2p3w_A           33 VSSGIYVQEVAPNSPS---------QR-GGIQDGDIIVKVNGRPLVDSSELQEAVL-TESPLLLEVRR   89 (112)
T ss_dssp             CCSSEEEEEECTTSHH---------HH-HTCCTTCEEEEETTEECCSHHHHHHHHH-HCSSEEEEEEE
T ss_pred             CCCCeEEEEECCCChH---------HH-CCCCCCCEEEEECCEECCCHHHHHHHHh-CCCeEEEEEEE
Confidence            4679999999997754         33 34799999 5899999888755545564 46778899877

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=96.06  E-value=0.0047  Score=63.77  Aligned_cols=60  Identities=18%  Similarity=0.217  Sum_probs=45.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+++|.+|.++   ++|++- .|++||+|++|||+......+.++.+.. ..++.|.|+|.|+..
T Consensus       496 ~gv~V~~V~~~---spA~~A-GL~~GD~I~aInG~~v~~~~l~~~l~~~-~~g~~v~l~v~R~g~  555 (597)
T 4fgm_A          496 QGLDVLNVYHD---ESAYHA-GLSAGDKIIAIDHLQATEQSVKRILERY-IPGDTVTIHAFRRDE  555 (597)
T ss_dssp             TEEEEEEECTT---SHHHHH-TCCTTCEEEEETTEECCTTTHHHHHTTC-CTTCEEEEEEEETTE
T ss_pred             CeEEEEEeCCC---ChHHHC-CCCCCCEEEEECCEECCHHHHHHHHHhc-CCCCEEEEEEEECCE
Confidence            47999999999   777655 5999999999999887544444443321 246799999999753

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=96.04  E-value=0.001  Score=63.14  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=0.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+++|.++.++   ++|++. .|++||+|++|||+.+.+  .++...+|+. .+.+.|+|.|+...
T Consensus       254 ~g~~V~~v~~~---spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~  312 (332)
T 3num_A          254 SGAYIIEVIPD---TPAEAG-GLKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMVVRRGNED  312 (332)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CceEEEEeccC---CChHHc-CCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence            47899999999   777655 499999999999988754  4555666665 67899999997643

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=96.03  E-value=0.0066  Score=50.13  Aligned_cols=66  Identities=12%  Similarity=0.054  Sum_probs=41.6

Q ss_pred             ecccCCCCCC-CCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEE
Q psy9829          95 LGARGALDLA-NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQI  170 (333)
Q Consensus        95 ~gg~d~p~~~-~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v  170 (333)
                      +.|+.|..+. ....+++|+.|.+||.|         ..-  |++||+ +.+|+..+.+......+++.  .+..++|.|
T Consensus        11 ~~~~~~~~~~~~~~~gv~V~~V~~~spA---------~~a--L~~GD~Il~InG~~v~~~~dl~~~l~~~~~g~~v~l~V   79 (125)
T 2hga_A           11 SSGRENLYFQGHQPDGVQIDSVVPGSPA---------SKV--LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT   79 (125)
T ss_dssp             ------------CCCCEEEEEECSSSGG---------GGT--SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEE
T ss_pred             cccccccccccCCCCceEEEEECCCChH---------HHh--cCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE
Confidence            3466664433 24569999999997754         443  799999 58999999887655556653  466788888


Q ss_pred             EE
Q psy9829         171 KR  172 (333)
Q Consensus       171 ~R  172 (333)
                       |
T Consensus        80 -R   80 (125)
T 2hga_A           80 -D   80 (125)
T ss_dssp             -T
T ss_pred             -E
Confidence             6

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=95.73  E-value=0.011  Score=47.70  Aligned_cols=67  Identities=7%  Similarity=0.037  Sum_probs=46.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeecc--Ccchhhhhhhh--
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHN--GVVGSWQVFRI--  161 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~--gv~~a~~alr~--  161 (333)
                      ..|+||.+..         .+.+.+|.+|.|||.|         .. .+|++||+ +.||+..+.  ...+.+..++.  
T Consensus        27 ~~g~G~~l~~---------~~~~~~I~~V~~gSpA---------~~-AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~   87 (101)
T 3qik_A           27 EEDYGFDIEE---------KNKAVVVKSVQRGSLA---------EV-AGLQVGRKIYSINEDLVFLRPFSEVESILNQSF   87 (101)
T ss_dssp             SSSSSEEEEE---------ETTEEEEEEECTTSHH---------HH-HTCCTTCBEEEETTEESTTSCHHHHHHHHHHHH
T ss_pred             CCcccEEEEc---------cCCCeEEEEECCCCHH---------HH-cCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhh
Confidence            4567777653         2457899999998754         33 45799999 589999875  33344445554  


Q ss_pred             -cCCceEEEEEE
Q psy9829         162 -AHNCISAQIKR  172 (333)
Q Consensus       162 -~g~~v~L~v~R  172 (333)
                       ++..+.|.|..
T Consensus        88 ~~g~~v~LLV~~   99 (101)
T 3qik_A           88 CSRRPLRLLVAT   99 (101)
T ss_dssp             HTTCCEEEEEEC
T ss_pred             ccCCeEEEEEec
Confidence             58888888753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.57  E-value=0.0029  Score=56.10  Aligned_cols=71  Identities=13%  Similarity=0.057  Sum_probs=44.6

Q ss_pred             CCeeehHHHHHHHHcCCEEEEecCccccccccccc-cccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhh
Q psy9829          11 SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQ-FYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSR   81 (333)
Q Consensus        11 ~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~-l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer   81 (333)
                      ...+..+.+++++++++.||||+++++...++..- ..+.+||+.||+.+.+. +++.|..++.+.+..+..+
T Consensus       103 ~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~  175 (231)
T 3lnc_A          103 FYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKG  175 (231)
T ss_dssp             EEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHH
T ss_pred             cCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            44567788999999999999999999988886543 35688999999987765 5666544444444444433

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=95.45  E-value=0.01  Score=45.13  Aligned_cols=55  Identities=15%  Similarity=0.057  Sum_probs=39.8

Q ss_pred             CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh-cCCceEEEEEE
Q psy9829         108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI-AHNCISAQIKR  172 (333)
Q Consensus       108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~-~g~~v~L~v~R  172 (333)
                      ...+|++|.+||.|         .. .+|++||+ +.+|+..+++......+++. .+..+.|.|.|
T Consensus         4 ~~~~V~~v~~~spA---------~~-aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R   60 (91)
T 2zpm_A            4 IEPVLENVQPNSAA---------SX-AGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIER   60 (91)
T ss_dssp             --CBCSEECTTSHH---------HH-TTCCTTCEEEEETTEECCCHHHHHHHHHHCTTCCEEEEEEE
T ss_pred             cCeEEEEECCCChH---------Hh-cCCCCCCEEEEECCeEcCCHHHHHHHHhcCCCCeEEEEEEE
Confidence            34689999997754         32 24799999 58999998887655556654 35678899877

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=95.28  E-value=0.015  Score=44.33  Aligned_cols=55  Identities=9%  Similarity=0.074  Sum_probs=40.0

Q ss_pred             CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      .|+.|+.+.|+|.|         +. .+|++||+ +.+|+..+++......+++.  .+..+.|.|.|
T Consensus        19 ~G~~V~~~~~~s~A---------~~-aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R   76 (87)
T 2i6v_A           19 LGYRVSPGKDPVLF---------ES-IGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER   76 (87)
T ss_dssp             EEEEEEECSCHHHH---------HH-TTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEE
T ss_pred             EEEEEEeCCCCCHH---------HH-CCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            37888888886543         32 35899999 58999999887544455543  46678999877

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=95.18  E-value=0.025  Score=53.55  Aligned_cols=60  Identities=18%  Similarity=0.324  Sum_probs=45.5

Q ss_pred             CCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEE
Q psy9829         102 DLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKR  172 (333)
Q Consensus       102 ~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R  172 (333)
                      .+++.+.|++|++|.|||.         |+. .+||+||+ +.+|+..+.+......+++. +..+.|.|.|
T Consensus       250 ~~~~~~~gv~V~~V~~~sp---------A~~-aGl~~GDvI~~ing~~v~~~~~l~~~l~~-~~~v~l~v~R  310 (325)
T 1lcy_A          250 SFPDVQHGVLIHKVILGSP---------AHR-AGLRPGDVILAIGEQMVQNAEDVYEAVRT-QSQLAVQIRR  310 (325)
T ss_dssp             TSCCCSSCEEEEEECTTSH---------HHH-HTCCTTCEEEEETTEECCSHHHHHHHHTT-CSSEEEEEEE
T ss_pred             ccccCCCCeEEEEeCcCCh---------HHH-CCCCCCCEEEEECCEEcCCHHHHHHHHhC-CCeEEEEEEE
Confidence            3444467999999999774         443 45899999 58999998887655556665 5778999987

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=95.18  E-value=0.019  Score=56.61  Aligned_cols=72  Identities=7%  Similarity=-0.005  Sum_probs=51.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCc
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNC  165 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~  165 (333)
                      .+||||.+.-..+++    .+-.++|..|.|||.|         +. .+|++||+ +.||+..+.+.. ...+++..+..
T Consensus        73 ~~G~~~~l~~~~~~~----~~~~~~V~~V~~gsPA---------~~-AGL~~GD~I~~InG~~v~~~~-~~~~l~~~g~~  137 (403)
T 3k50_A           73 SYGFDYTLYKVLDND----TAYNALISYVVPGSPA---------EE-AGLQRGHWIMMMNGDYITKKV-ESELLQGSTRQ  137 (403)
T ss_dssp             BCSEEEEEEECTTCS----SCEEEEEEEECTTSHH---------HH-TTCCTTCEEEEETTBCBCTTT-GGGGTSCSCEE
T ss_pred             ccceEEEEEEcCCCC----cceeEEEEEeCCCChH---------HH-cCCCCCCEEEEECCEEccchh-HHHHhhCCCCE
Confidence            778888887443321    1235899999997754         44 34799999 589999988874 44555556667


Q ss_pred             eEEEEEEe
Q psy9829         166 ISAQIKRT  173 (333)
Q Consensus       166 v~L~v~R~  173 (333)
                      ++|.|.|.
T Consensus       138 v~l~v~R~  145 (403)
T 3k50_A          138 LQIGVYKE  145 (403)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            88888774

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=95.06  E-value=0.022  Score=58.17  Aligned_cols=66  Identities=18%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             cccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCH--------HHHHHHHH--hcCCceEEEEeccCC
Q psy9829         215 GIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSV--------KEARKLID--SSKEKLSLTIRREVP  284 (333)
Q Consensus       215 G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~--------~eA~~~l~--~s~~~v~L~V~R~~~  284 (333)
                      |+.-..|++|.+|.|+   ++|++ + |++||+|++|||+...+...        .+-..++.  ...+++.|+|.|+..
T Consensus       272 ~l~~~~Gv~V~~V~~~---spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk  346 (539)
T 4fln_A          272 KVPTNEGVLVRRVEPT---SDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGE  346 (539)
T ss_dssp             TCSSSBCEEEEEECTT---SGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTE
T ss_pred             CCCCcCceeeecccCC---ChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCE
Confidence            4433468999999999   88765 4 99999999999987644210        11123333  357899999999864


Q ss_pred             C
Q psy9829         285 R  285 (333)
Q Consensus       285 ~  285 (333)
                      .
T Consensus       347 ~  347 (539)
T 4fln_A          347 H  347 (539)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=94.93  E-value=0.023  Score=44.27  Aligned_cols=52  Identities=6%  Similarity=-0.160  Sum_probs=38.8

Q ss_pred             EeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc-C-CceEEEEEE
Q psy9829         111 KPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA-H-NCISAQIKR  172 (333)
Q Consensus       111 ~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~-g-~~v~L~v~R  172 (333)
                      +|..|.+||.|         .. .+|++||+ +.+|+..+........+|... + ..+.|.|.|
T Consensus         5 ~V~~V~~~spA---------~~-aGl~~GD~I~~ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R   59 (95)
T 3id1_A            5 VVGEIAANSIA---------AE-AQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAP   59 (95)
T ss_dssp             BEEEECTTSHH---------HH-TTCCTTCEEEEETTEECSSHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             EEEeeCCCCHH---------HH-cCCCCCCEEEEECCEECCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence            68899997754         33 35799999 589999988876555666543 2 578999987

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=94.46  E-value=0.052  Score=58.04  Aligned_cols=61  Identities=7%  Similarity=0.073  Sum_probs=47.0

Q ss_pred             CeEEEEEEccCc-----ccCccccCC-CCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRL-----DNNASAGTH-QLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~-----~ag~Aa~dg-~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~  283 (333)
                      .+++|.++.++.     ..++|++-| .|+ ||+|++|||+.+.+++  ++..+|+.. ...|.|+|.|+.
T Consensus       748 ~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~v~r~~  815 (1045)
T 1k32_A          748 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKG  815 (1045)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSS
T ss_pred             CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEEEECCC
Confidence            578999999851     115666655 499 9999999999988886  677788764 458999999865

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=94.36  E-value=0.059  Score=52.18  Aligned_cols=69  Identities=13%  Similarity=0.081  Sum_probs=48.4

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-cC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-AH  163 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-~g  163 (333)
                      .|+|+.+.--.      ..+.+++|++|.|||.|         +. .+|++||+ +.||+..+.+..  .....++. .+
T Consensus        85 ~giG~~~~~~~------~~~~~~~V~~v~~~spA---------~~-aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g  148 (388)
T 1fc6_A           85 TGVGLEITYDG------GSGKDVVVLTPAPGGPA---------EK-AGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEAD  148 (388)
T ss_dssp             BBCSEEEEECT------TCSSCEEEEEECTTSHH---------HH-TTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTT
T ss_pred             EEEEEEEEEee------cCCCcEEEEEeCCCChH---------HH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            37888876321      13578999999998754         43 24799999 589999998863  33344542 46


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..++|.|.|
T Consensus       149 ~~v~l~v~r  157 (388)
T 1fc6_A          149 SQVEVVLHA  157 (388)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            668888877

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=94.34  E-value=0.045  Score=43.17  Aligned_cols=54  Identities=9%  Similarity=0.090  Sum_probs=39.0

Q ss_pred             ceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         109 STKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       109 ~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      |+.|+.+.|+|.|         .. .+|++||+ +.+|+..+++......+++.  .+..+.|.|.|
T Consensus        38 G~~V~~~~pas~A---------~~-aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R   94 (105)
T 2i4s_A           38 GYRVSPGKDPVLF---------ES-IGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER   94 (105)
T ss_dssp             EEEEEECSCTHHH---------HH-HTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEE
T ss_pred             EEEEecCCCCCHH---------HH-cCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence            6678887775533         32 45899999 58999999888655455554  45678999877

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=94.27  E-value=0.051  Score=51.05  Aligned_cols=56  Identities=11%  Similarity=0.084  Sum_probs=43.7

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      +.+++|++|.|||         ||+. .+|++||+ +.+|+..+.+......+++.  .+..++|.|.|
T Consensus       243 ~~g~~V~~V~~~s---------pA~~-aGL~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R  301 (318)
T 1te0_A          243 LQGIVVNEVSPDG---------PAAN-AGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMR  301 (318)
T ss_dssp             CCCEEEEEECTTS---------TTTT-TCCCTTCCEEEETTEECCCHHHHHHHHHTSCTTCEEEEEEES
T ss_pred             CCcEEEEEeCCCC---------hHHH-CCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            5799999999976         5554 35899999 58999998887555556654  46779999987

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.12  E-value=0.052  Score=47.99  Aligned_cols=75  Identities=11%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             CCeeehHHHHHHHHcCCEEEEecCccccccccccc--cccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhcccc
Q psy9829          11 SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQ--FYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRVLFP   85 (333)
Q Consensus        11 ~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~--l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~~qE   85 (333)
                      ...+..+.++++++.++.|++|+.+++.++++.+-  ..|..+|+++|+...|. .++.+..++.+.+..+..+...+
T Consensus        99 ~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~  176 (218)
T 1z6g_A           99 FYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE  176 (218)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            34566778999999999999999999999888665  56799999999988777 56666666666666666554433

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=93.53  E-value=0.1  Score=48.90  Aligned_cols=67  Identities=15%  Similarity=0.031  Sum_probs=47.9

Q ss_pred             eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCc
Q psy9829          89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNC  165 (333)
Q Consensus        89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~  165 (333)
                      .||+.+.-      . ..+.+++|.+|.|||.         |+. .+|++||+ +.+|+..+++...-..+++.  .+..
T Consensus       230 ~lGi~~~~------~-~~~~g~~V~~v~~~sp---------A~~-aGl~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~  292 (324)
T 1y8t_A          230 SLGVQVTN------D-KDTLGAKIVEVVAGGA---------AAN-AGVPKGVVVTKVDDRPINSADALVAAVRSKAPGAT  292 (324)
T ss_dssp             ECCEEEES------C-SSSSSEEEEEECTTST---------TTT-TTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCE
T ss_pred             ccceEeee------c-cCCCceEEEEECCCCh---------HHH-cCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCE
Confidence            67776641      1 1357899999999764         454 35899999 58999998887544445543  4677


Q ss_pred             eEEEEEE
Q psy9829         166 ISAQIKR  172 (333)
Q Consensus       166 v~L~v~R  172 (333)
                      ++|.|.|
T Consensus       293 v~l~v~R  299 (324)
T 1y8t_A          293 VALTFQD  299 (324)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9999977

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=92.89  E-value=0.11  Score=44.16  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=36.1

Q ss_pred             eeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhH-HhhhcC
Q psy9829          13 IIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNV-KELRAG   67 (333)
Q Consensus        13 ~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~l-k~lr~~   67 (333)
                      .+..+.+++++++|+.||+|........++.....+++||+.|++.+.+ +++..|
T Consensus        84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R  139 (207)
T 2j41_A           84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGR  139 (207)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC-----------
T ss_pred             CCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhc
Confidence            3566789999999999999999888777765433568999998875543 355444

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=92.74  E-value=0.067  Score=51.23  Aligned_cols=56  Identities=11%  Similarity=0.052  Sum_probs=43.4

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      +.|++|++|.|||.         |+. .+|++||+ +.+|+..+++...-..+++.  .+..++|.|.|
T Consensus       262 ~~G~~V~~V~~~sp---------A~~-aGL~~GDvI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R  320 (345)
T 3stj_A          262 QRGAFVSEVLPGSG---------SAK-AGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR  320 (345)
T ss_dssp             CSSEEEEEECTTSH---------HHH-HTCCTTCEECEETTEECSCHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             CceEEEEEeccCCh---------HHH-cCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            57999999999764         443 45799999 58999998877555455554  57789999988

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=92.28  E-value=0.025  Score=53.51  Aligned_cols=57  Identities=9%  Similarity=0.089  Sum_probs=0.0

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEEe
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKRT  173 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R~  173 (333)
                      .+.|++|.+|.+||         ||+. .+|++||+ +.+|+..+.+......+++. +..++|.|.|.
T Consensus       252 ~~~g~~V~~v~~~s---------pA~~-aGl~~GD~I~~ing~~v~~~~~~~~~l~~-~~~v~l~v~R~  309 (332)
T 3num_A          252 VISGAYIIEVIPDT---------PAEA-GGLKENDVIISINGQSVVSANDVSDVIKR-ESTLNMVVRRG  309 (332)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             CCCceEEEEeccCC---------ChHH-cCCCCCCEEEEECCEECCCHHHHHHHHhC-CCeEEEEEEEC
Confidence            45799999999976         4554 35799999 58999998877655556654 66788988873

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=90.33  E-value=0.19  Score=51.73  Aligned_cols=54  Identities=6%  Similarity=0.006  Sum_probs=40.1

Q ss_pred             CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      .+++|++|.+||         ||+. .+|++||+ +.||+..|+ ...-..+++.  .+..|+|.|.|
T Consensus       496 ~gv~V~~V~~~s---------pA~~-AGL~~GD~I~aInG~~v~-~~~l~~~l~~~~~g~~v~l~v~R  552 (597)
T 4fgm_A          496 QGLDVLNVYHDE---------SAYH-AGLSAGDKIIAIDHLQAT-EQSVKRILERYIPGDTVTIHAFR  552 (597)
T ss_dssp             TEEEEEEECTTS---------HHHH-HTCCTTCEEEEETTEECC-TTTHHHHHTTCCTTCEEEEEEEE
T ss_pred             CeEEEEEeCCCC---------hHHH-CCCCCCCEEEEECCEECC-HHHHHHHHHhcCCCCEEEEEEEE
Confidence            479999999976         4554 35899999 689999985 3333445553  56789999988

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=90.19  E-value=0.37  Score=45.83  Aligned_cols=73  Identities=8%  Similarity=0.054  Sum_probs=49.0

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCcccccc-----------CCEE-EEceeeccCcchh
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRK-----------GDVF-HVIDTLHNGVVGS  155 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~-----------gD~I-~Vnd~dv~gv~~a  155 (333)
                      -.||+.+.--...-.+  +-.|++|.+|.|||.|         +. .+||+           ||+| .+|+..+.+...-
T Consensus       233 ~~lGi~~~~~~~~~~~--~~~Gv~V~~V~~~spA---------~~-AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl  300 (348)
T 3qo6_A          233 PILGIKFAPDQSVEQL--GVSGVLVLDAPPSGPA---------GK-AGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDL  300 (348)
T ss_dssp             EECCCEECCTTTTTTT--TCSSEEEEECCSSSHH---------HH-HTCCCCEECSSSCEECCCEECEETTBCCSSSHHH
T ss_pred             eecCcEEccchhhhhc--CCceEEEEEecCCChH---------HH-cCCccccccccCCCCCCCEEEEECCEEeCCHHHH
Confidence            3577766522211122  2369999999998765         22 23455           9995 8999999888655


Q ss_pred             hhhhhh--cCCceEEEEEE
Q psy9829         156 WQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       156 ~~alr~--~g~~v~L~v~R  172 (333)
                      ..+|..  .+..++|.|.|
T Consensus       301 ~~~l~~~~~g~~v~l~v~R  319 (348)
T 3qo6_A          301 YRILDQCKVGDEVTVEVLR  319 (348)
T ss_dssp             HHHHTTCCTTCEEEEEEEC
T ss_pred             HHHHHhCCCcCEEEEEEEE
Confidence            556643  46789999987

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=83.34  E-value=0.46  Score=45.18  Aligned_cols=31  Identities=48%  Similarity=0.914  Sum_probs=25.4

Q ss_pred             ccccCCCCCCCCccccccCCEEEEceeeccC
Q psy9829         121 LTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG  151 (333)
Q Consensus       121 a~~~~~~gpa~g~l~lr~gD~I~Vnd~dv~g  151 (333)
                      +++|+|++...++|.|+.||++.|.|+...|
T Consensus         8 Ralfdy~~~~~~eL~F~kGDil~V~dt~~~~   38 (308)
T 3kfv_A            8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPG   38 (308)
T ss_dssp             EECSCBCCCSSSBCCBCTTCEEEEEEC----
T ss_pred             EEecCcCCCCcccCCCccCCEEEEccccCCC
Confidence            5799999999999999999999998888766

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=81.60  E-value=1.5  Score=46.66  Aligned_cols=64  Identities=8%  Similarity=-0.072  Sum_probs=43.2

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCcc-ccccCCE-EEEceeeccCcchhhhhhhh-cCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEM-SFRKGDV-FHVIDTLHNGVVGSWQVFRI-AHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l-~lr~gD~-I~Vnd~dv~gv~~a~~alr~-~g~~v~L~v~R  172 (333)
                      +.+++|.+|.||... .-..++||+.-+ .|+ ||+ +.||+..+.+.......|+. .+..|+|.|.|
T Consensus       747 ~~~~~v~~v~~~~~~-~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~~~~~~~~~~~g~~v~l~v~r  813 (1045)
T 1k32_A          747 GDHYVVAKAYAGDYS-NEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGSNIYRVLSEKAGTSARIRLSG  813 (1045)
T ss_dssp             TTEEEEEEECBSCTT-STTCBCGGGGGTCCCT-TCEEEEETTEECBTTBCHHHHHHTTTTSEEEEEEEC
T ss_pred             CCEEEEEEecCCCcc-cccCCChHHHCCCCcC-CCEEEEECCEEccchhhHHHhhcCCCCCEEEEEEEC
Confidence            468999999997111 001123555432 279 999 58999999988755566654 57778999877

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=80.78  E-value=0.75  Score=43.14  Aligned_cols=39  Identities=28%  Similarity=0.640  Sum_probs=26.7

Q ss_pred             cccccCCCCCCCC-----ccccccCCEEEEceeeccCcchhhhhhhh
Q psy9829         120 HLTHFNYDQPEKG-----EMSFRKGDVFHVIDTLHNGVVGSWQVFRI  161 (333)
Q Consensus       120 ~a~~~~~~gpa~g-----~l~lr~gD~I~Vnd~dv~gv~~a~~alr~  161 (333)
                      ++|||+|++..|.     .|.|+.||+|.|.+++-++   -|+|-+.
T Consensus         8 vRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~---wWqA~~v   51 (292)
T 3tvt_A            8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDE---WWQARRV   51 (292)
T ss_dssp             EEECSCBCC---------CCCBCTTCEEEEEECCSSS---EEEECCC
T ss_pred             EEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCC---eEEEEEe
Confidence            3689999976543     3899999999998876543   4666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-09
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	8e-09
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	8e-09
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	1e-08
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	2e-08
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	3e-08
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	3e-08
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-08
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-08
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	6e-08
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	1e-07
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-07
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	3e-07
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	3e-07
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-07
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	5e-07
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	5e-07
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	5e-07
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	5e-07
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	6e-07
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	7e-07
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	8e-07
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	1e-06
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	1e-06
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	1e-06
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-06
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	2e-06
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	3e-06
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	4e-06
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-06
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	7e-06
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	7e-06
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	7e-06
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	7e-06
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	9e-06
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	9e-06
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	9e-06
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-05
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-05
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	1e-05
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-05
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-05
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	3e-05
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	5e-05
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	6e-05
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	6e-05
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	7e-05
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	7e-05
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	1e-04
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	1e-04
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-04
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	2e-04
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-04
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-04
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	4e-04
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	5e-04
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	6e-04
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-04
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	8e-04
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	0.001
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	0.002
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	0.002
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	0.002
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	0.002
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	0.002
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	0.002
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	0.003
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	0.003
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	0.004
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	0.004
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	0.004
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	0.004

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             I       + I +  +T       +  T  +  GD +L IN+    G  + EA  L+ 
Sbjct: 18  ITISGTEEPFDPIIISSLTK---GGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 74

Query: 270 SSKEKLSLTIRREVPRPTA 288
            + E ++L I+++     A
Sbjct: 75  MAGETVTLKIKKQTDAQPA 93

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 8e-09
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
            ++ ++       ++  T +L EG  +L+ N  P    + +E + +I     +  + +R 
Sbjct: 51  AYIAKIL---PGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL 107

Query: 282 EVPRP 286
           ++   
Sbjct: 108 DLNMS 112

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 8e-09
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  G      + +  +T      + A   QL++GD+++ I+   TD M+  EA+  I 
Sbjct: 15  FRLQGGKDFNMPLTISRITP----GSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 70

Query: 270 SSKEKLSLTIRRE 282
           S+   LSLT+++ 
Sbjct: 71  SASYNLSLTLQKS 83

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 273
           F I   + + V+ V         A    L + D +L++N  P +     E    I S   
Sbjct: 12  FTICCDSPVRVQAVDS----GGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS 67

Query: 274 KLSLTIRREV 283
           ++ L + R V
Sbjct: 68  EIILLVWRMV 77

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (117), Expect = 2e-08
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FRI  G      I V +VT        A    L  GD+++ IN    + M   EA+  I 
Sbjct: 20  FRISGGRDFHTPIIVTKVTE----RGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIR 75

Query: 270 SSKEKLSLTIRREVPRPTA 288
            S   L L + R    P++
Sbjct: 76  QSASPLRLQLDRS-SGPSS 93

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 3e-08
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F +  G      + V  V       A     +L EGD ++ IN       +  +    I 
Sbjct: 24  FNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 81

Query: 270 SSKEKLSLTIRREVPRPTAYQ 290
           +S E+ S  +   V     Y 
Sbjct: 82  ASCERHSGELMLLVRPNAVYD 102

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I + +V              L E D ++ +N  P + +    A + +  S +  ++ ++R
Sbjct: 41  IVISDVLP-----GGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 95

Query: 282 EVPRPTA 288
                 A
Sbjct: 96  PRKVQVA 102

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FRI  G   G  I +  V   +   ++    +L  GD L+ ++  P  G + +    L+ 
Sbjct: 24  FRILGGDEPGQPILIGAV---IAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMH 80

Query: 270 SSKE--KLSLTIRREVP 284
            +    +++LT+RR+V 
Sbjct: 81  HAARNGQVNLTVRRKVL 97

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F I  G      + VK V   + +  +A   ++  GDV++ IN     G +  +  KL  
Sbjct: 34  FTIIGGDEPDEFLQVKSV---IPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ 90

Query: 270 SSK--EKLSLTIRREVPRPTAYQESTT 294
           S    + ++L + R  P P   ++   
Sbjct: 91  SVPIGQSVNLVLCRGYPLPFDPEDPAN 117

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+K V   L+++ +     L  GD +++++       S ++A + I  +   +   ++ 
Sbjct: 38  IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 94

Query: 282 EV 283
            +
Sbjct: 95  II 96

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFVK V    +  A+    ++   D +++++     G++   A  ++ ++K  +   I R
Sbjct: 35  IFVKTV---TEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 91

Query: 282 EVP 284
           E P
Sbjct: 92  EKP 94

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F I  G      ++V  +    ++  +    ++  GD +++IN   T  M+   A +LI 
Sbjct: 26  FSIRGGREYKMDLYVLRL---AEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK 82

Query: 270 SSKEKLSLTIRREVPR 285
           S   ++ L ++R    
Sbjct: 83  SGGRRVRLLLKRGTGS 98

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             I  G      I + ++       A+  T  L  GD +L +N       +  EA + + 
Sbjct: 20  ISIKGGRENKMPILISKI---FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 76

Query: 270 SSKEKLSLTIRR 281
            + +++ L ++ 
Sbjct: 77  KTGKEVVLEVKY 88

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  G      + +  +         A    +  GDV+L I+     GM+  EA+  I 
Sbjct: 19  FRLQGGKDFNMPLTISSLKD----GGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIK 74

Query: 270 SSKEKLSLTIRREVPRP 286
           +    L++T++R     
Sbjct: 75  ACTGSLNMTLQRASAAA 91

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFV  V           +  L  GD +++ N +    +   +A  L+ + +  + L I R
Sbjct: 45  IFVTRVQPE-----GPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99

Query: 282 EVP 284
           EV 
Sbjct: 100 EVS 102

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 213 DFGI-ILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKL 267
           DFG  +        ++VK +              L   D LL++N+  T          L
Sbjct: 20  DFGFSVADGLLEKGVYVKNIRP----AGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPL 75

Query: 268 IDSSKEKLSLTIRR 281
           I  S  KL L I R
Sbjct: 76  IAESGNKLDLVISR 89

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+ ++       A+A   +L   D +L +N      ++   A + +  +   + L + R
Sbjct: 33  IFITKII---PGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 89

Query: 282 EVP 284
             P
Sbjct: 90  RKP 92

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 203 VVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVK 262
           +     V     G+     IF+  +        +  T  LA  D ++++N     G ++ 
Sbjct: 21  IRDGTSVRVTASGLEKQPGIFISRLVP---GGLAESTGLLAVNDEVIEVNGIEVAGKTLD 77

Query: 263 EARKLIDSSKEKLSLTIRR 281
           +   ++ ++   L +T++ 
Sbjct: 78  QVTDMMVANSSNLIITVKP 96

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
           G+ + + ++      + +  T  L  GD LL I+N   D  S+++A +++   ++ + L 
Sbjct: 37  GDPLVISDI---KKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 93

Query: 279 IRRE 282
           IR++
Sbjct: 94  IRKD 97

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 6e-07
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+  V+        A    +  GD LL++N     G    EA + +  +   + + + R
Sbjct: 41  IFISRVSE----EGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 96

Query: 282 E 282
           E
Sbjct: 97  E 97

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (107), Expect = 7e-07
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 214 FGIILG-----NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
             +  G      K+ V  V    +  A+     + +GD ++ IN       ++ EA   +
Sbjct: 32  LALEGGVDSPVGKVVVSAV---YEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88

Query: 269 DSSKEKLSLTIRREVPR--PTAYQESTTL 295
             +  +    I   V    P  Y +  T 
Sbjct: 89  QKAWNQGGDWIDLVVAVCPPKEYDDELTF 117

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 8e-07
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 214 FGI-ILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
           +G  + G K  + +    ++  + A    L  GD L+++N    +  + ++    I ++ 
Sbjct: 16  YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL 75

Query: 273 EKLSLTIRRE 282
             + L +   
Sbjct: 76  NAVRLLVVDP 85

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IF+K +   + ++ +    +L  GD +L +N       + +    LI  +  K+ L I+ 
Sbjct: 37  IFIKGI---VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 93

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
           G  +++ EV   +         +L  GD L+ IN     G+S +EA+ +I  +K +    
Sbjct: 33  GPLVYIHEV---IPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESP 89

Query: 279 IRREVPR 285
                 R
Sbjct: 90  WEIAFIR 96

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           FR+  GI     + +  +T      + A    L  GDV+L I+   T+ M+  +A+  I 
Sbjct: 19  FRLSGGIDFNQPLVITRITP----GSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK 74

Query: 270 SSKEKLSLTIRREVPRP 286
           ++  +L L I R   R 
Sbjct: 75  AASYQLCLKIDRAETRL 91

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I+VK V   +   A+    +LA GD LL ++     G+S + A +L+  +   ++L + +
Sbjct: 33  IYVKSV---VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 89

Query: 282 E 282
           +
Sbjct: 90  Q 90

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 214 FGIIL---GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
            G  +    + + +  +   +   A+  +  L EGD +L+IN     G  V E   L+  
Sbjct: 32  LGATVRNEMDSVIISRI---VKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSD 88

Query: 271 SKEKLSLTI 279
               L+  +
Sbjct: 89  MHGTLTFVL 97

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
            +++ V         A    L  GD L+++N      +  ++   +I      L + +  
Sbjct: 45  QYLESVDE----GGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 100

Query: 282 E 282
            
Sbjct: 101 V 101

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFV  +       A+     L  GD +L IN           A  L+ ++   ++L + R
Sbjct: 40  IFVSRIAE---GGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96

Query: 282 EVPR 285
           E   
Sbjct: 97  EAGS 100

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             I  G   G  I++  V       + A    L  GD +L++N      +   EA +L+ 
Sbjct: 36  LTIRGGAEYGLGIYITGVDP----GSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLK 91

Query: 270 SSKEKLSLTIRREVPRPTAYQESTTLP 296
           SS+  L LT++     P A        
Sbjct: 92  SSRH-LILTVKDVGRLPHARTTVDETK 117

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 7e-06
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 210 FRIDFGIILGNK-IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
           F +  G  L NK I V  V     N  ++    + +G+ +L IN     G +  +A  ++
Sbjct: 24  FSLAGGADLENKVITVHRV---FPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 80

Query: 269 DSSKEKLSLTIRREVPRPTAYQE 291
             ++E     I      P A  +
Sbjct: 81  RQAREPRQAVIVTRKLTPEAMPD 103

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           IFV ++    D+  +A    L   D ++++N       +  +A +   ++KE + + + R
Sbjct: 43  IFVSKIV---DSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99

Query: 282 EVPRPT 287
               P+
Sbjct: 100 RTSGPS 105

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 7e-06
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 22/113 (19%)

Query: 190 GDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK--------IFVKEVTHRLDNNASAGTH 240
           G VF V   L  G  G         G+ ++           ++++ +   L  + +A   
Sbjct: 7   GYVFTV--ELERGPSG--------LGMGLIDGMHTHLGAPGLYIQTL---LPGSPAAADG 53

Query: 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQEST 293
           +L+ GD +L++N     G+    A  LI    +K+   + +          S 
Sbjct: 54  RLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSG 106

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 14/103 (13%)

Query: 190 GDVFHVIDTLHNG-------VVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQL 242
           GD F V   L          V   +    ++  +  G  I+VK +   +   A+    ++
Sbjct: 3   GDTFEV--ELAKTDGSLGISVTVLFDKGGVNTSVRHG-GIYVKAI---IPKGAAESDGRI 56

Query: 243 AEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR-EVP 284
            +GD +L +N    +G + K+A + + ++ + + L + + +VP
Sbjct: 57  HKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 99

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 9e-06
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 214 FGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
             I+ G K  I+V +VT      + A    L  GD LL+ N       + ++AR +I   
Sbjct: 34  ISIVSGEKGGIYVSKVTV----GSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQ 89

Query: 272 KEKLSLTIRREVPRPTAYQESTT 294
            + +++  +     P  +Q S+ 
Sbjct: 90  CDTITILAQY---NPHVHQLSSH 109

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 9e-06
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F I  G   G  I+V  V       + A    L  GD +L++N+     ++  EA K + 
Sbjct: 25  FSIRGGSEHGVGIYVSLVEP----GSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK 80

Query: 270 SSKEKLSLTIRR--EVPRPT 287
            SK+ L L++     +  P+
Sbjct: 81  GSKK-LVLSVYSAGRISGPS 99

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (98), Expect = 9e-06
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 214 FGIIL-----GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
            G  +     G  IF+  +        +  + +L +GD +L +N       S ++A   +
Sbjct: 22  LGFNIVGGEDGEGIFISFILA---GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 78

Query: 269 DSSKEKLSLTIRREVPRPTAYQE 291
            ++ + +++  +    +P  Y  
Sbjct: 79  KNAGQTVTIIAQY---KPEEYSR 98

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 211 RIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
           R + G  +     +  +   +D + +    +L  GD +L +N      M   +  KLI  
Sbjct: 34  RPESGSTITVPHKIGRI---IDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD 90

Query: 271 SKEKLSLTIRREVPRP 286
           +   ++L I  +    
Sbjct: 91  AGLSVTLRIIPQEELN 106

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 209 VFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
              I     L +   V  +     ++ +     L  GD +L IN   T+  +++EA +L+
Sbjct: 27  QGGIFATETLSSPPLVCFI---EPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLL 83

Query: 269 DSSKEKLSLTIRRE 282
             +     + +  E
Sbjct: 84  RDAALAHKVVLEVE 97

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 214 FGIIL---GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
            G+++   G  + +  +   ++  A+A    L  GDVL+ + +    G +++E  KL+ +
Sbjct: 40  LGLVVIQNGPYLQISHL---INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN 96

Query: 271 SK--EKLSLTIRRE-VPRPTAYQES 292
                 L +   R  +  P  +Q+S
Sbjct: 97  ITIGTVLQIKAYRGFLEIPQEWQDS 121

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I++ ++   ++  A+    +L  GD LL +NN     +  +EA   + ++ + + L + +
Sbjct: 33  IYITKI---IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 89

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           I +  +      +    +  L  GD +L I+    +  S+ EA KL+ S  EK+ L I  
Sbjct: 44  ITIDRIKP---ASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100

Query: 282 EVPRP 286
                
Sbjct: 101 VPQSQ 105

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 214 FGIIL----GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
            GI L     N   V  + H            L  GD + +IN       +V++ +K++ 
Sbjct: 15  MGITLKMNELNHCIVARIMH---GGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71

Query: 270 SSKEKLSLTIRREVPRPTAYQE 291
             +  ++  I        +Y+E
Sbjct: 72  EMRGSITFKIVP------SYRE 87

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279
           I+VK V       A++   +L  GD ++ +N    +G++ +EA  ++  +K  ++L +
Sbjct: 32  IYVKTVF---AKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 86

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTI 279
            F+ +V      + +     L  GD +L+ N  P  G + +E   +I  SK   ++ + +
Sbjct: 49  AFITKVK---KGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIV 105

Query: 280 RR 281
            R
Sbjct: 106 SR 107

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 203 VVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVK 262
           + G  +    +        IF+ +V       A+    +L  G  LL++N     G++  
Sbjct: 27  IRGGARGHAGNPRDPTDEGIFISKV---SPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG 83

Query: 263 EARKLIDSSKEKLSLTIRREVPR 285
           EA +L+ S  + L++ +      
Sbjct: 84  EAVQLLRSVGDTLTVLVCDGFES 106

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (92), Expect = 7e-05
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
             +  +     ++ +     L  GD ++ IN  PT+  + +EA +L+  S     +T+  
Sbjct: 47  PLISYI---EADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103

Query: 282 EVPRP 286
           E    
Sbjct: 104 EFDVA 108

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 198 TLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD 257
           TL          F I  G      IF+ +V      ++ A    L EGD +L +N+    
Sbjct: 20  TLKKPPGAQLG-FNIRGGKASQLGIFISKVIP----DSDAHRAGLQEGDQVLAVNDVDFQ 74

Query: 258 GMSVKEARKLIDSSKEKLSLTIRR 281
            +   +A +++ +++E +S+ +R 
Sbjct: 75  DIEHSKAVEILKTARE-ISMRVRF 97

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             I  G I    IF+  V       + +    L  GD ++++N      +  KEA  ++ 
Sbjct: 24  CSISSGPIQKPGIFISHVKP----GSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 79

Query: 270 SSKEKLSLTIRREVPR 285
           SS+  L+++I     R
Sbjct: 80  SSRS-LTISIVAAAGR 94

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK- 272
           F +     + V  +      + SA      EGD ++ I       ++V E  KL+ S   
Sbjct: 30  FTLRGNTPVQVHFLDP----HCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG 85

Query: 273 EKLSLTIRREVPRPTA 288
           E++ + +   +   ++
Sbjct: 86  EEVEMKVVSLLDSTSS 101

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
           F +  GII             L     A    +  G  +++IN         ++   ++ 
Sbjct: 17  FSVQNGII-----------CSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILS 65

Query: 270 SSKEKLSLTI 279
           ++  ++ +  
Sbjct: 66  NAVGEIHMKT 75

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR 280
           + +  + H      +  + +L  GD ++ IN     G+ +   + +I   K +  + + 
Sbjct: 28  VIIANMMH---GGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLN 83

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI-DSSKEKLSLTIR 280
           I++ E+     N+ +A   ++ EGD +++IN          EA  L+     +  SL I 
Sbjct: 50  IYISEI---DPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVALLTSEENKNFSLLIA 104

Query: 281 REVPRPT 287
           R   +  
Sbjct: 105 RPELQLD 111

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 189 KGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVL 248
           + ++  +  T+  G  G        FG  + +    + V   LD     G   L EGD++
Sbjct: 8   QAELMTL--TIVKGAQG--------FGFTIADSPTGQRVKQILDIQGCPG---LCEGDLI 54

Query: 249 LKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVP 284
           ++IN      +S  E   ++       + SL I R   
Sbjct: 55  VEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVKEV 227
           R  ++++  E+ E+ FR G+V  V+D+ +      W   R+    G+   N  +V  +
Sbjct: 5   RALYDFEALEEDELGFRSGEVVEVLDSSNPS----WWTGRLHNKLGLFPAN--YVAPM 56

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 214 FGIILG---NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
            G+ L    N IFV+ V      N+ A    L  GD +L+IN     G S  +A K++  
Sbjct: 16  IGLRLKSIDNGIFVQLVQA----NSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 71

Query: 271 SK-EKLSLTIRREVPRP 286
           +  EK+++TIR    RP
Sbjct: 72  AFGEKITMTIRD---RP 85

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 10/62 (16%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 218 LGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 277
           +G      ++T  + ++++A    L     + +IN     G+   +   ++ +S   +++
Sbjct: 18  VGFIFKNGKITSIVKDSSAARNGLLT-EHNICEINGQNVIGLKDSQIADILSTSGTVVTI 76

Query: 278 TI 279
           TI
Sbjct: 77  TI 78

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 227 VTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-----KEKLSLTIRR 281
           +       ++    QL  G V+L++N     G   +EA ++I  +     ++ +   +  
Sbjct: 36  IVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE 95

Query: 282 EVPRPTA 288
               P++
Sbjct: 96  FNSGPSS 102

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 8e-04
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVKEV 227
           +  F++D  E GE+ FR+GD  HV+D         W         G+   N  +V  V
Sbjct: 5   QALFDFDPQEDGELGFRRGDFIHVMDNSDPN----WWKGACHGQTGMFPRN--YVTPV 56

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 6/61 (9%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 169 QIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVKE 226
           Q+    + +      E+S        +++         W +  ++   G +  N  ++++
Sbjct: 14  QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSN--YIRK 71

Query: 227 V 227
            
Sbjct: 72  T 72

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 9/55 (16%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVKEV 227
           ++Y +    E++ +KGD+  ++++ +      W    ++   G +     +VK++
Sbjct: 7   YDYQEKSPREVTMKKGDILTLLNSTNKD----WWKVEVNDRQGFVPAA--YVKKL 55

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 10/51 (19%)

Query: 172 RTHFNYD------QPEKG-EMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFG 215
           +T+ +Y        P     +SF   D  H+ +  +N     W    +  G
Sbjct: 27  KTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNN---DWWIGRLVKEG 74

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 7/56 (12%)

Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVKEVT 228
           +++   E  ++   +G  + +++         W+        G I  N  +V    
Sbjct: 9   YDFQATEAHDLRLERGQEYIILEKNDL---HWWRARDKYGSEGYIPSN--YVTGKK 59

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-------KEK 274
           IF+K +   +   A+    +L   D L+ +N     G S  EA + +  S       +  
Sbjct: 57  IFIKSI---IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGM 113

Query: 275 LSLTIRRE 282
           + L I R 
Sbjct: 114 IQLVILRR 121

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 114 SKSTGSHLT-HFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKR 172
           S S+GS +T   +Y   ++ E+   +G+V  V+            V++ A +   A    
Sbjct: 3   SGSSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQ---NMCLVYQPASDHSPAAEGW 59

Query: 173 THFNYDQPEKGEMS 186
              +   P  G  S
Sbjct: 60  VPGSILAPFSGPSS 73

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
           + + ++   +   A+  +  +  GD++L +N+ P   +S   A +++     +  + +  
Sbjct: 28  VIISDL---IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLIL 84

Query: 282 EVPRPTAYQESTTLPG 297
             P        TT  G
Sbjct: 85  RGPEGFTTHLETTFTG 100

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVKEVTH 229
           +  FN+ Q  + E+S  KGD+ +V      G    W    ++   G    N  +V+E+  
Sbjct: 14  KARFNFKQTNEDELSVCKGDIIYVTRVEEGG----WWEGTLNGRTGWFPSN--YVREIKS 67

Query: 230 RLDNNASAG 238
              +  S+G
Sbjct: 68  SERSGPSSG 76

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 168 AQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVK 225
           A+  R  F+++  ++ ++ F+KGD+  + D         W     +   G+I     +V+
Sbjct: 1   AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEE---QWWNAEDSEGKRGMIPVP--YVE 55

Query: 226 E 226
           +
Sbjct: 56  K 56

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVKEV 227
              F+Y+  +  ++ F++GD+  V+  ++      W         GI      FV++ 
Sbjct: 9   EALFSYEATQPEDLEFQEGDIILVLSKVNEE----WLEGESKGKVGIFPKV--FVEDS 60

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSW 207
           ++ +++      E+S  K DV  ++D          
Sbjct: 5   KSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRN 40

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEV 227
           ++Y+   + ++SF+KG+   +++        +  +     G I  N  +V   
Sbjct: 9   YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSN--YVAPS 59

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
             I +    G  + V            A       GDV++ ++     GMS+ +   L+ 
Sbjct: 9   LEITYDGGSGKDVVVLTPA----PGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 64

Query: 270 SSK-EKLSLTIRRE 282
                ++ + +   
Sbjct: 65  GEADSQVEVVLHAP 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.54
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.5
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.5
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.5
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.49
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.48
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.47
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.47
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.45
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.44
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.44
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.44
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.43
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.43
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.43
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.43
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.41
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.4
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.4
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.4
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.39
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.38
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.38
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.38
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.36
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.36
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.36
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.35
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.35
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.35
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.35
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.34
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.33
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.33
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.33
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.33
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.33
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.33
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.32
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.29
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.29
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.29
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	99.29
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.29
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.28
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.28
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.28
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.27
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.27
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.27
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.27
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.26
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.26
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.25
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.23
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.23
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.23
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.21
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.21
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.21
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.21
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.19
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.18
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.18
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.18
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.15
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.14
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.12
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.08
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.08
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.07
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.07
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.06
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.06
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.06
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.04
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.03
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.03
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.01
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.0
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.97
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.97
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.96
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.96
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.93
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.92
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.91
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.91
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.91
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.89
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.89
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.88
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.88
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.86
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.86
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.86
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.83
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.82
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.82
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.81
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.8
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.79
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.74
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.7
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.66
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	98.65
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.57
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.53
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.48
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.45
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.41
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.33
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.33
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.27
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.16
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.16
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.96
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	97.94
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	97.77
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	97.69
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.66
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.65
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	97.54
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	97.45
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.31
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	97.21
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	96.47
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	96.36
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	96.11
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	95.69
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	95.12
d1t0hb_	219	Guanylate kinase-like domain of the L-type calcium	89.93
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	88.88

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.2e-15  Score=118.50  Aligned_cols=65  Identities=18%  Similarity=0.329  Sum_probs=61.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~  287 (333)
                      .+|||++|.|+   ++|+++|+|++||+||+|||+++.+|||+||+++|+++.+.+.|+|.|....|+
T Consensus        41 ~gi~V~~V~~g---s~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~~~v~l~v~r~~~~Ps  105 (107)
T d1uhpa_          41 EGIFVSKIVDS---GPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPS  105 (107)
T ss_dssp             CCCEEEEECSS---SHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCSSCS
T ss_pred             CCEEEEEECCC---CHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCCCcC
Confidence            47999999999   999999999999999999999999999999999999999999999999765544

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-14  Score=113.45  Aligned_cols=61  Identities=21%  Similarity=0.350  Sum_probs=58.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+|||++|.|+   |+|+++|+|++||+|++|||+++.+++|+||.++|+++.+.++|+|.|+.
T Consensus        31 ~gi~I~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~v~L~v~Rpg   91 (92)
T d2fe5a1          31 NSIYITKIIEG---GAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG   91 (92)
T ss_dssp             CCEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCEEEEEECCC---CChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCEEEEEEECCC
Confidence            57999999999   99999999999999999999999999999999999999999999999875

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=114.34  Aligned_cols=60  Identities=17%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+|||++|.++   |+|+++|+|++||+|++|||+++.++||+||+++|+++.+.|+|+|.|-
T Consensus        36 ~gi~V~~v~~~---s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r~   95 (96)
T d2fcfa1          36 RGIFIKHVLED---SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI   95 (96)
T ss_dssp             --EEEEEECSS---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECC
T ss_pred             CCEEEEEECCC---CHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEc
Confidence            47999999999   9999999999999999999999999999999999999999999999874

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.5e-15  Score=115.23  Aligned_cols=80  Identities=16%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...||||+|.||+|+|+.. .+++|||++|.|||+         |+..++|++||+ +.||++++.+++  .++++||.+
T Consensus        10 ~~~glG~~i~gg~~~~~~~-~~~gi~I~~V~~gg~---------A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_          10 GNSGLGFSIAGGTDNPHIG-DDPSIFITKIIPGGA---------AAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             CSSCCSEEECCCSSSCSCT-TCCCCCEEEECTTSH---------HHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             CCCcCCEEEEeecCCCCcC-CCCCEEEEEECCCCh---------HHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3568999999999999986 689999999999765         455556799999 689999999996  667888989


Q ss_pred             CCceEEEEEEeec
Q psy9829         163 HNCISAQIKRTHF  175 (333)
Q Consensus       163 g~~v~L~v~R~~~  175 (333)
                      ++.++|+|+|+++
T Consensus        80 ~~~v~L~v~R~~p   92 (93)
T d1rgra_          80 GSIVRLYVMRRKP   92 (93)
T ss_dssp             TTEEEEEEECSCC
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999998653

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.6e-14  Score=113.04  Aligned_cols=63  Identities=19%  Similarity=0.276  Sum_probs=59.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+|||++|.++   |+|+++|+|++||+|++|||+++.++||+||.++|+++.+.++|+|.|..+|
T Consensus        31 ~gi~I~~V~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~L~v~R~~pP   93 (93)
T d1rgra_          31 PSIFITKIIPG---GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP   93 (93)
T ss_dssp             CCCCEEEECTT---SHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEEEEEEECSCCC
T ss_pred             CCEEEEEECCC---ChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCCC
Confidence            57999999999   9999999999999999999999999999999999999999999999997654

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.7e-14  Score=114.37  Aligned_cols=63  Identities=24%  Similarity=0.336  Sum_probs=59.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+|||++|.|+   ++|+++|+|++||+||+|||+++.++||+||+++|+.+.+.|+|+|.|....
T Consensus        38 ~gi~V~~v~~g---s~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~R~~~~  100 (105)
T d1whaa_          38 AGIFVSRIAEG---GAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGS  100 (105)
T ss_dssp             CSCEEEECCTT---SSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCCC
T ss_pred             CCEEEEEEcCC---CchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            57999999999   9999999999999999999999999999999999999999999999997654

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3e-14  Score=112.53  Aligned_cols=62  Identities=19%  Similarity=0.372  Sum_probs=59.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+|||++|.|+   |+|+++|+|++||+|++|||+++.++||+||.++|+++.+.|+|+|.|+..
T Consensus        37 ~~i~V~~V~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~v~L~v~R~~~   98 (99)
T d1ozia_          37 GGIYVKAIIPK---GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV   98 (99)
T ss_dssp             CCEEEEEECSS---SHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEECCCC
T ss_pred             CCEEEEEECCC---ChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCCCeEEEEEEeCCC
Confidence            47999999999   999999999999999999999999999999999999999999999999754

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=2.6e-14  Score=111.94  Aligned_cols=59  Identities=22%  Similarity=0.334  Sum_probs=57.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      .+|||++|.|+   ++|+++|+|++||+|++|||+++.++||+||+++|+++.+.|+|+|.|
T Consensus        35 ~gi~I~~v~~g---s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~V~R   93 (94)
T d1ihja_          35 TGIFIKGIVPD---SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT   93 (94)
T ss_dssp             EEEEEEEECTT---SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCEEEEEECCC---CHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence            47999999999   999999999999999999999999999999999999999999999987

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.8e-14  Score=111.93  Aligned_cols=62  Identities=24%  Similarity=0.372  Sum_probs=59.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+|||++|.|+   |+|+++|+|++||+|++|||+++.++||+||+++|+++.+.++|+|.|+.|
T Consensus        33 ~gi~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~kP   94 (94)
T d1wf8a1          33 LGIFVKTVTEG---GAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKP   94 (94)
T ss_dssp             EEEEEEEECTT---CHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECC
T ss_pred             CCEEEEEECCC---ChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            47999999999   999999999999999999999999999999999999999999999999753

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.45  E-value=4.6e-14  Score=110.56  Aligned_cols=60  Identities=22%  Similarity=0.398  Sum_probs=56.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc---CCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS---KEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s---~~~v~L~V~R~  282 (333)
                      .+|||++|.|+   |+|+++|+|++||+|++|||+++.++||+||+++|+.+   .+.+.|+|.|.
T Consensus        29 ~~i~I~~I~~g---g~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          29 GGIYIGSIMKG---GAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             CCEEEEEEBTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCEEEEEECCC---CcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            47999999999   99999999999999999999999999999999999875   55799999985

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-14  Score=110.75  Aligned_cols=61  Identities=26%  Similarity=0.405  Sum_probs=58.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+|||++|.|+   |+|+++|+|++||+|++|||+++.++||+||.++|+++.+.|+|+|.|..
T Consensus        31 ~gi~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~v~L~v~R~g   91 (92)
T d1t2ma1          31 LGIYVKSVVKG---GAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQG   91 (92)
T ss_dssp             CEEEEEEECTT---SHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECC
T ss_pred             CCEEEEEEcCC---ChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            47999999999   99999999999999999999999999999999999999999999999975

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-14  Score=116.96  Aligned_cols=63  Identities=24%  Similarity=0.347  Sum_probs=60.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+|||++|.|+   ++|+++|+|++||+||+|||+++.++||+||+++|+.+.+.|+|+|.|....
T Consensus        44 ~gi~I~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r~~~~  106 (111)
T d1ujua_          44 EGIFISKVSPT---GAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFES  106 (111)
T ss_dssp             CCCEEEEECTT---SHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCCC
T ss_pred             CCEEEEEECCC---ChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            57999999999   9999999999999999999999999999999999999999999999988754

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.8e-14  Score=111.61  Aligned_cols=61  Identities=23%  Similarity=0.434  Sum_probs=58.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||++|.|+   |+|+++|+|++||+|++|||+++.++||+||.++|+++.+.|+|+|.|+.
T Consensus        38 ~~i~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~v~L~V~r~~   98 (99)
T d1p1da2          38 DPLVISDIKKG---SVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE   98 (99)
T ss_dssp             CCCEEEECCSS---SHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             CCEEEEEEcCC---chhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            46999999999   99999999999999999999999999999999999999999999999864

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.5e-14  Score=112.06  Aligned_cols=61  Identities=18%  Similarity=0.334  Sum_probs=58.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .+|||++|.++   ++|+++|+|++||+|++|||+++.+|||+||+++|+++.+.++|+|.|..
T Consensus        36 ~~i~V~~v~~g---g~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~v~l~v~r~~   96 (110)
T d1um1a_          36 PGLYIQTLLPG---SPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSD   96 (110)
T ss_dssp             SSEEEEEECTT---SHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCEEEEEECCC---CHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            47999999999   99999999999999999999999999999999999999999999998864

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=9.6e-14  Score=109.22  Aligned_cols=63  Identities=24%  Similarity=0.404  Sum_probs=59.5

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||++|.++   ++|+++|+|++||+|++|||+++.+++|+||+++|+++.+.+.|+|.|....
T Consensus        28 ~~v~I~~I~~g---~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~r~~~~   90 (95)
T d1n7ea_          28 DPIIISSLTKG---GLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA   90 (95)
T ss_dssp             SCCEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCCC
T ss_pred             CCEEEEEECCC---ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            46999999999   9999999999999999999999999999999999999999999999997543

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.3e-14  Score=115.26  Aligned_cols=65  Identities=18%  Similarity=0.368  Sum_probs=59.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC-ceEEEEeccCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRREVPRPT  287 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~-~v~L~V~R~~~~~~  287 (333)
                      .+|||++|.+|   |+|+++|+|++||+||+|||+++.+|||+||+++|+++++ .|.|+|.|....+.
T Consensus        57 ~~i~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~~~~~~  122 (130)
T d1i16a_          57 KPLTINRIFKG---AASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSK  122 (130)
T ss_dssp             CCCEEEEECSS---CCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESSCCC
T ss_pred             CCEEEEEECCC---ChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcCCCCCC
Confidence            46999999999   9999999999999999999999999999999999999876 89999999865543

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-13  Score=109.43  Aligned_cols=79  Identities=13%  Similarity=0.055  Sum_probs=66.6

Q ss_pred             ccccceeeEEEecccCC---CCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhh
Q psy9829          84 FPVGSTFVGSVLGARGA---LDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQ  157 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~---p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~  157 (333)
                      .+.+.+|||+|+||.+.   |+. .+|++|||++|.|||         ||++.  ||+||+ +.||++++.+++  .+++
T Consensus        17 ~~~~~~lGf~I~Gg~~~~~~~~~-~~~~gI~I~~V~~gs---------~A~~~--L~~GD~Il~VNg~~v~~~t~~eav~   84 (103)
T d2h3la1          17 VEKDPELGFSISGGVGGRGNPFR-PDDDGIFVTRVQPEG---------PASKL--LQPGDKIIQANGYSFINIEHGQAVS   84 (103)
T ss_dssp             EECSSSCSEEEEETTTTCCCSSS-TTCCSEEEEEECTTS---------TTTTT--CCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             EccCCCCCEEEeeecCCCCCccc-cCCCCEEEEEeCCCC---------hHHhc--cCCCCEEEEECCEECCCCCHHHHHH
Confidence            34467899999999765   555 478999999999976         56664  699999 689999999997  7788


Q ss_pred             hhhhcCCceEEEEEEee
Q psy9829         158 VFRIAHNCISAQIKRTH  174 (333)
Q Consensus       158 alr~~g~~v~L~v~R~~  174 (333)
                      +||.+++.++|+|.|+.
T Consensus        85 ~l~~~~~~v~L~V~R~~  101 (103)
T d2h3la1          85 LLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHCCSEEEEEEEEEE
T ss_pred             HHHhCCCeEEEEEEEEC
Confidence            99999999999999965

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=8.6e-14  Score=108.64  Aligned_cols=59  Identities=19%  Similarity=0.302  Sum_probs=57.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R  281 (333)
                      .++||++|.|+   ++|+++|.|++||+|++|||+++.++||+||+.+|+++...++|+|.|
T Consensus        30 ~~i~V~~V~~~---~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~   88 (90)
T d1qava_          30 MPILISKIFKG---LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEEECTT---SHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEE
T ss_pred             CCEEEEEEcCC---CceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            47999999999   999999999999999999999999999999999999999999999976

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=110.76  Aligned_cols=60  Identities=23%  Similarity=0.361  Sum_probs=55.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~  282 (333)
                      .+|||++|.++   ++|+++|.|++||+|++|||+++.++||+||+++|+.++  ..++|+|.|+
T Consensus        47 ~gi~V~~v~~g---g~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~RP  108 (108)
T d2cssa1          47 LGAFITKVKKG---SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRP  108 (108)
T ss_dssp             EEEEEEEECTT---SHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEEC
T ss_pred             cCEEEEEECCC---CchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeCc
Confidence            37999999999   999999999999999999999999999999999999874  5799999884

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=1.2e-13  Score=107.98  Aligned_cols=60  Identities=27%  Similarity=0.293  Sum_probs=57.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||++|.++   ++|+++| |++||+|++|||+++.++||.+|+.+|+.+.+.++|+|.|++
T Consensus        32 ~g~~V~~V~~~---g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~R~P   91 (91)
T d1m5za_          32 KGVYVKNIRPA---GPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNP   91 (91)
T ss_dssp             SCEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEECC
T ss_pred             CCEEEEEECCC---ChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEECc
Confidence            47999999999   9998887 999999999999999999999999999999999999999974

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-13  Score=109.25  Aligned_cols=63  Identities=22%  Similarity=0.378  Sum_probs=58.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~~  285 (333)
                      .++||++|.++   ++|+++|+|++||+|++|||+++.++||+||+++|+.+.  ..|.|+|.|+...
T Consensus        34 ~~i~V~~v~~g---~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~~s   98 (103)
T d1uepa_          34 QPILIGAVIAM---GSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLS   98 (103)
T ss_dssp             SCCBEEEECTT---STTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CcEEEEEECCC---ChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeCCCC
Confidence            46999999999   999999999999999999999999999999999999874  5799999997653

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-13  Score=109.71  Aligned_cols=83  Identities=12%  Similarity=0.066  Sum_probs=69.7

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      .....||||+|.||++++++...+.+|||++|.|||         ||+..++|++||+ +.||+++|.+++  .++++|+
T Consensus        14 ~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs---------~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~   84 (105)
T d1whaa_          14 ARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGG---------AAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT   84 (105)
T ss_dssp             CCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTS---------SHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHT
T ss_pred             EECCCccCEEEEeccCCcccccCCCCEEEEEEcCCC---------chhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHH
Confidence            334568999999999998877789999999999976         4555556799999 689999999997  6677888


Q ss_pred             hcCCceEEEEEEeec
Q psy9829         161 IAHNCISAQIKRTHF  175 (333)
Q Consensus       161 ~~g~~v~L~v~R~~~  175 (333)
                      .+++.++|+|+|...
T Consensus        85 ~~~~~v~l~v~R~~~   99 (105)
T d1whaa_          85 AASPTIALLLEREAG   99 (105)
T ss_dssp             SCCSCEEEEEEECCC
T ss_pred             cCCCeEEEEEEECCC
Confidence            899999999998543

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.3e-13  Score=108.58  Aligned_cols=80  Identities=21%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||+|.||++.+++...+.+|||++|.|||         ||++  +|++||+ +.||++++.+++  .+++.||.++
T Consensus        18 ~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs---------~A~~--~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~   86 (104)
T d2csja1          18 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGG---------PADG--LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG   86 (104)
T ss_dssp             SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTS---------SHHH--HBCTTCEEEEESSCBCBTCCHHHHHHHHHHSC
T ss_pred             CCCcCEEEEcccCCCccccCCCCEEEEEECCCC---------hhhc--CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            568999999999999988889999999999976         4554  4699999 689999999996  6788889999


Q ss_pred             CceEEEEEEeeccC
Q psy9829         164 NCISAQIKRTHFNY  177 (333)
Q Consensus       164 ~~v~L~v~R~~~~~  177 (333)
                      +.+.|+|+|++...
T Consensus        87 ~~v~l~V~R~~~~~  100 (104)
T d2csja1          87 KIAAIVVKRPRKVQ  100 (104)
T ss_dssp             SEEEEEEEEEEECC
T ss_pred             CEEEEEEEeCCCCC
Confidence            99999999976544

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.9e-13  Score=108.51  Aligned_cols=63  Identities=17%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       219 ~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      ..++||++|.|+   ++|+++|.|++||+|++|||+++++++|+||+++|+++.+.|+|+|.|...
T Consensus        42 ~~~~~I~~I~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          42 TVPHKIGRIIDG---SPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             CCSCEEEEECTT---CTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSC
T ss_pred             cCCEEEEEECCC---CHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            357999999999   999999999999999999999999999999999999999999999988654

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-13  Score=108.00  Aligned_cols=60  Identities=25%  Similarity=0.370  Sum_probs=55.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .+|||++|.|+   ++|+  +.|++||+||+|||+++.++||+||+++|+++++.++|+|.|+..
T Consensus        43 ~gI~I~~V~~g---s~A~--~~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~V~R~~s  102 (103)
T d2h3la1          43 DGIFVTRVQPE---GPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVS  102 (103)
T ss_dssp             CSEEEEEECTT---STTT--TTCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEEEEEC
T ss_pred             CCEEEEEeCCC---ChHH--hccCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEECC
Confidence            57999999999   8875  469999999999999999999999999999999999999999753

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-13  Score=107.08  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||+|.||.++++.. ++.+|||++|.|||+         |+..++|++||+ +.||++++.+++  .++++||.++
T Consensus        11 ~~glG~~i~gg~~~~~~~-~~~gi~I~~v~~gg~---------A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~   80 (92)
T d2fe5a1          11 PKGLGFSIAGGIGNQHIP-GDNSIYITKIIEGGA---------AQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS   80 (92)
T ss_dssp             TTCSCEEEEECBTSCSBT-TBCCEEEEEECTTSH---------HHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC
T ss_pred             CCccCEEEEeecCCccCC-CCCCEEEEEECCCCC---------hhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCC
Confidence            468999999999999875 689999999999765         455556799999 689999999997  7788999999


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|+|+|.
T Consensus        81 ~~v~L~v~Rp   90 (92)
T d2fe5a1          81 DMVYLKVAKP   90 (92)
T ss_dssp             SEEEEEEECC
T ss_pred             CEEEEEEECC
Confidence            9999999883

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-13  Score=105.09  Aligned_cols=60  Identities=30%  Similarity=0.420  Sum_probs=55.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||++|.++   ++|++ +.|++||+|++|||+++.++||+||+++|+++.+.|+|+|.|..
T Consensus        25 ~~v~V~~v~~g---s~A~~-~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~V~R~~   84 (85)
T d1rgwa_          25 MPLTISRITPG---SKAAQ-SQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             SCCBEEEECTT---SHHHH-SSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             CCEEEEEecCC---ChHHh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            46999999999   88874 67999999999999999999999999999999999999999875

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.9e-13  Score=110.39  Aligned_cols=63  Identities=16%  Similarity=0.285  Sum_probs=59.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+|||++|.++   ++|+++|+|++||+|++|||+++.++||+||+++|+++.+.++|+|.|....
T Consensus        49 ~gi~I~~V~~g---s~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~~~~  111 (117)
T d1ujda_          49 IGAYIAKILPG---GSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             EEEEEEEECTT---CHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCCC
T ss_pred             cCEEEEEECCC---CHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            37999999999   9999999999999999999999999999999999999999999999998654

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=1.6e-13  Score=107.31  Aligned_cols=79  Identities=10%  Similarity=-0.021  Sum_probs=67.7

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||+|.||.+.+.....+++|||++|.|||         ||+..++|++||+ +.||++++.+++  .++++||.+
T Consensus        13 ~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs---------~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   83 (94)
T d1ihja_          13 GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDS---------PAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   83 (94)
T ss_dssp             TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTS---------HHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CCCCcCEEEeccccCCCCccCCCCEEEEEECCCC---------HHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3668999999999988766678899999999976         4555556799999 689999999996  567788989


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      ++.++|+|+|+
T Consensus        84 ~~~v~L~V~R~   94 (94)
T d1ihja_          84 DFKIELEIQTF   94 (94)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCEEEEEEEeC
Confidence            99999999984

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.9e-13  Score=107.13  Aligned_cols=80  Identities=15%  Similarity=0.049  Sum_probs=67.3

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||+|+||.........+.+|||++|.|||+         |+..++|++||+ +.||++++.+++  .++++||.++
T Consensus        12 ~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~---------A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~   82 (94)
T d1wf8a1          12 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGA---------AQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK   82 (94)
T ss_dssp             TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCH---------HHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC
T ss_pred             CCCcCEEEEeccCCCCCCcCCCCEEEEEECCCCh---------HHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4689999999887766555788999999999765         455556799999 689999999996  6678899999


Q ss_pred             CceEEEEEEeec
Q psy9829         164 NCISAQIKRTHF  175 (333)
Q Consensus       164 ~~v~L~v~R~~~  175 (333)
                      +.++|+|+|++|
T Consensus        83 ~~v~L~V~R~kP   94 (94)
T d1wf8a1          83 GNVRFVIGREKP   94 (94)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CeEEEEEEeCCC
Confidence            999999999764

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=5.7e-13  Score=105.34  Aligned_cols=58  Identities=17%  Similarity=0.347  Sum_probs=56.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .+|||++|.|+   ++|+++|.|++||+|++|||+++.+++|+||+.+|+.+.+.++|+|.
T Consensus        38 ~gi~I~~v~~g---g~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~   95 (98)
T d1rzxa_          38 PGIFISRLVPG---GLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK   95 (98)
T ss_dssp             EEEEEEEECTT---CHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTCTEEEEEEE
T ss_pred             CCEEEEEECCC---ChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            57999999999   99999999999999999999999999999999999999999999985

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=3.1e-13  Score=106.17  Aligned_cols=63  Identities=29%  Similarity=0.424  Sum_probs=57.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .++||++|.|+   ++|++ ++|++||+|++|||+++.+++|+||+++|+.+.+.|+|+|.|...+.
T Consensus        30 ~~i~V~~v~~g---s~A~~-~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~ps   92 (94)
T d1vb7a_          30 TPIIVTKVTER---GKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGPS   92 (94)
T ss_dssp             EEEECCCBCTT---SSHHH-HTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCCC
T ss_pred             CCEEEEeccCC---Chhhh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCc
Confidence            46999999999   88876 56999999999999999999999999999999999999999976543

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=3.4e-13  Score=111.64  Aligned_cols=64  Identities=27%  Similarity=0.320  Sum_probs=59.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-------CCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-------KEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-------~~~v~L~V~R~~~~~  286 (333)
                      .++||++|.|+   ++|+++|+|++||+|++|||+++.+++|+||+++|+++       ...|+|+|.|...+.
T Consensus        55 ~~i~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~~ps  125 (127)
T d1wg6a_          55 LGIFIKSIIHG---GAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPS  125 (127)
T ss_dssp             EEEEEEECCSS---SSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSCSS
T ss_pred             CCEEEEEECCC---CchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeCCCCC
Confidence            47999999999   99999999999999999999999999999999999987       568999999976543

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=5.6e-13  Score=106.40  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=56.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||+.|.++   ++|+ +++|++||+|++|||+++.+|||+||+++|+.+.+.|.|+|.|....
T Consensus        29 ~~v~V~~v~~g---~~a~-~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~~~   90 (103)
T d1wf7a_          29 MPLTISSLKDG---GKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA   90 (103)
T ss_dssp             EEEEECCCCTT---CHHH-HTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCC
T ss_pred             CCEEEEecCCC---ChHH-HCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            46999999998   7776 57899999999999999999999999999999999999999997643

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.8e-13  Score=107.77  Aligned_cols=63  Identities=17%  Similarity=0.241  Sum_probs=57.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||++|.++   ++|+++|+|++||+|++|||+++.++||+||+++|+.+.+.+.+++.|....
T Consensus        35 ~~i~V~~v~~g---s~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~r~~~   97 (107)
T d1x6da1          35 KVITVHRVFPN---GLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT   97 (107)
T ss_dssp             SSCEEEEECSS---SHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred             CCEEEEEECCC---CHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEECCCC
Confidence            47999999999   9999999999999999999999999999999999999998887776654433

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=107.61  Aligned_cols=63  Identities=25%  Similarity=0.324  Sum_probs=58.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~~  285 (333)
                      .++||++|.++   ++|+++|+|++||+|++|||+++.++||+||+++|+++.  ..|.|+|.|....
T Consensus        44 ~~i~I~~v~~g---g~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          44 EFLQVKSVIPD---GPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             CCCEEEEECTT---SHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCCC
T ss_pred             CCEEEEEECCC---CHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcCCCC
Confidence            46999999999   999999999999999999999999999999999999985  6899999996443

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=4.8e-13  Score=106.68  Aligned_cols=61  Identities=15%  Similarity=0.244  Sum_probs=58.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||++|.++   ++|+++|.|++||+|++|||+++.++||+||+++|+.+.+.++|+|.|..
T Consensus        33 ~gv~V~~v~~g---s~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~L~v~~~~   93 (102)
T d1tp5a1          33 EGIFISFILAG---GPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP   93 (102)
T ss_dssp             CCEEEEEECTT---SHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred             CCEEEEEecCC---chHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            47999999999   99999999999999999999999999999999999999999999998753

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=6.7e-13  Score=104.58  Aligned_cols=59  Identities=25%  Similarity=0.403  Sum_probs=54.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK----EKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~----~~v~L~V~R  281 (333)
                      .+|||++|.|+   |+|+++|+|++||+|++|||+++.++||+||+++|+.++    ..+.|.+.|
T Consensus        34 ~~i~V~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          34 PLVYIHEVIPG---GDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             SSEEEEEECTT---SHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             CCEEEEEEeCC---CccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            47999999999   999999999999999999999999999999999999975    458887765

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=9.9e-13  Score=106.96  Aligned_cols=62  Identities=26%  Similarity=0.312  Sum_probs=58.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||++|.|+   ++|+++|+|++||+|++|||+++.+++|+||+++|+++.+.++|+|.|...
T Consensus        42 ~gi~V~~I~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~l~v~~~~~  103 (117)
T d1v62a_          42 SVITIDRIKPA---SVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQ  103 (117)
T ss_dssp             CEEEEEECCTT---SHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTT
T ss_pred             CCEEEEEECCC---CHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcEEEEEEECCC
Confidence            47999999999   999999999999999999999999999999999999999999999987654

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=8.2e-13  Score=108.02  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=58.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc----CCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS----KEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s----~~~v~L~V~R~~~~~  286 (333)
                      ++|||++|.|+   ++|+++|+|++||+|++|||+++.++||+||+++|+.+    .+.|+|+|.|..+++
T Consensus        43 ~~v~I~~v~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~pp~~  110 (118)
T d1v6ba_          43 GKVVVSAVYEG---GAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKE  110 (118)
T ss_dssp             CSEEEEECCTT---SHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSCC
T ss_pred             CCEEEEEECCC---ChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeCCCCc
Confidence            36999999999   99999999999999999999999999999999999976    667999999986654

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.6e-13  Score=104.19  Aligned_cols=59  Identities=24%  Similarity=0.404  Sum_probs=56.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+|||++|.++   |+|+++| |++||+|++|||+++.+++|.||..+|+++.+.++|+|.|+
T Consensus        39 ~~i~V~~V~~g---g~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          39 EGIFISRVSEE---GPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE   97 (97)
T ss_dssp             CSEEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEEC
T ss_pred             CCEEEEEECCC---ChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCCCCEEEEEEEEC
Confidence            47999999999   9999998 99999999999999999999999999999999999999985

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.9e-13  Score=102.83  Aligned_cols=58  Identities=24%  Similarity=0.453  Sum_probs=55.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .++||++|.++   ++|+++|.|++||+|++|||+++.+++|+||+++|+++.+.++|+|.
T Consensus        30 ~~i~I~~v~~~---g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~L~Vl   87 (88)
T d2fnea1          30 LPIYVKTVFAK---GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL   87 (88)
T ss_dssp             EEEEEEEECTT---SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             cCEEEEEEcCC---ChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            36999999999   99999999999999999999999999999999999999999999873

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=9.7e-13  Score=105.40  Aligned_cols=79  Identities=14%  Similarity=0.108  Sum_probs=65.4

Q ss_pred             cceeeEEEecccCCCC--CCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          87 GSTFVGSVLGARGALD--LANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~--~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+|||+|.||++...  ....+.+|||++|.|||+         |+..++|++||+ +.||++++.+++  .++++||.
T Consensus        18 ~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~---------A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~   88 (107)
T d1uhpa_          18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGP---------AAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT   88 (107)
T ss_dssp             SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSH---------HHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCccCEEEEecccCCCcccccCCCCEEEEEECCCCH---------HHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHh
Confidence            4589999999988752  224688999999999765         455556799999 689999999997  77888899


Q ss_pred             cCCceEEEEEEee
Q psy9829         162 AHNCISAQIKRTH  174 (333)
Q Consensus       162 ~g~~v~L~v~R~~  174 (333)
                      +++.+.|.|.|+.
T Consensus        89 ~~~~v~l~v~r~~  101 (107)
T d1uhpa_          89 AKEPIVVQVLRRT  101 (107)
T ss_dssp             CCSSEEEEEEECC
T ss_pred             CCCcEEEEEEECC
Confidence            9999999998854

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.1e-13  Score=107.21  Aligned_cols=62  Identities=21%  Similarity=0.385  Sum_probs=59.1

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      ++||++|.++   ++|+++|.|++||+|++|||+++.+++|+||+++|+.+...|+|+|.|....
T Consensus        37 ~i~I~~v~~g---g~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~l~v~R~~~s   98 (103)
T d1wfva_          37 DLYVLRLAED---GPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS   98 (103)
T ss_dssp             EEECCCBCTT---SHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTCS
T ss_pred             CEEEEEEcCC---ChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            6999999999   9999999999999999999999999999999999999999999999997653

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=9.7e-13  Score=104.98  Aligned_cols=62  Identities=19%  Similarity=0.329  Sum_probs=55.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP  286 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~  286 (333)
                      .+|||++|.++   ++|+++| |++||+||+|||+++.+++|+||+++|+.+. .++|+|.|...+.
T Consensus        41 ~gi~V~~V~~~---s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~v~l~V~~~~~Ps  102 (104)
T d1wi2a_          41 LGIFISKVIPD---SDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMRVRFFSGPS  102 (104)
T ss_dssp             CCCEEEEECTT---SHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS-SEEEEEECCCCSC
T ss_pred             CCEEEEEECCC---ChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC-eEEEEEEECCCCC
Confidence            46999999999   9999998 9999999999999999999999999999885 6999997765443

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.4e-13  Score=104.15  Aligned_cols=75  Identities=13%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||+|.||.+.+.   ++.+|||++|.|||+         |+..++|++||+ +.||++++.+++  .++++|+.++
T Consensus        13 ~~glG~~i~g~~~~~~---~~~gi~V~~v~~gg~---------A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~   80 (92)
T d1t2ma1          13 QNGMGLSIVAAKGAGQ---DKLGIYVKSVVKGGA---------ADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS   80 (92)
T ss_dssp             SSSCCEEEEEECCSSC---CSCEEEEEEECTTSH---------HHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CCccCEEEEeecCCCC---CCCCEEEEEEcCCCh---------HHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCC
Confidence            5689999999999876   478999999999765         455556799999 689999999997  6788889999


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      +.++|+|+|+
T Consensus        81 ~~v~L~v~R~   90 (92)
T d1t2ma1          81 SVVTLEVAKQ   90 (92)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEeC
Confidence            9999999985

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.3e-13  Score=102.38  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=55.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .++||++|.++   |+|+++|+|++||+|++|||+++.+++|+||.++|+++.+.|+|+|.
T Consensus        25 ~~~~I~~v~~g---g~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i~   82 (88)
T d1kwaa_          25 NHCIVARIMHG---GMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV   82 (88)
T ss_dssp             GGEEEEEECTT---SHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCEEEEEECCC---CHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            36999999999   99999999999999999999999999999999999999999999985

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.9e-12  Score=105.79  Aligned_cols=78  Identities=17%  Similarity=0.306  Sum_probs=64.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||+|.||.|.++   ++.+|||++|.|||+         |+..++|++||+ |.||++++.+++  .++++||.++
T Consensus        39 ~~glG~~i~gg~~~~~---~~~~i~V~~v~~gg~---------A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~  106 (130)
T d1i16a_          39 SAGLGFSLEGGKGSLH---GDKPLTINRIFKGAA---------SEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP  106 (130)
T ss_dssp             SSSTTEEEECCCCCSS---SCCCCEEEEECSSCC---------CSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred             CCccCEEEeeccCCCC---CCCCEEEEEECCCCh---------HHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCC
Confidence            4589999999999888   578999999999765         555566799999 589999999996  6778888865


Q ss_pred             C-ceEEEEEEeecc
Q psy9829         164 N-CISAQIKRTHFN  176 (333)
Q Consensus       164 ~-~v~L~v~R~~~~  176 (333)
                      + .|+|+|+|+...
T Consensus       107 ~~~v~l~v~r~~~~  120 (130)
T d1i16a_         107 DGPVTIVIRRKSLQ  120 (130)
T ss_dssp             SSEEEEEEEEESSC
T ss_pred             CCeEEEEEEcCCCC
Confidence            4 799999986543

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.2e-12  Score=104.29  Aligned_cols=61  Identities=16%  Similarity=0.239  Sum_probs=55.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+|||++|.++   ++|.  +.|++||+|++|||+++.++||+||+++|+++.+.+.|+|.|....
T Consensus        39 ~~i~V~~v~~g---s~A~--~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~l~V~R~~~~   99 (104)
T d2csja1          39 TSIVISDVLPG---GPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV   99 (104)
T ss_dssp             CBCEEEEECTT---SSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEEC
T ss_pred             CCEEEEEECCC---Chhh--cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCCC
Confidence            57999999999   7774  6799999999999999999999999999999999999999997443

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.3e-12  Score=103.05  Aligned_cols=61  Identities=23%  Similarity=0.281  Sum_probs=54.3

Q ss_pred             CeEEEEEEccCcccCcccc-CCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC----ceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAG-THQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE----KLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~-dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~----~v~L~V~R~~  283 (333)
                      .++||++|.++   ++|++ +|+|++||+||+|||+++.++||+||+++|+++.+    .|.|+|.|..
T Consensus        34 ~~i~V~~v~~g---~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~~   99 (106)
T d2cs5a1          34 MPVIVSRVAPG---TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA   99 (106)
T ss_dssp             EEEEEEEECSS---STTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             CCEEEEEEcCC---CcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCCC
Confidence            46999999999   99988 89999999999999999999999999999998653    5788886654

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=6.2e-13  Score=117.08  Aligned_cols=94  Identities=24%  Similarity=0.379  Sum_probs=79.9

Q ss_pred             CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCcc-hhhHHHHHh
Q psy9829           2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKY-HTNLARQRS   80 (333)
Q Consensus         2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~Es-~~ki~~rae   80 (333)
                      +|-..+.+.+++|++++|+.++++|++||||++++++++|+...+.|++|||+|||.+.+++++++.+++ ..+..+++.
T Consensus        74 iE~~~~~g~~YGt~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~~i~IfI~pps~e~l~~l~kr~~~~~i~~r~~~~~  153 (199)
T d1kjwa2          74 IEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRAT  153 (199)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred             eeeeeecCCccceeeeEEEehhcCCCcccccccchHHhhhhhhccceeEEeeccccHHHHHhhhccccHHHHHHHHHHHH
Confidence            4556677889999999999999999999999999999999999999999999999999999999998874 355556666


Q ss_pred             hccccccceeeEEEe
Q psy9829          81 RVLFPVGSTFVGSVL   95 (333)
Q Consensus        81 r~~qE~G~~~g~~i~   95 (333)
                      +.++++..-|...|.
T Consensus       154 ~~e~~~~~~fd~vI~  168 (199)
T d1kjwa2         154 KLEQEFTECFSAIVE  168 (199)
T ss_dssp             HHHHHHGGGCSEEEC
T ss_pred             HHHHHhhccCCEEEE
Confidence            666776666776664

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.7e-12  Score=103.71  Aligned_cols=62  Identities=27%  Similarity=0.450  Sum_probs=57.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .++||++|.++   ++|+ ++.|++||+|++|||+++.+++|+||+++|+.+.+.|.|+|.|....
T Consensus        29 ~~i~V~~v~~g---~~A~-~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~~~   90 (103)
T d1v5la_          29 QPLVITRITPG---SKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR   90 (103)
T ss_dssp             EEEECSCBCTT---STTG-GGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTT
T ss_pred             CCEEEEEccCC---ChHH-hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCcc
Confidence            46999999999   8876 67899999999999999999999999999999999999999997644

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.7e-12  Score=102.12  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||+|.||++..++..++.+|||+.|.|||.         |+..+ |++||+ +.||++++.+++  .++.+|+.++
T Consensus        18 ~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~---------A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~   87 (97)
T d1x5qa1          18 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGP---------AARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAG   87 (97)
T ss_dssp             SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSH---------HHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CCeeCEEEEeccCCCCccCCCCCEEEEEECCCCh---------hHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            4589999999999988777899999999999764         45443 799999 699999999996  6677888899


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      +.++|.|+|
T Consensus        88 ~~v~l~v~R   96 (97)
T d1x5qa1          88 TAVQMRVWR   96 (97)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            999999998

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.8e-12  Score=100.11  Aligned_cols=60  Identities=13%  Similarity=0.196  Sum_probs=56.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||++|.|+   ++|++.| |++||+|++|||+++.++||+||.++|+++.++++|+|.|..
T Consensus        27 ~~~~V~~V~~g---~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~v~~~~   86 (91)
T d1g9oa_          27 LGQYIRLVEPG---SPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE   86 (91)
T ss_dssp             SSEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred             CCEEEEEEcCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEECCC
Confidence            46999999999   9998887 999999999999999999999999999999999999997754

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.3e-12  Score=107.31  Aligned_cols=60  Identities=22%  Similarity=0.313  Sum_probs=54.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .++||++|.|+   ++|+++|+|++||+|++|||+++.+++|+||+++|+.+...+.|+|.+.
T Consensus        45 ~~i~V~~I~~g---g~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~~  104 (122)
T d1v5qa_          45 SPPLISYIEAD---SPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIE  104 (122)
T ss_dssp             SCCEEEEECTT---SHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCeEEEEECCC---CHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEEEe
Confidence            46999999999   9999999999999999999999999999999999999987765555443

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-12  Score=106.35  Aligned_cols=78  Identities=5%  Similarity=-0.044  Sum_probs=66.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.||||.|.||.+.|.. +++.+|||++|.|||.         |+..++|++||+ +.||++++.+++  .++++|+.++
T Consensus        29 g~glG~~i~gg~~~~~~-~~~~gi~I~~V~~gs~---------A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~   98 (117)
T d1ujda_          29 GNGLGIRIVGGKEIPGH-SGEIGAYIAKILPGGS---------AEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS   98 (117)
T ss_dssp             CCSCSEEEEEEEECSSS-SSCEEEEEEEECTTCH---------HHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCS
T ss_pred             CcccCEEEeccccCCCC-CCCcCEEEEEECCCCH---------HHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC
Confidence            67999999999999876 4789999999999764         555556799999 689999999996  6677888888


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      +.++|+|+|..
T Consensus        99 ~~v~l~v~r~~  109 (117)
T d1ujda_          99 GEAEICVRLDL  109 (117)
T ss_dssp             SCEEEEEESSC
T ss_pred             CeEEEEEEECC
Confidence            89999998844

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=2.8e-12  Score=102.72  Aligned_cols=60  Identities=13%  Similarity=0.313  Sum_probs=55.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+|||++|.++   |+|+++|+|++||+|++|||+++.++||+||+++|+.+...+.|++.+.
T Consensus        26 ~~i~I~~v~~g---gpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l~~~   85 (112)
T d1qaua_          26 PPVIISDLIRG---GAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR   85 (112)
T ss_dssp             SCEEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEE
T ss_pred             CCEEEEEEcCC---CHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEEEEe
Confidence            46999999999   9999999999999999999999999999999999999988777766544

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.9e-12  Score=104.23  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=58.8

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY  289 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~~~  289 (333)
                      .+|||++|.++   ++|+++ .|++||+||+|||+++.+++|+||+++|+.+.+.|+|+|.|........
T Consensus        42 ~gi~V~~V~~g---s~A~~~-gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~~p~~~~~~  107 (117)
T d1uita_          42 GGIYVSKVTVG---SIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLS  107 (117)
T ss_dssp             SCEEEEEECTT---SHHHHH-TCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCCCCCC
T ss_pred             CCEEEEEEecC---ChHHhC-CCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEEEECCcceeee
Confidence            47999999999   888765 5999999999999999999999999999999999999998876554433

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.5e-12  Score=97.42  Aligned_cols=59  Identities=20%  Similarity=0.279  Sum_probs=56.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .++||+.|.++   ++|++.| |++||+|++|||+++.+++|.|+..+|+.+.+.++|+|.|-
T Consensus        18 ~~~~V~~V~~g---spA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1          18 SPVRVQAVDSG---GPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             SSCEEEEECTT---SHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            57999999999   9999888 99999999999999999999999999999999999999885

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3e-12  Score=101.61  Aligned_cols=58  Identities=22%  Similarity=0.386  Sum_probs=55.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .++||++|.++   ++|+++|+|++||+|++|||+++.+|+|+||.++|+++.+.|+|+|.
T Consensus        41 ~~i~I~~V~~g---s~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~v~   98 (100)
T d1va8a1          41 DSVIISRIVKG---GAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI   98 (100)
T ss_dssp             SSEEEEEECTT---SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCEEEEEECCC---ChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEEEE
Confidence            47999999999   99999999999999999999999999999999999999999999873

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.9e-12  Score=103.29  Aligned_cols=63  Identities=17%  Similarity=0.301  Sum_probs=56.4

Q ss_pred             eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-----CCceEEEEeccCCCC
Q psy9829         221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-----KEKLSLTIRREVPRP  286 (333)
Q Consensus       221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-----~~~v~L~V~R~~~~~  286 (333)
                      .+||++|.|+   ++|+++|+|++||+||+|||+++.++||+||+++|+.+     .+.+.|.|.+....|
T Consensus        33 ~~~I~~i~~g---g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~~~~sgP  100 (103)
T d1ufxa_          33 LPRIVTIQRG---GSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGP  100 (103)
T ss_dssp             SCEEEEECTT---SHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCCCT
T ss_pred             CEEEEEEcCC---cchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEeCCCCCC
Confidence            5899999999   99999999999999999999999999999999999986     467888887654433

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=7.9e-12  Score=103.22  Aligned_cols=62  Identities=21%  Similarity=0.320  Sum_probs=58.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~  284 (333)
                      .++||.+|.|+   ++|+++|+|++||+|++|||+++.+++|+||+++|+.+.  ..|+|+|.|...
T Consensus        49 ~~i~V~~v~~g---g~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~~  112 (126)
T d1wifa_          49 PYLQISHLINK---GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFL  112 (126)
T ss_dssp             TEEEECCCCTT---SSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSSS
T ss_pred             CcEEEEEECCC---ChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCCC
Confidence            46999999999   999999999999999999999999999999999999875  699999999753

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.9e-12  Score=97.53  Aligned_cols=63  Identities=17%  Similarity=0.295  Sum_probs=57.1

Q ss_pred             cccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       213 d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .||+.+..+ +|++|.++   ++|++.| |++||+|++|||+++.++||+||+++|+++.+.++|+|.
T Consensus        17 ~~Gf~i~~g-~V~~v~~g---~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~v~   79 (82)
T d1r6ja_          17 HVGFIFKNG-KITSIVKD---SSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM   79 (82)
T ss_dssp             CCCEEEETT-EEEEECTT---SHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             CcCEEEEEE-EEEEECCC---ChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEEEE
Confidence            466666544 69999999   9999998 999999999999999999999999999999999999985

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4e-12  Score=98.13  Aligned_cols=56  Identities=16%  Similarity=0.360  Sum_probs=51.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEE
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT  278 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~  278 (333)
                      .++||++|.|+   ++|+++|+|++||+|++|||+++.++||+||.++|++++..++++
T Consensus        26 ~~i~I~~v~~g---g~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~   81 (85)
T d1x45a1          26 PTVIIANMMHG---GPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVK   81 (85)
T ss_dssp             CCCEEEEECTT---CHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEEeCCC---CHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEE
Confidence            46999999999   999999999999999999999999999999999999987654443

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.6e-12  Score=97.03  Aligned_cols=62  Identities=8%  Similarity=0.217  Sum_probs=55.0

Q ss_pred             cccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829         213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI  279 (333)
Q Consensus       213 d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V  279 (333)
                      .||+.+..+ ||.+|.|+   ++|++ ++|++||+|++|||+++.+|+|+||.++|+.+.+.++|+|
T Consensus        14 ~lGf~i~~g-~V~~V~~g---s~A~~-~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~v   75 (79)
T d1y7na1          14 QLGFSVQNG-IICSLMRG---GIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT   75 (79)
T ss_dssp             CCCEEEETT-EEEEECTT---SHHHH-HTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEE
T ss_pred             CcCEEEECC-EEEEEcCC---CHHHH-CCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEE
Confidence            455555434 79999999   98887 5799999999999999999999999999999999999987

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=6.5e-12  Score=99.54  Aligned_cols=60  Identities=13%  Similarity=0.222  Sum_probs=56.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~  283 (333)
                      .++||.+|.|+   ++|++.| |++||+|++|||+++.+++|+||+++|+++...|+|+|.+..
T Consensus        43 ~~~~I~~v~~g---~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~v~L~V~~~~  102 (104)
T d1q3oa_          43 ALQYLESVDEG---GVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT  102 (104)
T ss_dssp             SSEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence            46999999999   9999887 999999999999999999999999999999999999998754

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.8e-12  Score=104.39  Aligned_cols=82  Identities=13%  Similarity=0.038  Sum_probs=66.8

Q ss_pred             cccceeeEEEecccCCCCC---CCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDL---ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQV  158 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~---~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~a  158 (333)
                      ..+.+|||+|.||.+.+..   ...+.+|||++|.|||+         |+..++|++||+ +.||+++|.+++  .++++
T Consensus        18 ~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~---------A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   88 (111)
T d1ujua_          18 APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGA---------AGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             CTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSH---------HHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             CCCCccCEEEeccccCCcccccccCCCCEEEEEECCCCh---------HHHcCCCccceeeeeeCCcccCCCCHHHHHHH
Confidence            3467999999999987542   23678999999999765         455556799999 689999999996  67888


Q ss_pred             hhhcCCceEEEEEEeec
Q psy9829         159 FRIAHNCISAQIKRTHF  175 (333)
Q Consensus       159 lr~~g~~v~L~v~R~~~  175 (333)
                      ||.+++.++|+|.|...
T Consensus        89 lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          89 LRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HSSCSSEEEECCCCCCC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            89899999999988553

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.5e-12  Score=99.39  Aligned_cols=80  Identities=14%  Similarity=0.045  Sum_probs=59.3

Q ss_pred             cccceeeEEEecccCCCC---CCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhh
Q psy9829          85 PVGSTFVGSVLGARGALD---LANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQV  158 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~---~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~a  158 (333)
                      +.+.+|||+|.||.+...   -....++|||++|.|||+         |+..++|++||+ +.||++++.+++  .++++
T Consensus        10 ~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~---------A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1          10 EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSP---------AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             CC-CCCCEEEECCCC-------------EEEEEECSSSH---------HHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCH---------HHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            346799999999987642   122457999999999765         555556799999 689999999996  67788


Q ss_pred             hhhcCCceEEEEEEe
Q psy9829         159 FRIAHNCISAQIKRT  173 (333)
Q Consensus       159 lr~~g~~v~L~v~R~  173 (333)
                      ||.+++.++|+|+|.
T Consensus        81 lk~~~~~v~L~V~r~   95 (96)
T d2fcfa1          81 IRKAGNPVVFMVQSI   95 (96)
T ss_dssp             HHTCCSSEEEEEECC
T ss_pred             HHcCCCeEEEEEEEc
Confidence            898999999999873

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.7e-11  Score=101.33  Aligned_cols=61  Identities=26%  Similarity=0.361  Sum_probs=54.9

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~  285 (333)
                      .+|||++|.++   ++|+++| |++||+||+|||+++.+++|+||+++|+.+. .+.|+|.|....
T Consensus        46 ~gv~V~~V~~g---~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~-~v~l~v~~~~~~  106 (128)
T d1uf1a_          46 LGIYITGVDPG---SEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR-HLILTVKDVGRL  106 (128)
T ss_dssp             CCCEEEEECTT---CHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS-EEEEEEECCSCC
T ss_pred             CCEEEEEECCC---ChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC-cEEEEEEECCcC
Confidence            47999999999   9999887 9999999999999999999999999999875 789999776543

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.2e-12  Score=102.07  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=52.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR  280 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~  280 (333)
                      .++||++|.++   ++|+++|+|++||+|++|||+++.++||+||+++|+++...+.|++.
T Consensus        38 ~~~~V~~i~~~---s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~   95 (99)
T d1x5ra1          38 SPPLVCFIEPD---SPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLE   95 (99)
T ss_dssp             SCCEEEEECTT---SHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEEECCC---ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEE
Confidence            46999999999   99999999999999999999999999999999999988776555543

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=7.5e-12  Score=100.99  Aligned_cols=67  Identities=19%  Similarity=0.272  Sum_probs=58.0

Q ss_pred             ccccc--cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC-CceEEEEeccCC
Q psy9829         214 FGIIL--GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTIRREVP  284 (333)
Q Consensus       214 ~G~~l--~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~-~~v~L~V~R~~~  284 (333)
                      |||.|  +.++||++|.++   ++|++.| |++||+|++|||+++.+++|+|++++|+++. +.|+|+|.+...
T Consensus        28 ~Gf~i~g~~~v~V~~V~~~---spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~~~~   97 (111)
T d1vaea_          28 LGFTLRGNTPVQVHFLDPH---CSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLD   97 (111)
T ss_dssp             CSCCEESSSSCEECCCCTT---SSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEEC
T ss_pred             cCEEEECCccEEEEEEcCC---ChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEECCCC
Confidence            45544  357999999999   9999988 9999999999999999999999999999985 579998877543

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.1e-12  Score=99.91  Aligned_cols=77  Identities=12%  Similarity=0.045  Sum_probs=65.2

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||.|.||.+.+.   ++++|||++|.|||+         |+..++|++||+ +.||++++.+++  .+++.||.+
T Consensus        17 ~~~glG~~i~~~~~~~~---~~~~i~V~~v~~gg~---------A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~   84 (110)
T d1um1a_          17 GPSGLGMGLIDGMHTHL---GAPGLYIQTLLPGSP---------AAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG   84 (110)
T ss_dssp             CTTCCCEEEEETTTSTT---CCSSEEEEEECTTSH---------HHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC
T ss_pred             CCCCCCEEEEeecCCCC---CCCCEEEEEECCCCH---------HHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            35689999999998876   578999999999765         455556799999 689999999996  677888999


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      ++.++|+|+|..
T Consensus        85 ~~~v~l~v~r~~   96 (110)
T d1um1a_          85 GKKMRFLVAKSD   96 (110)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEeCC
Confidence            999999998854

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.18  E-value=8.2e-12  Score=97.45  Aligned_cols=74  Identities=16%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..+|||+|.||.+.+    +|.+|||++|.|||+|         +..++|++||+ +.||++++.|++  .+++.||.+ 
T Consensus        12 ~~~lGi~i~gg~~~~----~~~~i~I~~I~~gg~A---------~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~   78 (92)
T d2f0aa1          12 YNFLGISIVGQSNER----GDGGIYIGSIMKGGAV---------AADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIV   78 (92)
T ss_dssp             HCSCCEEEECCCCTT----SCCCEEEEEEBTTSHH---------HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHH
T ss_pred             CCccCEEEEccCCCC----CCCCEEEEEECCCCcH---------HHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            568999999999854    4789999999997754         54556799999 689999999996  566777764 


Q ss_pred             --CCceEEEEEEe
Q psy9829         163 --HNCISAQIKRT  173 (333)
Q Consensus       163 --g~~v~L~v~R~  173 (333)
                        ...++|+|.|.
T Consensus        79 ~~~~~v~L~V~R~   91 (92)
T d2f0aa1          79 HKPGPIVLTVAKL   91 (92)
T ss_dssp             HSSSCEEEEEECC
T ss_pred             CCCCcEEEEEEeC
Confidence              44589999883

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.2e-12  Score=99.97  Aligned_cols=77  Identities=13%  Similarity=0.040  Sum_probs=63.3

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      .+.+.+|||+|.||++.+.   ++.+|||++|.|||+         |+..++|++||+ +.||++++.+++  .++..|+
T Consensus        26 ~~~~~~lG~~i~gg~~~~~---~~~gi~V~~v~~gg~---------A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~   93 (108)
T d2cssa1          26 KDSGALLGLKVVGGKMTDL---GRLGAFITKVKKGSL---------ADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIIL   93 (108)
T ss_dssp             SSCSSCSSEEEEEEEECTT---SSEEEEEEEECTTSH---------HHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             cCCCCCcCEEEeccCCCCC---CCcCEEEEEECCCCc---------hhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3447799999999999887   589999999999775         454555799999 689999999996  5677777


Q ss_pred             hc--CCceEEEEEE
Q psy9829         161 IA--HNCISAQIKR  172 (333)
Q Consensus       161 ~~--g~~v~L~v~R  172 (333)
                      .+  +..++|+|+|
T Consensus        94 ~~~~~~~v~l~v~R  107 (108)
T d2cssa1          94 ESKSEPQVEIIVSR  107 (108)
T ss_dssp             HGGGCSCEEEEEEE
T ss_pred             hCCCCCEEEEEEeC
Confidence            64  4569999988

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=8.2e-12  Score=103.14  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||+|+||+|.+.  +.+.+|||++|.|||         ||+..++|++||+ +.||++++.+++  .+++.||.+ 
T Consensus        36 ~~glG~~i~gg~~~~~--~~~~~i~V~~v~~gg---------~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~  104 (127)
T d1wg6a_          36 SAGLGVSLKGNKSRET--GTDLGIFIKSIIHGG---------AAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSM  104 (127)
T ss_dssp             TTCCCCEEEEEEETTT--TEEEEEEEEECCSSS---------STHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHH
T ss_pred             CCcEeEEEEeecCCCC--CCcCCEEEEEECCCC---------chhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcc
Confidence            5689999999999987  357899999999976         5565666799999 689999999996  667777765 


Q ss_pred             ------CCceEEEEEEee
Q psy9829         163 ------HNCISAQIKRTH  174 (333)
Q Consensus       163 ------g~~v~L~v~R~~  174 (333)
                            ...|+|+|.|+.
T Consensus       105 ~~~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         105 SMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHHHTCEEEEEEEECS
T ss_pred             cccCCCCCEEEEEEeeCC
Confidence                  457999999854

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=2.3e-11  Score=95.58  Aligned_cols=78  Identities=10%  Similarity=0.029  Sum_probs=61.4

Q ss_pred             cceeeEEEecccCCC--CCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          87 GSTFVGSVLGARGAL--DLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        87 G~~~g~~i~gg~d~p--~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+|||+|.++.+..  .....+.+|||++|.|||.         |+..++|++||+ +.||+++|.+++  .++++||.
T Consensus        14 ~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~---------A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~   84 (99)
T d1ozia_          14 DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGA---------AESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN   84 (99)
T ss_dssp             SSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSH---------HHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCCcEEEEeeccCCCcccccCCCCEEEEEECCCCh---------HHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHC
Confidence            458999998665432  2222478999999999764         555556799999 689999999997  66788899


Q ss_pred             cCCceEEEEEEe
Q psy9829         162 AHNCISAQIKRT  173 (333)
Q Consensus       162 ~g~~v~L~v~R~  173 (333)
                      +++.++|+|+|.
T Consensus        85 ~~~~v~L~v~R~   96 (99)
T d1ozia_          85 TGQVVHLLLEKG   96 (99)
T ss_dssp             SCSEEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            999999999883

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.9e-11  Score=91.40  Aligned_cols=58  Identities=34%  Similarity=0.475  Sum_probs=53.2

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC-CceEEEEec
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTIRR  281 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~-~~v~L~V~R  281 (333)
                      .++||++|.++   ++|++.| |++||+|++|||+++.+++++|+.++|+++. ..+.|+|.+
T Consensus        25 ~g~~V~~v~~g---spA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          25 NGIFVQLVQAN---SPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             TEEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCEEEEEECCC---CHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            47999999999   9999887 9999999999999999999999999999875 579999854

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.8e-11  Score=94.21  Aligned_cols=52  Identities=25%  Similarity=0.394  Sum_probs=45.4

Q ss_pred             ccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCCCC
Q psy9829         235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRP  286 (333)
Q Consensus       235 ~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~~~  286 (333)
                      .++..+.|++||+|++|||++++++||+||+++|+++.  +.|+|+|.|...+.
T Consensus        41 ~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~~~Ps   94 (96)
T d1ujva_          41 DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGPS   94 (96)
T ss_dssp             CGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSSCS
T ss_pred             CcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCCCC
Confidence            34556789999999999999999999999999999974  68999999976554

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=5.7e-11  Score=93.50  Aligned_cols=76  Identities=8%  Similarity=0.075  Sum_probs=63.5

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+.+|||.+.||.+.++    +.+|||++|.|||+|         +..++|++||+ +.||++++.|++  .++++|+.
T Consensus        19 ~~~~~lG~~v~~~~~~~~----~~~i~V~~v~~gg~A---------~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~   85 (99)
T d1p1da2          19 KHSVELGITISSPSSRKP----GDPLVISDIKKGSVA---------HRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ   85 (99)
T ss_dssp             CSSCCCCCEEECSCSSST----TCCCEEEECCSSSHH---------HHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHH
T ss_pred             CCCCccCEEEEecCCCCC----CCCEEEEEEcCCchh---------hhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHc
Confidence            346689999999988765    357999999998755         54555799999 689999999996  77888999


Q ss_pred             cCCceEEEEEEe
Q psy9829         162 AHNCISAQIKRT  173 (333)
Q Consensus       162 ~g~~v~L~v~R~  173 (333)
                      +++.++|+|+|.
T Consensus        86 ~~~~v~L~V~r~   97 (99)
T d1p1da2          86 CEDLVKLKIRKD   97 (99)
T ss_dssp             CTTCEEEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            999999999873

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=3.6e-11  Score=93.46  Aligned_cols=73  Identities=12%  Similarity=0.029  Sum_probs=61.1

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||+|+||.+++      .+|||++|.|||+         |+..+.|++||+ +.||++++.+++  .++++|+.+
T Consensus        14 ~~~~lG~~i~gg~~~~------~~i~V~~V~~~~~---------A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~   78 (90)
T d1qava_          14 DAGGLGISIKGGRENK------MPILISKIFKGLA---------ADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT   78 (90)
T ss_dssp             TTTCCCEEEEEEGGGT------EEEEEEEECTTSH---------HHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CCCccCEEEEccccCC------CCEEEEEEcCCCc---------eeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3558999999998643      5799999999765         455556799999 689999999996  678888999


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..++|+|+|.
T Consensus        79 ~~~v~l~v~~~   89 (90)
T d1qava_          79 GKEVVLEVKYM   89 (90)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEEe
Confidence            99999999884

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.7e-10  Score=92.76  Aligned_cols=80  Identities=13%  Similarity=0.067  Sum_probs=65.8

Q ss_pred             ccceeeEEEecccCCCCCCC-CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          86 VGSTFVGSVLGARGALDLAN-YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~-~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      .+.+|||.|.||.+.++... .+.++||++|.|||         ||+....|++||+ +.||+++|.+.+  .++++||.
T Consensus        20 ~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg---------~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~   90 (114)
T d1uewa_          20 ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGS---------PADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD   90 (114)
T ss_dssp             TTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTC---------TTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH
T ss_pred             CCCCCCEEEeeecccCCCCccCcCCEEEEEECCCC---------HHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHc
Confidence            35689999999999986532 35679999999976         4555556799999 689999999996  77888898


Q ss_pred             cCCceEEEEEEee
Q psy9829         162 AHNCISAQIKRTH  174 (333)
Q Consensus       162 ~g~~v~L~v~R~~  174 (333)
                      ++..++|+|.|..
T Consensus        91 ~~~~v~l~V~r~~  103 (114)
T d1uewa_          91 AGLSVTLRIIPQE  103 (114)
T ss_dssp             TTTEEEEEECCCS
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999998854

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.2e-11  Score=94.91  Aligned_cols=60  Identities=25%  Similarity=0.316  Sum_probs=53.3

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .++||+.|.++   ++|+++| |++||+|++|||+++.+|+|+||+++|+.+++ +.|+|.|...
T Consensus        35 ~~i~V~~v~~g---g~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~-~~l~V~~~~~   94 (101)
T d1ueza_          35 VGIYVSLVEPG---SLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKK-LVLSVYSAGR   94 (101)
T ss_dssp             CCEEEEEECTT---SHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSSS-CCEEECCCCC
T ss_pred             CCEEEEEECCC---ChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCCC-EEEEEEECCC
Confidence            36999999999   9999888 99999999999999999999999999999865 6677766543

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.8e-11  Score=93.17  Aligned_cols=58  Identities=28%  Similarity=0.399  Sum_probs=51.4

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~  282 (333)
                      .+|||++|.++   ++|++.| |++||+|++|||+++.+|+|+||+++|+.+.. +.|+|.|.
T Consensus        34 ~gi~V~~V~~g---s~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~-~~l~v~~~   91 (101)
T d1x5na1          34 PGIFISHVKPG---SLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAA   91 (101)
T ss_dssp             CSEEEEEECTT---STTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCSS-EEEEECSS
T ss_pred             CCEEEEEECCC---ChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCCC-EEEEEEEC
Confidence            47999999999   8888765 99999999999999999999999999999865 77776553

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=8.5e-11  Score=96.28  Aligned_cols=79  Identities=11%  Similarity=0.000  Sum_probs=65.2

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.||||.|.||.+..+.  ...+|||++|.|||         ||+..++|++||+ |.||++++.+++  .++++||.+
T Consensus        25 ~~~glGf~i~gg~~~~~~--~~~~i~V~~I~~gg---------~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          25 PVTGFGIQLQGSVFATET--LSSPPLISYIEADS---------PAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             SSSSSCEEEECCSCCSSS--CSSCCEEEEECTTS---------HHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             CCCccCEEEecccCCCcc--CCCCeEEEEECCCC---------HHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            466999999999999873  57899999999976         4555556799999 689999999986  778899988


Q ss_pred             CCceEEEEEEeec
Q psy9829         163 HNCISAQIKRTHF  175 (333)
Q Consensus       163 g~~v~L~v~R~~~  175 (333)
                      +..++|+++|...
T Consensus        94 ~~~~~l~l~~~~~  106 (122)
T d1v5qa_          94 SITSKVTLEIEFD  106 (122)
T ss_dssp             TTTTCEEEEEEEE
T ss_pred             CCceEEEEEEecc
Confidence            8888777776543

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.9e-11  Score=91.57  Aligned_cols=73  Identities=10%  Similarity=0.099  Sum_probs=60.4

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      +.+.+|||+|.||.|.+      .++||++|.|||+|         + +.+|++||+ +.||++++.+++  .+++.++.
T Consensus         8 ~~~~~~Gf~i~gg~~~~------~~v~V~~v~~gs~A---------~-~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~   71 (85)
T d1rgwa_           8 TGPGPWGFRLQGGKDFN------MPLTISRITPGSKA---------A-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS   71 (85)
T ss_dssp             CCSSCCCEEECCCGGGT------SCCBEEEECTTSHH---------H-HSSCCCCSBEEEETTEECTTCCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEeecCCC------CCEEEEEecCCChH---------H-hCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45779999999998743      45999999998765         3 245799999 689999999996  56778888


Q ss_pred             cCCceEEEEEEe
Q psy9829         162 AHNCISAQIKRT  173 (333)
Q Consensus       162 ~g~~v~L~v~R~  173 (333)
                      +++.++|+|+|.
T Consensus        72 ~~~~v~L~V~R~   83 (85)
T d1rgwa_          72 ASYNLSLTLQKS   83 (85)
T ss_dssp             CSSCEEEEEESC
T ss_pred             CCCEEEEEEEEC
Confidence            999999999873

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6e-11  Score=94.64  Aligned_cols=75  Identities=16%  Similarity=0.136  Sum_probs=60.0

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||+|.||.+.+     +.+|||++|.|||+|         +..++|++||+ +.||+++|.+++  .+++.||.+
T Consensus        18 ~~~~lG~~i~gg~~~~-----~~~i~V~~v~~gs~A---------~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~   83 (107)
T d1x6da1          18 EGAGLGFSLAGGADLE-----NKVITVHRVFPNGLA---------SQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQA   83 (107)
T ss_dssp             TTSCCSEEEECCSSSS-----CSSCEEEEECSSSHH---------HHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHT
T ss_pred             CCCccCEEEeeccCCC-----CCCEEEEEECCCCHH---------HHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcC
Confidence            3678999999998853     468999999998754         44445799999 699999999996  667788888


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      ++.+.+++.|++
T Consensus        84 ~~~~~l~v~~r~   95 (107)
T d1x6da1          84 REPRQAVIVTRK   95 (107)
T ss_dssp             TSSSEEEEEEEC
T ss_pred             CCCEEEEEEECC
Confidence            887776666544

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.9e-11  Score=92.68  Aligned_cols=72  Identities=13%  Similarity=0.156  Sum_probs=61.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||+|.||.+.++   ++.+|||++|.+||.         |+....|++||+ +.||++++.+.+  .++++||.++
T Consensus        12 ~~~lG~~i~~g~~~~~---~~~~i~I~~v~~~g~---------A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~   79 (88)
T d2fnea1          12 PDGLGFSIVGGYGSPH---GDLPIYVKTVFAKGA---------ASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK   79 (88)
T ss_dssp             TTBTSEEEEEEEEETT---EEEEEEEEEECTTSH---------HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCccCEEEEeccCCCC---CCcCEEEEEEcCCCh---------HHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3589999999999888   478999999999764         555556799999 689999999996  6678889999


Q ss_pred             CceEEEE
Q psy9829         164 NCISAQI  170 (333)
Q Consensus       164 ~~v~L~v  170 (333)
                      +.++|+|
T Consensus        80 ~~v~L~V   86 (88)
T d2fnea1          80 GTVTLMV   86 (88)
T ss_dssp             SSEEEEE
T ss_pred             CcEEEEE
Confidence            9999886

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.9e-10  Score=93.04  Aligned_cols=61  Identities=26%  Similarity=0.397  Sum_probs=53.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~~~  285 (333)
                      .+|||++|.|+   ++|+++|+|++||+|++|||+++.+  +.+|..+|+.+ ...|.|+|.|....
T Consensus        48 ~gi~V~~v~~g---g~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~~~~v~l~v~r~~~~  109 (124)
T d1wh1a_          48 IGIYISEIDPN---SIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIARPELQ  109 (124)
T ss_dssp             CCEEEEEECSS---SHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEEECSSC
T ss_pred             CCEEEEEECCC---ChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCCCCcEEEEEEeCCCc
Confidence            57999999999   9999999999999999999999874  67788888875 56899999886544

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=9.4e-11  Score=91.98  Aligned_cols=73  Identities=15%  Similarity=0.130  Sum_probs=58.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||+|.||.|.++    +++|||++|.|||+|         +..++|++||+ +.||++++.+++  .++++||.+ 
T Consensus        17 ~~glG~~i~gg~~~~~----~~~i~V~~v~~gg~A---------~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   83 (96)
T d1wi4a1          17 ETGLGLKILGGINRNE----GPLVYIHEVIPGGDC---------YKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   83 (96)
T ss_dssp             SSCCCEEEEECSSSSS----CSSEEEEEECTTSHH---------HHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             CCccCEEEEeccCCCC----CCCEEEEEEeCCCcc---------ccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            4589999999998876    468999999997754         44455799999 689999999996  667788875 


Q ss_pred             ---CCceEEEEEE
Q psy9829         163 ---HNCISAQIKR  172 (333)
Q Consensus       163 ---g~~v~L~v~R  172 (333)
                         ...++|.+.|
T Consensus        84 ~~~~~~vel~~~R   96 (96)
T d1wi4a1          84 LRSESPWEIAFIR   96 (96)
T ss_dssp             CSSSSCEEEEEEC
T ss_pred             CCCCCeEEEEEEC
Confidence               3557777765

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=6.9e-11  Score=93.09  Aligned_cols=76  Identities=9%  Similarity=-0.025  Sum_probs=62.1

Q ss_pred             cceeeEEEecccCCCCCCC---CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          87 GSTFVGSVLGARGALDLAN---YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~---~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      ..+|||+|.||++.+...+   .+++|||++|.|||+         |+..+.|++||+ +.||++++.+++  .++++|+
T Consensus        14 ~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~---------A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~   84 (98)
T d1rzxa_          14 DKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGL---------AESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMV   84 (98)
T ss_dssp             SSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCH---------HHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCcccEEEecccCCCccccCccCCCCEEEEEECCCCh---------HHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHH
Confidence            4589999999998764332   357899999999765         454455799999 689999999997  6777888


Q ss_pred             hcCCceEEEEE
Q psy9829         161 IAHNCISAQIK  171 (333)
Q Consensus       161 ~~g~~v~L~v~  171 (333)
                      .+++.++|.|+
T Consensus        85 ~~~~~v~l~v~   95 (98)
T d1rzxa_          85 ANSSNLIITVK   95 (98)
T ss_dssp             HTCTEEEEEEE
T ss_pred             cCCCeEEEEEE
Confidence            89999999986

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.8e-10  Score=94.21  Aligned_cols=77  Identities=13%  Similarity=0.045  Sum_probs=62.2

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh-cCC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI-AHN  164 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~-~g~  164 (333)
                      ..+|||.|.|+.|.+.    +.+|||++|.|||+         |+...+|++||+ +.||++++.+.+.++.+|+. .+.
T Consensus        31 ~~~lG~~i~~~~~~~~----~~gi~V~~v~~gg~---------A~~~g~L~~GD~Il~INg~~v~~~~~~~~~l~~~~~~   97 (124)
T d1wh1a_          31 QDKLGLTVCYRTDDED----DIGIYISEIDPNSI---------AAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENK   97 (124)
T ss_dssp             TCCCCEEEECCCCCSS----CCCEEEEEECSSSH---------HHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSCC
T ss_pred             CCcccEEEEecCCCCC----CCCEEEEEECCCCh---------hhhhcccCCCCEEEEECCEECCCHHHHHHHHhhCCCC
Confidence            4689999999998763    68999999999765         555556799999 68999999998877777776 466


Q ss_pred             ceEEEEEEeecc
Q psy9829         165 CISAQIKRTHFN  176 (333)
Q Consensus       165 ~v~L~v~R~~~~  176 (333)
                      .|.|+|.|+...
T Consensus        98 ~v~l~v~r~~~~  109 (124)
T d1wh1a_          98 NFSLLIARPELQ  109 (124)
T ss_dssp             SCCEEEEECSSC
T ss_pred             cEEEEEEeCCCc
Confidence            799999885543

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.2e-10  Score=92.63  Aligned_cols=78  Identities=13%  Similarity=0.127  Sum_probs=63.9

Q ss_pred             cccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhh
Q psy9829          83 LFPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVF  159 (333)
Q Consensus        83 ~qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~al  159 (333)
                      ....+.+|||.|.||.|.      +.+|||++|.||++|         + +.+|++||+ +.||+++|.+++  .++++|
T Consensus        10 ~~~g~~~~Gf~l~gg~d~------~~~i~V~~v~~g~~A---------~-~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll   73 (103)
T d1v5la_          10 VLPGPAPWGFRLSGGIDF------NQPLVITRITPGSKA---------A-AANLCPGDVILAIDGFGTESMTHADAQDRI   73 (103)
T ss_dssp             EEESSSCCSBCCEEETTT------TEEEECSCBCTTSTT---------G-GGTCCTTCBEEEETTEECSSCCHHHHHHHH
T ss_pred             EEECCCCCCEEEEeecCC------CCCEEEEEccCCChH---------H-hCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            445678999999999873      467999999998754         3 345799999 689999999997  667888


Q ss_pred             hhcCCceEEEEEEeecc
Q psy9829         160 RIAHNCISAQIKRTHFN  176 (333)
Q Consensus       160 r~~g~~v~L~v~R~~~~  176 (333)
                      +.++..++|+|+|....
T Consensus        74 ~~~~~~v~l~V~R~~~~   90 (103)
T d1v5la_          74 KAASYQLCLKIDRAETR   90 (103)
T ss_dssp             TTCCSEEECEECCCTTT
T ss_pred             HcCCCEEEEEEEECCcc
Confidence            88999999999985543

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.4e-10  Score=89.06  Aligned_cols=75  Identities=13%  Similarity=0.085  Sum_probs=59.4

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...||||.|.||.+.      +..|||++|.|||         ||+..++|++||+ +.||+++|.+++  .++++||.+
T Consensus        18 ~~~glG~~i~gg~~~------~~~i~V~~v~~g~---------~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~   82 (103)
T d1uepa_          18 MESGFGFRILGGDEP------GQPILIGAVIAMG---------SADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA   82 (103)
T ss_dssp             SSSSCCEEECCCCST------TSCCBEEEECTTS---------TTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred             CCceEeEEEEecccC------CCcEEEEEECCCC---------hHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            356899999998763      3469999999976         5565566799999 689999999996  677888876


Q ss_pred             CC--ceEEEEEEeec
Q psy9829         163 HN--CISAQIKRTHF  175 (333)
Q Consensus       163 g~--~v~L~v~R~~~  175 (333)
                      ++  .++|+|+|...
T Consensus        83 ~~~~~v~l~v~r~~~   97 (103)
T d1uepa_          83 ARNGQVNLTVRRKVL   97 (103)
T ss_dssp             HHHTEEEEEEEEECC
T ss_pred             CCCCEEEEEEEeCCC
Confidence            44  58899988543

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.8e-10  Score=91.50  Aligned_cols=76  Identities=12%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      ...+.+|||+|.||.|.      +..+||++|.||++|         + +.+|++||+ +.||++++.+++  .++++|+
T Consensus        11 ~~g~~g~Gf~i~gg~d~------~~~v~V~~v~~g~~a---------~-~~~L~~GD~Il~INg~~v~~~t~~eav~li~   74 (103)
T d1wf7a_          11 LVGPAPWGFRLQGGKDF------NMPLTISSLKDGGKA---------S-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIK   74 (103)
T ss_dssp             EESSSCCSCCEEEETTT------TEEEEECCCCTTCHH---------H-HTTCCTTCBEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCCccEEEEcccCC------CCCEEEEecCCCChH---------H-HCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34567999999999863      457999999997754         3 245799999 689999999996  6778889


Q ss_pred             hcCCceEEEEEEeec
Q psy9829         161 IAHNCISAQIKRTHF  175 (333)
Q Consensus       161 ~~g~~v~L~v~R~~~  175 (333)
                      .+++.++|+|+|...
T Consensus        75 ~~~~~v~L~v~R~~~   89 (103)
T d1wf7a_          75 ACTGSLNMTLQRASA   89 (103)
T ss_dssp             HCSSEEEEEECCCSC
T ss_pred             cCCCeEEEEEEECCC
Confidence            999999999998543

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.4e-10  Score=90.66  Aligned_cols=74  Identities=11%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+.+|||.|.||.|.      +..|||++|.|||.         |+. .+|++||+ +.||+++|.+++  .+++.|+.
T Consensus        13 ~g~~~~Gf~i~gg~d~------~~~i~V~~v~~gs~---------A~~-~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~   76 (94)
T d1vb7a_          13 AGPAPWGFRISGGRDF------HTPIIVTKVTERGK---------AEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQ   76 (94)
T ss_dssp             CSSSCCSBCCEEETTT------TEEEECCCBCTTSS---------HHH-HTCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             ECCCcCCEEEEeeccC------CCCEEEEeccCCCh---------hhh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3467999999999873      45799999999875         442 45799999 689999999997  66778888


Q ss_pred             cCCceEEEEEEee
Q psy9829         162 AHNCISAQIKRTH  174 (333)
Q Consensus       162 ~g~~v~L~v~R~~  174 (333)
                      ++..++|+|+|..
T Consensus        77 ~~~~v~L~V~R~~   89 (94)
T d1vb7a_          77 SASPLRLQLDRSS   89 (94)
T ss_dssp             CCSSEEEEEECCC
T ss_pred             CCCeEEEEEEECC
Confidence            9999999998843

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=5.5e-10  Score=87.26  Aligned_cols=73  Identities=14%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.|.||.+.      ..+|||++|.|||+|         +...+|++||+ +.||+++|.+++  .++..|+.++
T Consensus        13 ~~~lG~~i~g~~~~------~~~v~I~~I~~g~~A---------~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   77 (95)
T d1n7ea_          13 GGPLGITISGTEEP------FDPIIISSLTKGGLA---------ERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG   77 (95)
T ss_dssp             TSCCCEEEECCSST------TSCCEEEEECTTSHH---------HHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CCcEeEEEEecccC------CCCEEEEEECCCChH---------HhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            56899999998652      245999999997755         54556799999 699999999996  6677888888


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..++|+|+|..
T Consensus        78 ~~v~l~v~r~~   88 (95)
T d1n7ea_          78 ETVTLKIKKQT   88 (95)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEECC
Confidence            89999998854

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=5.8e-10  Score=88.51  Aligned_cols=72  Identities=14%  Similarity=0.148  Sum_probs=57.2

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.|.||.++      +.+|||++|.|||+|         +..+ |++||+ |.||++++.+++  .+++.||.+
T Consensus        25 ~~~~lGf~i~gg~~~------~~gi~V~~V~~~s~A---------~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~   88 (104)
T d1wi2a_          25 PGAQLGFNIRGGKAS------QLGIFISKVIPDSDA---------HRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTA   88 (104)
T ss_dssp             TTCCCSEEEECCSSS------CCCCEEEEECTTSHH---------HHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             CCCCcceEEEccccC------CCCEEEEEECCCChh---------Hhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            356899999998763      467999999997754         4433 799999 689999999996  567777776


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      . .++|+|+|..
T Consensus        89 ~-~v~l~V~~~~   99 (104)
T d1wi2a_          89 R-EISMRVRFFS   99 (104)
T ss_dssp             S-SEEEEEECCC
T ss_pred             C-eEEEEEEECC
Confidence            4 6899997743

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=6.2e-10  Score=90.54  Aligned_cols=73  Identities=10%  Similarity=0.028  Sum_probs=59.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..+|||.|.||.|+|.     .+|||++|.|||+|         +..++|++||+ +.||++++.+++  .++.+||.+ 
T Consensus        27 ~~~lG~~i~gg~d~~~-----~~v~I~~v~~gg~A---------~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~   92 (118)
T d1v6ba_          27 EGSLDLALEGGVDSPV-----GKVVVSAVYEGGAA---------ERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAW   92 (118)
T ss_dssp             CSCCCCEEEEBTTSSS-----CSEEEEECCTTSHH---------HHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeeecCCC-----CCEEEEEECCCChH---------HhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcc
Confidence            4589999999999875     47999999997754         54455799999 689999999996  556677754 


Q ss_pred             ---CCceEEEEEEe
Q psy9829         163 ---HNCISAQIKRT  173 (333)
Q Consensus       163 ---g~~v~L~v~R~  173 (333)
                         +..|+|+|.|.
T Consensus        93 ~~~~~~V~L~v~r~  106 (118)
T d1v6ba_          93 NQGGDWIDLVVAVC  106 (118)
T ss_dssp             HHTCSEEEEEEECC
T ss_pred             cCCCCEEEEEEEeC
Confidence               66799999884

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.7e-10  Score=89.82  Aligned_cols=74  Identities=11%  Similarity=0.005  Sum_probs=61.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      +.+|||.|.+|.+.     +.++|||++|.|||+         |+..++|++||+ +.||+++|.+++  .++++||.++
T Consensus        26 ~~~lGi~i~~~~~~-----~~~gi~V~~I~~gg~---------A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~   91 (117)
T d1v62a_          26 GSALGISLTTTSLR-----NKSVITIDRIKPASV---------VDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS   91 (117)
T ss_dssp             TCCCCCEEEEECCS-----SSCEEEEEECCTTSH---------HHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS
T ss_pred             CCCcCEEEEeeccC-----CCCCEEEEEECCCCH---------HHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCC
Confidence            56899999998874     358999999999765         454556799999 689999999996  6678888899


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      ..++|+|.|..
T Consensus        92 ~~v~l~v~~~~  102 (117)
T d1v62a_          92 EKVRLEILPVP  102 (117)
T ss_dssp             SEEEEEECCBT
T ss_pred             CcEEEEEEECC
Confidence            99999998733

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-10  Score=91.61  Aligned_cols=74  Identities=12%  Similarity=0.059  Sum_probs=61.3

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...||||+|.||.|++      .+|||++|.|||.|         +..+.|++||+ +.||+++|.+++  .++++||.+
T Consensus        20 ~~~glG~~i~gg~~~~------~~i~I~~v~~gg~A---------~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~   84 (103)
T d1wfva_          20 GAKGFGFSIRGGREYK------MDLYVLRLAEDGPA---------IRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG   84 (103)
T ss_dssp             CTTSSSBCCEEETTTT------EEEECCCBCTTSHH---------HHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHH
T ss_pred             CCCccCEEEEeeccCC------CCEEEEEEcCCChH---------HhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcC
Confidence            3568999999998754      46999999997754         44445799999 689999999996  778899999


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      ++.++|+|+|..
T Consensus        85 ~~~v~l~v~R~~   96 (103)
T d1wfva_          85 GRRVRLLLKRGT   96 (103)
T ss_dssp             CSEECEEEECTT
T ss_pred             CCEEEEEEEECC
Confidence            999999998843

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=8.6e-10  Score=90.22  Aligned_cols=73  Identities=14%  Similarity=0.139  Sum_probs=59.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.|.||.+.      +.+|||++|.|||+|         +...+|++||+ |.||+++|.+.+  .++++|+.+ 
T Consensus        29 ~~glG~~i~gg~~~------~~~i~I~~v~~gg~A---------~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~   93 (123)
T d1ueqa_          29 NMGFGFTIIGGDEP------DEFLQVKSVIPDGPA---------AQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             TTSCSEEEECCSSS------SCCCEEEEECTTSHH---------HHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCeeCEEEEeecCC------CCCEEEEEECCCCHH---------HHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45899999998762      467999999997755         54556799999 699999999996  667888876 


Q ss_pred             -CCceEEEEEEee
Q psy9829         163 -HNCISAQIKRTH  174 (333)
Q Consensus       163 -g~~v~L~v~R~~  174 (333)
                       +.+++|+|+|..
T Consensus        94 ~g~~v~L~v~R~~  106 (123)
T d1ueqa_          94 IGQSVNLVLCRGY  106 (123)
T ss_dssp             TTCEEEEEEEESC
T ss_pred             CCCEEEEEEEcCC
Confidence             578999999854

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.5e-10  Score=89.10  Aligned_cols=76  Identities=14%  Similarity=0.010  Sum_probs=61.6

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      +.+.+|||+|.||.+....  ...++||++|.+||         ||+..++|++||+ +.+|++++.+++  .+++.||.
T Consensus        17 ~~~~~lG~~i~gg~~~~~~--~~~~~~V~~i~~~s---------~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~   85 (99)
T d1x5ra1          17 DPLSGFGLQLQGGIFATET--LSSPPLVCFIEPDS---------PAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRD   85 (99)
T ss_dssp             CTTTCCCEEEECCSCSSSB--CSSCCEEEEECTTS---------HHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHH
T ss_pred             CCCCCcCEEEEEeccCCCC--CCCCEEEEEECCCC---------hHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3467999999999988774  46789999999976         4555556799999 699999999997  67888888


Q ss_pred             cCCceEEEEE
Q psy9829         162 AHNCISAQIK  171 (333)
Q Consensus       162 ~g~~v~L~v~  171 (333)
                      +++.++|++.
T Consensus        86 ~~~~~~l~l~   95 (99)
T d1x5ra1          86 AALAHKVVLE   95 (99)
T ss_dssp             HHTTTCEEEE
T ss_pred             CCCCCEEEEE
Confidence            8777666654

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=6.4e-10  Score=88.16  Aligned_cols=72  Identities=11%  Similarity=0.030  Sum_probs=59.4

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.|.||.+       +.++||++|.|||+|         +..+.|++||+ +.||++++.+++  .++++|+.++
T Consensus        19 ~~glG~~i~~~~~-------~~gv~V~~v~~gs~A---------~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   82 (102)
T d1tp5a1          19 STGLGFNIVGGED-------GEGIFISFILAGGPA---------DLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   82 (102)
T ss_dssp             TSCCCEEEEECGG-------GCCEEEEEECTTSHH---------HHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCcccEEEEeccC-------CCCEEEEEecCCchH---------HHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCC
Confidence            5689999999864       357999999997754         55555799999 689999999996  5677888889


Q ss_pred             CceEEEEEEee
Q psy9829         164 NCISAQIKRTH  174 (333)
Q Consensus       164 ~~v~L~v~R~~  174 (333)
                      +.++|+|+|+.
T Consensus        83 ~~v~L~v~~~~   93 (102)
T d1tp5a1          83 QTVTIIAQYKP   93 (102)
T ss_dssp             SEEEEEEEECH
T ss_pred             CeEEEEEEECC
Confidence            99999998743

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=8.4e-10  Score=85.60  Aligned_cols=69  Identities=12%  Similarity=-0.064  Sum_probs=57.4

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||+|.+|.+       +.++||++|.|||+|         +.. +|++||+ +.||+.++.+++  .++.+|+.++
T Consensus        18 ~~~~Gf~i~~~~~-------~~g~~V~~V~~~g~A---------~~~-gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~   80 (91)
T d1m5za_          18 MEDFGFSVADGLL-------EKGVYVKNIRPAGPG---------DLG-GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             CSSSSEEEEECTT-------SSCEEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             CCceeEEEeccCC-------CCCEEEEEECCCChh---------HhC-cCCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence            4579999998753       468999999997654         433 3799999 689999999997  6677888899


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..++|+|.|
T Consensus        81 ~~v~L~v~R   89 (91)
T d1m5za_          81 NKLDLVISR   89 (91)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            999999988

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.1e-09  Score=84.07  Aligned_cols=73  Identities=12%  Similarity=0.062  Sum_probs=55.3

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      .+.+.+|||+|.+|.+...    .++|||++|.|||         ||+..++|++||+ +.||++++.+++  .++++||
T Consensus         6 k~~g~~LGi~i~~~~~~~~----~~~i~I~~v~~gg---------~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~   72 (85)
T d1x45a1           6 KQKGEILGVVIVESGWGSI----LPTVIIANMMHGG---------PAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK   72 (85)
T ss_dssp             CCTTSCCCEEEECCTTTSS----SCCCEEEEECTTC---------HHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eCCCCccCEEEEeCCCCCC----CCCEEEEEeCCCC---------HHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3457799999986554443    3689999999976         5565556799999 689999999997  6677888


Q ss_pred             hcCCceEEE
Q psy9829         161 IAHNCISAQ  169 (333)
Q Consensus       161 ~~g~~v~L~  169 (333)
                      .+++.++++
T Consensus        73 ~~~~~~~v~   81 (85)
T d1x45a1          73 GLKNQSRVK   81 (85)
T ss_dssp             TTTTCSEEE
T ss_pred             cCCCCCEEE
Confidence            776654444

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=2.3e-09  Score=84.42  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=63.1

Q ss_pred             ccceeeEEEecccCCCCC------CCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhh
Q psy9829          86 VGSTFVGSVLGARGALDL------ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSW  156 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~------~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~  156 (333)
                      .+.+|||.+.||.+.+..      +.....+||++|.|||+|         +.. +|++||+ +.||++++.+.+  .++
T Consensus        15 ~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A---------~~a-GL~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_          15 DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVA---------WRA-GLRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHH---------HHT-TCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHH---------HHc-CCCCCCEEEEEcCeEcCCCCHHHHH
Confidence            467999999999987632      124568999999998765         332 3799999 699999999996  678


Q ss_pred             hhhhhcCCceEEEEEEe
Q psy9829         157 QVFRIAHNCISAQIKRT  173 (333)
Q Consensus       157 ~alr~~g~~v~L~v~R~  173 (333)
                      .++|.++..++|.|.|.
T Consensus        85 ~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          85 NMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHTTTEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEEec
Confidence            88899999999999874

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.86  E-value=1.9e-09  Score=83.59  Aligned_cols=60  Identities=13%  Similarity=0.314  Sum_probs=54.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~~  283 (333)
                      .+++|..+.++   ++|++.| |++||+|++|||+++.++++++|..+|+. ....|.|+|.|+.
T Consensus        19 ~~v~V~~v~~g---sPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g   79 (92)
T d1fc6a3          19 KDVVVLTPAPG---GPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG   79 (92)
T ss_dssp             SCEEEEEECTT---SHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             ceEEEEEecCC---CChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECC
Confidence            36999999999   9999988 99999999999999999999999999995 4558999999975

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=1.6e-09  Score=86.25  Aligned_cols=73  Identities=12%  Similarity=0.009  Sum_probs=56.8

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.||||+|.|+.+       +++|||++|.|||.         |+..++|++||+ +.||++++.+++  .++.+||.+
T Consensus        11 ~~~glG~~i~~~~~-------~~~i~I~~v~~ggp---------A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~   74 (112)
T d1qaua_          11 KVGGLGFLVKERVS-------KPPVIISDLIRGGA---------AEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI   74 (112)
T ss_dssp             TTTBTSEEEEECSS-------SSCEEEEEECTTSH---------HHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             CCCcEeEEEEeecC-------CCCEEEEEEcCCCH---------HHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcC
Confidence            35699999998754       35799999999765         455455799999 699999999996  667788888


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      ++.+.+.+.++.
T Consensus        75 ~~~~~~~l~~~~   86 (112)
T d1qaua_          75 ASETHVVLILRG   86 (112)
T ss_dssp             CSSSEEEEEEEC
T ss_pred             CCCcEEEEEEeC
Confidence            777666665544

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.1e-09  Score=84.02  Aligned_cols=72  Identities=13%  Similarity=0.092  Sum_probs=55.8

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      .+.+.||||+|.||.|.      .++|||++|.+||.         |+. .+|++||+ +.||++++.+++  .++++|+
T Consensus        16 ~~~~~glG~~i~~g~~~------~~gi~V~~V~~gs~---------A~~-~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk   79 (101)
T d1x5na1          16 LVGSRGLGCSISSGPIQ------KPGIFISHVKPGSL---------SAE-VGLEIGDQIVEVNGVDFSNLDHKEAVNVLK   79 (101)
T ss_dssp             CCSSCCCCEEEEECCSS------SCSEEEEEECTTST---------TTT-TTCCTTCEEEEETTEETTSCCTTHHHHHHH
T ss_pred             eeCCCcccEEEeccCCC------CCCEEEEEECCCCh---------HHh-CCCCcccEEEEECCEECCCCCHHHHHHHHh
Confidence            45578999999999752      46899999999764         443 34799999 689999999997  5566777


Q ss_pred             hcCCceEEEEEE
Q psy9829         161 IAHNCISAQIKR  172 (333)
Q Consensus       161 ~~g~~v~L~v~R  172 (333)
                      .+++ +.+.|.|
T Consensus        80 ~~~~-~~l~v~~   90 (101)
T d1x5na1          80 SSRS-LTISIVA   90 (101)
T ss_dssp             HCSS-EEEEECS
T ss_pred             CCCC-EEEEEEE
Confidence            7765 6666654

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.8e-09  Score=85.92  Aligned_cols=71  Identities=8%  Similarity=-0.009  Sum_probs=55.2

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCC-ccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKG-EMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g-~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ..+|||.|.||.|.      +.+|||++|.|||.|         +. +.+|++||+ +.||++++.+++  .++++||.+
T Consensus        19 ~g~lG~~l~gg~d~------~~~i~V~~v~~g~~A---------~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~   83 (106)
T d2cs5a1          19 NGRFGFNVKGGYDQ------KMPVIVSRVAPGTPA---------DLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   83 (106)
T ss_dssp             SSCCSEEEEEEGGG------TEEEEEEEECSSSTT---------TSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             CCCccEEEEeeecC------CCCEEEEEEcCCCcc---------hhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45799999999874      356999999997654         43 345799999 689999999996  667777765


Q ss_pred             C----CceEEEEEE
Q psy9829         163 H----NCISAQIKR  172 (333)
Q Consensus       163 g----~~v~L~v~R  172 (333)
                      +    ..+.|+|+|
T Consensus        84 ~~~~~~~v~L~vrp   97 (106)
T d2cs5a1          84 CERHSGELMLLVRP   97 (106)
T ss_dssp             HHCCSSCEEEEEEC
T ss_pred             CCCCCcEEEEEECC
Confidence            3    347788865

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=9.6e-10  Score=96.75  Aligned_cols=85  Identities=15%  Similarity=0.147  Sum_probs=75.0

Q ss_pred             CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHh
Q psy9829           2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRS   80 (333)
Q Consensus         2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~rae   80 (333)
                      +|.....+.+++|+.++|+.++++|+.||||+++++++.|+.....|++|||.|||.+.++ +|+.|..++.+.+..|..
T Consensus        70 lE~~~~~g~~YGt~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~  149 (205)
T d1s96a_          70 LEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMA  149 (205)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred             eeEEEECCceeccccchHHHHHhcCCceeecCcHHHHHHHHhhhcccceeeeeccchHHHHHHHHhcCCchHHHHHHHHH
Confidence            4556667889999999999999999999999999999999999999999999999998877 899998888888888776


Q ss_pred             hccccc
Q psy9829          81 RVLFPV   86 (333)
Q Consensus        81 r~~qE~   86 (333)
                      ++..|.
T Consensus       150 ~a~~E~  155 (205)
T d1s96a_         150 QAVAEM  155 (205)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.2e-09  Score=86.78  Aligned_cols=74  Identities=14%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.|.||.|++.     +.+||++|.|||+         |+...+|++||+ +.||++++.+++  +++++||.+
T Consensus        15 ~~~~lG~~i~gg~~~~~-----~~~~I~~i~~gg~---------A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a   80 (103)
T d1ufxa_          15 SAATLGIAIEGGANTRQ-----PLPRIVTIQRGGS---------AHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             CSSSCCEEEECBTTSSC-----SSCEEEEECTTSH---------HHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             CCCccCEEEeeecCCCC-----CCEEEEEEcCCcc---------hhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHc
Confidence            46699999999998643     6799999999765         454555799999 699999999996  667788876


Q ss_pred             C-----CceEEEEEEe
Q psy9829         163 H-----NCISAQIKRT  173 (333)
Q Consensus       163 g-----~~v~L~v~R~  173 (333)
                      +     ..++|+|.+.
T Consensus        81 ~~~~~~~~~~l~v~~~   96 (103)
T d1ufxa_          81 FKTKDRDYIDFLVTEF   96 (103)
T ss_dssp             HHCSSCSEEEEEECCC
T ss_pred             cCCCccceEEEEEeCC
Confidence            4     3467777553

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.1e-09  Score=88.45  Aligned_cols=73  Identities=12%  Similarity=0.184  Sum_probs=57.6

Q ss_pred             ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh
Q psy9829          84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR  160 (333)
Q Consensus        84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr  160 (333)
                      .+.+.+|||.|.||+|.      +.+|||++|.|||+|         +.. +|++||+ |.||+++|.+++  .+++.||
T Consensus        28 ~~~~~~lGf~i~gg~~~------~~gv~V~~V~~g~~A---------~~~-gL~~GD~Il~INg~~v~~~s~~evv~~lr   91 (128)
T d1uf1a_          28 LGDGRSLGLTIRGGAEY------GLGIYITGVDPGSEA---------EGS-GLKVGDQILEVNGRSFLNILHDEAVRLLK   91 (128)
T ss_dssp             CCSSCCCCEEEECCTTT------TCCCEEEEECTTCHH---------HHH-TCCTTCEEEEETTEECSSCCHHHHHHHHT
T ss_pred             ECCCCccCEEEEeeccC------CCCEEEEEECCCChH---------Hhc-CCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            34467999999999884      357999999998754         433 3799999 689999999996  5677777


Q ss_pred             hcCCceEEEEEEe
Q psy9829         161 IAHNCISAQIKRT  173 (333)
Q Consensus       161 ~~g~~v~L~v~R~  173 (333)
                      .++ .+.|+|+|.
T Consensus        92 ~~~-~v~l~v~~~  103 (128)
T d1uf1a_          92 SSR-HLILTVKDV  103 (128)
T ss_dssp             TCS-EEEEEEECC
T ss_pred             cCC-cEEEEEEEC
Confidence            654 588888774

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.6e-09  Score=84.33  Aligned_cols=69  Identities=9%  Similarity=0.044  Sum_probs=56.8

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.|.||.        |.+|||++|.|||+|         +. .+|++||+ +.||+++|.+.+  .+++.|+.++
T Consensus        29 ~~glG~~i~gg~--------~~gi~V~~V~~gs~A---------~~-~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~   90 (117)
T d1uita_          29 SEPLGISIVSGE--------KGGIYVSKVTVGSIA---------HQ-AGLEYGDQLLEFNGINLRSATEQQARLIIGQQC   90 (117)
T ss_dssp             SCCCCEEEEECT--------TSCEEEEEECTTSHH---------HH-HTCCTTCEECEETTEETTTCCHHHHHHHTTSCC
T ss_pred             CCccCEEEEccC--------CCCEEEEEEecCChH---------Hh-CCCCCCCEeeeECCcccCCCCHHHHHHHHHCCC
Confidence            568999999874        457999999998754         32 35799999 599999999986  5677888889


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|+|+|+
T Consensus        91 ~~v~l~v~~~  100 (117)
T d1uita_          91 DTITILAQYN  100 (117)
T ss_dssp             SEEEEEECCC
T ss_pred             CeEEEEEEEC
Confidence            9999999773

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.9e-09  Score=84.09  Aligned_cols=70  Identities=16%  Similarity=0.108  Sum_probs=54.4

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..+|||.|.||.|.      +.+|||+.|.|||+         |+..+ |++||+ +.||+++|.+++  .++++||.++
T Consensus        20 ~~glG~~i~gg~~~------~~~i~V~~v~~gg~---------A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~   83 (101)
T d1ueza_          20 HEGLGFSIRGGSEH------GVGIYVSLVEPGSL---------AEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSK   83 (101)
T ss_dssp             TTCSSEEEEECTTT------TCCEEEEEECTTSH---------HHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSS
T ss_pred             CCeeCEEEEecccC------CCCEEEEEECCCCh---------HHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            45899999999874      34799999999764         55433 799999 689999999996  6677888776


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      . +.|.|+|+
T Consensus        84 ~-~~l~V~~~   92 (101)
T d1ueza_          84 K-LVLSVYSA   92 (101)
T ss_dssp             S-CCEEECCC
T ss_pred             C-EEEEEEEC
Confidence            5 55666553

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.3e-08  Score=78.75  Aligned_cols=70  Identities=13%  Similarity=0.027  Sum_probs=57.0

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH  163 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g  163 (333)
                      ..||||.|.|+.       ++.++||++|.|||+|         +.. +|++||+ +.||+++|.+++  .+++.|+.++
T Consensus        13 ~~g~Gf~i~~~~-------~~~~~~V~~V~~g~~A---------~~a-Gl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~   75 (91)
T d1g9oa_          13 PNGYGFHLHGEK-------GKLGQYIRLVEPGSPA---------EKA-GLLAGDRLVEVNGENVEKETHQQVVSRIRAAL   75 (91)
T ss_dssp             TTBCCEEEEECT-------TCSSEEEEEECTTSHH---------HHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             CCeeeEEEEecC-------CCCCEEEEEEcCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            458999999863       3467999999997754         443 3799999 689999999997  6678888899


Q ss_pred             CceEEEEEEe
Q psy9829         164 NCISAQIKRT  173 (333)
Q Consensus       164 ~~v~L~v~R~  173 (333)
                      ..++|.|.|+
T Consensus        76 ~~v~L~v~~~   85 (91)
T d1g9oa_          76 NAVRLLVVDP   85 (91)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEECC
Confidence            9999999764

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.1e-08  Score=76.77  Aligned_cols=68  Identities=9%  Similarity=0.012  Sum_probs=54.8

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...||||.+.|+          ..+||++|.|||.|         +.. +|++||+ +.||++++.+.+  ..+..++.+
T Consensus         6 ~~~g~Gf~l~~~----------~~~~V~~V~~gspA---------~~a-GL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~   65 (77)
T d2f5ya1           6 GKDGFGFTICCD----------SPVRVQAVDSGGPA---------ERA-GLQQLDTVLQLNERPVEHWKCVELAHEIRSC   65 (77)
T ss_dssp             BTTBTSEEEECS----------SSCEEEEECTTSHH---------HHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CCCcccEEEECC----------CCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHCC
Confidence            345899999853          34899999997755         433 3799999 699999999996  556788899


Q ss_pred             CCceEEEEEEe
Q psy9829         163 HNCISAQIKRT  173 (333)
Q Consensus       163 g~~v~L~v~R~  173 (333)
                      +..++|.|.|.
T Consensus        66 ~~~v~L~v~R~   76 (77)
T d2f5ya1          66 PSEIILLVWRM   76 (77)
T ss_dssp             SSEEEEEEEEC
T ss_pred             CCEEEEEEEEE
Confidence            99999999984

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1e-08  Score=78.75  Aligned_cols=70  Identities=9%  Similarity=-0.021  Sum_probs=56.3

Q ss_pred             cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829          85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI  161 (333)
Q Consensus        85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~  161 (333)
                      ..+.+|||.+.++.        +.++||++|.|||.|         +..++|++||+ +.||+++|.+.+  .++++|+.
T Consensus        10 ~~~~~lG~~l~~~~--------~~~~~I~~v~~gg~A---------~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~   72 (88)
T d1kwaa_          10 NTDEPMGITLKMNE--------LNHCIVARIMHGGMI---------HRQGTLHVGDEIREINGISVANQTVEQLQKMLRE   72 (88)
T ss_dssp             CSSSCCCEEEECSC--------GGGEEEEEECTTSHH---------HHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHH
T ss_pred             CCCCCccEEEEEcC--------CCCEEEEEECCCCHH---------HHcCCCccCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            34678999998652        457999999997754         54555799999 699999999986  66778888


Q ss_pred             cCCceEEEEE
Q psy9829         162 AHNCISAQIK  171 (333)
Q Consensus       162 ~g~~v~L~v~  171 (333)
                      ++.+++|+|.
T Consensus        73 ~~~~v~L~i~   82 (88)
T d1kwaa_          73 MRGSITFKIV   82 (88)
T ss_dssp             CCEEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            8888999884

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2e-08  Score=75.77  Aligned_cols=62  Identities=13%  Similarity=-0.038  Sum_probs=51.8

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      ...+|||++.||             +|++|.|||+|         +. .+|++||+ +.||++++.+++  .+++.||.+
T Consensus        11 ~~~~lGf~i~~g-------------~V~~V~~gs~A---------~~-~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~   67 (79)
T d1y7na1          11 LRYQLGFSVQNG-------------IICSLMRGGIA---------ER-GGVRVGHRIIEINGQSVVATPHEKIVHILSNA   67 (79)
T ss_dssp             TTSCCCEEEETT-------------EEEEECTTSHH---------HH-HTCCSSCEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred             CCCCcCEEEECC-------------EEEEEcCCCHH---------HH-CCCCCCCEEEEECCEEeCCCCHHHHHHHHHcC
Confidence            357899999876             79999998754         42 45799999 699999999996  667888989


Q ss_pred             CCceEEEE
Q psy9829         163 HNCISAQI  170 (333)
Q Consensus       163 g~~v~L~v  170 (333)
                      ++.++|.|
T Consensus        68 ~~~v~l~v   75 (79)
T d1y7na1          68 VGEIHMKT   75 (79)
T ss_dssp             CEEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999887

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.5e-08  Score=85.32  Aligned_cols=57  Identities=30%  Similarity=0.486  Sum_probs=51.8

Q ss_pred             CcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchh
Q psy9829           3 EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKS   59 (333)
Q Consensus         3 ~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~   59 (333)
                      |-....+.+++|+.++|++++++|++||||++++++++|+.....|++|||.||+++
T Consensus        71 e~~~~~g~~YGt~~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~~~~IfI~pps~~  127 (178)
T d1kgda_          71 EYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTIT  127 (178)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCC
T ss_pred             EEeeecccceeeeeecccchhccCceEEeccchhhhhhhhccccccceeeEeccccc
Confidence            334456789999999999999999999999999999999999999999999999865

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=5.3e-08  Score=79.76  Aligned_cols=70  Identities=11%  Similarity=0.045  Sum_probs=56.1

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.|.+         ++++|||..|.|||         ||+..++|++||+ +.||+++|.+++  .++++||.+ 
T Consensus        37 ~~GlG~~i~~---------~~~~i~V~~v~~gg---------~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~   98 (126)
T d1wifa_          37 NLGLGLVVIQ---------NGPYLQISHLINKG---------AAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT   98 (126)
T ss_dssp             TTCCCCCEEE---------ETTEEEECCCCTTS---------SGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC
T ss_pred             CCcEEEEEEe---------cCCcEEEEEECCCC---------hHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCC
Confidence            5689999974         25689999999976         5555556799999 689999999986  567788865 


Q ss_pred             -CCceEEEEEEee
Q psy9829         163 -HNCISAQIKRTH  174 (333)
Q Consensus       163 -g~~v~L~v~R~~  174 (333)
                       +..|+|+|+|-.
T Consensus        99 ~g~~v~L~v~R~~  111 (126)
T d1wifa_          99 IGTVLQIKAYRGF  111 (126)
T ss_dssp             SSCEEEEEEESSS
T ss_pred             CCCEEEEEEEeCC
Confidence             468999998854

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=6.4e-08  Score=76.04  Aligned_cols=67  Identities=10%  Similarity=0.065  Sum_probs=54.3

Q ss_pred             ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829          86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA  162 (333)
Q Consensus        86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~  162 (333)
                      .+.+|||.|.++         +.+|||++|.|||.|         +..++|++||+ +.||++++.|++  .+++.||.+
T Consensus        28 ~~~~lG~~v~~~---------~~~i~I~~V~~gs~A---------~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   89 (100)
T d1va8a1          28 RDIPLGATVRNE---------MDSVIISRIVKGGAA---------EKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM   89 (100)
T ss_dssp             TTCCCCEEEEEC---------SSSEEEEEECTTSHH---------HHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCCCccEEEEec---------CCCEEEEEECCCChh---------hhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcC
Confidence            366899999753         347999999998765         43445699999 689999999996  678888988


Q ss_pred             CCceEEEE
Q psy9829         163 HNCISAQI  170 (333)
Q Consensus       163 g~~v~L~v  170 (333)
                      +..++|.|
T Consensus        90 ~~~v~L~v   97 (100)
T d1va8a1          90 HGTLTFVL   97 (100)
T ss_dssp             CEEEEEEE
T ss_pred             CCeEEEEE
Confidence            88899887

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.2e-07  Score=72.05  Aligned_cols=67  Identities=15%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..+|||.+.++         +.++||++|.|||.|         +.. +|++||+ +.||++++.+.+  .++++||.+ 
T Consensus        13 ~~~lG~~l~~~---------~~g~~V~~v~~gspA---------~~a-GL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~   73 (85)
T d1w9ea1          13 DGKIGLRLKSI---------DNGIFVQLVQANSPA---------SLV-GLRFGDQVLQINGENCAGWSSDKAHKVLKQAF   73 (85)
T ss_dssp             TSCCSEEEEEE---------TTEEEEEEECTTSHH---------HHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCCEeEEEEeC---------CCCEEEEEECCCCHH---------HHc-CCCCccEEEEECCEEeCCCCHHHHHHHHhcCC
Confidence            45899999754         458999999998755         433 3799999 699999999985  567778765 


Q ss_pred             CCceEEEEEE
Q psy9829         163 HNCISAQIKR  172 (333)
Q Consensus       163 g~~v~L~v~R  172 (333)
                      +..++|+|++
T Consensus        74 ~~~v~l~v~~   83 (85)
T d1w9ea1          74 GEKITMTIRD   83 (85)
T ss_dssp             SSEEEEEEEC
T ss_pred             CCEEEEEEeC
Confidence            5679999975

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=5.2e-08  Score=83.14  Aligned_cols=82  Identities=12%  Similarity=0.189  Sum_probs=69.7

Q ss_pred             CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCcccccccccc-ccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH
Q psy9829           2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYA-QFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR   79 (333)
Q Consensus         2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~-~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra   79 (333)
                      .|.......+++|+.++|+.++++|++||+|+++++++.|+.. .+.|++||+.|++.+.|+ +|+.|..++.+.+..|.
T Consensus        68 ~e~~~~~g~~Yg~~~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl  147 (186)
T d1gkya_          68 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRL  147 (186)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred             eeeeEEccceeecchhhHHHHhcCCCeEEecchHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhccchhHHHHHHH
Confidence            3445566778999999999999999999999999999999985 788999999999999886 78888777777777776


Q ss_pred             hhcc
Q psy9829          80 SRVL   83 (333)
Q Consensus        80 er~~   83 (333)
                      .+..
T Consensus       148 ~~~~  151 (186)
T d1gkya_         148 SAAQ  151 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.6e-07  Score=71.22  Aligned_cols=61  Identities=8%  Similarity=-0.063  Sum_probs=50.7

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHN  164 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~  164 (333)
                      .+|||.|.||             +|++|.+||.         |+..+ |++||+ +.||++++.+++  .+++.|+.++.
T Consensus        16 g~~Gf~i~~g-------------~V~~v~~g~~---------A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~   72 (82)
T d1r6ja_          16 GHVGFIFKNG-------------KITSIVKDSS---------AARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGT   72 (82)
T ss_dssp             SCCCEEEETT-------------EEEEECTTSH---------HHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CCcCEEEEEE-------------EEEEECCCCh---------HHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCC
Confidence            4699999876             5999999765         45443 799999 689999999996  66788899999


Q ss_pred             ceEEEEE
Q psy9829         165 CISAQIK  171 (333)
Q Consensus       165 ~v~L~v~  171 (333)
                      .++|+|-
T Consensus        73 ~v~l~v~   79 (82)
T d1r6ja_          73 VVTITIM   79 (82)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999873

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=1.1e-07  Score=80.36  Aligned_cols=72  Identities=10%  Similarity=0.100  Sum_probs=64.3

Q ss_pred             CeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhcc
Q psy9829          12 GIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRVL   83 (333)
Q Consensus        12 ~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~~   83 (333)
                      +.|+.+++++++++|++|++|+++++++.|+.....|++|||.|||.+.|+ +|+.|..++.+.+..|..+..
T Consensus        80 ~g~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl~~~~  152 (182)
T d1znwa1          80 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTAR  152 (182)
T ss_dssp             EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhcCCccccccccchhhhhhhcCcceeEEeeecccHHHHHHHhhhcCcchHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999998888 688888787777777765543

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.5e-07  Score=70.37  Aligned_cols=66  Identities=11%  Similarity=0.075  Sum_probs=48.7

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||+|.||.+..        .++..+.+             +...+|++||+ +.||+++|.+++  .++++||.+ 
T Consensus        20 ~~glGf~i~g~~~~~--------~~~~~~~~-------------~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~   78 (96)
T d1ujva_          20 AQGFGFTIADSPTGQ--------RVKQILDI-------------QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             SSSSSEEEEEETTEE--------EEEEESCG-------------GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CCcccEEEEeeCCCc--------eEeeccCc-------------ccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            458999999876543        23333322             22345799999 689999999996  678888875 


Q ss_pred             -CCceEEEEEEe
Q psy9829         163 -HNCISAQIKRT  173 (333)
Q Consensus       163 -g~~v~L~v~R~  173 (333)
                       +..++|+|+|.
T Consensus        79 ~g~~v~l~v~R~   90 (96)
T d1ujva_          79 IGSETSLIIHRG   90 (96)
T ss_dssp             TTSEEEEEEECC
T ss_pred             CCCEEEEEEEEC
Confidence             67899999883

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=2.1e-07  Score=74.21  Aligned_cols=68  Identities=6%  Similarity=0.001  Sum_probs=52.5

Q ss_pred             cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829          87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA-  162 (333)
Q Consensus        87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~-  162 (333)
                      ..||||.|.|+          ..+||++|.|||         ||+..+ |++||+ +.||+++|.+++  .++++||.+ 
T Consensus        25 ~~g~Gf~i~g~----------~~v~V~~V~~~s---------pA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~   84 (111)
T d1vaea_          25 EGDLGFTLRGN----------TPVQVHFLDPHC---------SASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFG   84 (111)
T ss_dssp             SSCCSCCEESS----------SSCEECCCCTTS---------SHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTT
T ss_pred             CCccCEEEECC----------ccEEEEEEcCCC---------hHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCC
Confidence            34899999763          348999999976         455443 799999 689999999996  567788876 


Q ss_pred             CCceEEEEEEee
Q psy9829         163 HNCISAQIKRTH  174 (333)
Q Consensus       163 g~~v~L~v~R~~  174 (333)
                      +..++|.|.|..
T Consensus        85 ~~~v~l~v~~~~   96 (111)
T d1vaea_          85 GEEVEMKVVSLL   96 (111)
T ss_dssp             TSEECEEEECEE
T ss_pred             CCeEEEEEECCC
Confidence            456888887644

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=2.3e-07  Score=79.51  Aligned_cols=82  Identities=18%  Similarity=0.235  Sum_probs=69.9

Q ss_pred             CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHh
Q psy9829           2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRS   80 (333)
Q Consensus         2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~rae   80 (333)
                      +|.....+..++|+.++|+.++..|+.|+++++++++..|+.....|++||+.||+.+.++ +|+.|..++.+.+..|..
T Consensus        67 ~e~~~~~~~~Yg~~~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~  146 (190)
T d1lvga_          67 IEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLA  146 (190)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred             eeeeEEcCcceecccchhhhhhcCCCceeecchHhhhhhhhhccccceEEEEecchHHHHHHHHhhccccchHHHHHHHH
Confidence            3445566778999999999999999999999999999999999999999999999988876 777777777777777765


Q ss_pred             hcc
Q psy9829          81 RVL   83 (333)
Q Consensus        81 r~~   83 (333)
                      +..
T Consensus       147 ~~~  149 (190)
T d1lvga_         147 AAR  149 (190)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=5e-07  Score=68.86  Aligned_cols=59  Identities=29%  Similarity=0.461  Sum_probs=52.0

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .|++|.+|.|+   ++|++- .|++||+|++|||+.+.  +.+|..++++..++.+.|+|.|+..
T Consensus        25 ~Gv~V~~V~~~---spA~~a-Gl~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~   83 (88)
T d1ky9b2          25 QGVVVNNVKTG---TPAAQI-GLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDS   83 (88)
T ss_dssp             SCCCBCCCCSS---CTTGGG-TCCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSC
T ss_pred             CeEEEEEECCC---CHHHHc-CCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCE
Confidence            46899999999   777765 49999999999999885  6789999999999999999999864

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.16  E-value=1.1e-06  Score=66.78  Aligned_cols=57  Identities=19%  Similarity=0.274  Sum_probs=47.1

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEecc
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRRE  282 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~  282 (333)
                      .|+||.+|.|+   ++|++-| |++||+|++|||+...++  .+....|..  ..+.+.|+|.|.
T Consensus        16 ~Gv~V~~V~~~---spA~~aG-l~~GD~I~~ing~~i~~~--~~~~~~i~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1          16 LGAKIVEVVAG---GAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDP   74 (88)
T ss_dssp             CSEEEEEECTT---STTGGGT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEET
T ss_pred             CcEEEEEECCC---CHHHHcC-CCCCCEEEEeCCCcCCcH--HHHHHHHHhCCCCCEEEEEEEEC
Confidence            47999999999   8888776 999999999999998765  555666655  357999999984

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.96  E-value=8e-06  Score=63.89  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=48.7

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~  283 (333)
                      .|++|.+|.++   ++|++ + |++||+|++|||+...  +.+|-...|...  .+.|.|.|.|+.
T Consensus         3 ~Gv~V~~V~~~---sPA~~-~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           3 DGVQIDSVVPG---SPASK-V-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCEEEEEECSS---SGGGG-T-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CcEEEEEECCC---ChHHh-c-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECC
Confidence            36999999999   88864 5 9999999999998876  577888888764  588999999974

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=97.94  E-value=5e-06  Score=63.69  Aligned_cols=69  Identities=14%  Similarity=0.140  Sum_probs=51.1

Q ss_pred             ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhh-hcC
Q psy9829          88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFR-IAH  163 (333)
Q Consensus        88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr-~~g  163 (333)
                      .|+|+.+....      +...+|+|+.|.|||         ||+.. +|++||. +.||+.++++++  .++..|+ ..+
T Consensus         5 ~GiGi~i~~~~------~~~~~v~V~~v~~gs---------PA~~A-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g   68 (92)
T d1fc6a3           5 TGVGLEITYDG------GSGKDVVVLTPAPGG---------PAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLLQGEAD   68 (92)
T ss_dssp             BBCSEEEEECT------TCSSCEEEEEECTTS---------HHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHCBSTT
T ss_pred             EEEEEEEEEcC------CCCceEEEEEecCCC---------ChhHH-hhHcCCcceecCceEcCCCCHHHHHHHhhCCCC
Confidence            37888886321      124579999999976         55654 3799999 699999999885  4455565 356


Q ss_pred             CceEEEEEE
Q psy9829         164 NCISAQIKR  172 (333)
Q Consensus       164 ~~v~L~v~R  172 (333)
                      ..++|.|+|
T Consensus        69 ~~v~l~i~R   77 (92)
T d1fc6a3          69 SQVEVVLHA   77 (92)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            679999988

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.8e-05  Score=60.78  Aligned_cols=58  Identities=19%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP  284 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~  284 (333)
                      .|++|.++.++   ++|++- .|++||+|++|||+...  +.++..++++ ..+.+.|.|.|+..
T Consensus        31 ~Gv~V~~V~~~---spA~~a-Gl~~GDiI~~ing~~V~--s~~dl~~~l~-~g~~v~l~v~R~g~   88 (100)
T d1lcya1          31 HGVLIHKVILG---SPAHRA-GLRPGDVILAIGEQMVQ--NAEDVYEAVR-TQSQLAVQIRRGRE   88 (100)
T ss_dssp             SCEEEEEECTT---SHHHHH-TCCTTCEEEEETTEECC--SHHHHHHHHT-TCSSEEEEEEETTE
T ss_pred             CcEEEEEECCC---chHhhc-CCCCCcEEEEECCEEcC--CHHHHHHHhc-CCCEEEEEEEECCE
Confidence            57999999999   776654 59999999999998876  5678888886 57889999999863

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=9.1e-06  Score=62.93  Aligned_cols=68  Identities=18%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             cccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCCCC
Q psy9829         213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPRP  286 (333)
Q Consensus       213 d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~~~  286 (333)
                      .+|+....|++|.+|.++   ++|++- .|++||+|++|||+...+.  .+....|..  ..+.+.|+|.|+....
T Consensus        19 ~~gl~~~~Gv~V~~V~~~---spA~~a-Gl~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~   88 (99)
T d1sota1          19 GGGIDQLQGIVVNEVSPD---GPAANA-GIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQL   88 (99)
T ss_dssp             --------CEECCCCCSS---STTTSS-SCCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTCEEEECC-----CC
T ss_pred             HcCCCCCCccEEEEecCC---CCHHHc-CCCcceEEEEECCEecccH--HHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            455554568999999999   777655 4999999999999887765  344555544  4478999999987543

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.2e-05  Score=60.97  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=47.9

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEE
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKR  172 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R  172 (333)
                      .+.|++|++|.|||         ||+. .+|++||+ +.+|+..++++.....+++..+..+.|.|+|
T Consensus        23 ~~~Gv~V~~V~~~s---------pA~~-aGl~~GDvI~~ing~~v~~~~~~~~~l~~~~~~v~l~v~R   80 (88)
T d1ky9b2          23 KDQGVVVNNVKTGT---------PAAQ-IGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQR   80 (88)
T ss_dssp             TTSCCCBCCCCSSC---------TTGG-GTCCSSCEEEEETTEECSSHHHHHHHTTTCCSCCCEEEES
T ss_pred             CCCeEEEEEECCCC---------HHHH-cCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCEEEEEEEE
Confidence            56799999999976         4554 45899999 6899999999877777888888889999987

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1e-05  Score=61.99  Aligned_cols=67  Identities=21%  Similarity=0.328  Sum_probs=51.5

Q ss_pred             ecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCC
Q psy9829         212 IDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP  284 (333)
Q Consensus       212 ~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~  284 (333)
                      ..+|+.-..|+||.+|.++   ++|++-| |++||+|++|||+...+.  ++..++|...  .+.+.|.|.|+..
T Consensus        19 ~~~gl~~~~Gv~V~~V~~~---spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          19 KAMKVDAQRGAFVSQVLPN---SSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             HTSCCTTCCSEECCCCTTC---SSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             HHcCCCCCCCcEEEECCCC---hhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            3456554568999999999   7776554 999999999999887765  4455666653  5789999999864

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=0.00011  Score=55.20  Aligned_cols=67  Identities=15%  Similarity=0.059  Sum_probs=50.2

Q ss_pred             eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCc
Q psy9829          89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNC  165 (333)
Q Consensus        89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~  165 (333)
                      +||+.+..       ..+..|++|++|.|||         ||+.- +|++||+ +.+|+..+++......+++.  .+..
T Consensus         4 ~LGv~~~~-------~~~~~Gv~V~~V~~~s---------pA~~a-Gl~~GD~I~~ing~~i~~~~~~~~~i~~~~~g~~   66 (88)
T d2z9ia1           4 SLGVQVTN-------DKDTLGAKIVEVVAGG---------AAANA-GVPKGVVVTKVDDRPINSADALVAAVRSKAPGAT   66 (88)
T ss_dssp             ECCEEEEC-------CC-CCSEEEEEECTTS---------TTGGG-TCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCE
T ss_pred             EEeEEEEe-------cCCCCcEEEEEECCCC---------HHHHc-CCCCCCEEEEeCCCcCCcHHHHHHHHHhCCCCCE
Confidence            57777752       1245799999999976         55653 4899999 58999999988766566655  4668


Q ss_pred             eEEEEEE
Q psy9829         166 ISAQIKR  172 (333)
Q Consensus       166 v~L~v~R  172 (333)
                      ++|.|.|
T Consensus        67 v~l~v~r   73 (88)
T d2z9ia1          67 VALTFQD   73 (88)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999988

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.45  E-value=0.00016  Score=55.20  Aligned_cols=62  Identities=6%  Similarity=0.017  Sum_probs=47.5

Q ss_pred             CeEEEEEEccCcc-----cCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccC
Q psy9829         220 NKIFVKEVTHRLD-----NNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV  283 (333)
Q Consensus       220 ~~IfI~~I~~g~~-----ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~  283 (333)
                      .++.|.+|.+|.-     .++|++-|-+++||+|++|||+++.++.  +..++|++. ...|.|+|.|..
T Consensus        12 ~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V~L~i~R~g   79 (91)
T d1k32a1          12 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKG   79 (91)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSS
T ss_pred             CeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEEEEEEEeCC
Confidence            4688999998722     2677776645899999999999987654  667777764 457999999865

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.31  E-value=8.3e-05  Score=56.20  Aligned_cols=60  Identities=18%  Similarity=0.179  Sum_probs=46.6

Q ss_pred             CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCCC
Q psy9829         220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPR  285 (333)
Q Consensus       220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~~  285 (333)
                      .|++|..+.++   ++|.+- .|++||+|++|||+++.+  .++...+++.  ..+.+.|.|.|+...
T Consensus        19 ~G~~v~~v~~~---s~~~~a-Gl~~GDiI~~ing~~v~~--~~~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          19 LGYRVSPGKDP---VLFESI-GLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEEECSCH---HHHHHT-TCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEEecCCCC---CHHHHC-CCCCCCEEEEECCEEeec--HHHHHHHHHhhccccccEEEEEECCEE
Confidence            46889999998   555444 599999999999988775  4556666655  567899999998643

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00018  Score=54.97  Aligned_cols=59  Identities=19%  Similarity=0.334  Sum_probs=46.3

Q ss_pred             CCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEE
Q psy9829         103 LANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKR  172 (333)
Q Consensus       103 ~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R  172 (333)
                      +.+.+.|++|++|.|||.         |.. .+|++||+ +.+|+..|+++....++++ .+..+.+.|.|
T Consensus        26 ~~~~~~Gv~V~~V~~~sp---------A~~-aGl~~GDiI~~ing~~V~s~~dl~~~l~-~g~~v~l~v~R   85 (100)
T d1lcya1          26 FPDVQHGVLIHKVILGSP---------AHR-AGLRPGDVILAIGEQMVQNAEDVYEAVR-TQSQLAVQIRR   85 (100)
T ss_dssp             SCCCSSCEEEEEECTTSH---------HHH-HTCCTTCEEEEETTEECCSHHHHHHHHT-TCSSEEEEEEE
T ss_pred             CCcCCCcEEEEEECCCch---------Hhh-cCCCCCcEEEEECCEEcCCHHHHHHHhc-CCCEEEEEEEE
Confidence            334578999999999774         443 45899999 6999999998876666775 56778899888

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.47  E-value=0.0011  Score=51.20  Aligned_cols=54  Identities=13%  Similarity=0.134  Sum_probs=43.2

Q ss_pred             ceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEe
Q psy9829         109 STKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRT  173 (333)
Q Consensus       109 ~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~  173 (333)
                      |++|+.|.+||         ||++ . |++||+ +.+||..+++..+-..+++.  .+..++|.|.|-
T Consensus         4 Gv~V~~V~~~s---------PA~~-~-L~~GD~I~~ing~~v~~~~~l~~~i~~~~~G~~v~l~v~R~   60 (103)
T d2hgaa1           4 GVQIDSVVPGS---------PASK-V-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQG   60 (103)
T ss_dssp             CEEEEEECSSS---------GGGG-T-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEETTE
T ss_pred             cEEEEEECCCC---------hHHh-c-CCCCCEEEEECCEEcCCHHHHHHHHhhCCCCCEEEEEEEEC
Confidence            89999999976         5665 3 799999 58999999887655566654  477899999883

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.00098  Score=50.42  Aligned_cols=56  Identities=9%  Similarity=0.040  Sum_probs=43.4

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCEE-EEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I-~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      ..|++|++|.|||         ||+. .+|++||+| .+|++.+++......+++.  .+..+.|.|.|
T Consensus        26 ~~Gv~V~~V~~~s---------pA~~-aGl~~gDvI~~i~g~~v~~~~~l~~~l~~~~~g~~v~l~v~R   84 (94)
T d1ky9a1          26 QRGAFVSQVLPNS---------SAAK-AGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLR   84 (94)
T ss_dssp             CCSEECCCCTTCS---------SSTT-TTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEES
T ss_pred             CCCcEEEECCCCh---------hHHH-hCCCcccEEEEECCEEeCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            4699999999976         4554 357999995 8999999888655566654  46678999987

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.11  E-value=0.0054  Score=46.31  Aligned_cols=65  Identities=8%  Similarity=-0.046  Sum_probs=49.1

Q ss_pred             CCCceEeEecCCCCcccccCCCCCCCCcccc-ccCCE-EEEceeeccCcchhhhhhhh-cCCceEEEEEE
Q psy9829         106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSF-RKGDV-FHVIDTLHNGVVGSWQVFRI-AHNCISAQIKR  172 (333)
Q Consensus       106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~l-r~gD~-I~Vnd~dv~gv~~a~~alr~-~g~~v~L~v~R  172 (333)
                      .+.++.|.+|.+|..+ +=...+||+.- +| |+||+ +.||+..+++.....+.|+- ++..|+|.|.|
T Consensus        10 ~~~~~~I~~i~~G~~~-~~~~~sPa~~a-Gl~k~GD~I~~IdG~~v~~~~~~~~~l~g~~G~~V~L~i~R   77 (91)
T d1k32a1          10 DGDHYVVAKAYAGDYS-NEGEKSPIFEY-GIDPTGYLIEDIDGETVGAGSNIYRVLSEKAGTSARIRLSG   77 (91)
T ss_dssp             ETTEEEEEEECBSCTT-STTCBCGGGGG-TCCCTTCEEEEETTEECBTTBCHHHHHHTTTTSEEEEEEEC
T ss_pred             ECCeEEEEEEecCCCC-CcccCChhHhc-CCCCCCCEEEEECCEeecCcceeEEEEecCCCCEEEEEEEe
Confidence            3567999999998542 11224688774 46 89999 58999999988766677764 67779999987

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0021  Score=49.02  Aligned_cols=57  Identities=11%  Similarity=0.083  Sum_probs=40.3

Q ss_pred             CCceEeEecCCCCcccccCCCCCCCCccccccCCEE-EEceeeccCcchhhhhhhh--cCCceEEEEEEe
Q psy9829         107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDTLHNGVVGSWQVFRI--AHNCISAQIKRT  173 (333)
Q Consensus       107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I-~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~  173 (333)
                      ..|++|++|.|||         ||+. .+|++||+| .+|+..+++..+...+++.  .+..+.|.|.|.
T Consensus        25 ~~Gv~V~~V~~~s---------pA~~-aGl~~GDiI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~   84 (99)
T d1sota1          25 LQGIVVNEVSPDG---------PAAN-AGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRD   84 (99)
T ss_dssp             --CEECCCCCSSS---------TTTS-SSCCTTCEECBSSSSBCCCSHHHHHHHHHSCTTCEEEECC---
T ss_pred             CCccEEEEecCCC---------CHHH-cCCCcceEEEEECCEecccHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            4689999999965         5554 458999995 8999999988655556644  466788888773

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=95.12  E-value=0.0082  Score=44.67  Aligned_cols=55  Identities=9%  Similarity=0.073  Sum_probs=42.5

Q ss_pred             CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829         108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR  172 (333)
Q Consensus       108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R  172 (333)
                      .|+.|+++.+||.|         + +.+|++||. +.+|++.+++......+++.  .+..+++.|.|
T Consensus        19 ~G~~v~~v~~~s~~---------~-~aGl~~GDiI~~ing~~v~~~~~~~~~~~~~~~~~~~~l~v~R   76 (87)
T d2i6va1          19 LGYRVSPGKDPVLF---------E-SIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER   76 (87)
T ss_dssp             EEEEEEECSCHHHH---------H-HTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEE
T ss_pred             EEEEEecCCCCCHH---------H-HCCCCCCCEEEEECCEEeecHHHHHHHHHhhccccccEEEEEE
Confidence            48889999998754         2 245799999 58999999998655555544  56779999988

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.93  E-value=0.31  Score=41.59  Aligned_cols=81  Identities=14%  Similarity=0.216  Sum_probs=53.6

Q ss_pred             CeeehHHHHHHHHc-------CCEEEEecCccccc---cccccccccEEEEEecCchhhHHhhhc-CCCcchhhHHHHH-
Q psy9829          12 GIIRLSAIRDMMDR-------GRHGLLDITPNAVD---RLNYAQFYPIVIFLRAETKSNVKELRA-GIPKYHTNLARQR-   79 (333)
Q Consensus        12 ~~tsl~sVr~V~e~-------gkhCILDv~~~avk---~L~~~~l~PivIfIkp~s~~~lk~lr~-~~~Es~~ki~~ra-   79 (333)
                      .-.+++.|++.+|.       .+-||||  -.+|.   +|....|.||+++||-.|.+.|.+|-+ |.....+.++.+. 
T Consensus        86 ~r~~~~eVq~eIErIfelar~lqLvvLD--~dtInhP~ql~ktsLaPIivyikiss~kVLqrLIKsrGksq~k~~nvq~v  163 (219)
T d1t0hb_          86 TRSSLAEVQSEIERIFELARTLQLVVLD--ADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMV  163 (219)
T ss_dssp             SSSCHHHHHHHHHHHHHHHTTCCEEEEE--ETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHHC------CHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhhcccEEEec--cCccCCHHHhcccCCcceEEEEEeCcHHHHHHHHHhcChhhhhcccHHHH
Confidence            33467777777665       8999999  44566   888999999999999999988886633 3333334444443 


Q ss_pred             --hhccccc-cceeeEEE
Q psy9829          80 --SRVLFPV-GSTFVGSV   94 (333)
Q Consensus        80 --er~~qE~-G~~~g~~i   94 (333)
                        ++..|+. +..|...+
T Consensus       164 aa~kl~Qc~p~e~fD~iL  181 (219)
T d1t0hb_         164 AADKLAQCPPQESFDVIL  181 (219)
T ss_dssp             HHHHHHTSCHHHHCSEEE
T ss_pred             HHHHHhccCchhccceee
Confidence              5555774 45666554

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.88  E-value=0.13  Score=41.45  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=24.9

Q ss_pred             cccccCCCCCCCCc-------cccccCCEEEEceee
Q psy9829         120 HLTHFNYDQPEKGE-------MSFRKGDVFHVIDTL  148 (333)
Q Consensus       120 ~a~~~~~~gpa~g~-------l~lr~gD~I~Vnd~d  148 (333)
                      ++++|+|++..+++       |.|+.||+|.|.+.+
T Consensus        26 vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~   61 (145)
T d1vyva1          26 VKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKY   61 (145)
T ss_dssp             EEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEE
T ss_pred             EEEeeeeCCccCCcCCcccccccCcCCCEEEEeecc
Confidence            56899999999998       999999999884443